>input_sequence_52960
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GTTTATAAGCGCGCGCCGCTTGGTGTTCTTCTCCACAACCCGTCCCACACCCACCC-----------
ACAGGCCTCAGCCTCAGTCCTCCACTAGCAGATCTCTTCT----TCCCATAGAGCAGAGCGAGCAGAGCAGCCAGCATAC
AGCCATGATGATGATGAGCGAGGGAGTGAGCGTGCCGCCGTGGGGCAACCACCTCCCGGTGAGCGGCGTCGACGCCGGCG
GCG------GA------GGCGACGAGACGCCGTTCCTGTTCGCGGCGCTGCGCCAGTACCTGCCGTGCAACGACCTTGT-
--CGGCGCGGGCGCGGGCGCCGCGGAGGACGAGGACGAGGCGGCGGCCATGGCGGCGGCGGTGGACGCCTACGCCTGCGA
CGAGTTCCGCATGTACGACTTCAAGGTGCGCCGGTGCGCGCGCGGCCGCAGCCACGACTGGACCGAGTGCCCCTTCGCGC
ACCCGGGGGAGAAGGCGCGCCGCCGCGACCCGCGCAAGTACCACTACTCCGGCACCGCCTGCCCGGACTTCCGCAAGGGC
GGGTGCAAGCGCGGGGACGCCTGCGAGTACGCGCACGGCGTCTTCGAGTGCTGGCTCCACCCGGCGCGCTACCGCACGCA
GCCCTGCAAGGACGGCACCGCCTGCCGCCGCCGCGTCTGCTTCTTCGCGCACACCCCGGACCAGCTCCGTGCCATGCCGT
CCCAGCACTCCAGCCCCAGGAGCACGCCCCTGTCGCCGCTCGCCGAGTCCTACGACGGCTCGCCGCTCCGCCGCCAGGCG
TTCGAGAGCTACCTCAGCAAGAGCATCATGTCCTCCTCGCCCACCAGCACCCTGCTCTCCTCGCCGCCCAAGTCGCCCCC
CTCCGAGTCGCCGCCATTGTCTCCCGACGGGGCCGCCTCCTATCGCCGCGGT---------TCTTGGCCCGGTGTCGGGT
CGCCCGTCAATGACGTCCTCGCCTCGCTCCGCCAGCTGCGCCTCGCCAAGGCGCAGGCGTCCCCGTCCGGTGGATGGTCC
GGCTACCCCACCTCCCCTGCTGCCTACGGCTCGCCCAAGGCCGCCGGCCTCTACAGCCTCCCCACCACCCCCATGGGCAC
CCAGACTAGCGCTTCCAGCTTCATGGCCAACCTGGAGCCACTGAACCTCCGCTTCATCGACGACGAGGAGCCAGTCCAGA
GGGTGGAGTCCGGGAGGGCGCTCCGGGAGAAGGTGTTCGAGCGGCTGAGCCGAGACGGTGCCGCGCCCCGCAGCTGCGAG
GTCGTCGGTGCCGGAGCGGGAGGCCCCGACGTCGGCTGGGTCTCCGACCTGATCAACTGAGGCGAGCCGCCGTTCTTGCA
AGTTCATTTTGTGACGAGGTGCTCGACAAGATTTCACGGCGGAGGTGGCGGTAAGAAGGAGAAGAAAAATGGCCCCCCA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>chr3D_1_TraesCS3D01G109300
GTGTCACATCTTACGTTCACTATGTTTGTGATCTTTTTTTTGTCCCAGCTTTTCTTCCCTTGTTGCTGCGTTATTCGTGG
AAGTTTAGATGTGACATCCTTTAAAAACATATAGATATGAATTAAACAAACTGATTATGTTTTAACAAACACTCAAAAAA
TATAAAAACGTCTATATCACTAAAAAATATCTAAACGCGCTTATATTTTTTTACAGAGGGAGTACTTTTTACTCATGAAA
AATCCGGGCTAATTACAGTCAGGAGAACACTC-ATGGATTATGCCCGTTTTCAACAATTACTATTAGTAGGAAATTTACG
GACGTTGACAGCCAAACAAATTCCTCCCCACACTTCTAATCCCAGCAGCTCACAGAAATACACATATAAGTAC--AGTTC
CTCTTACGCTAAGTGGAAAGGCAGGATAATTCTAAACTCGGAAGCAGCCAAACAGGCGACAAGCACATGCGAGGCCAGGG
CGATACACATACGCGCCTGGGGAAAGAAAAAAAAAGGCGAGCAGCCCACTGCCCACACG-CCCCACCTCACCACCCATCT
GCATGCACGCATCTGTCCAACCCGCGCCACCACACCAGTCCCTACCCCAGGTTTCCAGAACCTACACGAACGAATATCTT
C-------------------------TCTTCCT-TCTCTTCCAC-C------------CGACGGACCGGACCCCAAACCC
C-AAACCCCCAATCTATACACGTAGGGCAAAAATAAATAAAGA---TCGTAGGGCT-----CCCTCCCCTCCCCACGCCA
CGACGTGTCCCCGGCCCAACGCCCCCTCGAGCCACCTCGCCTCCCGCCTGCCTGACACCCTGCCTCCCCGCCCGCCGCGT
GTAACGCTCCGTACCGCGCCTTTATCCCCGCCTCCCGTCATCCCCTCTCGCTGACGCTGGGCCCTGAGCCTATAGTGGGG
ACCACGTGTCAGTGAGGTGCTCGGAGTGGCTG-CCCACAAACGGCGCCAGTTAGTTCGTACGACCGCGTTGCTACTCCGC
CCGTGGCCTGGGTGTTTATAAGCGCGCGCCGCTTGGTGTTCTTCTCCACAACCCGTCCCACACCCACCC-----------
ACAGGCCTCAGCCTCAGTCCTCCACTAGCAGATCTCTTCT----TCCCATAGAGCAGAGCGAGCAGAGCAGCCAGCATAC
AGCCATGATGATGATGAGCGAGGGAGTGAGCGTGCCGCCGTGGGGCAACCACCTCCCGGTGAGCGGCGTCGACGCCGGCG
GCG------GA------GGCGACGAGACGCCGTTCCTGTTCGCGGCGCTGCGCCAGTACCTGCCGTGCAACGACCTTGT-
--CGGCGCGGGCGCGGGCGCCGCGGAGGACGAGGACGAGGCGGCGGCCATGGCGGCGGCGGTGGACGCCTACGCCTGCGA
CGAGTTCCGCATGTACGACTTCAAGGTGCGCCGGTGCGCGCGCGGCCGCAGCCACGACTGGACCGAGTGCCCCTTCGCGC
ACCCGGGGGAGAAGGCGCGCCGCCGCGACCCGCGCAAGTACCACTACTCCGGCACCGCCTGCCCGGACTTCCGCAAGGGC
GGGTGCAAGCGCGGGGACGCCTGCGAGTACGCGCACGGCGTCTTCGAGTGCTGGCTCCACCCGGCGCGCTACCGCACGCA
GCCCTGCAAGGACGGCACCGCCTGCCGCCGCCGCGTCTGCTTCTTCGCGCACACCCCGGACCAGCTCCGTGCCATGCCGT
CCCAGCACTCCAGCCCCAGGAGCACGCCCCTGTCGCCGCTCGCCGAGTCCTACGACGGCTCGCCGCTCCGCCGCCAGGCG
TTCGAGAGCTACCTCAGCAAGAGCATCATGTCCTCCTCGCCCACCAGCACCCTGCTCTCCTCGCCGCCCAAGTCGCCCCC
CTCCGAGTCGCCGCCATTGTCTCCCGACGGGGCCGCCTCCTATCGCCGCGGT---------TCTTGGCCCGGTGTCGGGT
CGCCCGTCAATGACGTCCTCGCCTCGCTCCGCCAGCTGCGCCTCGCCAAGGCGCAGGCGTCCCCGTCCGGTGGATGGTCC
GGCTACCCCACCTCCCCTGCTGCCTACGGCTCGCCCAAGGCCGCCGGCCTCTACAGCCTCCCCACCACCCCCATGGGCAC
CCAGACTAGCGCTTCCAGCTTCATGGCCAACCTGGAGCCACTGAACCTCCGCTTCATCGACGACGAGGAGCCAGTCCAGA
GGGTGGAGTCCGGGAGGGCGCTCCGGGAGAAGGTGTTCGAGCGGCTGAGCCGAGACGGTGCCGCGCCCCGCAGCTGCGAG
GTCGTCGGTGCCGGAGCGGGAGGCCCCGACGTCGGCTGGGTCTCCGACCTGATCAACTGAGGCGAGCCGCCGTTCTTGCA
AGTTCATTTTGTGACGAGGTGCTCGACAAGATTTCACGGCGGAGGTGGCGGTAAGAAGGAGAAGAAAAATGGCCCCCCAA
AAAAATATCCCCAAGTTTCTTTTG---CTATTTCCAGTTGCTGCAAATTCCTGTACATAGCTGCTATCTACTCTCCCATG
TGAATATTCCCGGTTGGTTGGCGGAAGGGAGGCAAGATGAGATGAA-----GATGGATGGGTGGATTTGTTTTGGGGTTC
TTGAGGAAGTGTAGGAATTTACCCATAAAAAT---TACCAAAAAAAGGAGGGAAGAGATGGATTGGAACTCGGAAGGTGG
TGGTGGTGGTCCGTCCTCTCTGTGGATAGGTGCTGAAGCATGGATGGA------------TGGATGGTGAAGATGAGGTT
GGAAGGTGGACTTGATTCCTGTGATTACCGGTGCTGATGTTTGTTTATCGTCGTCCTCG----------GCAGTGCATCA
TGTGGACTAGCCGAAGACTGACCGATTTCGACCGCCCTCTAGTTGATTTCACATTTTGTTAATTATTAATGTAATCTCCT
TCGTAAG---GAT-------GATCCCCCACAGCATATTTTGTACCTTAGCTGCCTAGCAGCCTTT---------AATCCC
TGTTCGTCCAATGGTGATGAACGAACTCCCCAATGTATTTGTGTAATCCTTTGCTATTATCAAGTAAATGATGTTTATCT
ATATCTATCTATCAGTAAAGT-AATATTCCCGGTTACTCTTTTACCCCTTTTTCTTGTGTTGCACGTCTTGCTATATCTA
TCTACCT----GTTCTTTCCAGTAAAT--AAGTGTGAATGAAATGAAATGGTTGATTGTGATCGTTG-----------CT
TGGCGCTTGCGGTGACGTGGTGGTGACCGGCGCGCGTGTCCGGCGACGGTTGAAGCGGCGTGGTCGACAATGGTGGCTGT
GGAACTCGGATGGTTG-GGAGCAGTATGGGGGCGATGTGGGCGTGGAACCCCCCGTGAGAGAGACCGGCGAGCGAC----
CGCGACGGCACCGGAGTGGCCACCTGGTCGTTTTCCCCTTCCGGTGCGCTGGCCCTGCGAGGAGGGGATTGGTACAGCCG
GCGGCGTGCGCGTCGTCCCTGTCGCCGTCGCACA
>chr3B_231
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------ACTCATGAAA
AACCCTGGGAAATCACACCCAGTAGAACACTCTATGGATTATGCCCGTTTTCGACAAGTACAGTTACTAGGGAATTTACG
GACGTTGACAGCCAAACAAATTCCTCCCCACACTTGTAATCCTAGCAGCTCACAGAAATACACATATAAGTA--TAGTTC
CTCTTACGCTAAGTGGAAAGGCAGGATAATTCTAAACTCGGATGCAGCCAAACAGGTGACAAGCACATGCG-----AGGG
CGGTACACATACGCGCCTGGGGAAAGAAAAAAAAAA--------------------------------CACCACCCATCT
GCATGCACGCATCTGTCCAAGCCGCGCCACCACACCAGTCCCTACCCCAGGTTTCCAGAAACTACACGAACGAATATCTT
CCCTCCCTACTTAAAAAAAAAAAAAATCTTCCC-TCCCTTCCAC-CCGACGGACGAGACGACGGACCGGACCCCAAACCC
CCAAATCCCCAATCTATACACGTAGGGCAAAAGTAAA----GA---TCGTAGGGATCGATCCCCTGCCCTCCCCACGCCA
CGACGTGTCCCCGACCCAACGCCCCCTCGAGACACCTCGCCTCCCGCATGCCTGACACCCTGCCTCCCCGCCCGCCGCGT
GTAACGCTCCGTACCGCGCCTTTATCCCCGCCTCCCGTCATCCCCTCTCGCTGACGGTGGGTCATGGGGTTATGGT-GGG
ACGCCGTGTCAGTGAGGTGCTCGGAGTGGCTG-CCCGCAAACGGCGTCAGTTAGTTTGTACGACCGCGTTGTTACTCCGG
CCGTGGCCTGGGTGTTTATAAGCGCGCGCCGCTTGGTGTTCTTCTCCACAATCCGTCCCACACCCACCC-----------
ACAGGCCTCAGCCTCAGTCCTCCACTAGCAGATCTCTTCT----TCCCATAGAGCAGAGCAAGCAGAGCGGCGAGCAGAC
AGCCATGATGATGATGAGCGAGGGAGTGAGCGTGCCGCCGTGGGGCAACCACCTCCCGGTGAGCGGCGTCGACGCCGGCG
GCG------GCGGAGGCGGCGACGAGACGCCGTTCCTGTTCGCGGCGCTGCGCCAGTACCTGCCGTGCAACGACGTGCTC
GGCGGCGCGGGCGCGGGCGCC---GAGGACGAGGACGAGGCGGCGGCCGTGGCGGCCGCGGTGGACGCCTACGCCTGCGA
CGAGTTCCGCATGTACGACTTCAAGGTGCGCCGGTGCGCGCGCGGCCGCAGCCACGACTGGACCGAGTGCCCCTTCGCGC
ACCCGGGGGAGAAGGCGCGCCGCCGCGACCCGCGCAAGTACCACTACTCCGGCACCGCCTGCCCGGACTTCCGCAAGGGC
GGCTGCAAGCGCGGGGACGCCTGCGAGTACGCGCACGGCGTCTTCGAGTGCTGGCTCCACCCGGCGCGCTACCGCACGCA
GCCCTGCAAGGACGGCACCGCCTGCCGCCGCCGCGTCTGCTTCTTCGCCCACACCCCGGACCAGCTCCGCGCCATGCCGT
CCCAGCACTCCAGCCCCAGGAGCACGCCCCTGTCGCCGCTCGCAGAGTCCTACGACGGCTCGCCGCTCCGTCGCCAGGCG
TTCGAGAGCTACCTCAGCAAGAGCATCATGTCCTCCTCGCCCACCAGCACCCTGCTCTCCTCGCCGCCCAAGTCGCCCCC
GTCCGAGTCGCCGCCATTGTCCCCCGACGGGGCCGCCTCCTTCCGCCGCGGCTCTTGCGGCTCTTGGCCCGGCGTTGGGT
CGCCTGTCAATGACGTCCTCGCCTCGCTCCGCCAGCTGCGCCTCGCCAAGGCGCAGGCGTCGCCGTCCGGTGGGTGGTCC
GGCTACCCCACCTCACCTGCCGCCTACGGCTCGCCCAAGGCCGCCGGCCTCTACAGTCTCCCCACCACCCCCATGGGCGC
ACAGACTGGCGCCTCCAGCTTCATGCCCAACCTGGAGCCACTGAACCTCCGCTTCCTCGACGACGAGGAGCCTGTCCAGA
GGGTGGAGTCCGGGAGGGCCCTCCGCGAGAAGGTGTTCGAGCGGCTGAGCCGAGACGGCGCCGCACCGCGCAGCTGCGAG
GTCG---GTGCCGGAGCAGGAGGCCCCGACGTCGGCTGGGTCTCCGACCTCATCAACTGA--------GCCGTTCTCGGA
AGTTTATTTCGTTGAGGTAG---CAAGAAGATGGCACGGCGGAGGCGGCGGTAAGA---AGAAGAAAAATGGCCCCCCCA
AAAAATATCCTC-AGTTTCTTTTG---CTATTTCCAGTTGCTGCAAATTCCTGTACATAGCTGCTATCTATCTCCCG-TG
TGAATATTCCCGGTTGGTTGGCGGAAGGGAGGCAAGAT-----GAA-----GATGGATGGGTGGATTTGTTTTGGGGTTC
TTGAGGAAGT--AGGAAGTTACCCAAAAAAATTATTACCAAAAAAAGGACGGAAGAGATGGATTGGAACTTGGAAGG---
TGGTGGTGGTCCGTCCTCTCTGTGGATAGGTGCTGAAGCA----TGGA------------TGGATGGTGAAGATGGGGTT
GGAAGGTGGACTTGATTCCTGTGATTACCAGTGCTGATGTTTGTTTATCGTCGTCCTCGGCAGTGCAGTGCAGTGCATCA
TCTGGACTAGCCGAA----GACCGATTTCGACCGCCCTCTAGTTGATTTCACATTTTGTTAATTATTAATGTAATC--CT
TCGTAAG---GATGATGATCGATCCCCCACAGCATATTTTGTACCTTAGCTGC---------TTA---------AATCCC
TGTTCGTCCAATGGCGATGAACGAACTCC-CAATGTATTTGTGTAATCCTTTGCTATTATCAAGTAAATGATGTTTATCT
ATATTTA-CTATCAGTAAAGT-AATATTCCCGGTTACTCTTTACACT-TTTTTCTTGTGTTGCACGTCTTGCCATATCTA
TCTACCTACCCGTTCTTTCCAG----T--AAGTGTGAATGAAATGAAATTTGTGATTGAGATTGAGATTGTGATTGTTTT
TGGCGCTTGCGGTGACGTGGTGGTGACCAGCGCGCGTGTCCGGCGACGGTTGAGGCGGCATGGTCGACAATGGTGGCTGT
GGAACTCGGATGGTTG-G-AGCAGTATGGGGGCGATGTGGGCGTGGAACCCCCCGTGAGAGAGACCGGCGA----GCGAG
CGGGACGCCACCGGAGTGGCCACCTGGTCGTTTTCCCCTTG-GGTGCGCTGGCCCTGCGGGGAGGGGATTGGTACAGCCG
GCGGCGTGCGCGTCGTCCCTGTCGCCGTCGCACA
>chr3A_358
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------ATACCAGCAGCTCACAGAAACACACATACACCATAGTAGTTC
CTCTTACGCTAAGTGGAAAGGCAGGATAATTCTAAACTCGGAAGCAGCCAAACAGGTGACAAGCACATGAG-----AGGT
CAGGGGAAAGG-----------------AAAAAAAGGCGAGCAGGCCACTGCCCGCACGACCCCACCTCACCACCCATCT
GCATGCGCGCATCTGTCCAACCCGCGCCACCCCACCAGTCCCTACCCCAGGTTTCCAGAAACTACACGAACGAATATCTC
C-------------------------TCCTCCCTTCCCTTCCACCCCGACGGACGCGACGACGGACCGGACCCCAAACCC
CCAAACCCCCAATCTATACACGTAGGGCGAAAATAAATAAAGATCGTCGTAGGGCT-----CCCTCCCCTCCCCACGCCA
CGACGTGTCCCCGGCCCAACGCCCCCGCGAGACACCTCGCCTCCCGCATGCCTGACACCGTGCCTCCCCGCCCGCCGCGT
GTAACGCTCCGTACCCCGCCTTTATAGCCGCCTCCCGTCGTCCCCTCTCGCTGACGGTGGGCCGGGGGGTTGGGGTGGGG
GTCAAGTGTCAGTGGGGGGCGAGGGGTGGCTGCCCCGCTAACGGCGTCAGTTAGTTCGTACGACCGCGCTGTTACTCCGG
CCGTGGCCTGGGTGTTTAAAAGCGCGCGCCGCTTGGTGTTCTTCTCCACAATCCGTCCCACACCCACCCACAACAAGGCC
ACAAGCCTCCGCCTCAGTCCTCCACTACCAGATCTCTTCTACCTTCCCCTAGAGCAGAGCAAGCAGAGCAAGGCCAAGA-
---CATGATGATGATGAGCGAGGGAGTGAGCGTGCCGCCGTGGGGCAGCCACCTGCCCGTGAGCGGCGTCGACGCCGGCG
GCGGCGGCGGA------GGCGACGAGACGCCGTTCCTGTTCGCGGCGCTGCGCCAGTACCTGCCGTGCAACGACCTTGT-
--CGGCGCGGGCGCGGGCGCC---GAGGACGAGGACGAGGCGGCAGCCATGGCGGCCGCGGTGGACGCCTACGCCTGCGA
CGAGTTCCGCATGTACGACTTCAAGGTGCGCCGCTGCGCGAGGGGCCGCAGCCACGACTGGACCGAGTGCCCCTTCGCGC
ACCCGGGGGAGAAGGCGCGCCGCCGCGACCCGCGCAAGTACCACTACTCCGGCACCGCCTGCCCCGACTTCCGCAAGGGC
GGCTGCAAGCGCGGGGACGCCTGCGAGTACGCGCACGGCGTCTTCGAGTGCTGGCTCCACCCGGCGCGCTACCGCACGCA
GCCCTGCAAGGACGGCACTGCCTGCCGCCGCCGCGTCTGCTTCTTCGCCCACACCCCGGACCAGCTCCGCGCCATGCCGT
CCCAGCACTCCAGCCCCAGGAGCACGCCCCTCTCGCCGCTCGCCGAGTCCTACGACGGCTCGCCGCTCCGCCGCCAGGCG
TTCGAGAGCTACCTCAGCAAGAGCATCATGTCATCCTCGCCCACCAGCACCCTGCTCTCCTCGCCGCCCAAGTCGCCCCC
GTCCGAGTCGCCGCCATTGTCTCCCGACGGGGCCGCCTCCTTCCGCCGCGGCTCTTG---------GCCCGGCGTCGGGT
CGCCCGTCAATGACGTCCTCGCTTCGCTCCGCCAGCTGCGCCTCGCCAAGGCGCAGGCGTCCCCGTCCGGCGGCTGGTCC
GGCTACCCCACCTCCCCTGCCGCCTACGGCTCGCCCAAGGGCGCCGGCCTCTACAGCCTCCCCACCACCCCCATGGGCAC
TCAGACCAGCGCCTCCAGCTTCATGGCCAACCTGGAGCCACTGAACCTCCGCTTCATCGACGACGAGGAGCCGGTCCAGA
GGGTGGAGTCCGGGAGGGCGCTCCGGGAGAAAGTGTTCGAGCGGCTGAGCCGAGACGGTGCCGCGCCCCGCAGCTGCGAG
GTCGTCGGCGCCGGAGCAGGCGGCCCCGACGTCGGCTGGGTCTCCGACCTGATCAACTGAGGCAAGCCGCCGTTCTTGCA
AGTTCATTTTGCGACGAGGCGCTCAACAAGATTCCACGGCGGAGGTGGCGGTAAGAAG-AGAAGAAAAATGGCCCCCCAA
AAAAATACCCCCGAGTTTCTTTTGCTACTATTTCCAGTTGCTGCAAATTCCTGTACATAGCTGCTATCTA-TCTCCCATG
TGAATATTCCCGGTTGGTTGGCGGAAGGGAGGCAAGATGAAGATGAAGATGGATGGATGGGTGGATTTGTTTTGGGGTTC
TTGAGGAAGTGTAGGAATTTACCCAAAAAAATG-TTACCAAAAAAAGGAGGGAAGAGATGGATTGGAACTTGGAAGGCGG
C---GGTGGTCCGTCCTCTCTGTGGATAGGTGCTGAAGCA----TGGATGGATGGATGGATGGATGGTGAAGATGAGGTT
GGAAGGTGGACTTGATTCCTGTGATTACCGGTGCTGATGTTTGTTTATCGTCGTCT------------------------
------------GAA----GACCGATTTCAACCGCCCTCTAGTTGATTTCACATTTTGTTAATTATTAATGTAATCTCCT
TCGTAAGGATGAT-------GATCCCCCACAGCATATTTTGTACCTTAGCTGC---------TTAGCAGCCTTTAATCCC
TGTTCATCCAATGGCGATGAACGAACTCCCCAATGTATTTGTGTAATCCTT--CTATTATCAAGTAAATGATGTTTATCT
ATACCTATCTATCAGTAAAGTAAATATTCCCGGTTACTCTTTTACCCCTTTTTCTTGTGTTGCACGTCTTGCTACATCTA
TCTATCT----CTTCTTTCCAGCAAGTAAAAGTGGGAATGAAATGTAATGGTTGAG------------TGTGATTGTTCT
TGGCGCTTGCGGTGACGTGGTGGTGACCGGCGCGCGTGTCCGGCGACGGTTGAGGCGGCATGGTCGACAATGGTCGCTGC
GGAGCTCGGATGGCTGTG-AGCAGTATGGGGGCGATGTGGGCGTGGAACCCCCCATGAGAGAGACCGGCGGGCGGGCGAG
CGCGACGGCACCGGAGTGGCCACCTGGTCGTTTTCCCCTCG-GGTGCGCTGGCCCTGCCGGGAGGGGATTGGTACAGCCG
GCGGCGTGCGCGTCGTCCCTGTCGCCGTCGCACA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
--S--S--SS---S---SS---S-----------------------------S----S---SS---S----S--------
-----------------------------------S------------------------------------S-------
--------------------------------------------------------S--------------SSSSS----
--S-----------------------------------------S---------S-------------------------
------------------------------------------------------------S-------------------
--------------------------------S---S-------------------------------------------
--------------------------------------------------------------------------------
-------------------------------S---------------S--------------------------------
--------------------------------------------------------S------S--S-SS---S------
------------------------------------S---------S------------------------S-------S
---------------------------------------------------S----------------------------
------------------------------------------------------------S-----------S----S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------SSS--------------------------------S-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
------------------------------------------------S--------------------S----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S----------------------------------------SS--------S--------------------S-------
-------------------------------------------------------------------------S------
--------------------S-----------------------------------------------------------
S-----------S-----------------------------------------------------------S-------
--------------------------------------------------------------------------------
-----------------S---------------------------------------------S----------------
-------------------S----S--------S------------------------S---------------------
------------S---------------------------------------------------------S---------
----------------------------------------SSS-------------------------------------
-------------------------S--------------------------------------------S------S--
----------------------------------------SSSS------------------------------------
--------------------------------------------------------------------------------
-S-------------SSSS-------------------------------------------------------------
-----------------------------------------------------SSSSSSSSS--S---------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S--S--------------------------------S---S-SSS-------------
-----------------------------------------------------S-----S--------------------
------------------S-------------------------------------------------------SS----
----------------------------------------SS-----------------S--------------------
----------------------------------
>forward_71
---------------------------------------------------TTCTTCCCTTGTTGCTGCGT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>reverse_1181
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------GAGCAGAGCAGCCAGCATA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>forward_80
------------------------------------------------------------TGTTGCTGCGTTATTCGTGG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>reverse_2074
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------ATGGTCC
GGCTACCCCAC---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>forward_81
-------------------------------------------------------------GTTGCTGCGTTATTCGTGG
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>reverse_2161
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CCAGACTAGCGCTTCCAG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>forward_621
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CCTACCCCAGGTTTCCAGAAC-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>reverse_2425
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------GACAAGATTTCACGGCGGAG------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>forward_2384
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CGACCTGATCAACTGAGGCG----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>reverse_3500
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------AGGAGGGGATTGGTACAGCC-
----------------------------------
