>input_sequence_52941
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ATGCC
GGCGGGCCACGGTCTGCGGTCGCGGACGCGCGACCTGTTCGCGCGCCCGTTCCGGAAGAAGGGTTACATCCCGCTCACCA
CCTACCTGCGCACCTACAAGGTCGGCGAGTACGTCGATGTCAAGGTGAACGGCGCCGTGCACAAGGGTATGCCGCACAAG
TTCTACCACGGCCGCACCGGACGCGTGTGGAACGTCACCAAGCGCGCCATCGGCGTCGAGATCAACAAGCAGGTATATAT
CGATCCCGTTTTCTTCCCTCGCGGCTGTGCTGGCACAGATTCTGTC-----GATCTGCGTCCCTGAGGTACTTGCTTCAC
AGTGATGCCGCCGTCGTGGCAGGCTCCCATTTGTAGGATTTGTTCAACTGATTGTTGTT-TGCAATTGCGATTCTGTTTA
TTTAGTAGCTGTAATGGGCTTTTACAGCCTCTTGTTGGAAGGCTTGACATTCTTAGATCTGCCTGCTTGGTAGGTGTCGC
ATACAGAGGATTTAATGGCGATAGTGTGGGTTAATGCTTGTGCGGCTGCAGTCATCCAACGTTATCATGTTTTATATGCT
CTGAAGATTCATTATGGTTGTAGTAATCCAA--------GATGTTGTTTTGTCATCAGTATGGGAA--CAAATGGTAGCT
AAGGCGAGGAGGGTTGAAGCTGAAGTTGTT--CAGTGTTTGTTGTACACA-CATGTTCCCTCAAATGGTTTTAGCTGCTT
CCA----TTGCATGGAATACTAAA--------------------------------------------------------
------------------TTTGGAC-------TGTCCCAGCTTTACAATTCTATTAGTTTCGTCTATTGATTGTTGTGTG
ATTAGAGACTGATAAAGTGTTGAGTGCATTTACAATTATGGCATATTGAAGATTACTGCTTTGCTGAGC-AAACAGTCCC
CTAGG---------------------------------------------------------------------------
-----------------------------------------ATTTCTGCCCAACAAAGATCATAGTAATCCATTCTGCTG
TGGCCCTGTAT----AC---------------------------------------------------------------
------------------------TAGCATGTTATCTCTTTTCTGAAGTAGATAAGATCCATTC-T--------------
-------------------------------------------------------------GTTGTTAGTGTTAAGAT--
-----------------------------------------------------ATGTATGTTTTGCCCTTTGTTTTCTTT
GAACTACACCTCAGGT----------------------------------------------------------------
-----------TATATGGCTG-----------------------------------------------------------
--------------------------------------------------------------------TATTGTGCTCTA
GTGGAACATACTA--TTTTATCGTAAAATTTCATGTAGACTCAAGTTCAGGACTAATATATTTACAATCACAATCCTGTT
TACATTGTCCAGGTTGGAAACCGCATTATCAGGAAAAGGATCCATGTCCGTGTTGAGCATGTGCAGCCATCCAGGTGTGC
GGAGGAGTTCCGCCTGAGGAAAGTGAAGAATGACCAGCTCAAGGAGGAAGCCAAGGCACGTGGTGAGGTCATCAGCACCA
AGAGGCAGCCGCTCGGCCCTAAACCTGGGTTCATGGTTGAGGGTACCACAATCGAGACCGTCACTCCCATTCCGTACGAT
GTGGTCAATGATCTCAAGGGTGGTTACTAG--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>chr1A_1_TraesCS1A01G147000
AAATGCGGTTCCTCAACACTAGCGGGAAAGAAGGCCCATGGGTTACCGTAGGGCAATGCAGTGTGTATTACTGGGTTCCA
TTTTCAACTTGAGAAGAACTCATGAACGATATGTGCACGATTCATCTGTCCATTTATTTGATCCTTCCTTATTCCACTCA
CTCAGGTTCATTTACTCACGCACTTACCCATAGTTTGATGTGTTGAGAAATTT--TGACCTTAATTCTAATGTGGAATAT
CTTATATATCCATAAACCTCAGATATTCTTTT-CAGCAGAACATGATCATTATGTTTATATATGCAACTAGTA-AAAAAT
TTAAACTGCTCGTGGCAACGCATGTGCATTCTACTAGTTACTAGTAATAACGTAGGATTGTCATATGGAAACCCAAAAAA
TGTTTTCCAGCCGCTCAAGCTTTTCTTTACCTTAA-TTCGATCTATGTTCACCATGATTTTAAGTGCACGTGTTTTTTAT
TGAACACCGTACAGACGCAAGCGCTCATATACACGCGCATACACCCACCCATATGAATGCACACACGCATACCCTACCTC
TATGAGCATCTCCGAAGGACTGAGCCGACATATCATCTTGAAATTTACGAAGTCGCCGTAGGCACCTCGTCGTCGACGGG
AACGTCTCCTCCCACTGAATGCACATCGCCGGAAATAAGCTTATACACTAGAGCACTAATTTTATTTTGCGGGGAGTTGA
AAAATCAATTCCACCATTTTTTTGAGAA---TAATCAGTTCCACCATTTTTTTTTAGAAGTATT---AATTCCACCATTT
ATTTAGGGGTATCAATTCCACCAAA-GTCTCATCGTCCTACATCTGCAATGGGCCGAAACTCCGTCATAAAAAGTTCAGC
CCAACACCACTCGGACCCCCCACCA-------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CAGAGCTATAAAATAGAACCATCTCCAAACCCT
CGCAAACCCTAG-TCCCCCCACACCAACCACCCTTCTCCCGCCGCCGCCCCGCGAAGCAAAGCAGGAGGAGCAGGATGCC
GGCGGGCCACGGTCTGCGGTCGCGGACGCGCGACCTGTTCGCGCGCCCGTTCCGGAAGAAGGGTTACATCCCGCTCACCA
CCTACCTGCGCACCTACAAGGTCGGCGAGTACGTCGATGTCAAGGTGAACGGCGCCGTGCACAAGGGTATGCCGCACAAG
TTCTACCACGGCCGCACCGGACGCGTGTGGAACGTCACCAAGCGCGCCATCGGCGTCGAGATCAACAAGCAGGTATATAT
CGATCCCGTTTTCTTCCCTCGCGGCTGTGCTGGCACAGATTCTGTC-----GATCTGCGTCCCTGAGGTACTTGCTTCAC
AGTGATGCCGCCGTCGTGGCAGGCTCCCATTTGTAGGATTTGTTCAACTGATTGTTGTT-TGCAATTGCGATTCTGTTTA
TTTAGTAGCTGTAATGGGCTTTTACAGCCTCTTGTTGGAAGGCTTGACATTCTTAGATCTGCCTGCTTGGTAGGTGTCGC
ATACAGAGGATTTAATGGCGATAGTGTGGGTTAATGCTTGTGCGGCTGCAGTCATCCAACGTTATCATGTTTTATATGCT
CTGAAGATTCATTATGGTTGTAGTAATCCAA--------GATGTTGTTTTGTCATCAGTATGGGAA--CAAATGGTAGCT
AAGGCGAGGAGGGTTGAAGCTGAAGTTGTT--CAGTGTTTGTTGTACACA-CATGTTCCCTCAAATGGTTTTAGCTGCTT
CCA----TTGCATGGAATACTAAA--------------------------------------------------------
------------------TTTGGAC-------TGTCCCAGCTTTACAATTCTATTAGTTTCGTCTATTGATTGTTGTGTG
ATTAGAGACTGATAAAGTGTTGAGTGCATTTACAATTATGGCATATTGAAGATTACTGCTTTGCTGAGC-AAACAGTCCC
CTAGG---------------------------------------------------------------------------
-----------------------------------------ATTTCTGCCCAACAAAGATCATAGTAATCCATTCTGCTG
TGGCCCTGTAT----AC---------------------------------------------------------------
------------------------TAGCATGTTATCTCTTTTCTGAAGTAGATAAGATCCATTC-T--------------
-------------------------------------------------------------GTTGTTAGTGTTAAGAT--
-----------------------------------------------------ATGTATGTTTTGCCCTTTGTTTTCTTT
GAACTACACCTCAGGT----------------------------------------------------------------
-----------TATATGGCTG-----------------------------------------------------------
--------------------------------------------------------------------TATTGTGCTCTA
GTGGAACATACTA--TTTTATCGTAAAATTTCATGTAGACTCAAGTTCAGGACTAATATATTTACAATCACAATCCTGTT
TACATTGTCCAGGTTGGAAACCGCATTATCAGGAAAAGGATCCATGTCCGTGTTGAGCATGTGCAGCCATCCAGGTGTGC
GGAGGAGTTCCGCCTGAGGAAAGTGAAGAATGACCAGCTCAAGGAGGAAGCCAAGGCACGTGGTGAGGTCATCAGCACCA
AGAGGCAGCCGCTCGGCCCTAAACCTGGGTTCATGGTTGAGGGTACCACAATCGAGACCGTCACTCCCATTCCGTACGAT
GTGGTCAATGATCTCAAGGGTGGTTACTAGGGTGTTTGGGTTATCTGCCTGCACAACCAGTTCAAATCTATGGTGCTCTT
ATGGGTTGGATTTGCTCTCTGAGCAGTAGTCTGGGTTGGGTCTTTATTCATGTCAAGAAGATTTTCGGTGTAGGTTGCTA
TCATGAGTTTTGCAGAAATGCTATACTGTGCTATTTCCTTAAGAATGATGATGTGCTCTTTTGAACTATGTAGTTACATT
GCTTACCTCCGAAGGTTCTCTTTGCCTCTACAGCCTTGGTACTGCAGAGCTGCTGCAGCTTGCTGTTTGTCTTTTGAACT
TTGACCCAATCGATTCAATTACTTCTCAGTGCATTTTGTATA---TTACGTACTTGCTTGATCTACATCTTGTTTGCACG
CCATAGCTTGGGGGATTGCTTCTCCGCTTGCTTGTTCCATGATGATTCTCATTGTTTGA------------------TGT
GGATTGGCAACTGAGAGCAGTCAAAGTTCTTGAGTTGGCTTGTCGCTGCTCTATAACAGTACACCGCTGTGGCAGACGAA
TTTGTTGCTATTAGGGTGTTTGTCTGGACAATTTGAACATACCCATTTGTCCCTCGTTTCACACTTGTCCGCTTGTTGGA
ACTTCACCATGAGATGTTTTGCACTTCCTTTATGTTGACAAGTAATTCATTTGCTAGTTGAGCTTGGCAGTGAAATTATT
TATAGTAGAACAAAGAGCGCAAGGACTCATTGTTGGATGAAGTTGAACGGAACAAGTAGATGGAATGATCAAGTTGTATC
GCTCAAAGAACCCCAATCTTGCATAAAGGAAAAAAGATGACTCGAGCTCTCAATAATCAATTCAGGGTAGATGGAGGGTG
AGGAAAGTGGAGGGTCAACTCAAGTATTCTTCGGTTGACCGCTTGCTTATCTTATCAAACGCACAACTTTAGACTGGTTC
AAGGCTGGTGCCAAATGCCTTGAATCACTATCTATTTAGTTTTTTTTTTTGTGTTCTAGCTGTTTTGTTGTTGTTTTCTT
ATTTCAAGTCG
>chr1D_1
AAATGGGGCTCCTGAGCACTAGCGAGAAAGAAGGCCCATGGTTTACCGTAGGGCAATGCAGTGTGTATTACTCGGTTCCA
TTTCCAACTTGAGAAGAACTCATGAACGCCATGTACGCGATTCATATGTTCATTCATTTGATCTTCCCTTATTCCACTCA
CTCAGATTCATTTACTTAGGCACTTACCCATTGTTTGATGGGTTGAGAAATTTAGTGACCTTAATTGTAATGTGGAATAT
CATATATATCCATAAACCTTAGATGTTTTTTTCCAGTAGAACATGATCATTATGTTTATATATGCAACCAGTAAAAAAAA
TTAAACTGTCCATGGCAACACACGTGCATTCTACTAGTTACTAGTAATAGTGTAGGATTGTCATATAGAAACCCGAAAAA
TGTTTTCCAGCCGCTCAAGCTTTTCTTTACCTTAAATTCAATCTATTTTCACCATGATTTTAAGTGCACGTGTTATTCTA
AAACATGCACCAT-------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AATAAGCTTATATAGTAGAGCACTAGTTTTATTTTTCCGAGAGTTAA
AAAATCAATTCCACCATTTTTGTTTTGAGAATAATCAATTTCACCATTTTTTTGAGAACT----ATCAATTCCACCATTT
TTTTTGGGGTATCAATTCCACCAAAAGTCTCATGCTCCTACATCTGCAATGGGCCGAAACTCCGTCAT-AAAAGTCCAGC
CCAACACCACTCGGACCCCC-ACCA-------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CAGAGCTATAAGATAGAACCATCTCCAAACCCT
CGCAAACCCTAG-CCCCCCCACACCAACCACCCTTCTCCCGCCGCCGCACCGCGAAGCAAAGCAGGAGCAGCAGGATGCC
GGCGGGCCACGGTCTGCGGTCGCGGACGCGCGACCTGTTCGCGCGCCCGTTCCGGAAGAAGGGTTACATCCCGCTCACCA
CCTACCTGCGCACCTACAAGGTCGGCGAGTACGTCGACGTCAAGGTGAACGGCGCCGTGCACAAGGGTATGCCGCACAAG
TTCTACCACGGCCGCACCGGACGCGTGTGGAACGTCACCAAGCGCGCCATCGGCGTTGAGATCAACAAGCAGGTATAGAT
CGATCCCGTTTTCTTCCCTCGCGGCTGTGCGGGCACAGCCACTGTC-----GATACGCGTCCCTGGGGTACTTGCTCCAC
AGCGATGTCGCAGTCGTGGTATACTCCCATTTGTAGAATTTGTGCAACTGATTGTTCTTTTGCAAGTGCGATTCTGTTTA
TTTAGTAGCTGTAATGGGCTGTA---------------AAAGTTTGACATGCGTAGATCTGCCTGCTTGGTAGGTGTAGC
ATACAGAGCATTTAATGGCGATAGTGTGGGGCAATGCTTGTGCGGCTGCAGTCCTACCACGTTATCATGTTTTATATGCT
CTGAAGATTCATTATGGTTGTAGTAATCCGA--------GATGTTTTTTCTTTATCAGTATGGGTC--CAAATGGTAGAT
AAGGCGAGGAGGGTTGAGGCTGAAGTTGTTCACAGTGTTTGTTGTACACATCATGTTCCCTCGAATGGTTTTAGCTGCTT
CCA----TTGCATGGAATACTAAA--------------------------------------------------------
------------------TTTGGAC-------TGCCCCAGCTTTACAATTCTATTAGTT---TCTATTGATTGTTGTGTG
ATTAGAGACTGATAAATTGCTGAGTGCATTTACAATTATGGCATATCGAAGAGTACTGCTTTGTTGAGGAAAACAGCTTC
CTAGG---------------------------------------------------------------------------
-----------------------------------------ATTTCTGCC-AACAAAGATTATAGTAATCCATTCTGCTG
TGGCCCTGTATG----C---------------------------------------------------------------
------------------------TATCACTTTATCTCTTTTCTGAAGTAGCTAAGTTCTAACTTTA-------------
--------------------------------------------------------------TTGTTAGTGGTAAGAT--
-----------------------------------------------------ATATATGTTTTGCCCTTTGTTTTCTTT
GAAATACACCTCAAGT----------------------------------------------------------------
-----------TATATGGCTATATTCAATATCTTGATTTGCTCATGGTAATAGGCTAGAACACTTTGCATC-TTGAAATC
AATAGTGCTATCAAGCATTTCTTTTTGTCAACTTATCCTTATGCTTCTGTGCAGCTTTACATTTCATTTATTGTGTTCTA
GTGGAACATACCAATTTGTATCATAAAATTTCATGTAGAGTCAAGTTCAAGACTAATATATTTACAATCACAATCGTGTT
TACATTGCCCAGGTTGGAAACCGCATTATCAGGAAAAGGATCCATGTCCGTGTTGAGCATGTGCAGCCATCCAGGTGTGC
TGAGGAGTTCCGCCTGAGGAAAGTGAAGAACGACCAGCTCAAGGCGGAAGCCAAGGCGCGCGGTGAGGTCATCAGCACCA
AGAGGCAGCCGCTCGGCCCTAAACCTGGGTTCATGGTCGAGGGTACCACAATTGAGACTGTCACTCCCATTCCCTACGAT
GTGGTCAATGATCTCAAGGGTGGTTACTAGGGTGTTTGGGTTATCTGCCTGCACAACCAGTTCAAATCTATGGTGCTCTT
ATGAGTAGGATTTGCTCTCTGAACTGTAGTCTGGGTTGGGTCTTTATTCATGTCAAGAAGATATTCGGTGTAGGTTGCTA
TCATGAGTTTTGCAGAAATGCTATACTGTGCTATTTCCTTCAGAATGATGGTGTGCTCTGTTGAACTATATAGTTACATT
GCTTGCCTCCAAAGGTTCACTTCGCCTCTACAGCCTTGGTACTGCAGGGCTGCTGCAGCTTGCTGTTTGTCTTTCGAGTT
TTGGCCCAATCGATTCAATTACTTCTC-GTGCATTTTGTATA---TTACTTT----CTTGATCTACATCTTGTTTGCATG
CCTTAGCTTCGGGGATTGCT--------------------------TCTC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>chr1B_737
TT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GAAAAATCAATTCCACCATTTTTTTGAGAATATATAATCAATTCCACCATTG
TTTTAGGGGTATCAATTCCACCAAA-GTCTCATCTTCCTACATCTGCAATGGGCCGAAACTCCGTCAT-AAAAGTCCAGC
CCAACACCACTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAGCTATAAAACAGAACCATCTCCAAACCCT
CGCAAACCCTAGTCCCCCCCACACCAACCACCCTTCTCCCGCCGCCGCCCCGCGAAGCAAAGCAGGAGGAGCAGGATGCC
GGCGGGCCACGGTCTGCGGTCGCGGACGCGCGACCTGTTCGCGCGCCCGTTCCGGAAGAAGGGTTACATCCCGCTCACCA
CCTACCTGCGCACCTACAAGGTCGGCGAGTACGTCGACGTCAAGGTGAACGGCGCCGTGCACAAGGGTATGCCGCACAAG
TTCTACCACGGCCGCACCGGACGCGTGTGGAACGTCACCAAGCGCGCCATCGGCGTCGAGATCAACAAGCAGGTATAGAT
CGATCCCGTTTTCTTCCCTCGCGGCTGTCCGGGCACAGCCACTGTT-----GATCTGTGTCCCTAGGGTACTTGCTTCAC
AGTGATACCGCCGTCGTGGCAGACTCCCATTTGTAGGATTTGTGCAACTTATTGTTCTT-TGCAAGTGCGATTCTGTTTA
TTTAGTAGCTGTAATGGGCTTTTGCAGCCTCTTCTTAGAAGGTTTGACAAGCGTAGATCTGCCTGCTTGGTAGGTGTGTC
TTACAGAGGATTTAATGGCGATAGTGTGGG-CAATGCTTGTGCGGCTGCAGTCCTACAACGTTATCATGTTTTATATGCT
CTGAAGAATAATTATTGTTGTAGTAATCCGAGTTGATATGATGTTGTTTTGTTATCAGTATATACGTTCAAATGGTAGAT
AAGGCGAGGAAGGTTGAAGCTGAAGTTGTG--CAGTGTTTGTTGTACACATCATGTTCTCTCAAATGGTTTTAGCTGCTT
GCTTCTGTTGCATGGAATACTAAA--------------------------------------------------------
------------------TTTGGAATTTTGATTGCCCCTGCTTTATAATTCTATTAGTTTTGTCTATTGATTGTTGTGTT
ATTAGAGACTAATAAAGTGCTGAGTGCATTTACAATTATGGCATATCGAAGAGTTCTGCTTTGCTTGAGGAAACA-----
--AGG---------------------------------------------------------------------------
-----------------------------------------ATTTCTGCCCAA-AAAGATTATATTAATCTATACTGCTG
TGGCCCTGTATACATAC---------------------------------------------------------------
------------------------TAGCATGTTATCTCTTCTCTGAAGTAGCTAAGTTCTAACTTT--------------
-------------------------------------------------------------GTTGTTAGTGGTAAGAT--
-----------------------------------------------------ATGTATGTTTTGCCCTTTGTATTCTTT
GAAGTACACCTCAAGT----------------------------------------------------------------
-----------TATATGGCTATATTGAATATCTCGATTTGCTTGTGGTAATAGGCTAGAACGATTTGCATCTTTGAAATC
AATAGTGCTATCAAGCATTTCTTTTTGTTCACTTATCCTGATGCTTTTGTTCAGCCTTGCATTTCATTCATTGTGTTCTA
GTGGAACATACCGATTTGTATCGTAAAATTTAATGTAGAGTCAAGTTCAGGACTAATATATTTACAATCACAATCCTGTT
TACATTGCCCAGGTTGGAAACCGCATTATCAGGAAAAGGATCCATGTCCGTGTTGAGCATGTGCAGCCATCCAGGTGTGC
TGAGGAGTTCCGCCTGAGGAAAGTGAAGAACGACCAGCTCAAGGCGGAAGCCAAGGCGCGCGGTGAGGTCATCAGCACCA
AGAGGCAGCCACTCGGCCCTAAACCTGGGTTCATGGTCGAGGGTACCACAATTGAGACCGTCACTCCCATTCCCTACGAT
GTGGTCAATGATCTCAAGGGTGGTTACTAGGGTGTTTGGGTTATCTGCCTGCACAACCAGTTCAAATCTATGGTGCTCTT
ATGAGTAGGATTTGCTCTCTGAGCAGTAGTCTGGGTTGGGTCTTTATTCATGTCAAGAAGATATTCGGTGTAGGTTGCTA
TCATGAGTTTTGCAGAAATGCTATACTGTGCTATTTCCTTCAGAATGATGATGTGCTCTGTTGAACTATATAGTTACATT
GCTTGCCTCCAAAGGTTCACTTTGCCTCTACAGCCTTGGTGCTGCAGGGCTGCTGCAGCTTGCTGTTTGTCTTTCGAGTT
TTGGCCCAATCGATTCAATTACTTCTC-GTGCATTTTGTATAGTGTTACTTT----CTTGATCTACATCTTGTTTGCACG
CCTTAGCTTGGGGGATTGCT--------------------------TCTCATTGTTTGATGTTGATTTCTGAAATCTTGT
GGATTGGCAACTGAGAGGAGCCAAA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>chr5A_1000
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GATGCC
GGCGGGGCACGGGCTGCGGTCGCGGACGCGCGACCTGTTCGCGCGGCCCTTCCGCAAGAAGGGGTACATCCCGCTCACCA
CCTACCTGCGCACCTACAAGGTCGGCGAGCATGTCGACGTCAAGGTGAACGGCGCCGTCCACAAGGGTATGCCGCACAAG
TTCTACCACGGCCGCACCGGTCGCGTCTGGAACGTCACCAAGCGCGCCATCGGCGTCGAGATCAACAAGCAGGTATAATT
CCCCAGCCCCATACCTTCTCTGTTCTTCATCTGTGGTCGTTGGGTTTGTTAGATCTGTGCTCCTAGGGC-----------
---GATACTGCGATCTTGACCGACGGGACACGTAAATCTGGTCTGTGGCCGGAGATTCTGAAGGTCACCAAATCTCTTGG
TTCGTTTGATGCGAATTCAG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------TCTAGTATACTAGAATGCTTTTCTGTGCTT
GATTTGTTATGATAGATTGCTATGTGTGCCTGTGATGAACTCTTCAGATCATGTTCATATGTTGTTACTCTTATAAATTG
TCTTGCTTACTTTTCCTGTTTGTCAATTTGCTTGCAT-AGCTACACATTTCTGTAATGTCCTGCAATGATTTGATGTCCT
GTTATGTTATGCTGCATCTTGAGAATGGATTAGATTGAACTGTTTGATTACACATGCCCTAGGCCGAGCGCTTCCCCCTT
CAGCTATGGGAAGGCGTGGTATTCCACGGGAGAGGTTTTTGTGGCGCACGATTCGTGTGATGGGCATACATTAAAATTTC
ATTCTGGCTTCCTCTGACTGCATGCTTTACCTGTAGCAGTTATGACAGCCTAA-TTGGATGATACACATATAAACATCTG
TTTTCTTATTTAGTGGATACCTTGGCTTGTTTCATGTAATGTTGCATATGGGTTGCATATCCTAGCCCGTTTCATCTAAT
GTGTCCTAGTTTGGATGCATTTCATGGCTTGTTTTGTCTAATATGTAGTAGTTTGGATGCATTTCATGGCTCATCTTTGT
ATGCTGATAAGATTTTTGTACACGGTAAATGTTAGCTCTCTAATGGTTCTCGTTGGTAGTAGTTGTTTGTTTTATCCATT
TGGATTGGTAGACCACAGTAAGCCACATTTTACATCACTTGATGTTGGTCCCAATATTATTTCTGCATTTCCTTGTCTGT
GAACTACTTTGTGTTATACATCTAAATTAGTGTTTGCTTGTCATGCCTTTTACATGTAAATGTTGCCCTGTACTATGTAT
CAGTGGTTTCATATATGTCTG-----------------------------------------------------------
--------------------------------------------------------------------TGCTCTGTACAC
AGATTGTAACATGTGTTCTCTGTCAT------------------------------------------------------
---------CAGGTTGGCAACAGGATCATCAAGAAGAGGATCCATGTGCGTGTGGAGCACGTGCAGCCATCCAGGTGCAA
CGAGGAGTTCCTCCAGAGGAAGCTCAACAACGACAAGCTGAAGGCGGAGGCCAAGGTGCGTGGTGAGGTCATCAGCACCA
AGAGGCAGCCAGCAGGCCCCAAGCCTGGGTTCATGGTGGAGGGCACCACCATCGAGACGGTCACCCCCATCCCGTACGAC
GTCGTCAACGATCTCAAGGGTGGTTACTAG--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>SNPs
-----S--S----S-S--------S----------------S------------------------------S-------
---S------------------------SS----S-S--------S---S----S--------S-S--------------
-----S----------S-S------------S--------S-------------------------S-------------
-S-----------------S----S--S--------S-------------------------------S----------S
--------SS-S-------S--S--------------------------SS---------------S-------S-----
---------------------------------------S------S---------------------------S--SSS
SS-SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------S-S----------S---------S-S-S-----S-
---------------------S-SSSS----------S---------------SSSS-SS---S----------------
S---------------------------------S---------------------------------S------S----
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------S------------------------------------------
-----------------------------------------------------------------------------S--
------------------------------S-------S--------------------------S--------------
----------------------S---------------------------------S--------S--------------
-----------------------S---------S--S-----S-------S-S------------------------S--
------------------------------SS---------------------S-S------------------------
-----------------------------S----------------------S-----------SS------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
----------------------------------------------S-----S-----------------------S-S-
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
---------------------------------------------------S-----------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
-----------------S---------------------S----------------------------------------
-------S------------------------------------------------------------------------
S-----------------------------S-------------S------------S----------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
---S--S-------------------------------------------------------S-----------------
----------------------------------------S------------------S---------S----------
----S-----S-------S----------------------------S--------------------------S--SS-
---S-----------------------S---------------------S-SSSSS------------------------
--S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------
-----------------S--S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_515
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------CGCAAGCGCTCATATACACG---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>reverse_2157
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TCCC
CTAGGATTTCTGCCCA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>forward_534
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GCGCATACACCCACCCATAT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>reverse_3071
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TGACCAGCTCAAGGAGGAAG------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>forward_665
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CTCCTCCCACTGAATGCACA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>reverse_3098
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------ACGTGGTGAGGTCATCAGC----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>forward_1643
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ACAGCCTCTTGTTGGAAGGC-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>reverse_3820
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------CACACTTGTCCGCTTGTTGG-
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