>input_sequence_52848
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----------------ATGGCGACGGAGGCGTTCGAGATGTACCGGCAGTCGGAGATCGGCTACGCCCTGACGGAGACGC
TGGACGAGATGGTGAGCAGCGGCGTGCTCAGCCCCGACCTCGCCATCACCGTCCTCCTGCAGTTCGACAAGGTCTCAACC
AAGTTTCTCTGTGAATG------------AAACTCATCAATCAATCAATATATTGCTGGGTGCAC---------------
-GTTTTGATCC--------------TGGTCTTGTTGTTGTTTCAGTCCATGGGACACGCGCTGGATAAGCATGTCAAGAG
CAGGGCCTTCTTCAAGGT-----ACCCAACCAACCAAATTGCCTACTCTCTTGTGCTAT----GCATTCATCCATCCATC
CCTGTGATTGTGAT------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GTGCAGG--------TTTGTTTCAAGGGAATAATGCAC--GCATGCTGAAATACCTTGCTG
CTGTTGCTACCTGTTACTGATAATGCAGATCAGCTACACATTTTTTTTTGTCTTCTGCTTGATGCTATGTATGACGTACG
GCTTGTGTGCTTAATAATTATCAAGTAAATTGCTCTGCGTGTTATTTTCCAGTTCTTTATTTAGGTGCAGATT----TAT
ACTTCTCCGGAAAAAGATACCTGAACT-----------TGC-----------------------CGACAGTTTGTTTAAC
CTCAGTTGGGTGATAAGTTAACACATGTTCCAGGAGATCTGCTTGCTCTGGTCTAAAAAAAAATTGGAACTGTATATGT-
--------------------GCTCATGTATCAACATGAGCACATATACAGTCAGTTATAATTGCTCAGACTATCAGAGGG
TAAACTGTCTGCGACATGCTAGTGTGTGGATTAACTTCCTTTCCTGTTCCTGACTTATA-----TCTGGACCTACTGGAT
GATTTCATTCTTAACTTGACATATGACGATAGTTTCTCGCAATAGTTTCCAAGTAGTATTTGATCTTTTTTGCTGATCGA
ATTTCCGAGAACAGACTTATGTGTTCCACTGTATTAGCGACACAAGCAGAGGGGACCTCCTTTTCTGTATCC-CAG----
----CCGGGAAATAATTCTGGAAACAACAACCATTTTTTGCATGTTTCTGGCATGCATCTAGGTGATGCTGTTTGTTTCA
GAAAGCTAT---------------------------------------------------------GCTTTTCTACATGG
CAATAGCTTAACTCAAATAGTTCACCTGGCTAGTAT----TTCAGTCAATTTCAGAATATTTTGTCTTCACAATATTGCA
ATCTGTAGTCATGTCTCCATCCATACATTGATTTCATTCACATGATTGTTTTCCTCTTGTCTTGACAGCGCGGCAATCTG
CGCACGTACAGGAACTGCGATGACGTCTGGACATTAATCTTGAGAGACGTGACGTTCAAGAACGAGGATATCGAAACAGT
CCTCCACAAAGTGAAGATCGTCGCCTGCGATTCTGCTGTGCTTAAGAAGCCTCTCGAACCTATTACTTGCCATCAGTGCC
AACCATAG------------------------------------------------------------------------
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-----------------
>chr3D_1_TraesCS3D01G531000
CCTCCGCCATTGCCTAAGGCGTTGTACAATGCTAGATGCTTAGGAAGGTGCATAAAAAATTAAACCGGGTTTTTCTGAAG
CACCAGTGCTTATTTCTACAGGAGAGACGCCTAATTAAGCGTCTGTCCTGTATAAATAAGCATCGGTGCTGAAGGAAAGT
ATTTTATTTCTTCAATACCTCTCCTAAGCACCTTGTATTGTATAAGGCCTAAAAGGTGCCGTGCCTGTAGGGGTGGGGGT
GGAATCCGTATGTACGCTGGTAAAGTTGCGCCCTGATCTAGGCCGTCCGTTTCCGATACAATGG---TAAAGCTATGTTT
TGCAACAACGGAAAAACAACTGGGAATATTATGGGTCGAAACTGCCCACGAGGCCCTGGCCAGCGTGACTAGGCTAGCAG
GGGCAGAAGGGGAATTAATCCGGAGAACCGACGTA------------CCCCGCCCGCCTCCGGTCCGGGCTATATATACC
TTC------------CCCCCTCCTCCCCCGGCCGTATATAAGCACGCAGATTCGAATTCCGCCGCTCCTCCTCCCCG---
---CGCGATCCCGCCA-----TCCTCTCCCGGACCTCGCCGGCAAGCAAGCTCCAAGGCCTCGCCGGCCCGGCCGTCCGC
GGCGCCAGACCGGAAGCGGCTATCAGTACCAGCGCGCCCGCAGCCGATCGACCACCCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCCGTTGCTTTCGGGGGTGGGGG--TTTTGGTTATCGGGAGCCATGGGGGTTGATTGATTCGGAGGCGCCG
CCGCGGGGGACGTCTAGGGTTT------CTGAACTCTGATGCTTACTGTTGATTGATCTACAGGGACAGGG---------
-GTCACGGTAGGAGGGATGGCGACGGAGGCGTTCGAGATGTACCGGCAGTCGGAGATCGGCTACGCCCTGACGGAGACGC
TGGACGAGATGGTGAGCAGCGGCGTGCTCAGCCCCGACCTCGCCATCACCGTCCTCCTGCAGTTCGACAAGGTCTCAACC
AAGTTTCTCTGTGAATG------------AAACTCATCAATCAATCAATATATTGCTGGGTGCAC---------------
-GTTTTGATCC--------------TGGTCTTGTTGTTGTTTCAGTCCATGGGACACGCGCTGGATAAGCATGTCAAGAG
CAGGGCCTTCTTCAAGGT-----ACCCAACCAACCAAATTGCCTACTCTCTTGTGCTAT----GCATTCATCCATCCATC
CCTGTGATTGTGAT------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GTGCAGG--------TTTGTTTCAAGGGAATAATGCAC--GCATGCTGAAATACCTTGCTG
CTGTTGCTACCTGTTACTGATAATGCAGATCAGCTACACATTTTTTTTTGTCTTCTGCTTGATGCTATGTATGACGTACG
GCTTGTGTGCTTAATAATTATCAAGTAAATTGCTCTGCGTGTTATTTTCCAGTTCTTTATTTAGGTGCAGATT----TAT
ACTTCTCCGGAAAAAGATACCTGAACT-----------TGC-----------------------CGACAGTTTGTTTAAC
CTCAGTTGGGTGATAAGTTAACACATGTTCCAGGAGATCTGCTTGCTCTGGTCTAAAAAAAAATTGGAACTGTATATGT-
--------------------GCTCATGTATCAACATGAGCACATATACAGTCAGTTATAATTGCTCAGACTATCAGAGGG
TAAACTGTCTGCGACATGCTAGTGTGTGGATTAACTTCCTTTCCTGTTCCTGACTTATA-----TCTGGACCTACTGGAT
GATTTCATTCTTAACTTGACATATGACGATAGTTTCTCGCAATAGTTTCCAAGTAGTATTTGATCTTTTTTGCTGATCGA
ATTTCCGAGAACAGACTTATGTGTTCCACTGTATTAGCGACACAAGCAGAGGGGACCTCCTTTTCTGTATCC-CAG----
----CCGGGAAATAATTCTGGAAACAACAACCATTTTTTGCATGTTTCTGGCATGCATCTAGGTGATGCTGTTTGTTTCA
GAAAGCTAT---------------------------------------------------------GCTTTTCTACATGG
CAATAGCTTAACTCAAATAGTTCACCTGGCTAGTAT----TTCAGTCAATTTCAGAATATTTTGTCTTCACAATATTGCA
ATCTGTAGTCATGTCTCCATCCATACATTGATTTCATTCACATGATTGTTTTCCTCTTGTCTTGACAGCGCGGCAATCTG
CGCACGTACAGGAACTGCGATGACGTCTGGACATTAATCTTGAGAGACGTGACGTTCAAGAACGAGGATATCGAAACAGT
CCTCCACAAAGTGAAGATCGTCGCCTGCGATTCTGCTGTGCTTAAGAAGCCTCTCGAACCTATTACTTGCCATCAGTGCC
AACCATAGTCCACTTCATGATGCACCAGGCGCCATCCCCAAACTATGGCTTATGGAGCATCTAGGCAACTTCCATTGTGC
TAGAGCATGGTATTTGTGAAGTTGTTATTGTTTGCATCGCCACTGGAATGATGGTTTCGCTCTTTCCTGTCAATAACATA
ACTTATGGATGAGTGGAACTACGAATAGAATGTGGCATCTTTGTGATTTTCTGTATTCAAATACACATATCCTTACACAA
AGTAGATCTGGAACTATATATATGTAATAAGCACTACATAGTACATACAGACTGAACTATTTACAAGTTGAAAGTGAACA
TTTACTCCAAGGACAGCTGCCGAGAGTGGAACTTGAGCTCGTTGTGGAAGCTTTGTAACACGAACTGCTCCTCCGTGATG
AGAATCGTCACGCTGCACTCCGACTTGGAGAATGACCACTAGTAGAAAAAGAGGCTTCCATACGCCCCCATTAGTCCCCA
AAACAATCGAACCGCGACAAAAGGGGCCTTTAGTCGCGGTTCGGGAGGAGACCCGCGACCAACTATCTGGGCCCAGCGCG
CTCGGTCGACAGCTGGCGGACGGGCCAACCGGGACTAAAG-------------------------------GTC------
----CCCGAAGGCCTTTAGTCGCGGTTGGCCAGGCCAACCG---------------------------------------
-------------------------------------------------GGACTAAAGGCCCATCCCTATATATAGGACT
CAGCTCACTTCACTTCACTCAGCTCACTTCACAATTTTCAGAAGGGGGTGGTGGGTTTGCTTTTGGTTTCTCCTATGCAC
ACAAGGTGTTCGATGAAATGCCCGAGAGCCTGAAACAAACATGATATGAAGTGTCCGAGCCACACTTGAGCTTTCTCATT
TATTTTTCCTCCGCGATCGCGGTTAGCAACTTGAACCTTTCATGTGTCATTGATAAAATATGCATGTGTGTAGTTCATTG
TTTAATTTGTATTATTTCTAGCTAGTTAGTTTAACAAATGCATGATGGTTAATTATATACTTTATATAATAATAATGCAG
ATGAATCGGCAATGGAT
>chr3A_244
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---ATCCGTATGTACGCCGGTAAAGTTGTGCCATGATCTAGGCTGTCCGTTTTCGATCCAACAAAAATATAGTTATGTTC
TGC----AAGAAAAAGAAACTGGAAACGTGATGGGTCGAAGGTGCCCTTG-GGCCTTGGCCAGCGTGACTCGGCTAGCAG
GGGCAAAAGGGGAATTAATCCGCAGAACCGACGTA------------CC--GCCCGCCGGCGATCCCGGCTATATATACC
TTCCCCCGGCCGCTTCCCCCTCCTCCCCCGGCCGTATATAAGCACCCAGATTCGAATTTCGCCGCTCCTCCTCCCCGTCC
ACGCGCGATCCCGCTC-----TCCCCTCCCGGACCTCGCCGGCAAGCAAGCTCCAAGGCCTTGCCGGC----CCGTCCGC
GGCCCCAGATCCGAAGCGGCTACCAGTACCAGCGCGCCCGCAGCCGATCGACCACCCCGCCGGCCGGTAAGAGCGCG---
---CCGGCCTTTCTTCGCG-------------------------------------------------------------
--------------------------------------------------------------------------------
------------GTTGCTTTCCGG-GTGGAGGGCTTTTGGTTGCCGGGGGCCGCGGGGGTTGATTGGTTCGGCGGAGGCG
CCGCGGGGGACGTCTAGGGTTT------CTGAACTCTGACGCTTACTGTTGATTGATCAACAGGGACAGGGCCACCCGGA
GGTCAGGGGAGGAGGGATGGCGACGGAGGCGTTGGAGATGTACCGGCAGTCGGAGATCGGCTACGCCCTCACCGAGACGC
TGGACAAGATGGTGAGCAGCGGCGTGCTCAGCCCCGACCTCGCCATCACCGTCCTCCTGCAGTTCGACAAGGTCC-----
-CCTCCCTCCCCCTTGCTGCTCCTGCAATAAACTTATCAATCAGCATGTCCTGCAATAAACAAACTGCATGCATGCCGGA
TGTTTTGATCC--------------TGGTC---TTGTTGTTTCAGTCCATGGGACACGCGCTGGATAAGCATGTCAAGAG
CAGGGCCTTCTTCAAGGT-----ACC-AACCAACCAAATTGCCTACTCTCTTGTGCTAT----GCATTCAT----CCATC
CCTGTGATTGTCAT------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GTAGTACAGGTTTAATTTGTTTCAAGGGAATAATGCAC--TCATGCTGAAATACCTT---G
CTGTTGCTACCTGTTACTGATAATGCAGATCAGCTACACATTTTTCTTTGTCTTCTGCTTGATGCTATGTATGACGTACG
ACTTGTGTGCT---TAATTATCAAGTAAATTGCTCTGCGTGTTATTTTCCAGTTCTTTATTGAGGAGCAGATTTATATAT
ACTTCTCCGGAAAAAGATACCTGAACT-----------TGCGTGTGTGCTAGATAGCCAAATTACGACAGTTTGTTTAAC
CTCAGTTGGGTGATAAGTTAACACATGTTCCAGGAGATCTGTTTGCTTTGGTCCAAAAAA--------------TAAATT
AAAAATGTAACTGTATATGTGCTCATGT-----------------------------TGATTGCTTAGACTATCAGAGGG
TAAACTGTC----------------------------CCTTTCCTGTTCCTGACTTATA-----TCTGGACCTACTGGAT
GTTTTCATTCTTAACTTGACATATCACGATAGTTTCTCGCAATAGTTTCCAAGTAGTATTTGATCTTTCTTGCCGATCGA
GTTTCCGAGAACAGACTTATGTGTTCCACTGTATTAGCGACACAAGAAGAGGGGACCTCCTTTCCTGTATCC-CAG----
----CCGGGAAACAATTCTGGAAACAACAACCATTTTTTGCATGTTTCTGGCATGCCATCTAA---------------CA
GAAAGCTAT---------------------------------------------------------ACTTTTCTACATGG
CAATAGCTTAACTCAAATAGTTCACCTCGCTAGTAT----TTCAGTCAATTTCTGAATATTTTGTCTTCACAATGTTGCA
ATCTCTAGTCATGTTTCCATCCATACATTGATTTCATTCACATGATTGTTTTCCTCTTGTCTTGACAGCGAGGCAATCTG
CGCACATACAGGAACTGCGATGACGTCTGGACATTAATCTTGAGAGACGTGACGTTCAAGAACGAGGATATCGAAACAGT
CCTCCACAAAGTGAAGATCGTCGCCTGCGATTCTGCTGTGCTTAAGAAGCCTCTCAAACCTATTACTTGCCATCAGTGCC
AACCATAGTCCACTTCATGATGCACCAGGCGCCATCCCCAAACTACGGCTTATGGAGCATCTAGGCAACTTCCATTGTGC
TAGAGAATGGTATTTGTGAAGTTGTTATTGTTTGCATCGCCACTGGAATGATGGTTTCGCTCTTTCGTGTCAATAACATA
ACTTATGGATGAGTGGAACGACGAATAGAATGTGTCATCTTTGTGATTTTCTGTATTCAAATACACATATCCTTACACAA
AGTAGATCTGGAACTATATATATGTAATAAGCACTACATAGTACATACAGACAGAACTATTTACAAGTTGAAAGTGAACA
TTTACTCCAAGGACAGCTGCTGAGAGTGGAACTTGAGCTCGTTGTTGAAGCTTTGTAACACGAACTGCTCCTCCGTGATG
AGAATCGTCACGCTGCACTCCGACTTGGAGAATGAC--------------------------------------------
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-----------------
>chr3B_244
--------------------------------------------------------------------------------
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---ATCCGTATGTACGCCGGTAAAGTTGTGCCATGATCTAGGCTGTCCGTTTTCGATCCAACGACAGTGTAGTTGTGTTT
TGC----AAGAAAAAAATACTGTAAACGTGATGGGTCGAAGGTGCCCTTG-GGGCCTTGCCAGCGTGACTAGGCCATCAG
GGGCAAAAGGGGAATTGACCCGGAGAACCGACGTAGCAGGAGGCTCCCC--GCCCGCCTCCGATCCGGGCTATATATAGC
TTCCCCCGGCCGCGTCCTCCTGTGCCCCCGTCCCTATATAAGCACGCAGATTCGAATTCCGCCGCTTCTCCTCCCCG---
---CGCGAACCCGCCCGCCCGTCCCCTCCCGGACCTCGCCGGCAAGCAATCTCCAAGGCCTCGCC-----GGCCGTCTGC
GGCGCCAGATCAGAAGCGGCTACCAGTGA------GCCCGCAGCCGATCGACCACCACGCCGGCCGGTAAGACTGCCCAC
TGCCCCGCCTTTCTTCGCG-------------------------------------------------------------
--------------------------------------------------------------------------------
------------GTTGCTTTCGGA-GTGGGGG--TTTTGTTTGCCGGGAGCCATGGGGCTTGATTGATTCGGCGTC----
----------CGTCTAGGGTTTCGCTACCTGAACTCTGACGCTTAGTGTTGATTGACCAACAGGGACA------------
-----GGGGAGGAGGGATGGCGACGGAGGCGTTCGAGATGTACCGGCAGTCGGAGATCGGCTACGCCCTCACCGAGACGC
TGGACGAGATGGTGAGCAGCGGCGTGCTCAGCCCCGACCTCGCCATCACCGTCCTCCTGCAGTTCGACAAGGTCCGTCCC
TCTTCCCTTCCACATGCTAGGCAGCACTGGTTTGGTTCCTCAGCATGCCTGCTACTAGC---------------------
TGTTTTGATGCTGTATCTGTATGGGTGGTCTTGTTGTTGTTTCAGTCCATGGGACACGCGCTGGATAAGCATGTCAAGAG
CAGGGCCTTCTTCAAGGTACCCAACC-AACCAACCAAATTGCCTACTCTCTTGTGCTATATATGCATTCAT----CCATC
CCTGTCATTGTCATCTACTCCCTCCGTTCCTAAATACTTGTCTTTCTAGAGATTTCAACAAGTGACTACATACGGCGCAA
AATGAGTGAATCTACACTTTAAAATATGTCTACATACATCCGTATGTTGAGTCCATTTGAAATGACTAGAAAGACAAGTA
TTTGGGAACGGAGGGAGTAGTACAGG--------TTTGTTTCATGCATGCTGGAACAATGCATGCTCAAATACCTTGCTG
CTGTTGCTACCTGTTACTGATAATGCAGATCAGCTACACATTTGTTTTTGTCTTCTGCATGATGCTATGTATGACGTACG
ACGACTTATA----------------------------------------------------------------------
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-------------------------------------------------------TATA-----TCTGGACCTACTGGAT
GATTTCATTCTTAACTTGACATATGACGATAGTTTCTCGCAATAGTTTCCAACTAGTATTTGATCTTTTTTGCCGATCGA
GTTTCCGACAACAGACTTATGTGTTCCACTGTATTAGCGACGCAAGCAGAGGGGACCTCCTTTTCTGTATCCACAG----
----CCGGGAAACAATTCTGGAAACAACCACCATTTTTTGCATGTTTCTGGCATGCATCTAGGTGATGCTGTTTGTTTCA
GAAAGCTAT---------------------------------------------------------GCTTTTCTACATGG
CAATAACTTAACTCTAATAGTTCACCTGGCTAGTATATATTTCAGTCAATTTCACAATATTTTGTCTTCACAATATTGCA
ATCTATAGTCATGTTTCCATCCATACATTGATTTCATTCACATGATTGTTTTTCTCTTGTCTTGACAGCGCGGCAATCTG
CGCACATACAGGAACTGCGATGACGTCTGGACATTAATCTTGAGAGACGTGACGTTCAAGAACGAGGATATCGAAACAGT
CCTCCACAAAGTGAAGATCGTCGCCTGCGATTCTGCTGCGCTTAAGAAGCCTCTCGAACCTATTACTTGCCATCAGTGCC
AACCATAGTCCACTTCATGATACACCAGGCGCCATCCCCAAACTAAACAGACAGAACTATTGACAAGT------------
--------------------------------------------------------------------------------
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--TAGATATGGAACTATATATATGTAATAAGCACTACATACTACATACAGACAGAACTATTGACAAGTTGAAAGTGAACA
TTTACTCCAAGGGCAGCTGCTGAGAGTGGAACTTGAGCTCGTTGTGGAAGCTTTGTAACACGAACTGCTCCTCCGTGATG
AGAATCGTCACGCTGCACTCCGACTTGGAGAATGAC--------------------------------------------
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>chr3A_1447
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------------------------------------------------TGTCTTCTGCTTGATGCTATGTGTGACGACC-
---TGTGTGCT---TAATTATCAAGTAAATTGCTTGGCATGCTATTTTCCAGCTCTTCGTTTAGGAGCAGAGG----TAT
ACTTCTCCGGAAAAAGATACCTGAACAAGAATTATCTGTGCTTGTGTGCTTAATAGCCAAATTATGACAGTTTGTTAAAC
CTCAATTGTGTGATAAGTTAACACATGTTCCAGGAGATCTGTTTGCTTTGGTCTGAAAAA--------------TATAT-
--------------------GCTGATGT-----------------------------TAACTGCTTAGTTTAACAGAGGG
TAAATTGTCCGCGACATGCAAGCGTGTCGATTAATTTCCTTTCACGTTCCTGTTGCTGACTTATTCTGGACCTACTGGAT
GATTTTATTCTTAACTGTACATATC---ATAGTTTCTCGCAATCGTTTCCATGTAGTATTTGAACTTTTTTGCTGAGTTC
TG----GAAAACAGACTTACGTGTTCCACTTTATTAGCAACACAAGCAGAA--GACCTCCTTTTCTGTATCC-CAAGTTC
CCAACCGGGAAATGATTCTGCAAACAGCAACCATTTTTTGCATGGTTCTGGCATGCATCTAGGTGATGCTGTTTATTTCA
GAAAGCAATCATCCAGTAGGTCCAGATATAGGTCAGGAACAGGAACAGGAAAGGAAATTAATCCACACATTTGCATATGT
CAATAGCTTCACTCAAGTAGCTCTGG------------------------------ATATTTTGACTTCACAATGTTGCA
ATCGGTAGTCATGTTTCCATTCATAAATTGATTTCATTCACATGATTGTTTTCCTCTTGT----ACAGGGCGGCAATCTG
CGCACGTACAGGTTCTGCAACGACGTATGGACTTTAATCTAGAGAGACGTGACGTTCAAGAATGAGGATATCGAAACAGT
CCTCCACAATGTGAAGATCGTCGCCTGCGATTCCGCTGCGCTTAAGAAGCCTCTCGAACCTATTACTTGCCATCAGTGCC
AACCATAG------------------------------------------------------------------------
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>chr7D_2812
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---------------------------GAGAATGAGCACTAGTAGAAAAAAAGGCTTCCATACGCCCCCATTAGTCCCCA
AAACAATCGAACCGCGACAAAAGGGGCCTTTAGTCGCGGTTCGGGAGGAGACCCGCGACCAACTATCTGGGCCCAGCGCG
CTCGGTCGACAGCTGGCGGACGGGAGGGGCTTT-----AGTCCCGGTTGGCCTGGCCAACCGGGACTAAAGGTC------
----CCCGAAGGCCTTTAGTCGCGGTTGGCCAGGCCAACCGGGGCTAAAGGCCCATCCAGCTGGCGGACGGGGCCAACCG
GGACTAAAGGTCCCCGAAGGCCTTTAGTCGCGGTTGGCCAGGCCAACCGGGACTAAAGGCCCATCCCTATATATAGGACT
CAGCTCACTTCACTTCACTCAGCTCACTTCACAATTTTCAGAAGGGGGTGGTGGGTTTGCTTTTGGTTCCTCCTATGCAC
ACAAGGTGTTCGATGAAATGCCCGAGAGCCTGAAACAAACATGATATGAAGTGTCCGAGCCACACTTGAGCTTTCTCATT
TATTTTTCCTCCGCGATCGCGGTTAGCAACTTGAACCTTTCATGTGTCATTGATAAAATATGCATGTGTGTAGTTCATTG
TTTAATTTGTATTATTTCTAGCTAGTTAGTTTAACAAATGCATGATGGTTAATTATATACTTTATATAATAATAATGCAG
ATGAATCGGCAATGGAT
>chr7D_2819
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----------------------------------ACCACTAGTAGAAAAAGAGGCTTCCATACGCCCCCATTAGTCCCCA
AAACAATCGAACCACGACAAAAGGGGCCTTTAGTCGTGGTTCGGGAGGAGACCCGCGACCAACTATCTGGGCCCAGCGCG
CTCGGTCGACAGCTGGCGGACGGGAGGGGCTTT-----AG-------------------------------GTC------
----CCCGAAGGCCTTTAGTCGCGGTTGGCCAGGCCAACCG---------------------------------------
-------------------------------------------------GGACTAAAGGCCCATCCCTATATATAGGACT
CAGCTCACTTCACTTCACTCAGCTCACTTCACAATTTTCAGAAGGGGGTGGTGGGTTTGCTTTTGGTTCCTCCTATGCAC
ACAAGGTGTTCAATGAAATGCCCGAGAGCCTGAAACAAACATGATATGAAGTGTCCGAGCCACACTTGAGCTTTCTCATT
TATTTTTCCTCCGCGATCGCGGTTAGCAACTTGAACCTTTCATGTGTCATTGATAAAATACGCATGTGTATAGTTCATTG
TTTAATTTGTATTATTTCTAGCTAGTTAGTTTAACAAATGCATGATGGTTAATTATATACTTTATATAATAATAATGCAG
ATGAATCGGCAATGGAT
>chr7D_2821
--------------------------------------------------------------------------------
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------------------------------------CACTAGTAGAAAAAGAGGCTTCCATACGCCCCCATTAGTCCCCA
AAATAATCGAACCGCGACAAAAGGGGTCTTTAATCGCGGTTCGGGAGGAGACCCGCGACCAACTATCTGGGCCCAGCGCG
CTCGGTCGACAGCTGGCGGACGGGAGG----------------------------CCAACCGGGACTAAAG--C------
----CCCGAAGGCCTTTAGTCGCGGTTGGCCAGGCCAACCG---------------------------------------
-------------------------------------------------GGACTAAAGGCCCATCCCTATATATAGGACT
CAGCTCACTTCACTTCACTCAGCTCACTTCACAATATTCAGAAGGGGGTGGTGGGTTTGCTTTTGGTTCCTCCTATGCAC
ACAAGGTGTTCGATGAAATGCCCGAGAGCCTGAAACAAACATGATATGAAGTGTCCGAGCCACACTTGAGCTTTCTCATT
TATTTTTCCTCCGCGATCGCGGTTAGCAACTTGAACCTTTCATGTGTCATTGATAAAATATGCATGTGTGTAGTTCATTG
TTTAATTTGTATTATTTCTAGCTAGTTAGTTTAACAAATGCATGATGGTTA----TATACTTTATATAATAATAATGCAG
ATGAATCGGCAATGGAT
>chr7D_2821
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------------------------------------CACTGGTAGAAAAAGAGGCTTCCATACGCTCCCATTAGTCCCTA
AAATAATCGAACCGCGATCAAAGGGGTCTTTAGTCGCGGTTCGGGAGGAGACCCGCGACCAACTATCTGGGCCCAGCGCG
CTCGGTCGACAGCTGGCGGACGGG-GG----------------------------CCAACCGGGACTAAAGGTCCTCAGG
CTGGCCCGAAGGCCTTTAGTTGCGGTTGGCCAGGCCAACCG---------------------------------------
-------------------------------------------------GGACTAAAGGCCCATCCCTATATATAGGACT
CAGCTCACTTCACTTAGCCACA-------------ATTCAGAAGGGGGTGGTGGGTTTGCTTTTGGTTCCTCCTATGCAC
ACAAGGTGTTCGATGAAATGCCCGAGAGCATGAAACAAACATGATATGAAGTGTCCGAGCCACACTTGAGCTTTCTCATT
TATTTTTCCTCCGCGATCGCGGTTAGCAACTTGAACCTTTCATGTGTCATTGATAAAATATGCATGTGTGTAGTTCATTG
TTTAATTTGTATTATTTCTAGCTAGTTAGTTTAACAAATGCATGATGGTTAATTATATACTTTATATAATAATAATGCAG
ATGAATCGGCAATGGAT
>chr1D_2821
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------------------------------------CACTAGTAGAAAAAGAGGCTTCCGTACGCCCCCATTAGTCCCCA
AAACAATCGAACCGCGACAAAAGGGGACTTTAGTCGCGGTTCGGGAGGAGACCCGCGACCAACTATCTAGGCCCAGCGCG
CTCGGTCGACAGCTGGCGGACGGGAGGGGCTTT-----AGTCCCGGTTGGCCTGGCCAACCGGGACTAAAGGTC------
----CCCGAAGGCCTTTAGTCGCGGTTGGCCAGGCCAACCG---------------------------------------
-------------------------------------------------GGACTAAAGGCCCATCCCTATATATAGGACT
CAGCTCACTTCACTTCACTCAGCTCACTTCACAATTTTCAGAAGGGGGTGGTGGGTTTGCTTTTGGTTCCTCCTATGCAC
ACAAGGTGTTCGATGAAATGCCCGAGAGCCTGAAACAAACATGATATGAAGTGTCCGAGCCACACTTGAGCTTTCTCATT
TATTTTTCCTCCGCGATCGCGGTTAGCAACTTGAACCTTTCATGTGTCATTGATAAAATATGCATGTGTGTAGTTCATTG
TTTAATTTGTATTATTTCTAGCTAGTTAGTTTAACAAATGCATGATGGTTAATTATATACTTTATATAATAATAATGCAG
ATGAATCGGCAATGGAT
>chr3D_2824
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---------------------------------------TAGTAGAAAAAGAGGCTTCCATACGCCCCCATTAGTCCCCA
AAACAATCGAACCGCGATAAAAGGGGCCTTTAGTCGCGGTTCGGGAGGAGACCCGCGACCAACTATCTGGGCCCAGCGCG
CTCGGTCGACAGCTGGCGGACGGGAGGGGC--------------------------CAACCGGGACTAAAGGTC------
----CCTGAAGGCCTTTAGTCGCGGTTGGCCAGGCCAACCG---------------------------------------
-------------------------------------------------GGACTAAAGGCCCATCCCTATATATAGGACT
CAGCTCACTTCACTTCACTCAGCTCACTTCACAATTTTCAGAAGGGGGTGGTGGGTTTGCTTTTGGTTCCTCCTATGCAC
ACAAGGTGTTCGATGAAATGCCCGAGAGCCTGAAACAAACATGATATGAAGTGTCCGAGCCACACTTGAGCTTTCTCATT
TATTTTTCCTCCGCGATCGCAGTTAGCAACTTGAACCTTTCATGTGTCATTGATAAAATATGCATGTGTGTAGTTCATTG
TTTAATTTGTATTATTTCTAGCTAGTTAGTTTAACAAATGCATGATGGTTAATTATATACTTTATATAATAATAATGCAG
ATGAATCGGCAATGGAT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS--------------S----------S---S----------S--------S----S---S-S-----S--S-------
---SSSS-S-S-----S------S--SS-S----------SS-----SS-S-----------------------------
-----S-------------------------------------------SS-----------S-----------------
--------------------------------------------------------------------------------
---------------S--------S-------------------------------------------SS----------
---------S-S----------S----------------------------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS------------S-----------------SS----------------------------S----S--
---------------------------------------S------------------S---------------------
-----S--S------------------------------------------------------------S--S-------
--------------------------------------------------------------------------SSSS--
SSS-SS---SSSS-SSS-----------------S--------SSSSS-SSS-SSS--SSSSS-----------------
--------------------------------------------------------------------------------
--------------------------S--------------------------------------------SSSS-----
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
S----------SSS---------------------------------------------------S--------------
--------------------------------------------------------------------------------
-----------------------------------------S-----S------------SSSSSSSSSSSSSS---S--
----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S--------------
---------S---------S--S----S------S---------------------------------------------
--------------------------------------------------------------------------------
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
-----S------------------------------------------------------------S-------------
-------------------S--------------S---------------------------------------------
----------------------------------------------------S---------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------SSSSS-SSSSSSSS------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
>forward_958
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GTTGATTGATTCGGAGGCGC--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
>reverse_2090
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TGCGACATGCTAGTGTGTGG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
>forward_1773
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------ACGTACG
GCTTGTGTGCTTA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
>reverse_3141
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CGAGAGTGGAACTTGAGCTCG---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
