>input_sequence_52788
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----------------------------------ATGGGCGAGGACAAGAAGGAGAAGCCGGGCAAGGCAGACGGCGGCG
ACCAGAAGAAGGACGCCGCGGCGGCGGCCCAGCCCATCGTGCTCAAGGTCGACTTGCATTGCGCCGGCTGCGCCACCAAG
GTTAAGCGGGCCATCAAGAACGCCCCTGGTACGCCTGCCTCTTCCTTTCATTCACTTGGTCTCCGCCTCC-----TTACG
GTTCCATTCTTTGTGCTACGACTGATTTCT----GACCGTTTGCCT----TTGCTTCTCCGTAGGCGTGGAGTCGGTTAA
GACTGACACGGCGGCCAACAAGGTGGTCGTCACCGGCGCCGCGGACGCGGCGGAGATCAAAGAGCGCATCGAGGCCAGGA
CCAAGAAGCCCGTTCAAATCGTCTCCGCCGGAGCCGCCTCGCCCAACAAGGACAACAAGGAGAAAGACAAGGACAAGAAG
CCCGACGCCGGCGATAAGCCGGAGAAAGAGAAGAGCAAGGCAGCAGACAAGGAGAAGGGCGGTGCCGGTGCCGGTGCTGA
GAAAAAAGAGAAAAAAGTGGAAACCGCCGACAAGCCCAAGGAGGAGGAGAAGAAACCAAAGGAGCCCAAAGAGGTCCGTC
CCTGGCTCGACG-----------------ACTCTGTTATATGGAGTAGTTAGTTACTTGCAGCCTGCAGGTGCTCTAAAT
GAAGATTTGGTCTCAAATTCATCTTGCCCTTTTTCCTTGATTCTATCAGGAGACGGTGACGCTCAAGATCAGGCTGCACT
GCGACGGCTGCATCGACCGCATCAAGCGGCGCGTCAACAAGATCAAAGGTCGGTTTTCTGTTTCTTCTTTTTGGCCGCAG
ATTCATTCCGGCCTGGAAGAAGGAATCATTCAGTTGAATCTTGCTGGAAACTGACTGACACCTTCCTTCTTCTCTTGTTT
TGTTTCTACGCAGGAGTGAAGGAAGTGACGGTGGACGCTGCCAAGGACCTGGTGAAGGTGACTGGCACCATGGACGCAGC
CGCCCTGCCGGGCTACCTCAGGGACAAGCTCAGTCGGCCGGTGGAGGTGGTCACCCCCGGCAAGAAGGACGGCGACAAGA
AAGACGACGGGGAGAAGAAGAAGGACAAGGG------CGCTGGCGAGGGCGGCGAAAAGAAGAAGGACGGCGGTGGCGGC
GGCGAGGACAAGAAGGACAAGTCCGCGGCGTCCGTGGCGCCGATGCCCATGGCGGACCCGAGCATGTACCAGATGCCCCC
ACAGTACGGCTACATGCCGTACCCCCCGGCGCCCGTCGGCTACTACGGCCCCGCCGCCCCGCCGCCGAACCCCGGCTTCT
ACCCGAACGCCGGGCCCCAGTACCCGCCGCCCTACGCGACGTACCCCGCCCACGCGCCCCAGATGTTCAGCGACGAGAAC
CCCAACGCCTGCTCCGTCATGTGA--------------------------------------------------------
--------------------------------------------------------------------------------
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----------
>chr1D_1_TraesCS1D01G139400
AAAACACTCGGGGCAAAGCATTTGAAATTTTTGGTTCCCAGAGTGTCCAGCGACGAGGGCGAGGAGTGTGCACACGTGGA
CCCCGGAAGCTAGCCTCCTCCCGGATCGACGCCGCTTGGCTTGGCTGCCCCGATTCCGCCTGCATGCGAGGTGAAGCAAG
CAACGGGCCGCCACCTGCTCGGCACCCAGCAGTAGTATTTGTATG------TGTCCACCTCAAACAGCCACGGGTTTGCA
GTAAAAGACGGCACCTACTTTTTTGGGTTTTTGCACGGCGTAGGAAACGGTG-----CCTGCCAGTGACTCGCAGA---A
TCCAAACCGCTCCTACAGTGAGTACGGTTCAACTATGGACTGCTAGAGAACGGAGACCTAC-----------TTTTCCAC
CGTTGCAATCACCTCCTC-------------ACTCCAACAGCACAGCACAGCACGCAGATATGTAGACCCGGCAGGTTCG
CAGGAAGCAGCATCAGCGT-CGTCTCTCTCTCCGGAG-AAATCAAACACAATGCGCATGGCAGGCTGAATTACGCTCCGT
CCTAGTTTAGTCTACGGTTCGCTCCGTTCCTAGTCATCAAGGGCCACGTGGAAATCGTAGTATG------CATGCAACGC
AACGAAGCAGCCAGGAAGACGAAG-GGAAGAGCCACGCATTGACCGGCCATTCAGCCAGCCTCAGCCGGGTCAG------
CAGTCCCAGTCAGCAACCTTCTACCCGGGTCTACACCCGACCGGACC-----CGTTTCCCACCGATCCAGACCCGGCCGC
CATTGCCACTCAAACTCTTCGCCCTTCTTCACTCCGCCCACCCACCTCACACAACTTGTTGCACTTGTACGGTACTACTC
TAC-----TCCCTCCTCCCGTAGTACTCTATTTAACACCGCCCCCACCCCACCTCTCCTGCTCCTTCATTCCAAGC----
-ACCACCTGCTCCTCTCCTCCAACCCACGCGCCC------ACGCACGCACTAACTACCTCCCTTCCCCGGAGCTCGGCGG
AGAGACAAGAAGCCAAGCCACCGCTACGTACGCCATGGGCGAGGACAAGAAGGAGAAGCCGGGCAAGGCAGACGGCGGCG
ACCAGAAGAAGGACGCCGCGGCGGCGGCCCAGCCCATCGTGCTCAAGGTCGACTTGCATTGCGCCGGCTGCGCCACCAAG
GTTAAGCGGGCCATCAAGAACGCCCCTGGTACGCCTGCCTCTTCCTTTCATTCACTTGGTCTCCGCCTCC-----TTACG
GTTCCATTCTTTGTGCTACGACTGATTTCT----GACCGTTTGCCT----TTGCTTCTCCGTAGGCGTGGAGTCGGTTAA
GACTGACACGGCGGCCAACAAGGTGGTCGTCACCGGCGCCGCGGACGCGGCGGAGATCAAAGAGCGCATCGAGGCCAGGA
CCAAGAAGCCCGTTCAAATCGTCTCCGCCGGAGCCGCCTCGCCCAACAAGGACAACAAGGAGAAAGACAAGGACAAGAAG
CCCGACGCCGGCGATAAGCCGGAGAAAGAGAAGAGCAAGGCAGCAGACAAGGAGAAGGGCGGTGCCGGTGCCGGTGCTGA
GAAAAAAGAGAAAAAAGTGGAAACCGCCGACAAGCCCAAGGAGGAGGAGAAGAAACCAAAGGAGCCCAAAGAGGTCCGTC
CCTGGCTCGACG-----------------ACTCTGTTATATGGAGTAGTTAGTTACTTGCAGCCTGCAGGTGCTCTAAAT
GAAGATTTGGTCTCAAATTCATCTTGCCCTTTTTCCTTGATTCTATCAGGAGACGGTGACGCTCAAGATCAGGCTGCACT
GCGACGGCTGCATCGACCGCATCAAGCGGCGCGTCAACAAGATCAAAGGTCGGTTTTCTGTTTCTTCTTTTTGGCCGCAG
ATTCATTCCGGCCTGGAAGAAGGAATCATTCAGTTGAATCTTGCTGGAAACTGACTGACACCTTCCTTCTTCTCTTGTTT
TGTTTCTACGCAGGAGTGAAGGAAGTGACGGTGGACGCTGCCAAGGACCTGGTGAAGGTGACTGGCACCATGGACGCAGC
CGCCCTGCCGGGCTACCTCAGGGACAAGCTCAGTCGGCCGGTGGAGGTGGTCACCCCCGGCAAGAAGGACGGCGACAAGA
AAGACGACGGGGAGAAGAAGAAGGACAAGGG------CGCTGGCGAGGGCGGCGAAAAGAAGAAGGACGGCGGTGGCGGC
GGCGAGGACAAGAAGGACAAGTCCGCGGCGTCCGTGGCGCCGATGCCCATGGCGGACCCGAGCATGTACCAGATGCCCCC
ACAGTACGGCTACATGCCGTACCCCCCGGCGCCCGTCGGCTACTACGGCCCCGCCGCCCCGCCGCCGAACCCCGGCTTCT
ACCCGAACGCCGGGCCCCAGTACCCGCCGCCCTACGCGACGTACCCCGCCCACGCGCCCCAGATGTTCAGCGACGAGAAC
CCCAACGCCTGCTCCGTCATGTGAGCAGCCACGCCACGCCACGCCACGAGCCGACGAGCACGACGCGAAGCCCAGGCTCG
CTGCCGCAGCATCAGTTATCAAACCAGAGAAGCACGGCCTGGGCTTAGCGCGCGGTACCATTAGCCTAGCTAGCAGCTGG
TAGTTACGTAGCTTAGCGCACCGAGAATTAGCAGACATGTAAATGGCGACAGCGATCCCGTCCCGCGATGT----TAATG
TAATGTTCCACGATCCATCCGACAAATTTTGGCCCTGCACTCGTTAATTATT-----ACAGTCGTTGTTGTCATGGCCGC
CATGAATCGGTGCTCCATTAACGGTTCCGTGAACTGGTGGCGCGTCGCTGTTGCCTG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TGAGGTCATCGACGTTGATCAGTGGC
AATGGCAATGCCATTTTCGTCTTCCGGAGGGTTCGAGACGGCGCCTCTTGCGTCGGCCTTCTTTCTTCGGCCCCAAGGGT
TTGTTTTATCTCGATGGTTCGGGTCGTCAGTGCGGTAATCGATTAGCGTGAGACGAGGACGTCTTGGATGTTTGCTTGCG
GCACTGTCACGGCGTGT---TTTATTTTATATGCGGTGCTAGCGTGAGATGGTGTGGCTAATTAATCATATCTCTGTCCA
TTGTTTAGCGCTGATCCGCCCTGTCATGTTCTTGCGTGGTATCAAGCTACGCAGTGGCGACGTTGGTCTCTTCTCTGTGG
AGTTCAGTGACAGGGATGTTCAAGTTATTTTAACCATAC--------GTGTGTTTCATCTGACAG------CGCCACCGT
GGAGTATTCTAGTGCTTGTAGGCGGATTTGCTAGTAGGGATGGTGTTTTACTATGTGCTGGTTTGCGGCTGCGAGTTTCT
GAAACAAGCCTGTGCCTAGGAGCTTCTGAGAT---TGATAGTTGTACAAGTGGCTCAAGGGCGTACGACATGTGTAGGAA
ACCGGTCGATCTCGGACACACAATGAGACAACACACGGCATTCCAACACACGAATAGATTATGTTAAAAAAAACACGAAT
AGATTTTTTT
>chr1B_2
AAACACTGAGGC---AAGCATTTGAAAATTTTGGTTCCCAAACTGTGCAGCGACGAGGAGGA---------------GGA
CTCCGGAAGCTAGCCTCCTCCCGGATCGACGCCGCTTGGCTTGGCTGCCCCGATTCCGCCTGTCT-----------CAAG
CAACGGGCCGCCACCTGCTCAGCACTCACCACTAGTA-------------------ACCTGAAACAGGCACGGGTTTGCA
GTAAAAGATGGCAC-TACTTTTTTTGGTTTTTGCCCTGCCCTGCCCTGC---CCTGCCCTGCCAGTGAGTCGCAAAATCA
TCCAAACTCCTCCTACAGTAGTACCCACTGCCAGAGAATCAATATCG--ATCGAGACCTACTACTTTTCATGTTTTCCAC
CGTTGCAATCACCTCCTC-------------ACTCGGACAGCACAG-----CACGCAGATATGTAGACCCGGCAGGTTCG
CAGGAAGCAGCG--------------TCTCTCCAGAGAAAATCAAACACAATGCGCATGGCAGGCTGAATTAC-------
---AGTCTAGTCTACGGCTTGCTCCATTCCTAGTCATCAAGGGCCACGTGGAAATCGTAGTATG------CAT-----GC
AACGAAGCAGCCAGGAAGACGAAGAGGAA-----------------------CACCCAGGCTTAGCCGGGTCAGCCATCC
CAGTCCCAGTCAGCAACCTCCCACCCGGGTCTCCACCCGA-----CC-----CGTTTCCCACCGATCCAGACCCGGCCGC
CATTGCCACTCAAACTCTGCGCTCTCCTTCACTCCGCCCACCCACCTCACACAAGTTGTTGTAGTTGTACGGTACTCTAC
TCCCGGCATCCCTCCTCC---------CTATTTAACACCGCCCCCACCCCACCTCTCCTGCCCCTTCATTCCAAGCACAA
TACCACCTGCTCCTCTCCTCCAACCCACGCGCCCGCGCCCACGCACGCACTAACTACCTCCCTCCCCCGGAGCTCCGTCA
A------------------------------GCCATGGGCGAGGACAAGAAGGAGAAGCCGGGCAAGGCAGACGGCGCCG
ACCACAACAAGGACGCCGCGGCGCCGCCCGAGCCCATCGTGCTCAAGGTCGACTTGCATTGCGCCGGCTGCGCCACCAAG
GTTAAGCGGGCCATCAAGAACGCCCCTGGTACGTCTGCTTCTTCCTTTCATTCATTTCCATTCCACCTCCTTAAATTACG
GTTCCATTCTTTCTGCTACCACTGATTTCTTTCTCACCGTTTGCCT----TTGCTTCTCCGCAGGCGTGGAGTCGGTTAA
GACTGACACGGCGGCCAACAAGGTGGTCGTCACCGGCGCGGTGGACGCGGCGGAGATCAAACAGCGCATCGAGGCCAGGA
CCAAGAAGCCCGTTCAAATCGTCTCCGCCGGAGCCGCCTCGCCCAACAAGGACAACAAGGAGAAAGGCAAGGACAACAAG
GCGGACGCCGGCGATAAGCCGGAGAAAGAGAAGAGCAAGGCAGCAGAAAAGGAGAAGGGCGGTGCCGGTGCCGGTGCTGA
GAAAAAGGAGAAAAAAGTGGAAACCGCCGACAAGCCCAAGGAGGAGGAGAAGAAACCAAAGGAGCCCAAAGAGGTTCGTC
CCTGGGCTCGCTGACTACTGTAGAATTCAACTCTGTGATATGC---AGTTAGTTACTTGCAG-------GTGTTGTAAAT
GAAGATTTGGTCTCAAATTCATCTTGCCATTTTTCCTTGATTCCATCAGGAGACCGTGACGCTCAAGATCAGGCTGCACT
GCGACGGCTGCATCGACCGCATCAAGCGCCGCGTCAACAAGATCAAAGGTCAGTTTTCTGTTTCTTCCTTTTGGCCGCAG
ATTCATTCCGGCCTGGTAGAAGGAATCATTCGATTCAATTTTGCTAGAAACTGACTGACACCTTC----TTCTCTTGTTT
TGTTTCTAT--AGGAGTGAAGGAAGTGACGGTGGACGCGGCCAAGGACCTGGTGAAGGTGACTGGCACCATGGACGCAGC
CGCCCTGCCGGGCTACCTCAGAGACAAGCTCAGTCGGCCTGTGGAGGTCGTCACCCCTGGCAAGAAGGACGGCGACAAGA
AAGACGACGGCGAGAAGAAGAAGGACAAGGG------AGCCGGCGACGGTGGCGAAAAGAAGAAGGAC------GGCGGT
GGCGAGGACAAGAAGGACAAGTCCGCGGCGTCCGTGGCGCCGATGCCCATGGCGGACCCGAGCATGTACCAGATGCCCCC
ACAGTACGGCTACATGCCGTACCCCCCGGCGCCCGTCGGCTACTACGGCGCGGCGCCGCCGCCGCCGAACCCGGGCTTCT
ACCCGAACGCCGGTCCCCAGTACCCGCCGCCCTACGCGACGTACCCCGCCCACGCGCCCCAGATGTTCAGCGACGAGAAC
CCCAACGCCTGCTCCGTCATGTGAGC---------------CGCCACGGGCCGACGAGCACGACGCGAAGCCCAGGCTCG
CCGTCGCAGCATCAACTGTCAAACCAGAGAAGCACGGCCTGGGCTTAGCGAGCGGTACCATTAGCCTAGCTAGCAGCA--
-AGTTACGTAGCTTAGCGCACCGAGAATTAGCAGACATGTAAATGGCGACAGCGATCCCGCCCCGCAATGTAATGT----
------TCCATGATCCATCCGATAAATTTTGGCCCTGCACTCGTTAATTATAACATAACAATCGTTGTTGTCATGGCCGT
CATGAATCGGTGCTCCATTAACGGTTCCATGAACTGGTGGCGCGTCGCTGTTGCCTG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TGAGGTCATCGACGTTGATCAGTGGC
AAC------GCCATTTTCGTCTTCCGGAGGGTTCGAGACGGCGCCTCTTGCGTCGGCCTTCTTTTCTCGGCTCCAAGGGT
TTGTTTTATCTCGATGGTTCGGGTCGTGAGTGCGGTGATCGATTAGCGTGAGACGAGGACGTCTTGGATGTTTGCTTGCG
GCACTGTCACGGCGTGT---TTTATTT-ATATGCGGTGCTAGCGTGGGATGGTGTGGCTAATTAATCATATCTCTACCCA
TTGTTTAGCGCTAATCAGGCTACGCAGT-------------------------GTGGCGACGTTGGTCTCTTCTCTGTGG
AGTTCAGTGACGGGGATGTTCAAGTTATTTTAACTATATAGTACTATGTGTGTTTCATTTGACAG------CGCCAGCGT
GGAGTATTCTAGTGCTTCTAGGCGGATTTGCAAGTAGGGATGGTGTTTT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>chr1A_71
----------------------------------------------------------------------CACACGTGGA
GGCCGGTAGCTAGCCTCCTCCTTTATCGACGATTCCGCCTGCATCTGCATCTGCAT---CTGCATGCGAGGTGAAGCAAG
CAACGGGGCGCCACCTGCTCAGCACCCAGCACTAGTATTTGTATTTGTATTTGTCCACCGCAAGCAGCCACGGGTTTGCA
GTAAAAGACGGCACCTACTTTGTTGGGTTTTTGCACGGCGTAGGAAACGGTGCCTGCCCTGCCACTGACTCGCAGAATCA
TCCAAACCGCTCCTACTCAACC----------------------AGAGAATCGAGTCCTACT----------TTTTCCAC
CGTTGCAATCACCTCCCTCATCATCAGTCCAACTCCAACAGCACTG-----TATGTATACGGTCAGG---GGCAGGCTCG
CAGGAAGCAGCATGAATCAGCGTCTCTCTCTCCGGAG-AAATCAAACACAAT------------------TACGCTCCCT
CCTAATCTAGTCTACGGTTTGCTCCCTTCCTAGTCATCAAGGGCCACGTGGAAATCCTAGTATCCATGGCCAT-----GC
AACGAAGCAGCCAGGAAGACCAAGAGGAAGAGCCACGCATTGACCGGCCATTCAGCCAGGCTCAGCCGGG----------
---------TCAGCAACCTTCCACCCGGGTCTACACCCGA-----CCGGACCCGTTTCCCACCGATCCACACCCGGCCGC
CATTGCCACTCAAA---------CTCCTTCACTCCGCCCACCCACCTCACACAAGTTGTTG-------------------
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>chr1A_845
--------------------------------------------------------------------------------
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---------------------------CTATTTAACACCGCGCCCGCCCCACCTCTCCTGCCCCTTCATTCCAAGCAC--
---CACGTGCTCCTCTCCTCCAACCCACGCCCA--CGCCCACGCACTACCTCCCTCCCTCCCTCCCCCGGAGCTCC----
-----------GCCAAGCCACCGCAC----CGCCATGGGCGAGGACAAGAAGGAGAAGCCGGGCAAGGCTGACGGCGGCG
ACCACAAGAAGGACGCCGCGGCGCCGCGCCAGCCCATCGTGCTCAAGGTCGACTTGCATTGCGCCGGCTGCGCCACCAAG
GTTAAGCGGGCCATCAAGAACGCCCCTGGTACGCCTGCTTCTTTCTTTCAT---------------CTCC-----TTACG
GTTCCCTTCTCTGTAGGACTAGTGTAA--TTTCTGACCGTTTGCCTTAATTTGGTTCTCTGCAGGCGTGGAGTCGGTTAA
GACTGAGACGGCGGCAAACAAGGTGGTCGTCACCGGCGCGGCGGACGCGGCCGAGATCAAGGAGCGCATCGAGGCCAGGA
CCAAGAAGCCCGTTCAAATCGTCTCCGCCGGAGCCGCATCGCCCAACAAGGACAACAGGGACAAGGACAAGGACAACAAG
GCCGGCGCCGGCGATAAGCCGGAGAAAGAGAAGAGCAAGGCAGCAGACAAGGAGAAGGGCGGTGGCGGTGCCGGTGCTGA
GAAAAAAGAGAAAAAGGTGGAAGCCGCCGACAAGCCCAAGGAGGAGGAGAAGAAACCAAAGGAGCCCAAAGAGGTTCGTC
CCTGGGC--------TACTGTAGAATTCAACTCTGTGATATGC---AGTTAGTTACTTGCAG-------GTGTTGTAAAT
GAAGATTTGGTCTCATATTCATCTTGCCCTTTTTCCTTGATTCCATCAGGAGACCGTGACGCTCAAGATCAGGCTGCACT
GCGACGGCTGCATCGACCGCATCAAGCGCCGCGTCAACAAGATCAAAGGTCAGTTTTCTGTTTCTTCCTTTTGGCCGCAG
ATTCATTCCGACCTGGTACAAGGAATCATTTAGTTGGATCTTGCTGGAAACTGACTGACACCTTC----TTCTCTTGTTT
TGTTTCTACGCAGGAGTGAAGGAAGTGACGGTGGACGCTGCCAAGGACCTGGTGAAGGTGACTGGCACCATGGACACAGC
CGCCCTGCCGGGCTACCTCAGGGACAAGCTCAGTCGGCCGGTGGAGGTGGTCACCCCCGGCAAGAAGGACGGCGACAAGG
AAGACGACGGCGAGAAGAAGAAGGACAAGGGCGCTGGCGCTGGCGATGGCGGCGAAAAGAAG---GACGGCGGTGGCGGC
GGCGAGGACAAGAAGGACAAGTCCGCGGCGTCCGTGGCGCCGATGCCCATGGCGGACCCGAGCATGTACCAGATGCCCCC
ACAGTACGGCTACATGCCGTACCCCCCGGCGCCCGTCGGCTACTACGGCGCGGCGCCGCCGCCGCCGAACCCCGGCTTCT
ACCCGAACGCCGGGCCCCAGTACCCGTCGCCCTACGCGACGTACCCCGCCCACGCGCCCCAGATGTTCAGCGACGAGAAC
CCCAACGCCTGCTCCGTCATGTGAGCTGCCATGCCACGCCACGCCACGAGCCGATGAGCACGACGCCAAGCCCAGAGTCG
CCGCAAGCAGTATGA--ATCAAACCAGAGAAGCACGGCCTGGGTTTGGCGCGCGGTACCATTAGCCTAGCTAGCAGCTGG
TAGTTACGTAGCTTAGCGCACCGAGAATTAGCAGACATGTACATGGCGACAGCGATCCCGTCCCGCGATGTAATGTAATG
TAATGTTCCACGATCCATCCGATAAATTTTGGCCCTGCACTCGTTAATTATAACA-AACAATCGTTGTTGTCATGGCCAG
CATGAATCGGTGCTCCATTAACGGTTCCATGAACTGGTGGCGCGTCACTGTTGCCCGTGAGAGCATCTGCTACAGTTTAT
ATGTTAGCTTGTTGGTAAAATATGCCATGTCATCAAACAATATCTTAACATACAACATTTCAAATAGGTTGTATTTAGTA
TGCCCAATAAGATGTGAGATAATAAATAAGGTGCTCTTTCATTCTACATTGAAGCTTGTGTAATGGGTGTTGGTTTATTA
CATACAACATTTCTCTCTTTCCTCATTTATTGCATGACACATCATCAAAAATTCTATGTGATAAAGTCTACCAACAACTA
TCTTATAATCATTGAAGATCCCCTGAGGTCATCGACGTTTTCTTTTTTCTTTTTTGAGGTCATCGACGTTGATCAGTGGC
AAT------GCCATTTTCGTCTTCCGGGGGGTTCGAGACGGCGCCTCTTGCGTCGGCCATCTTTTTGCGGCTCGAAGGGT
TTGTTTTATCTCGATGGTTCGGGTCGTCAGTGCGGTGATCGATTAGCGTGAGACGACGACGTCTTGGATGTTTGCTTGCG
GCAGTGTCACGGCGTGTGTGTTTATTT-ATATGCGCTGCTAGTGTGGGATGGTGTGGCTAATTAATCATATCTCTACCCA
TTGTTTAGCGCTAATCCGTCTTGTCCTGTTCTTGCGTGGTGTCAAGCTACGCAGTGGAGACGTTGGTCTCTTCTCCGTGG
AGTTCAGTGACGGGGATGCTCAAGTTATTTTAACCATATAGTA-----TGTGTTTCATCTGACTGACAGCCCGCCACCGT
GGAGTATTCTAGTGCTTGTAGGCGGGTTTGCAAGTAGGGATGGTGTTTTTCTATGTGCTGGTTTGCGGCTGCGAGTTTCT
GAAACAAGTCCGTGCCTAGGAGCTTCCGAGATTGATGATAGCTCTACAAGTGGCT--------TACGCCATGTGTAGGAA
ACCGGTGGACATCAGACACACAATGAGACAACACACG-------------------------------------------
----------
>SNPs
---SSSSSS--SSSS------------S------------S-S---S-----------SS--SSSSSSSS----------
-S------------------------------------------------------------------------------
--------------------S----------S------------S-----------------------------------
--------------------------------------------------------------------------------
-------------------SSSSS-SSS-SSSSS-SSSS-SSSS------SS----------------------------
----------------------------------------------SSSSS-----------------------------
-------------S-SSSS-----------------------------------------------------------S-
------S------------S-----S-----------------------------------------------SSSSS--
-----------------------------------------------------------S--------------------
---------------------S------------------SSSSS-----------------------------------
------------------S---S--S----------------------------S------S-S------------SSS-
-S----------------SSSSSSSSS----------------------------------S------------------
---------------------------------------------------------------S-----------S-SSS
-SSSSSSSSSS-------------SSSSSS--------------------------------------------------
----S------------------S--S-----------------------------------------------------
--------------------------------------S---------------S--SSSS---S---------------
-------------------S-----------------------------------------S------------------
---------------------------------------S----------------------------------------
----------------------------------------------------------------------------S---
S-------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
-----SSSSS-S------------------------S-----SSSS----------------SSSSSSS---S-S-----
-------------------------------------------S----------S-------------------------
----------------------------S----------------------S---------------S------------
----------------S------------------------------------------------SSSS-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S-----------------------------------S---------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S-S--SS-S----------------------
--------------------------------------------------------------------------------
--------------------------S----S------------------------------------------------
-S------------SS----------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S----------------------------S--------S------------------S
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---SSSSSS-------------------------------------------------------S------S--------
------------------------------------S-------------------------------------------
---------------------------S------------------S----------------------------SS---
------------S-----S-S-------------------S---------------------------------------
-----------S--------------------------S-----------------------------------------
-------------------------------S-----------------S------------------------------
--------S-S---------------S--------------S-S-----------SSSSSSSS----S------------
------S--SS--S-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_340
--------------------------------------------------------------------------------
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TCCAAACCGCTCCTACAGTG------------------------------------------------------------
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>reverse_1255
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------------------------------------------------------CTTGGTCTCCGCCTCCTTAC------
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--------------------------------------------------------------------------------
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>forward_346
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------CCGCTCCTACAGTGAGTACG------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_1804
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------TATCAGGAGACGGTGACGCT-----------------
--------------------------------------------------------------------------------
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>forward_347
--------------------------------------------------------------------------------
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-------CGCTCCTACAGTGAGTACGG-----------------------------------------------------
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>reverse_1815
--------------------------------------------------------------------------------
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------------------------------------------------------GGTGACGCTCAAGATCAGGC------
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>forward_742
--------------------------------------------------------------------------------
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--GTCCCAGTCAGCAACCTTCT----------------------------------------------------------
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>reverse_2781
--------------------------------------------------------------------------------
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------------------------------------------------------------GTCGTTGTTGTCATGGCCG-
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----------
