>input_sequence_52728
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-------------------------------------------------------------------------ATGGTTC
GTCCCTTGGAAGTGCGGTTCGTTCCCTTGTCCGGCTTTGCACCTGGAGGGGATCCACCACAAGGTCCTAGAGCAAAGAAA
GTATCCAAGGCTGCACCTGTGTTTGAAGTCCCTGGGTTATGGACACCCGATGTACCTCTAGAGAATGCCTATCGTGACTG
TATTAACATGACTGTCGTATGTTACTTATTCCTGATCGTGATTCTTTTATATCTTTACTTTCTGTTTGATTACTGTCTTT
GAGATGTGTGCTTTGTACATCTTTGCTGCAGGTATACCTTGATTTGCACTTGCCAAGGAAAATGAAGCCTAAGCTTTCTC
TGAGAGAGACCTTGTAAGAAATCTCTTACCTGTTAAATGATTATGCAATTTTGAAGATATGCACCTGAGGATTGTAGTAG
TAGCTCTTCAAATATGGCTTGCAGTGGTTAGGTATACAAATTGTGGAATTTGTAGTACTGTTGTGTGTTGTCAAACATAA
CTGATTTCGATAATGCCAAAGCTAGTACCTGTAGTAATTTGGGACTAAATCAGCTGCTAGAGTAACATAGATAATATGTA
GGGCATTCTTAGTTTATATGACGTGATCTTAATTCAATTAGTTTCCCTGCCAATGAACTTGACCTAATTAGTGCTTTTCC
TTCATAGCTATATGATATATGGTGGCAATACAATCAAAGAACTTGCGGAGCTTGTATGCGGTCGTCTGAATCTTGAGGTG
GGGCATCCAATGAAGTTCACCATTGATGGGACTCTTCTGCCGGAAGGTGCTGTTCTTTTATTCACTGCCTTCTAATTATT
TTAGTGATGCTGTATTTTCTGTTTTATAGTTTGCTATGCACACTTTGTTTTTTTAGTCTGATGATGTGTGTTCATTTACA
TCTGTTTTGTAGATTGTGTACTCTCGTCAGTTTACAACAAGTATATTTGGGACGGGAGCATTCTGACACTCTGCTGCTGT
GTTGGTAAGTACTTCAGGATAGCCCTGTTGTTTCTGTATATGATTGTTGTTCTGACATTTTGTTCAAGGAAGTTGTCAGT
TTTGAGTTGTATCTTTTGTTTTTCTTAAACAGATAATGTGAAGAAAATCTTCAACGTGGACCTGTCAGTGAAAGTTCCTG
TGATACCACCAGGTGAAAATAAGTGTAGTTTGAGGTCAGTTGTCATGGTACTTGTGTTGGCTAGAACTGATCAGATGTTT
TATTCTCTTAATGACAGTGCATGTGATTGAAGATGAAGTCCCATTACCCACTCTGAGGATCTGCTCTGTCCGGGACGCAA
GGAGGGCGTCTATGATGAGCAAGGTTGGAACCTACTCGCTGAAGGATGGTGCTCCAGCTGTGCTGGTGCACGGCACCTAT
GGGGAGGGCGGGTCACTAGTTTTCTATTAG--------------------------------------------------
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>chr6A_1_TraesCS6A01G407700
CCGGCCTAGCCCGCCTGGCCGAACGAAAACCCTAGCTT--ACCTCCCGCTATATATTGGCTGCTTATCTCATTTCGCCCC
TCCCCTTTTCCCCTCCCCGAGCGCCGCCACCAGCCGGCAGCGCCCCCTTCGTCCCCTCCGTCGGCTTCCCCGGCGAGCTA
CCAAGGTAAGTCGATCCGTCCGTCGCGTACATCTCGTAGAACGATCGTCTCCCCTG-----CTAGACCTCGTAGATGATC
CATGGCGTAGATCTCGTCGACGATCGTCTCCCCTGCCT----AGACCTAGTAGATGATCCATGTCGTAGATCTCGTCGAC
GATCGTCTCTCCTGCCTAGACCTCGTAGACGATCCATGGCGTAGATCTCGTAGACGGTCACCTCCCCTGCATAGACCTCG
TAGGTGAACCATCGCGTGGATCTCGTCGAGGATTCATCCTCCATGCTGTCCCCTTGAACTGTATGCATCTCTGTGTGGTA
TGT--GTAGATCCGTCTCCTGTGCAGATTTTCGAGCTGGACAGAGTGGCTCTGTTTCGATTCGGGAGTAGGCCCTGGTGC
TATGTGGGTAGTAGGACCTATTTTCCCTCCATTCTGTTGTGATTCAGGAGCATGGTCTGTTGTTCATGCCTTCTGGTTT-
-----GGAGCATGGTCTGTTGTTCATGTGTTCTGGTTTGAGTCGTGATTAGGACCATTTTCAATGCACTCGGCTTTGTGT
CGGGATTAGATCCCTTTAAATTGCAACTGAGTTTTTTATG----------CTGTGTAAGTGATCTCATAGATGATTTATC
TACTGTGCTGCCCCAT----TGTTTGTCTGTTTAGATCTCTTAGAGTTATTGTGTAGATCTCGTATAAATCATCTGCTCT
GCAGATTTTCGAGCTGGACTAGTGGCCCTTGTCCTCTGTTTCAATTCTGTAGTATTTTGTAATCTCCCTTTTGTCTGTTG
CTGCTTGATTTCAGCAGTTTATTTAAGTTACTCAAATATTCTGTATGCTTTACTCTTCTTTTCAGAAGGAGGAATGGTTC
GTCCCTTGGAAGTGCGGTTCGTTCCCTTGTCCGGCTTTGCACCTGGAGGGGATCCACCACAAGGTCCTAGAGCAAAGAAA
GTATCCAAGGCTGCACCTGTGTTTGAAGTCCCTGGGTTATGGACACCCGATGTACCTCTAGAGAATGCCTATCGTGACTG
TATTAACATGACTGTCGTATGTTACTTATTCCTGATCGTGATTCTTTTATATCTTTACTTTCTGTTTGATTACTGTCTTT
GAGATGTGTGCTTTGTACATCTTTGCTGCAGGTATACCTTGATTTGCACTTGCCAAGGAAAATGAAGCCTAAGCTTTCTC
TGAGAGAGACCTTGTAAGAAATCTCTTACCTGTTAAATGATTATGCAATTTTGAAGATATGCACCTGAGGATTGTAGTAG
TAGCTCTTCAAATATGGCTTGCAGTGGTTAGGTATACAAATTGTGGAATTTGTAGTACTGTTGTGTGTTGTCAAACATAA
CTGATTTCGATAATGCCAAAGCTAGTACCTGTAGTAATTTGGGACTAAATCAGCTGCTAGAGTAACATAGATAATATGTA
GGGCATTCTTAGTTTATATGACGTGATCTTAATTCAATTAGTTTCCCTGCCAATGAACTTGACCTAATTAGTGCTTTTCC
TTCATAGCTATATGATATATGGTGGCAATACAATCAAAGAACTTGCGGAGCTTGTATGCGGTCGTCTGAATCTTGAGGTG
GGGCATCCAATGAAGTTCACCATTGATGGGACTCTTCTGCCGGAAGGTGCTGTTCTTTTATTCACTGCCTTCTAATTATT
TTAGTGATGCTGTATTTTCTGTTTTATAGTTTGCTATGCACACTTTGTTTTTTTAGTCTGATGATGTGTGTTCATTTACA
TCTGTTTTGTAGATTGTGTACTCTCGTCAGTTTACAACAAGTATATTTGGGACGGGAGCATTCTGACACTCTGCTGCTGT
GTTGGTAAGTACTTCAGGATAGCCCTGTTGTTTCTGTATATGATTGTTGTTCTGACATTTTGTTCAAGGAAGTTGTCAGT
TTTGAGTTGTATCTTTTGTTTTTCTTAAACAGATAATGTGAAGAAAATCTTCAACGTGGACCTGTCAGTGAAAGTTCCTG
TGATACCACCAGGTGAAAATAAGTGTAGTTTGAGGTCAGTTGTCATGGTACTTGTGTTGGCTAGAACTGATCAGATGTTT
TATTCTCTTAATGACAGTGCATGTGATTGAAGATGAAGTCCCATTACCCACTCTGAGGATCTGCTCTGTCCGGGACGCAA
GGAGGGCGTCTATGATGAGCAAGGTTGGAACCTACTCGCTGAAGGATGGTGCTCCAGCTGTGCTGGTGCACGGCACCTAT
GGGGAGGGCGGGTCACTAGTTTTCTATTAGGTTCTGTCGCTGGCACAATAGTCCCATGTCACTTTTGCCGCAAGTCATGA
CTTGGAGTTGCTTCTGTTAAGCCCATCTCGTAGTCCTTTTGTGAATGAGGCACCTGTTTACATCCTGTGATCCTTTTGTG
TCATGAGGCACTGTTTACATTTTGTGGTCATTTTGCGACATGGGCAGTCATTTTGCATCCTCTAGTCCTTTAGATGTTAA
TTGAGGCACTGATTACATCCGTCTGCTTTGCTATCTGGCTGTGAATAACTTTCTGCCGTCTTGATCCACTGATTTATTTC
CTTGGTTATCTTGTGATACTTTTTTGAATGGGAGCATGTCCAAGACAGAAATTCTGTTTTCTGAAGGTTTGGCTGCCATT
CTCTTATCTCTCTTATTTTGCACCGATGATTGCAAGTAATTATGCTTTGTCTGGAAACACGTGGAATTGGTGTCTTTGCT
TGCTCATGTCTAGGACATCCAATTAGGATGATTTATAACCTCATGTTCCAGCCTCGTGGTGCAACATTGCAACATCATAT
TTCTACATATATGTTCTTTGCAGCGCAGCTTGCAAACTCAGAATTGGAGCTGTGAATTAATCAAGACCATACTCATTCTC
TCTGGGCTTGCCTCCTTTATGCGAGCTTCAATTCTTGTTTGGTTGTCTGGTGTGATTGTGGGTTAGGGCTGTTGAGAGTT
GTTGTTGGTTTTGGCTTTCCGAGGAGGGGCAAATTTAAGGCTGGATCACACCTGCCATGTTATTTTGAAAATTAGTTTGG
CTGTCCAGGTCTTTTTAGCGCAGTATGGATGTAGATGCACATCCATAGGCGCATGCACTCGTCCTAATGAGCACCTCGGA
TAGATTGAGCGGCACATCATCTTGAGATTGATAAAGTCGTCACATATGCCTTTCTAGTCGATGAGAACATCTTCCTTCAT
TTTTCATTGAAAACACATCGCCGGAAGGTCTGAAATAAAAACAGAAAAATGCAAGCACCGGTGCTAAGTC
>chr6D_1
CCGGCCTAGCCCGCCTGGCCGAACGAAAACCCTAGCTTTTACCTCCCGCTATATATTGGCTGCTCATCTCATTTCGCCCC
-------------TCCCCGAGCGCCGCCCCCAGCCGCCAGCGCCCCCTTCGTCCTCTCCGTCGGCTTCCCCGGCGAGCTA
CCAAGGTTAGTCGATCCGTCCGTCGCGTACATCTCGTAGAACGATCGTCTCCCCTGCCTGCCTAGACCTCGTAGATGATC
CATGGCGTAGATCTCGTCGACGATCGTCTCCCCTGCCTGCCTAGACCTCGTAGATGATCCATGGCGTACATCTCGTCGAC
GAACATCTCCCCTACCTAGACCTCGTAGATGATCCATGGCGTAGATCTCGTAGACGATCACCTCCCCTGCATAGACCTCG
TAGGTGAACCATCGCGTGGATCTCGTACAGGATCCATCCTCCATGCTGTCCCCTTGAACTGTATCCATCTCTGTGTAGTA
TATCGGTAGATTCGTCTCCTGTGCAGATTTTCGAGCTGGACAGAGTGGCTCTGTTTCGATTCGGGAGTAGGCCCTGGTGC
TATGTGGGTAGTAGGACCTATTTTCCCTCCATTCCGTTTTGATTCAGGAGCATGGTCTGTTGTTCATGCCTTCTGGTTTT
AGTCGGGAGCATGGTCTGTTGTTCATGTGTTCTGGTTTGAGTCGTGATTAGGACCATTTTCAATGCACTCGGCTTTGTGT
CGGGATTGGATCCCTTTAAATTGCAACTGATTATTTGTGTGCATGACATTCTGTGTAAGTGCTCTCATAGATGATTGGTC
TACTGTGCTGCCCCATTTTCTGTTTGTCTGTTTACATCTCTTAGAGTTATGTGTAGAT----------------------
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>chr5A_122
--------------------------------------------------------------------------------
-------------------------------------------CCCCTTCTTCCCCTCCGTCGGCTTCCCCGGCGAGCTA
CCAAGGTAAGTCGATCCGTCCGTCACGTACATCTCGTGCAATGATCGTCTCC----CCTGCCTAGACCTCGTAGATGATC
CATGGCATAGATCTCGTCGACGATTGTCTCCCCTGCCT----AGACCTCGTAGATGATACATGGCATAGATCTCGTCAAC
GAACATCTCCCCTACCTAGACCTCGTAGATGATCCATGGCGTAGATCTCATAGACGGTCACCTCCCCTGCATAGACCTCG
TAGGTGAACCATCGCGTGGATCTCGTAGAGGATCCATCCTCCATGCTGTCCCCTTGAACTGTATGCATCTCTGTGTTGTA
TGGGA--AGATTCGTCTCCTGTGCAGATTTTCGAGCTGGACAAAGTAGCTCTGTTTCGATTCGGGAGTAGGCCATGGTGC
TATGTGGGTAGCAGGACCTATTTTCCCTCCATTCTATTTTGATTCAGCAGCATGGTCTGTTGTTCATGCCTTCTGCTTT-
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>chr7A_122
CCCCTTTG------------------------------------------------------------------------
----------------------------------------------------CCCCTCCGTCGGCTTCT-CGGTGAGCTA
CCAAGGTAAGTCGATCCGTCCGCCACGTACATCTCGTAGAACAATCGTCTCC----CCTGCCTAGACCTCGTAGATGATC
CATGGCATAGATGTCGTCGACGATCGTATCCCCTGCCT----AGACCTTGTAGATGATACATGGCATAGATCTCGTCGAC
GAACATCTCTCTTGCCTAGAACTCATAGATGATCCATGGTGTAGATCTCGTAGACGGTCACCTCCCCTGCATAGAACTCG
TAGGTGAACCATCGCGTGGATATCATAGAGGATCCATCCTGCATGCTGTCCCCTTAAACTGTATGCATCTCTTTGTGGTA
TA--GGTAGATTCGTCTCCTGTGCAGATTTTCGAGCTGGATAGAGTGGCTCTGTTTCAATTCGGGAGTAGGCCCTGGTGC
TATGTGGGTAGTAGGACATATTTTCCCTCCATTCTGTTTTGATTCAGCAGCATGGTCTGTTGTTCATGCCTTCTGGTTT-
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>SNPs
----------------------------------------------------------------S---------------
SSSSSSSSSSSSS---------------S-------S-------------------------------------------
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------------------------------------------------S--------------S----------------
--S-S------------------------S--------------------------------------------------
--------------------------S------S----------------------------------------------
-----------S--------------------------------------------------------------------
--------------------------------------S-----------------------------------------
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-------S----------------------S-S---SSSS---------------------S--------------SS--
----------------------------------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_922
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----------------------TGGCCCTTGTCCTCTGTTTC--------------------------------------
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>reverse_2454
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-----------------------------------------------------CCATGTCACTTTTGCCGCAA-------
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