>input_sequence_52654
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------------------------------------------------CCTCTCTCTTCTCCACCTTGCTTTATTTCCAT
CTCCCGAGATCAATCATACACACACTGCGCTCACCGTCCATGGACGAAAGCCCCCACCGCCGCACCGGCGTTGGCACCGG
AGTCCGGCTGAAGCAGAAACTCGCACAGCTCCTTGTGCGTTCTTCTTGCATCAGCAACGCCACCAAGACCACAACCACCC
CGGCCACGGCCTTCGTTAGCCTCGATAAGGCCAACACCAACCCCCACCAAGAGCCACTACATTCCCCTGACTTATGCACC
CACTGCACCTATCAGAGGCCCAACCTTGTGGAAGGCAGCCGCTCAAGCCGCCACCGTCACCGCAGCGCGTCGGTCGTCCA
CGCCTCCGTCGACTACCCAGGTGGGGTCTCCGGTCGCCGTCCTGTTCACTCCATTGTTCCTCTCCTGCCGCCATCGGTGC
AGACAAACGATGCAAAGAAGAGCAGGGGTGCACGCTCTAGGTCGGTGTCAAGGCGGCATCGCTCATACTCCTCTTGTCGG
CGTCTGCGGCGGCCGCGGATGAACTCCGTGCCGTACAGCTGCTCTCCGTCCACGGCGACCGACGACGAAAGCGGCGAGGA
TGCTGAGACGACGACGCTCTTCTCGTCCCTCAGCTTCTCCTCCGACTCGACCTGCGAGTTTTACCACACCAACAGTAGCA
ATGCCTCCAGGAAGAGCCACAGGAACGGGCTTCGCAGAGCGCCCCGGCGCGCGTTGCCAAGTGCCAGGGACCCACCCGAT
GCCTTCCAGCCGCGGGTTAACTTGGCGACGAAGCACAACTACTGCAAGAACAGCAAAAGGGAGGAGGATGCGAATGCGAT
CAAGAAGATGGTCGTGGAAGAAATCGGAGCCATTGGCGTGGGCATGGCGGTGGTGAAGCGATCGAGCAACCCATACGCAG
ACTTCCGGAGCTCGATGGTGGAGATGGTCGTGGAGCGCCGTATCGCCAACGTGGGGAAGATGGAGGAGCTCCTGGAGTCG
TACCTCTCGCTCAACTCGCCCGAGCACCACCCGGCAATCATCGCCGCCTTCGAGGACGTCTGGGAGGCCGTCTTCGGCGA
GGCGTGAGAGAGAGAACCAAGCTAAAGGTGTTCGTTGTAGTAGCTTGCTAGTTCAGGTCTTCAGGATCGATCGTAGGCGC
GGTGTTGTTTGTGGTTTTCAGTTCGTCTTAGCTATACTTTGCAGATGT---------------ATGTACATGCCCATTGC
AGAATTCTCATGCAGAATTGGTGTCATCGCTCGTGCCATCGAAATGTTGCGTGCTCATGTTAATTACTAGCTTGTCTCTA
GTTGAGCACTTTGAGCCTTGGAGTTCTATGATGAATATTTTGAACTAATTTTTGTGTCGG--ACAGCGTTGTATGTTTGA
TGCTCGGATATGAATGTGTCCAAA--------------------------------------------------------
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>chr3B_1_TraesCS3B01G255700
CAACCTCTCCGGTTTATATAGACACCGGAGAGGGCTAGGGTTTACATGGAGTCAGTTATAAGAAAGGAAATATAACATCC
GGATCACCAAGCTTGCCTTCCACGCCAAGGAGAGTTCCATCCGGACACGGGACGGAGTCTTGAGTCTTGTGTCTTCACGC
TTCAATAGTCCGAACAATGTATATAGTCCGGCTGTCCGGATACCCCCTAATCCAGGAGTCCCTCATCGGCGAGAGAAGAG
GAGATCCAGAGAGAAGGGGACGAAGGGGGCGAATGGGAGCATGAAAGGGCAAGCCGCTGCCCTCCCCCACCCCATAGCCG
CACGAGCCAACCACCGTCCACCACGCACACGGCCTGGACACGAAAAGACCAAAATACCCTCGATGGGGGCACAGTATTGC
CCGCAGTGGCACGGGATATTTACCCACCGGTGCGCGTGCCGGGGACGCACATGCCACACTCACAGCCACAGTCACTGACA
AATGGGGCCCACACGCGAGCGACCCCACACGTCAGCGGGATCCGGTCGAAGCCACGGAGTGAACGATGCCGGGGAAAAAG
GATAACTATTCATTGCTACAGGAGAGGGCTTCGATCCGACGATTCAGGTTGTCCAACGGCTTGATCTAACGTCTAAAAAC
GCATCAAGCAGTTCTATCCGACGGCCGAAAGTCGCTAAGCTCTGAGAGCGCCCGTGGCCCCCTTCGTTTCTTGTTTCTGG
ATACCTGAAAAAAGAAATTAGTCACACGACTAGAATGGAGACCGTGACAAACTTGCTTACGTTTACATCCGTCGGCGGCC
AACCAAATGTTGAGCTCGTGCCCACAGTCCCGTACACCTTCCACATGGCCGATGTCGCCAGATTCTGCCCACTTGCTTCC
TCAGGTTCTTAACCCCTCTTTTTTTTGACGGGGATTCTTAACCCCTCTCACTTGAAACTCCACACCCAAAGCCACGGG--
------TGAGACTATAAACCAAAAACCAGTGTCCGGAAACCAGACACTCCTCTCTCTTCTCCACCTTGCTTTATTTCCAT
CTCCCGAGATCAATCATACACACACTGCGCTCACCGTCCATGGACGAAAGCCCCCACCGCCGCACCGGCGTTGGCACCGG
AGTCCGGCTGAAGCAGAAACTCGCACAGCTCCTTGTGCGTTCTTCTTGCATCAGCAACGCCACCAAGACCACAACCACCC
CGGCCACGGCCTTCGTTAGCCTCGATAAGGCCAACACCAACCCCCACCAAGAGCCACTACATTCCCCTGACTTATGCACC
CACTGCACCTATCAGAGGCCCAACCTTGTGGAAGGCAGCCGCTCAAGCCGCCACCGTCACCGCAGCGCGTCGGTCGTCCA
CGCCTCCGTCGACTACCCAGGTGGGGTCTCCGGTCGCCGTCCTGTTCACTCCATTGTTCCTCTCCTGCCGCCATCGGTGC
AGACAAACGATGCAAAGAAGAGCAGGGGTGCACGCTCTAGGTCGGTGTCAAGGCGGCATCGCTCATACTCCTCTTGTCGG
CGTCTGCGGCGGCCGCGGATGAACTCCGTGCCGTACAGCTGCTCTCCGTCCACGGCGACCGACGACGAAAGCGGCGAGGA
TGCTGAGACGACGACGCTCTTCTCGTCCCTCAGCTTCTCCTCCGACTCGACCTGCGAGTTTTACCACACCAACAGTAGCA
ATGCCTCCAGGAAGAGCCACAGGAACGGGCTTCGCAGAGCGCCCCGGCGCGCGTTGCCAAGTGCCAGGGACCCACCCGAT
GCCTTCCAGCCGCGGGTTAACTTGGCGACGAAGCACAACTACTGCAAGAACAGCAAAAGGGAGGAGGATGCGAATGCGAT
CAAGAAGATGGTCGTGGAAGAAATCGGAGCCATTGGCGTGGGCATGGCGGTGGTGAAGCGATCGAGCAACCCATACGCAG
ACTTCCGGAGCTCGATGGTGGAGATGGTCGTGGAGCGCCGTATCGCCAACGTGGGGAAGATGGAGGAGCTCCTGGAGTCG
TACCTCTCGCTCAACTCGCCCGAGCACCACCCGGCAATCATCGCCGCCTTCGAGGACGTCTGGGAGGCCGTCTTCGGCGA
GGCGTGAGAGAGAGAACCAAGCTAAAGGTGTTCGTTGTAGTAGCTTGCTAGTTCAGGTCTTCAGGATCGATCGTAGGCGC
GGTGTTGTTTGTGGTTTTCAGTTCGTCTTAGCTATACTTTGCAGATGT---------------ATGTACATGCCCATTGC
AGAATTCTCATGCAGAATTGGTGTCATCGCTCGTGCCATCGAAATGTTGCGTGCTCATGTTAATTACTAGCTTGTCTCTA
GTTGAGCACTTTGAGCCTTGGAGTTCTATGATGAATATTTTGAACTAATTTTTGTGTCGG--ACAGCGTTGTATGTTTGA
TGCTCGGATATGAATGTGTCCAAAGACATGCGTGCCATCGCTCCTCGTTGGCTGACGTTTTTCCTGTCAACTATGACATC
GCCACGTTCTATGTGTTTCAAATCAACTTGCTGTACGAACAAAAGAAAAAACAGCTAGC------TGCTGACAACTACTA
GATGGCCGGATAGTGAAACAGGATCAACAAGTACCAACAAGTGCGTTAGCTGAGTAGTAGTATGAGCATCTGCAATCGGG
CGCCTCAAATCCGCCTCATATGCCCAGACGGGCCGCCAGTTCACTGTCGGCTCGTGAAATTTTGACCGAGGCGGGTGCCT
CAGACGACCGGGCTGACCGGCATCCCTCATATCCAACCCAAATATGAGGCGGATATGGGGCGCCCGTGCGCGCNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCCAGATCCATTTGCTATCTCCTCTCTTCTTCCTCCTCCGCATCATCCGTCTCGC
AGCTCCGCCGTTGCGCGCACTCTGCAGTCGTTCCTAGCCTCTATGTCGCCAACTACAGCAGAGCAGTCCTCTCTCCCGTC
CTCCCCGCGGGGGACATCGTCGCCGGCCTGGACTCCAGCGCAGTACGCCTGCATGGCAATAAATAGAGCCACTTTGCAAC
AATGCATGAAGCGGCTAGGAAGGATGTGGAGAGGGCATTTGATGTACTTCAAGCTCATTGAGGAATTGTG
>chr3D_721
ATT-----------------------------------------------------------------------------
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---CCTAAAAAAGGAAATTAGTCACACGACTAGAATGGAGACCGTGACAAACTTGCTTACGTTTACATCCGTCGGCGGCC
AACCAAATGTTGAGCCCGTGCCCACAGTCCCGTACACCTTACACATGGCTAATGTCGCCAGATTCTGCCCACTTGCTTCC
TCAGGTTCTTA-----------------------------ACCCCTCTCACTTGAAGCCTCACACTCAAAGCCACGGCTG
AGAGCCTGAGACTATAAACCAAAAACCAGTGTCCGGAGACCAGACACCCCTCTCTCTTCTCCTCCTTGCTTTATTTCTAT
CTCCCGAGATCAATCATACACACACTGCGCACACCGTTCATGGACGAAACCCCCCACCGCCGCACCGGCGTTGGCGCCGG
AGTCCGCCTGAAGCAGAAACTCGCACAGCTCCTTGTGCGTTCTTCTTGCATCACCAACGCCACCAAGACCACAACCACCC
CGGCCACGGCCTTCGTTAGCCTCGATAAGGCCAACGCCAACCCCAACCAAGAGCCACGACATTCCCCTGACTTGTGCACC
CACTGCACCTATCAGAGGCCTAACCCTGTGGAAGG---------AAGCCGCCACCGTCACCGCAGCGCGTCGGTCGTCCA
CGCCTCCGTCGACTACCTAGGTGGGGTCTCCGGTCGCCGTCCTGTTCACTCCATTGCTCCTCTCCTGCCGCCATCGGTGC
AGACGAACGATGCAATGAAGAGCAGGGGTGCACGCTCTAGGTCGGTGTCAAGGCGGCATCGCTCATACTCCTCTTGTCGG
CGTCTGCGGCGGCCGCGGATGAACTCCGTGCCGTACAGCTGCTCTTCGTCCACGGCGACCGACGACGAAAGCGCCGAGGA
TGCTGAGACGACGACGCTCTTCTCGTCCCTCAGCTTCTCCTCCGACTCGACCTGCGAGTTTTACCACGCCAACAGTAGCA
ATGCCTCCAGGAAGAGCCACAGGAACGCGCCCCGCGGAGCGCCCCGGCGCGCGTTGCCAAGTGCCAGGGACCCACCCGAT
GCCTTGCCGCCGCGGGTTAACTTGGCGACGAAGCACCACCACTGCAAGAACAGCAAAAGGGAGGAGGATGCGAATGCGAT
CAAGAAGATGGTCGTGGAAGAAACCGGAGCCATTGGCGTGGGCATGGCGGTGGTGAAGCGATCGAGCAACCCATACGCAG
ACTTCCGGAGCTCGATGGTGGAGATGGTCGTGGAGCGCCGTATCGCCAGCCTGGGGAAGATGGAGGAGCTCCTGGAGTCG
TACCTCTCGCTCAACTCGCCGGAGCACCACCCGGCAATCATCGCCGCCTTCGAGGACGTCTGGGAGGCCGTCTTCGGTGA
GGCGTGACAGAGAGTACCAAGCTAAAGGTGTTCGTTGTAGTAGCTTGCTAGTTCAGGTCTTCAGGATCGATCGGACGCGC
GGTGTTGTTTGTGGTTTTCAGTTCGTCTTAGCTATACTTTGCAGATGTATGTACAAAAAGAAAATGTACATGCCCAGTGC
AGAATTCTCATGCAGAATTGGTGTCATCGCTCGTGCCATCGAAATGTTGCGTGCTCAAATTAATTACTAGCTTGTCTCTA
GTTGAGCACTTTGAGCCTTGGAGTTCTATGATGAATATTTTGAGTTAATTTTTGTGTCAG--ACAGCGTTGTAGGTTTGA
TGCTCGGATATGCGTGTGTCCAAAGACATGCGTGCCATCGCTCCTCGTTGGCTGACGTTTTTCCTGTCAACTATGACATC
GCCACGTTCTATGTGTTTCAAATCAACTTGCTGTACGAACAAAAGAAAAAACAGGTAGC------TGCTGACAACTACTA
GATGTCCGGCTATTGAAACAGGATCAACAAGTACCAACAAGTGCGTTAGCTGAGTAGTAG---GAGCATCTCCAGCCGGG
CGTCTTAAACCCGCCTCATACATCTGGACGGGCCACCTGATCACTGTCGGCTCGCGAAATATCGATCCAGACAGACGCCT
CATACGAACGAGCTGACCAGCATCCCTCATATCCAACCCAAATATGGGGCGGATATGGGGCACCCGAGCG----------
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>chr3A_721
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ATACCTAAAAAAAGAAATTAGTCATACGACTAGAATGGAGAACGTGACAAACTTGCTTACGTTTACATCCGTCGGCGGCC
AACCAAATGTTGAGCCCGTGCCCACAGTCCCGTACACCTTACACATGGCTAATGTCGCCAGATTCTGCCCACTTGCTTCC
TCAGGTTCTTA-----------------------------ACCCCTCTCACTTGAAGCCTCACACTCAAAGCCACGGCTG
AGAGCCTGAGACTATAAACCAAAAACCAGTGTCCG-AAACCAGACACCCCTCTCTCTTCTCCTCCTTGCTTTATTTCTGT
CTCCCGAGATCAACCATACACACACTGCGCACACCATTCATGGACGAAAGCCCCCAGTGCCGCACCGGCGTTGGCGCCGG
AGTCCGCCTGAAGCAGAAACTCGCACAGCTCCTCGTGCGTTCTTCTTGCATCACCAACGCCACCAAGACCACAACCACCC
CGGCCACGGCCTTCGTTAGCCTCGATAAGGCCGACACCAACCCCCACCAAGAGCCACGACATTCCCCTGACTTGTGCACC
CACTGCACCTATCAGAGGCCCAACCTTGTGGAAGG---------CAGCCGCCACCGTCATCGCAGCGCGTCGGTCGTCCA
CGCCTCCGTCGACTACCCAGGTAGGGTCTCCGGTCGCCGTCCTGTTCACTCCATTGTTCCTCTCCTGCCGCCATCGGTGC
AGACGAACGATGCAAAGAAGAGCACGGGTGCACGCTCTAGGTCGGTGTCAAGGCGGCATCGCTCAAACTCCTCTTGTCGG
CGTCTGCGGCGGCCGCGGATGAACTCCGTGCCTTACAGCTGCTCTTCGTCCACCGCGACCGACGACGAAAGCGGCGAGGA
TGCTGAGACGACGACGCTCTTCTCGTCCCTCAGCTTCTCCTCCGACTCGACCTCCGAGTTTTACCACACCAACAGTGCCA
ATGCCTCCAGGAAGAGCCACCGGAACGCGCCCCGCAGAGCGCCCCGGCGCGCGTTGCCAAGTGCCAGGGACCCACCCGAT
GCCTTGCAACCGCGGGTTAACTTGGCGACGAAGCACCGCCAGTGCAAGAACAGCAAAAGAGAGGAGGATGCGAATGCGAT
CAAGAAGATGCTCGTGGAAGAAACCGGGGCCATTGGCGTGGGCATGGCGGTGGTGAAGCGATCGAGCAATCCATACGCAG
ACTTCCGGAGCTCGATGGTGGAGATGGTCGTGGAGCGTCGTATCGCCAGCGTGGGGAAGATGGAGGAGCTCCTGGAGTCG
TACCTCTCGCTCAACTCGCCGGAGCACCACCCGGCAATCATCGCCGCCTTCGAGGACGTCTGGGAGGCCGTCTTCGGCGA
GGCGTGAGAGAGAGAACCAAGCTAAAGGTGTTCGTTGTAGTAGCTTGCTAGTTCAGGTCTTCAGGATCGATCGTACGCGC
GGTGTAG-TTGTGGTTTTCAGTTCGTCCTAGCT-TAGTTTGCAGATGT---------------ATGTACATGCCCGATGC
AGAATTCTCATGCAGAATTGGTGGCATCGCTCGTGCC-----------------------------------TGTCTCTA
GTTGAGCAATTTGAGTCTTGGAGTTCTATGATGAATATTTTGAGTTAGTTTTTGTGTCAGACACAGCGTTGTATGTTTGA
TGCTCGGATATGAATGGGTCCAAAGACATGCGTGCCATCGCTCCTCGTTGGCTGACGTTTTTCCTGTCAACTATGACATC
ACCACGTTCTATGTGTTTCAAATCAACTTGCTGTACGAACAAAAGAAAAAACAGCACCTGCTGAGTGCTGACAACTACTA
GATGTCCGGCTATTGAAACAGGACCAACAAGTACCAACAAGTGCGCTAGCTGAGCAGTA---------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
------S-------------------------------------------------------------------------
---------------S------------------------S--------SS-----------------------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-SS-----S-----------S--
-----------------------------------------------S--------------S--------------S--
------------------------------S------S-------------------------------------S----
------S----------------------------------------------S--------------------------
---------------------------------------------------------S---------------S------
-----------------------------------SSSSSSSSS------------------------------------
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----S---------------------------------------------------------------------------
---------------------------------------------S----------------------------------
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---------------------------S--SS------------------------------------------------
-----S------------------------------S--S----------------------------------------
-----------------------S--------------------------------------------------------
------------------------------------------------S-------------------------------
--------------------S-----------------------------------------------------------
---------------------------------------------------------------------------S----
----------------------------------------------------------------------------S---
---------------------------------------------------------SS---------------------
-------------------------------------------SS-------------S---------------------
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----S----S--S-----------------------------------------------SSS--------S--SS----
--S--S---S----------SSS-SS--------S--S-S--------------S-----S-S--S-S--S-S-SS----
--S----S--S-------S---------------------------S--------------S----S---SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_117
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-----------------TTCCACGCCAAGGAGAGTTC-------------------------------------------
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>reverse_1127
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------GCTGAAGCAGAAACTCGCAC------------------------------------------------------
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>forward_120
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--------------------CACGCCAAGGAGAGTTCCAT----------------------------------------
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>reverse_1969
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------------------------------------------------ACGTGGGGAAGATGGAGGAG------------
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>forward_841
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---------------------CCACAGTCCCGTACACCTTC---------------------------------------
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>reverse_2695
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------------------------------------------------------TGAAATTTTGACCGAGGCGG------
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----------------------------------------------------------------------
