>input_sequence_52652
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------ATGAGCACCGGCAAGGCGCCCACGCTCT
ACCATATGCGCGCTCGGTCGCTTACGAGCAAGCTGCTCGACCTCGACTCCTCGCCGGCGTGCCCGTCCCCGCCACCGTTC
CGGTCACACGTCACG------GTGCCGTTTCTCTGGGAGGACGCGCCGGGGAAACCCAAGCTGCGTGCAGCCCGGCCAAG
CGCTCTGTTGCTCCCTTCCGCTGCAACCGCGACCGCGAGCCCAGTCGTTCTTGCTGACGGCGGCCCGACT---GCCAGAG
TCGCCGGCGGTCACGAGGACGGTCACGGTGCCCATGCGCGCCCCGTGCTGCTGAAGCTGAAGCTGCCGCCGCGGCTGCAA
GCGGCGGAGCACCCGCTCTCCTCCCCCAAGACCGTGCTCCAGGGCCCCTACTCCGGCGGA---------GGAAACAAGCC
GCCGAGGCCGGTTAGGAGGATCGCGAGGACGGCGAGCTGTCAGATGAGTCTGCGCGGCGGCGGGGGCCTGTTTGTTTGGA
GGAAGGGCGCGGCAACGGCAACGGCATCAGCGGGCAGCAAGGAGGGCGGCCACTGTCAGTTCTACGCTGTGGCGCCGGAC
GGGTCATGCCTCTCGCCGGCGGCGTCGTCGGCGTCCTCGTCGTCGTCTTCGTCCATGTCCTACTTCTTTGATGACAACAG
CCGCAGGCAAGCCGATGGGCGCGAGGACTCGGAGGATGGCGAGGTAGGTGACGACGGCCGCAAGGGGTCGGTGAGGATCA
CCAGGTTTCGGAGGAACCGAAGCCTTCCCACTATGTCCAGATCGCATCTCTGGGTGAGTT---CTC-TTCTCTATTCTCT
CTGCTCTGTTTCTTCCTAGGACAGAGTTTGCACTCCTCTACTGTAGCTATTACTTTTGGTT-------------------
-----------------------ATATGAAAAAGATAAGAAGTAAAAAACGAAAGTCCTATTCTGACCCCGAGCTCAAAT
GCATGTTTTAAGCAAACTATTTTTGTGCATGTTACCATTTCCTAAACAACAGAACACACACACACACACACACACACACA
CACACACACACACCAACAATCTAATCTGGTAGAAAAGTTTCTGAAGTTCATTCTGTATGCGGTCTCCATGACATGGGCAC
ATTATCAATTTTGAAAATTTGGATCTTACTCCCAAATCGAGTCTCGAGCGAACATCCGCCCATCCCCCCTACTGCTGTTT
TAGTCA--CTCTCGAGCTATCTGCTGCACTGAAAATTCACAATTTTCTCAAGAATCTAGAAGAATAGAAGTGCACAAAAG
GCTGAAATTAAACTAAATTTGGTGCACACCTGTTCTTATCAGTTATTTCACATCACATACGCATGCAAATAAAATAATGC
AAAA----------------------------------------ATGTTTCTGCTGGCAGGCCAACATCCGCAAGGGCGT
CAAGCAGATTAGTCCATGGAGCTACAAGCCTACATAG-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr3A_1_TraesCS3A01G513300
TCACTCACTGCACTCACATGTGTGTATGAATGGGCCAAGAGAATTTCAGAATTTTAGTTGGGCTTTGGGCCAAAGGCCTA
CTAGCAAAATTCCAACAGTTTATCAGCTGGCAAGCCCGGCATACGGACGTGCGGGTATTGAACGAGTGTGGTAGATATCC
ACTCCATCCCATCAAGTAAACGTCTCTCTGGCAATAAACATGCGCGGATACCGAGGATGCTGTT----------------
-------------------------CTAGTGAGAGGCCATGCCCGCTCTAGGCCGGCGTCAATGCAGAGCGGCCGCTACA
CAGCGGCATGAATGCGGGCAGCTGACGTCGGGCGAAAAAGCATGCGGGGAAGGCGGATGGTCTTGGATGGGACA------
--------GGGGCGTGGCAGCGTCCTGGACACTCGCAAAGTCCCTCACTTCGTTCCCAGTTTGCGAAAAAAAGTAAGTCC
GGACCGCTCAGCTGTGCGACACAGTATCGTGTTGGATGACAAGAAACGTCCGAACTGTGTGGACGGTTTGAGAGTCGATG
TTGAAGATGCCCTAAATTCATGGTGCTTTGCCGAGTAGTT-----TTTTTTGCCCTTTGCCAAGTATTTTGAATAGCCCT
TTGAATACTCGGCATAC---TTTTCTGGCTGGGATACTAGTAGTC-TGTTTGTCCGTTGCATCCTTGCATGGACCGGTGA
GGAGCCGGGGTAACGCTGCATTTGGCGTAGACGATGGGTCA-------TGCGCGTCTCCATCCATCAGCCGGCCGCACTG
----TCCCCCTCGCTGAAAACTTCAAGGCGCGCCATTTCATCGGTTTCTCCATCCACGCCCGTTCCACGCTTGTCCATTT
CATTTCACGGGTCATGCGATGCGTATGCCGCGCGACTTCGCTCCATTTATCGGCGTCACGCCTCCACACGCGCCGGCCCC
CGCTCCCCGTTTACCCTTCGCCTAGCTACCACTACTTCACTCGTCGTGTGTGACCACCCCTTACATTCTACACCACTCCA
C-----------------GACGATCGTCTTGCGAGCGGGAGAGGCTACGACGATGAGCACCGGCAAGGCGCCCACGCTCT
ACCATATGCGCGCTCGGTCGCTTACGAGCAAGCTGCTCGACCTCGACTCCTCGCCGGCGTGCCCGTCCCCGCCACCGTTC
CGGTCACACGTCACG------GTGCCGTTTCTCTGGGAGGACGCGCCGGGGAAACCCAAGCTGCGTGCAGCCCGGCCAAG
CGCTCTGTTGCTCCCTTCCGCTGCAACCGCGACCGCGAGCCCAGTCGTTCTTGCTGACGGCGGCCCGACT---GCCAGAG
TCGCCGGCGGTCACGAGGACGGTCACGGTGCCCATGCGCGCCCCGTGCTGCTGAAGCTGAAGCTGCCGCCGCGGCTGCAA
GCGGCGGAGCACCCGCTCTCCTCCCCCAAGACCGTGCTCCAGGGCCCCTACTCCGGCGGA---------GGAAACAAGCC
GCCGAGGCCGGTTAGGAGGATCGCGAGGACGGCGAGCTGTCAGATGAGTCTGCGCGGCGGCGGGGGCCTGTTTGTTTGGA
GGAAGGGCGCGGCAACGGCAACGGCATCAGCGGGCAGCAAGGAGGGCGGCCACTGTCAGTTCTACGCTGTGGCGCCGGAC
GGGTCATGCCTCTCGCCGGCGGCGTCGTCGGCGTCCTCGTCGTCGTCTTCGTCCATGTCCTACTTCTTTGATGACAACAG
CCGCAGGCAAGCCGATGGGCGCGAGGACTCGGAGGATGGCGAGGTAGGTGACGACGGCCGCAAGGGGTCGGTGAGGATCA
CCAGGTTTCGGAGGAACCGAAGCCTTCCCACTATGTCCAGATCGCATCTCTGGGTGAGTT---CTC-TTCTCTATTCTCT
CTGCTCTGTTTCTTCCTAGGACAGAGTTTGCACTCCTCTACTGTAGCTATTACTTTTGGTT-------------------
-----------------------ATATGAAAAAGATAAGAAGTAAAAAACGAAAGTCCTATTCTGACCCCGAGCTCAAAT
GCATGTTTTAAGCAAACTATTTTTGTGCATGTTACCATTTCCTAAACAACAGAACACACACACACACACACACACACACA
CACACACACACACCAACAATCTAATCTGGTAGAAAAGTTTCTGAAGTTCATTCTGTATGCGGTCTCCATGACATGGGCAC
ATTATCAATTTTGAAAATTTGGATCTTACTCCCAAATCGAGTCTCGAGCGAACATCCGCCCATCCCCCCTACTGCTGTTT
TAGTCA--CTCTCGAGCTATCTGCTGCACTGAAAATTCACAATTTTCTCAAGAATCTAGAAGAATAGAAGTGCACAAAAG
GCTGAAATTAAACTAAATTTGGTGCACACCTGTTCTTATCAGTTATTTCACATCACATACGCATGCAAATAAAATAATGC
AAAA----------------------------------------ATGTTTCTGCTGGCAGGCCAACATCCGCAAGGGCGT
CAAGCAGATTAGTCCATGGAGCTACAAGCCTACATAGAGGGAGTATCACTGTATGGCTGACAGATAAAGTATCGCTAAAA
ATGCAGCTGCTTTATGCGCCGCAACATGTTGCCAATTTAATGCAACAAAGGTAGCAACCATGTATGCGCTTTATATGT--
-ATAATGA---TGTACCTAATGCAAATTTAACGCAATAAAGGTAGCAATGTTGTATGTGCGGTTGCAGTTAACGATATCA
GAGCAAGGCTAATAGTGTACGGAT---CTAGGATTTTTATCATTACTTGTATTTGGCGTTAAATGGACTTTTATCGCAAA
TAAAGGGATAC----------------GTCAATTTATGGTCACGCCAAAGATATGTCAAGCTTTGCTTTCATATATAGGC
AGAGGCTTTGCTGCCATCCCTTTATTATGCTGGAATATTTTGCTTCTACGTTTGGCTAAATGTTAAGCTTTGCTTTCTTA
TGGCTGGATGCCAAGTATATGTGATGTTGAGGGAATAGCTAAACTTTTGTATTGGATCCCTCCTGAGTCCTACATGGCAG
TCGCTGGATGGTCAACAAAGGGCAAACGAAGTCAAC-------------------ACAAGTCCAAGCAAGCTACCGCGGG
TCCAGGCAAACCACCCCGGTGAACAAAAGTCCAAACAAGTAAAAATAGGAAGAGAAAATAAAAGACCAAGTCAAAATAGG
AAGAGTG-------------------------------AATAAAAGACCATGTCAAAATGGGAAGAGAGTATAAAAGAAC
AAGTGAAAGCTGAAGGCAAAGAAGCAAAGAAGACCAAGCTCAAGAAGAAAACATTGATATGATGAAAAAATTACCCCCAT
GGCCAGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGGAGCTACGGTTTCAACATAGGGGCC
>chr3D_118
--------------------------------------------------------------------------------
-------------------------------------GGCATACGGACGGACGGGCATTGAACGGGCATGGTAGATATCC
GCACCATCCCATCAAGTAAACGTCTCTCTGGCATTGAACATGCGCAGACACCGGGGACGCTGCACGGGCGGTGCCCTCGA
TTGGCGCGCCGCTTCAATGCTGGTGCTAGTGAGAGGTCACGTCCTCTCTAGGCCGGCGTCAATGCAGAGCGTCCGCTACA
CAGCGGCATGAATGCGGGCAGCTGGCGTCGGGCGGGAAAGCACGCGGGGGAGGAGGATGGTTTTGGATGGGACAGGTTAG
TCAGACACGGGGCGTGGCACCGTTCTGGACACCCGCAAAGCCCCTCACTTCGTTCCCAGTTTGCGAAAAAAAGTATGTCC
AGACCGCTCAGCTGTCCGACACATAATAGTGTTGGATGACAAGGAATGTCCGAACTGTGCGGACGATTTGAGAGTCACCG
TTGAAGATGCCGTAAGTTCATCGTGCTTTGCCGAGTAGTTTTTTCTTTTTTGCCCTTTGCCAAGTATTTT----------
-TGAATACTCGTAGTCTGTTTTTTCTGGCTGGGATACTAGTAGTC-TGTTTGTCCGTTGCA--------TGGACCGGTGA
GGAGCCGGGGTAACGCTGCATTTGGCGTAGACGATGGGTCATGCCTCATGCGCGTCTCCATCCATCAGCCGGCCACACTG
----TCTCCCTCGCTGAAAACTTCAAGGCGCGCCATTTCATCGGTTTCTCCA-----------TCCACGCTTGTCCATTT
CATTTCACGGGTCATGCGATGCGTATGCCGTGCGACTTCGCTCCATTTATCAGCGTCACGCCTCCACACGCGCCGGCCTC
CGCTCCCCGT---------------------CTACTTCACTCGTCGTGTGTGAGCAGCCCCTGCATTCTGCAGCACTCGC
CTATCCTGTTATACGACGGACGACCGTCTTGCGAGCGGGAGAGGCTACGACGATGAGCACCGGCAAGGCGCCCGCGCTCT
ACCACGTCCGCGCTCGGTCGCTTACGAGCAAGGTGCTCGACCTCGACTCCTCGCCGGCGTGCCCGTCCCCGCCACCGTTC
CGGTCACACGTCACG------GTGCCGTTTCTCTGGGAGGACGCGCCGGGGAAACCCAAGCTGCGCGCAGCCCGGCCGAG
CGCCCTGTCGCTCCCTTCCGCGAGCCCAGCCCCA------------GTTCTTGCTGACGGCGGCCCGACT---GCCAGAG
TGGCCGGCGGTCACGAGGACGGTCACGGCGCCCATGCGCGCCCCGTGCTGCTGAAGCTGAAGCTGCCGCCGCGGCTGCAA
GCGGCGGAGCACCCGCTCTCCTCCCCCAGGACCGTGCTCCAGGGCCCCTACTTCGGCGGCGGCGGCGGCGGAAACAAGCC
GCCGAGGCCGCTTAGGAGGATCGCGAGGACGGCGAGCTGTCAGATGAATCTGCGCGCCGGCGGGGCCCTCTTTGCTTGGA
GGAAGGGCGCGGCAACGGCAACGGCATCAGCTGGCAGCAAGGAGGGCGGCCACTGTCAGCTCTACGCCGTGGCGCCGGAC
GCGTCGTGCTGCTCGCCCGCGGCGTCGTCAGCGTCCTCGTCGTCGTCTTCGTCCATGTCCTACTTCTTTGATGACAACAG
CCGCAGGCAAGCCGATGGGCGCGAGGACTCGGAGGATGGCGAGGTTGGTGACGACGGCGCCAAGGGGTCGGTGAGGATCA
CCAGGTTTAGGAGGAACCGAAGCCTTCCCACTATGTCCAGATCGCATCTCTGGGTGAGTTAATCTC-TTCTCCATTCTCT
CTGCTGTGTTTCTTCCTAGGACAGAGTTTGCACTCCTCTACTGTAGCT----CTTTTGGTTATACTTCCCCTG-------
TTACTTGTCGTAGAAATGGATAGATATGAGAGAGACAACAAGTAAAACA-------------------------------
----GTTTTAACCAAACTATTA---TGCATGCTACCAATTCCTAAACAACAGAACACACTCCTTCAAAAACTAAACA---
-AAACACACATTATCACAACCTAATCTGATAGAAAAGTTTCTGAAGTTCATCCTGTACGCGGTCTCCATGGCATGGGCAC
ATTATCAATTTTGAAAATTTGGATCTCACTCCCAAATCGAGTCTCGAGTGAACATCTGCCCATCCCCTGT--TGGTGTTT
TAGTCGGTCTCTCGAGTTATCTGCTGCACTGAAAATACACAAATTTCTCAAGAATCTAGAAGAATAGAAGTCCACAGCAG
GCTGAAATTAAACAAAATTTGGTGCACACCCGTTCTTATCAGTTGTTTCACATCGCATACGCATGCAAATACAATAATGC
AAAAC---------------------------------------ATGTTTCTTCTGGCAGGCCAACATCCGCAAGGGCGT
CAAGCAGATTAGTCCATGGAGCTACAAGCCGACATAGAGGGAGTATCACCGTACGGCTGACAGATAAAGTATCGCTAAAA
ATGCAGCTGCTTTATGCACCGCAACATGTTGCCAATTTAATGCAACAAAGGTAGCAACCATGTATGCGCTTTATATGACG
GATAATGA---TGTACCTAATGCAAATTTAACGCAATAAAGGTAGCAACGTTTTATGTGTGGTTGCGGTTAATGATATTA
GAGCAAGGCTAATAGTATATCTATGTACTAGGATTTTTATCGCTACTTGTGCTTTGCGTTAAATGTATTTTTATCGCAAG
TAGAGGGATATAGCATCAAATTTAGGCGCCAATTTAGGGTCACGCCAAAGATATGTCAAGCTTTCCTTTCATATGGGT--
AGACGCTTTGCTGCCATGCCTTTATTATGCTGGGATGTTTTGCTTCTACATTTGGTTAAATGTCAAGCATTGCTTTCTTA
TGGCTGGATGCCACGTATATGTGTTGTTGAGGGAATAGCTAAAC--TTGTATTGGGTCCCTCCCGAGTCCTACATGGCAT
CCACTGGATGGTCAACAAAGGGCAAAAGAAGTCAACAAAAGTCAAAGTGGTCAAGACAAGTCCAAGCAAGCTACCGCGGG
TCCAGGCAAATCGCCCCAGTCAACAAAAGTCCAAACAAGTAAAAATAGGAAGAGAAAATAAAAGACCAAGTCAAAATAGG
AAGAGTAAATAAAAGATCATGTCAAAATAGGAAGAGTAAATAAAAGACCATGTCAAAATAAGAAGA---GATAAAAGAAC
AAGTGAAAGCTGAAGGCAAAGAAG--------ACCAAACCCAAGAAGAAAACATTGATATGATGGAAAAATTACCCCCAT
GGGCCA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>chr3B_608
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------GGGATTCAAGTAGTTTTGTTTGTCCGTTGTATCCTTGCATGGACCGGTGA
GGAGCCGGGACAGCGCTGCATTTGGCGTAGACGACGGGCCATGT-------GCGTCTCCATCCATCAGCCGGCCGCACTG
TCTCTCTCCCTCGCTGAAAACTTCAAGGCGCGCCATTTCATCGGTTTCTCCA-----------TCCGCGCTTGTCCATTT
CATTTCACGGGTCATGCGATGCGTATGCCGTGCGACTTCGCTCCATTTATCGGCGTCACGCCTCCACACGCGCCGGCCTC
CGCTCCCCGT---------------------CTACTTCACTCGTCGTGTGTGAGCAGCCCTTGCATTCGCCTATT-----
---TCCTGTTACACGACGGACGACCGTCTTGCGAGCGGGAGAGGCTACGACGATGAGCACCGGGAAGGCGCCCGCGCTCT
ACCACGTCCGCGCCCGATCGCTTACGAGCAAGCTGCTCGACCTCGACTCCTCGCCGGCGTGCCCCTCCCCGCCGCCGTTC
CGGTCCCGCTCCCACGCCTCCGTGCCGTTTCTCTGGGAGGACGCGCCGGGGAAACCCAAGCTGCGTGCACCCCGGCCGAC
CGCTCTCTTGCTCCCTTCCGCGAGCCCAGCCCCG------------GTTCTTGCTGACGGCGGCGCGACTGCCGCCAGAG
TGGCCGGCGGTCACGAGGACGGTGCCCCTGCCCATGCGCGCCCCGTGCTGCTCAAGCTGAAGCTGCCGCCGCGGCTGCAA
GCGGCGGAGCACCCGCTCTCCTCCCCCAAGACCGTGCTCCAGGGCCCCTACTTCGGCGGCGGCGG------AAACAAGCC
GCCGAGGCCGCTTAGGAGGATCGCGAGGACGGCGAGCTGCCAGATGAATCTGCGCGCCGGCGGGGGTCTCTTTGTTTGGA
GGAAGGGCGCGGCAACGGCAACGGCATCAGCGGGCAGCAAGGAGGGCGGCCACTGTCAGCTCTACGCCGTGGCGCCGGAC
GCGTCGTGCTGTTCGCCGGCGGCGTCGTCGGCGTCCTCGTCGTCGTCGTCGTCGATGTCCTACTTCTTTGATGACCACAG
CCGCAGGCAGGCCGACGGGCGCGAGGACTCGGAGGATGGCGAGGCAGGCGCCGACGGCGGCAAGGGGTCGGTGAGGATCA
CCAGGTTCAGGAGGAACCGAAGCCTTCCCACTATGTCCAGATCGCATCTCTGGGTGAGTT---CTCCTTTTCTCTTCTCT
CTGCTCTGTTTCTTCCTAGGACAGAGTTTGCACTCCTCTACTGTAGAT----CTTTCGGTTGTACTCCTTCCGTCCCGAA
TTACTCGTCGTAGAAATGGATAGATATGAGAGGGACAACAAGTAAAATG-------------------------------
----GTTTTAAGCAAACTACTTTTACGCATGATACC--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------AACATCTGCCCATCCCCTGT--TGGTGTTT
TAGTCGGTCTCTCGAGCTATCTGCTGCACTGAAAATACACAAATTTCTCAAGAATCTAGAAGAATAGAAGTCCACACATG
GCTGAAGTTAAAGTAAATTTGGTGCACACCCGTTCTTATCAGTTGTTTCACATCACATACGCATGCAAATACAATAATGC
AAAAAAATGTTTCTGCTGGCATGCAAATACAATAATGCAAAAAAATGTTTCTGCTGGCAGGCCAACATCCGCAAGGGCGT
CAAGCAGATTAGTCCATGGAGCTACAAGCCTACATAGAGGGAGTATCACCGTACGCCTGACAGATAAAGTGTGGCTAAAA
GTGCAGCTGCTTTATGCGCCGCAATATGTTGCCAATTTAATGCAACAAAGGTAGCAACCATGTATGCGCTTTATATGG--
-ATAATGACGATGTACCTGTTGCAAATTTAACGCAATAAAGGTAGCAATGTTTTATGTGCGGTTGCAGTTAATGATATCA
GAGCAAGGCTAATAGTGTATTGAT---GTAGGATTTTTATCGTTACTTGTATTCGGCGTTAAATGGATTTTTATCGCAAA
TAGAGGGATACAA-------------CGTCAATTTAAGGTCATGCCAAAGATACGTCAAGCTTTGCTTTCATATGGGT--
AGAGGCTTTGCTGCCATCCCTTTATTATGATGGAATGTTTTGCTTCTATGGTTGGCTAAATGTCAAGCTTTGCTTTCTTA
TGGCTGGATGCCAAGTATATGTGATGTTGAGGGAATAGCTAAAGTTTTGTATTGGATCCCTCCCGAGTCCTACAAGGCAT
CCATTGGATGGTCAACAAAAGGCAAAAGAAGTG-------------GTGGTCAATGCAAGTCCAAGCAAGCTACCGCGGG
TCCAGGAAAACCA-CCCGGTCAACAAAAGTCCAAACAAGTAAAAACCGAAAGAGAGAATAAAAGACCAAGTCAAAATAGG
AAGAGCG-------------------------------AATAAAAGACCATCGCAAAACGGGAAGA---TATAAAAGAAC
AAGTGAAAGCTGAAGGCAAAGAAGCAAAGAAGACCAAGCCCAAGAAGAAAACATTGATATGATGGAAAAATTACCCCCAT
GGGCCA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------SS----S--------S-SS------------
S-S------------------------------S-S---------S--S----S---S----SS----------------
------------------------------------S--S-S--S--------------------------S--------
------------------------S---------SS------S------S---S-------S------------------
-------------------S---S--------S-------S----------------------------------S----
S--------------S-------SS--S---------------S--S------------S-----S----------SSS-
-----------S---S-----S------------------------------------------------SSSSSSSSSS
S----------SSS-SS---------------------------------------------------------------
--------------------------------------------------------------------------------
------S---------------------------------------------SSSSSSSSSSS-----------------
------------------------------S-----------------------------------------------S-
----------SSSSSSSSSSSSSSSSSSSSS----------------------S--S-----S------S--S-----SS
-----------------------S-------------------------------------------------S------
----SS-S------------------------------------------------------------------------
-----------------------------------------------------------------------------S--
---------------------SSSSS-S--SS-SSSSSSSSSSSSS----------------------------------
-S------------------------------------------------------------------------------
----------------------------------------------------S------S--------------------
----------S------------------------------------S--------S------------S----------
-----------------------------------------------------------S-------S------------
-S---S---SS---------------------------------------------------------------------
----------------------------------------------------------S---------------------
--------S-----------------------------------------------------------------------
------------------------------------------------SSSS----------------------------
-----------------------------S-S---S--S--------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS--------------------S------S-----S---------------------S-SSS--S-S--SS-SSSSSS
S-S-------SSSSS----S--------S----------------------S-----S------------S---------
--------------------------S---------------------S-------S----------SS-SS--S-----
-----S------------------------------S-----S----------------------------S----S---
------------------------------S-------------S--------------------------S--------
--------------------------------------------------------------------------------
-------------------------------------------------S---S--------------------------
-----------------------------------------------------------------------------S--
----------------------------------------------------S-------------------S-------
-------------------SS--------------------S-------------------------S------------
--S---------------------------------S-------------------------------------SSSSSS
------------------------------------S--------------------------S----------------
---------------------------------------------------------------S---------------S
S-S-----------------------S-----------------------------------------------------
--------------------S-----------------------------------------------------------
------------------------------------------------------------------SSS-----------
---------------------------------------S------------------------S---------------
--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_209
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------GGCAATAAACATGCGCGGAT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>reverse_2155
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CACACA
CACACACACACACC------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>forward_557
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TGTGGACGGTTTGAGAGTCG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>reverse_2156
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ACACA
CACACACACACACCA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>forward_1668
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------GCCACTGTCAGTTCTACGCT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>reverse_3653
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------ACGGTTTCAACATAGGGGCC
