>input_sequence_52612
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-ATGGCGACGGAGGCGGCGCCGGAGTGGCTGGACAAGGGCGACAACGCGTGGCAGCTGGCGGCGGCGGCGCTGGTGGGGC
TGCAGAGCGTGCCGGGCCTGGTCATCCTCTACGGCAGCATCGTCAAGAAGAAGTGGGCCGTCAACTCCGCCCTCATGGCG
CTCTACGCCTTCGCCGCCACCATGGTCTGCTGGTGCCTCTGGGGCTTCCGCATGTCCTTCGGCGACCGCCTCCTCCCCTT
CGTCGGCCGCCCCGACTTCGCCGGCCTCGACGCCGCAGGCTTCCTCTCCCGCCAGGGCTTCGCCGGCGCCTACCCGGCCG
CCACGCTCCTCTTCTTCCAGTTCGTCTTCGCCGCCATCACGCTCATCCTCGTCGCCGGCTCGCTCCTGGGCCGCATGGAC
TTCCGGGCATGGATGATCTTCGTGCCCCTCTGGCTCACCTTCTCCTACACCGTCGGCGCCTTCAGCGTGTGGAGCCCCAA
CGGGTTCCTCTTCAAGGCCGGCGTCATGGACTTCGCCGGCGGCTACGTCATCCACCTCTCCTCCGGCATCGCCGGCTTCA
CCGCCGCCTTCTGGGTCGGCCCGAGGACGGCCAAGGACAGGGAGACGTTTCCGCCCAACAACATCATCCTCACGCTCGCC
GGCGCGGGGCTGCTGTGGATGGGGTGGACGGGGTTCAACGGCGGCGCGCCGTACGCCGCCAACATCGACGCGTCCGTCGC
CGTCGTCAACACACACCTCTGCACGGCCACGAGCCTCCTGGTGTGGCTCATCCTCGACTGCTTCGTCTTCGGCCGCCCCT
CGGCCTTCGGCGCCGTCCAGGGCATGATCACCGGCCTCGTCTGCATCACCCCGGCCGCCGGGCTGGTGCAGGGCTGGGCG
GCGATGCTGATGGGGCTCGTCTCCGGGAGCGTGCCGTGGTTCACCATGATGGTGCTGCACAAGCGGTGCCGGCTCCTGAG
GCACGTGGACGACACGCTCGCCATCCTCCACACGCACGGCGTGGCCGGCAGCCTCGGCGGCCTCATGACGGGCCTCCTGG
CGGAGCCGCGGCTATGCCGGCTCTTCTTCGGCGACGACCCGCGGTACGTGGGATTCGTGTACGCGGTCAGGGGTGGGCGC
GTCTCCGCGGGGTTTCGGCAGATGGGCGTGCAGCTGGCCGGGATCGCGTTCATCGTGGCCCTAAACGTCGTCGTCACGAG
CATCATTTGCCTGCTCGTCAGGGTGGCCGTGCCGCTCCGGCTCAGCGAGGAGCAGCTGGCGGCCGGCGACGACGCCATAC
ACGGGGAGGACGCGTACGCGGTGTGGGGCGAGGGCGAGACGTACGAGCAGTCCGTGCATGGGAGCCGGCGATACCAAATG
ACGGCCAATCCTATGTCGTCCAAGGTTGATGAGATCATCTGA--------------------------------------
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>chr5A_1_TraesCS5A01G388100
GTGTTATTGCAATAGGCAAATGGGCAGTTTAGTTATGCTATGTGTAATGTTAATGTGATACCTAATTCAAATTATATGAT
GAACTAGTGTAAACGTGTGTTTCGAATGAGTTTGTGTACAAAATTTATGTTTAATTTTTCTGAGAGATTAAGTTTTAGGT
GATTTGCTAGATGAAGAAATGTTTAAACCCCTAAAAATTGGCAAGGGACTGAGATAATAGATACGGTTTGAACTTTCAGG
ATAGGGGATATGCTGCTAAAGATTATTCTTGTTTTG------TGTTGATCCGTGCATCAGTACGTACAAGCACACGGTAC
AACGAGTTCGCTTTATACTACTCCATATGCTATATATATAATTTACTATTGTATGTAGCATATGTGCTTATATATGTTGG
GTACAAATGGCGCTTGCAACATTAGTGTTTGACTAAATCCGCCTGACAGTAACCGATTAGCCGGCC--------------
-CATGATTCCAAAACTGGAGATCGACCAAACAATTGAAGGACCGGGAATGCTCCAACATTCATAAGGAAGTCCGACATTT
GATCTCCATATT---CGA-CCTTCAGTTTTGTACTCTTATTTTTTACT--------AGAAATCATAGAAGTTGAGAATGA
TCCATTAGATCCTTTGCGCCATTCAGTTTGCTGCATGCAGAAGTGGCCGCTCTGAACACACGGCTCAGACGCTAATTACG
GTAGGC--CGGCCGGCTTGTCATTGCAAAATTCAGAGGTAGAATGCAACAAACTCCCCAG-AAAAGAGCAGAAGATTCAG
CCACAGAACACACATGCACAACTGAATCTCGTCCTTCAGAAAGTGCCTCAGGAATCTGCGCGGCTTCTGCCCCCTCGGAC
CTCTTCCACCCCGCCCCTCCTATATAGCCCTCGCCCCCTCCACTTGGCACCGCGTACTCGCCTCGCGAACGCGACGCCGT
ATCTTGTCACGCGCGCGCACACACTCGCATCGTGGACTGCCTGCCATCGATCGCCGCCCGGCGAGGTAGGAG-----CAT
CATGGCGACGGAGGCGGCGCCGGAGTGGCTGGACAAGGGCGACAACGCGTGGCAGCTGGCGGCGGCGGCGCTGGTGGGGC
TGCAGAGCGTGCCGGGCCTGGTCATCCTCTACGGCAGCATCGTCAAGAAGAAGTGGGCCGTCAACTCCGCCCTCATGGCG
CTCTACGCCTTCGCCGCCACCATGGTCTGCTGGTGCCTCTGGGGCTTCCGCATGTCCTTCGGCGACCGCCTCCTCCCCTT
CGTCGGCCGCCCCGACTTCGCCGGCCTCGACGCCGCAGGCTTCCTCTCCCGCCAGGGCTTCGCCGGCGCCTACCCGGCCG
CCACGCTCCTCTTCTTCCAGTTCGTCTTCGCCGCCATCACGCTCATCCTCGTCGCCGGCTCGCTCCTGGGCCGCATGGAC
TTCCGGGCATGGATGATCTTCGTGCCCCTCTGGCTCACCTTCTCCTACACCGTCGGCGCCTTCAGCGTGTGGAGCCCCAA
CGGGTTCCTCTTCAAGGCCGGCGTCATGGACTTCGCCGGCGGCTACGTCATCCACCTCTCCTCCGGCATCGCCGGCTTCA
CCGCCGCCTTCTGGGTCGGCCCGAGGACGGCCAAGGACAGGGAGACGTTTCCGCCCAACAACATCATCCTCACGCTCGCC
GGCGCGGGGCTGCTGTGGATGGGGTGGACGGGGTTCAACGGCGGCGCGCCGTACGCCGCCAACATCGACGCGTCCGTCGC
CGTCGTCAACACACACCTCTGCACGGCCACGAGCCTCCTGGTGTGGCTCATCCTCGACTGCTTCGTCTTCGGCCGCCCCT
CGGCCTTCGGCGCCGTCCAGGGCATGATCACCGGCCTCGTCTGCATCACCCCGGCCGCCGGGCTGGTGCAGGGCTGGGCG
GCGATGCTGATGGGGCTCGTCTCCGGGAGCGTGCCGTGGTTCACCATGATGGTGCTGCACAAGCGGTGCCGGCTCCTGAG
GCACGTGGACGACACGCTCGCCATCCTCCACACGCACGGCGTGGCCGGCAGCCTCGGCGGCCTCATGACGGGCCTCCTGG
CGGAGCCGCGGCTATGCCGGCTCTTCTTCGGCGACGACCCGCGGTACGTGGGATTCGTGTACGCGGTCAGGGGTGGGCGC
GTCTCCGCGGGGTTTCGGCAGATGGGCGTGCAGCTGGCCGGGATCGCGTTCATCGTGGCCCTAAACGTCGTCGTCACGAG
CATCATTTGCCTGCTCGTCAGGGTGGCCGTGCCGCTCCGGCTCAGCGAGGAGCAGCTGGCGGCCGGCGACGACGCCATAC
ACGGGGAGGACGCGTACGCGGTGTGGGGCGAGGGCGAGACGTACGAGCAGTCCGTGCATGGGAGCCGGCGATACCAAATG
ACGGCCAATCCTATGTCGTCCAAGGTTGATGAGATCATCTGAGCAGTCCTATGCATTTGTAAGATCGATACTAGTGCATT
GTGGAGTATGTTTAACGGATTTG------CTGTTTAGGGGTACTCCTAGATCCTAGTCTACCACGAACGAATGTCCAAGG
AAATATTAGGAACGGCCA-CCTATACGGTCAAACCCACAACACTGTAGTTTTCGATCGTTGAAGCAGCCCGAAGGGGCTG
AACCCTAGGATCAACATATAGCTAGCGATCCTAGCTTATCTCCACACTTAATTGCATATAAGTATCACATTTGTGCCTAG
GATAACGAATTGGTAAGAAATATAAGGTGTTTAGATCACTACTTTAGAAGGGGTATCAATTTTCTTTACGGAGGGAGGGA
GTACTAGTTTTCGTTTTTTGTTTGTTTGCAGATTAGTATCGAATTTGGGGCAGACCGCAACAAATCACATTGATTAGCGT
TTGAACAAGTTTTGACAATCTATACCTAAGATGCAATCTTAATCAACAATGCATTATCCGGCTTACTTTCATATCGGTAC
TGATCCGGATTGGTACTGATCCGGATTGTGGATGAATATCTCAACGAAATCAGGATTAGAGACGAAATTAAAGACGGGTT
GCCCGTTTCTTTGTACGTATTAAATCTACATGCAAGCCATGTTTAAATAGAAGACATGTGAAATCTTGAACTTGAGCTTT
TGTATGCAAAGACCGTCTTTGTTTGGGCCGTAGCTACAAATACTCAAATTATAGACATTTCTTTTGTAAATTAAGAGCGT
GTGGTATTCTTTTCTCCCGTTGCAACGCACGGGCCCTTTTGCTAGTGAAACTAATGAGCGGGGCCGACATGACGCGTCGC
GTGCATGTTCTTTTGTAGAAAACCCACTTACTTTACATTTGACTCGTGGCGCATTGTGGGGAGTGCACCCCCGCGTACAC
TCGAATCTCACGACAACTC-TTTTTGCAAATGAGGTGCATGATTAAATAAAAAGTAAGGGGATTTTCTACAAAAGAACAT
GCACATGATG
>chr5B_234
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-------------------------------------------------------------------------TTTCAGG
ATAGGGGATCTGGTGCTAAAGATTATATTCTTGTTCTATATATGTTGATCCGTGCATCAGTACGTACAAGCGCACGGTAC
AACGAG----------------------------TACATAATTTACTTTTGTAGGTAGCCTATGTGCTGT----TGTTGG
GTCCAAATGGCGCTTACAATAACGGTG-TTGACTAAATCCACCTGACTCTAACAGATTAGCCGGCTCT------------
---TGATTCCAAAACTGGAGATCGATCAGACAATTGAAGGATCGGGAATGCTCCAACATTCATAAGGAAGTCCGCCATTT
GATCTGCATATAGGACGA-CCTTCAGATTTGCACACTTCTTTTTTAC---------AGAAATCATAGAAGTTGAGAATGT
TTCATTAGATCCTTTGCGCCATTCAGTTTGCTGCATGCAGACATCGCCGCTCTGAACACACGGCTCAGACGCTAATTACG
GTAGGC--CGGCCGGCCTGTCACTGCAAAGTGCAGAGGTAGAGAGCAACAAACCCACAGAAAAAAGAGCAGAAGATTCAG
CCACAGAACACACATGCACAACTGAATCTCGTCCTTGAGAAAGTACCTCAGGAATCTGCGCGGCTTCTCCCCCCTCGGAC
CTCTTCCACCCCGCCCCTCCTATATAGCCCTCGCCCCCTCCACTTGGCACCGCGTACTCGCCTCGCGAACGCGACGCCGG
ATCTTGTCACCCGCT----CACACTCGCATCGTGGACTGCCG----TCGATCTCCGGCCGGCGA-GTAGGAG-----GAT
CATGGCGACGGAGGCAGCGCCGGAGTGGCTGGAGAAGGGCGACAACGCGTGGCAGCTGGCGGCGGCGGCGCTGGTGGGGC
TGCAGAGCGTGCCGGGCCTGGTCATCCTCTACGGCAGCATCGTCAAGAAGAAGTGGGCCGTCAACTCCGCCCTCATGGCG
CTCTACGCCTTCGCCGCCACCATGCTCTGCTGGTGCCTCTGGGGCTTCCGCATGTCCTTCGGCGACCGCCTCCTCCCCTT
CGTCGGCCGCCCCGACTTCGCCGGCCTCGACGCCGCCGGCTTCCTCTCCGCCCAGGGCTTCGCTGGCGCCTACCCCGCCG
CCACGCTCCTGTTCTTCCAGTTCGTCTTCGCCGCCATCACGCTCATCCTCGTCGCCGGCTCGCTCCTCGGCCGCATGGAC
TTCCGGGCCTGGATGATCTTCGTGCCCCTCTGGCTCACCTTCTCCTACACCGTCGGCGCCTTCAGCGTCTGGAGCCCCAA
CGGGTTCCTCTTCAAGGCCGGCGTCATGGACTTCGCCGGCGGCTACGTCATCCACCTCTCCTCCGGCATCGCCGGCTTCA
CCGCCGCCTTCTGGGTCGGCCCCAGGACGGCCAAGGACAGGGAGGCCTTCCCGCCCAACAACATCCTCCTCACGCTCGCC
GGCGCCGGGCTGCTGTGGATGGGGTGGACGGGGTTCAACGGCGGCGCGCCGTACGCCGCCAACATCGACGCGTCCGTCGC
CGTCGTCAACACGCACCTCTGCACGGCCACGAGCCTCCTGGTGTGGCTCATCCTCGACTGCTTCGTCTTCGGCCGCCCCT
CCGCCATCGGCGCCGTCCAGGGCATGATCACCGGCCTCGTGTGCATCACCCCGGGCGCGGGGCTGGTGCAGGGCTGGGCG
GCGATGCTGATGGGGCTCGTCTCCGGGAGCGTGCCGTGGTTCACCATGATGGTGCTGCACAAGCGGTACCGGATCCTGAG
GCACGTCGACGACACGCTCGCCATCCTCCACACGCACGCCGTGGCCGGCAGCATCGGCGGCCTCATGACGGGCCTCCTGG
CGGAGCCGCGGCTATGCCGGCTCTTCTTCGGCGACGACCCGCGGTACGTGGGCTTCGTGTACGCGGTCAGGGGCGGGCGC
GTCTCCGCGGGGCTTCGGCAGATGGGCGTGCAGCTGGCCGGGATCGCATTCATCGTGGCGCTAAACGTCGTCGTCACGAG
CATCGTGTGCCTGCTCGTCAGGGTGGCCGTGCCGCTCCGGCTCAGCGAGGAGCAGCTGGCGGCCGGCGACGACGCCATAC
ACGGCGAGGACGCGTACGCGGTGTGGGGCGACGGCGAGACGTACGAGCAGTCCGTGCACGGGAGCCGGCGATACCAAATG
ACGGCCAATCCTATGTCGTCCAAGGTTGATGAGATCATCTGAGCAGTCCTATGCATT-GTAAGATCGATACTAGTGCATT
GTGGAGTATATTTAACGGATTTGCTACTCCTATTTAGGAGTA------GATCCTAGTCCA----CAACGAATGTCCAAGG
AAG--TTAGGAACAGCCT-CTCTACTGGTCAAACCCACAAGA-TGTAGTTTTCGATGGATGAAGCAGTCCAAAGGGGCTG
AGCCCTTGGATCAACATATAGCTAGCGATCCTCATCTTCCGAG----TTAAATGCATATAAGTATCACATCTATGGCTAG
GGTAACAAATTAGTA-----------------------------------------------------------------
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>chr5D_387
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------------------------------------------------------------------------TATGTTGG
ATACAAATGGCGCTTGCAACAATGGTGTTTGACTAAATCCACCTCACTGTAACCGATTAGCCGGCTGATCCATGATGCAC
GCATGATTCCAAAACTGGAGACCGATCAGACAATTGAAGGACCGGGAATGCTCTGATGCTCATAAGAAAGTCCGCCATTT
GATTTAATTGGAGCTTGTGCCTTCTGATTTGTACTCCTTTTGTTTATAACACAAGAAGAAATCATATAACTTCG------
----TTAGATTCTTTGCGCCGTTCAGTTTGCTGCATGCAGAAATCGCCGCTCTGAACACACGGCTCAGACGCTAATTACG
CTAGGCCGCGGCCGGCTTGTCACTGCAAAGTGCAGACGTAGAAAGGAACTAACTCCCCAG-AAAACAGCAGAAGATTCAG
CCACAGAACACACATGCACAACTGAATCTCGTCCTTCAGAAAGTACCTCAGGAATCTGCGCGGCTTCTCCCCCCTCGGAC
CTCTTCCACCCCGCCCCTCCTATATAGCCCTCGCCCCCTCCACTTGGCACCGCGTACTCGCCTCGCGAACGCGACGCCGG
ATCTTGTCGCGCGCGCGCACACACTCGCATCGTCGACTGCGTGCCATCGATCGCCGGCCGGCGA-GTAGGTAGATTAGAT
CATGGCGACGGAGGCGGCGCCGGAGTGGCTGGAGAAGGGCGACAACGCGTGGCAGCTGGCGGCGGCGGCGCTGGTGGGGC
TGCAGAGCGTGCCGGGCCTGGTCATCCTCTACGGCAGCATCGTCAAGAAGAAGTGGGCCGTCAACTCCGCCCTCATGGCG
CTCTACGCCTTCGCCGCCACCATGCTCTGCTGGTGCCTCTGGGGCTTCCGCATGTCCTTCGGCGACCGCCTCCTCCCCTT
CGTCGGCCGCCCCGACTTCGCTGGCCTCGACGCCGCCGGCTTCCTTTCCGCCCAGGGCTTCGCCGGCGCCTACCCGGCCG
CCACGCTCCTCTTCTTCCAGTTCGTCTTCGCCGCCATCACGCTCATCCTCGTCGCCGGCTCGCTCCTGGGACGGATGAAC
TTCCGGGCATGGATGATCTTCGTGCCCCTCTGGCTCACCTTCTCCTACACCGTCGGCGCCTTCAGCATCTGGAGCCCCAA
CGGGTTCCTCTTCAAGGCCGGCGTCATGGACTTCGCCGGCGGCTACGTCATCCACCTCTCCTCCGGCATCGCCGGCTTCA
CCGCCGCCTTCTGGGTCGGCCCGAGGACGGCCAAGGACAGGGAGGCCTTCCCGCCCAACAACATCCTCCTGACTCTCGCC
GGCGCGGGGCTGCTGTGGATGGGGTGGACGGGGTTCAACGGCGGCGCGCCCTACGCCGCCAACATCGACGCGTCCGTCGC
CGTCGTCAACACGCACCTCTGCACGGCCACGAGCCTCCTGGTGTGGCTCATCCTCGACTGCTTCGTCTTCGGCCGCCCCT
CGGCCTTCGGCGCCGTCCAGGGCATGATCACCGGCCTCGTCTGCATCACCCCGGCCGCCGGGCTGGTGCAGGGCTGGGCG
GCGATGCTGATGGGGCTCGTCTCCGGGAGCGTGCCGTGGTTCACCATGATGGTGCTGCACAAGCGGTGCCGGGTCCTGAG
GCACGTGGACGACACGCTCGCCATCCTCCACACGCACGGGGTGGCCGGCAGCCTCGGCGGCCTCATGACGGGCCTCCTGG
CCGAGCCGCGGCTCTGCCGGCTCTTCTTCGGCGACGACCCGCGGTACGTGGGCTTCGTGTACGCGGTCAGGGGCGGGCGC
GTCTCCGCGGGGTTTCGGCAGATGGGCGTGCAGCTGGCCGGGATCGGATTCATCGTGGCGCTAAACGTCGTCGTCACCAG
CATCGTGTGCCTGCTCGTCCGGGTGGCCGTGCCGCTCCGGCTCAGCGAGGAGCAGCTGGCGGCCGGCGACGACGCCATAC
ACGGCGAGGACGCGTACGCGGTGTGGGGCGACGGCGAGACGTACGAGCAGTCCGTGCATGGCAGCCGGCGATACCAAATG
ACGGCCAATCCCATGTCGTCCAAGGTTGATGAGATCATCTGAGCAGTCCTATGCATT-GTAAGATCGATACTAGTGCATT
GTGGAGTATGTTTCACGGATTTG------CTGTTTAGGAGTA------GATCCTATAGT-CCACCAACGAATGTCCAAGG
AAA--GTAGGAACAGCCTCCTCTACTGGTCAAACCCACAAGA-TGTAGTTTTCGATCGTTGAAGCAGTCCAAAGGGGCTG
AGCCCTTGGATCAACATATAGCTAGCGATCCTCATCCCCAAG-----TTAATTGCATATAAGTATCATATTTGTGTCTAG
GGTAACAAATTGGCACCAGTTTTCGCATTT--------------------------------------------------
--------------------TTTGTTTGCAGATCAGTACCGAATTTAGGGCAGGCCGCAACAAATCACACCGATTTGTGT
TTGAACCGGTTTTGACAACGGAACTA------------------------------------------------------
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--------------------------------------------------------------------ATGACGCGTTGT
GTGCATGTTCTTTTGTAGAAAACCCCCTTGCTCTATATTTGACTCGTGGCGCGTCGTGGGGAGTGCACCCCCACGTAGAC
ACGAATCTCACACGAGCCCTTTTTTGCAAATGAGGTGCATGATTAAATATAAAGCAATGGATTTTTCTACAAATGAACAT
GCACATGATG
>chr5B_1319
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-------------------------------------------------------------------------------G
CCACCGTCGTCTACTTCCAGTGCGTGTTCGCGGCCATCACGCTCATCCTGGTGGCGGGGTCGCTGCTGGGCCGCATGAGC
TTTCTCGCCTGGATGCTCTTCGTGCCGCTCTGGCTCACCTTCTCCTACACCGTCGGCGCCTTCTCCGTCTGGGGCGG---
CGGCTTCCTTTTCCAGTGGGGCGTCATCGACTACTGCGGCGGCTACGTCATCCACATCCCCGCCGGAGTCGCCGGCTTCA
CCGCCGCATACTGGGTCGGGCCAAGGACCAAGAAGGACCGGGAGAACTTCCCGCCCAACAACATCCTGTTCGCGCTCACC
GGCGCTGGGCTGCTGTGGATGGGGTGGGCCGGGTTCAACGGCGGCGGGCCGTACGCGGCCAACGTCGACTCGTCCATGGC
CATCCTGAACACCAACATCTGCACGGCGGCGAGCCTCATCGTGTGGACCTGCCTCGACGCCGTCTTCTTCAAGAAGCCCT
CCGTGGTCGGCGCCGTCCAGGCCGTGATCACCGGACTCGTCTGCATCACGCCAGGC------------------------
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>chr5D_1319
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-------------------------------------------------------------------------------G
CCACCGTCGTCTACTTCCAGTGCGTGTTCGCCGCCATCACGCTCATCCTGGTGGCCGGGTCGCTGCTGGGCCGCATGAGC
TTCCTGGCGTGGATGCTCTTCGTGCCGCTCTGGCTCACCTTCTCCTACACCGTCGGCGCCTTCTCCGTGTGGGGCGG---
CGGCTTCCTCTTCCACTGGGGCGTCATCGACTACTGCGGCGGCTACGTCATCCACATCCCCGCCGGCGTCGCCGGCTTCA
CCGCCGCGTACTGGGTCGGGCCAAGGACCAAGAAGGACAGGGAGAGCTTCCCGCCCAACAACATCCTGTTCGCGCTCACC
GGCGCCGGGCTGCTGTGGATGGGGTGGGCCGGGTTCAACGGCGGCGGGCCGTACGCGGCCAATGTCGACTCGTCCATGGC
CATCCTGAACACCAACATCTGCACGGCGGCGAGCCTCATCGTCTGGACCTGCCTCGATGCCGTCTTCTTCAAGAAGCCCT
CCGTGGTCGGCGCCGTCCAGGCCGTGATCACCGGTCTCGTCTGCATCACGCCAGGC------------------------
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>chr4A_1319
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-------------------------------------------------------------------------------G
CCACCGTCGTCTACTTCCAGTGCGTCTTCGCGGCCATCACGCTCATCCTCGTGGCTGGGTCGCTGCTGGGCCGCATGAGC
TTCCTGGCGTGGATGCTCTTCGTGCCGCTCTGGCTCACCTTCTCCTACACCGTCGGCGCCTTCTCCGTGTGGGGTGG---
CGGCTTCCTCTTCCACTGGGGCGTCATCGACTACTGCGGCGGCTACGTCATCCACATCCCCGCCGGCGTCGCAGGCTTCA
CCGCCGCGTACTGGGTCGGGCCAAGGACCAAGAAGGACAGGGAGAGCTTCCCGCCCAACAACATCCTGTTCGCGCTCACC
GGCGCCGGGCTGCTGTGGATGGGGTGGGCCGGGTTCAACGGCGGCGGGCCGTACGCGGCCAACGTCGACTCCTCCATGGC
CATCCTGAACACCAACATCTGCACGGCGGCGAGCCTCATCGTGTGGACCTGCCTCGACGCCGTCTTCTTCAAGAAGCCGT
CCGTGGTCGGCGCCGTCCAGGCCGTGATCACCGGGCTCGTCTGCATCACGCCAGGC------------------------
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>chr3A_1329
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---------TCTACTTCCAGTGCGTCTTCGCCGCCATCACGCTCATCCTCCTCGCCGGCTCGCTGCTGGGCCGCATGAAC
ATCAGGGCCTGGATGATCTTCGTGCCGCTCTGGCTCACCTTCTCCTACACCATCGGCGCCTTCTCGCTCTGGGGCGG---
AGGCTTCCTCTTCCAGTGGGGCGTCATGGACTACTCCGGCGGCTACGTCATCCACCTCTCCTCCGGGATCGCCGGGTTCA
CCGCCGCGTACTGGGTCGGGCCCAGGTCCACCAAGGACAGGGAGAGGTTCCCGCCCAACAACGTGCTCCTCATGCTCGCC
GGCGCCGGCATACTCTGGATGGGGTGGGCCGGGTTCAACGGCGGTGACCCTTACGCCGCCAACCTCGACTCCTCCATCGC
AGTGCTCAACACCAACATCTGCGCCGCGACCAGCCTACTCGTCTGGACCTCCCTGGACGTCATCTTCTTCAAGAAGCCCT
CCGTGATCGGCGCCGTCCAGGGCATGATCACCGGCCTCGTCTGCATCACGCCCGGCGCGGGTCTGGTCCAGGGGTGGGCG
GCGATCGTGATGGGGGTCCTCTCCGGCAGCATCCCGTGGTTCACCATGATGGTCGTGCACAAGCGGTCCAAGCTGCTGCA
GCGCGTGGACGACACGCTGGGCGTGTTCCACACCCACGCCGTGGCGGGGTTCCTCGGCGGCGTGACCACGGGGCTCTTCG
CGGAGCCGACGCTGTGC---------------------------------------------------------------
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>chr3A_1329
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---------TCTACTTCCAGTGCGTCTTCGCCGCCATCACGCTCATCCTCCTCGCCGGCTCGCTGCTGGGCCGCATGAAC
ATCAGGGCCTGGATGATCTTCGTCCCGCTCTGGCTCACCTTCTCCTACACCATCGGCGCCTTCTCGCTCTGGGGCGG---
AGGCTTCCTCTTCCAGTGGGGCGTCATGGACTACTCCGGCGGCTACGTCATCCACCTCTCCTCCGGGATCGCCGGGTTCA
CCGCCGCGTACTGGGTCGGGCCCAGGTCCACCAAAGACAGGGAGAGGTTCCCGCCCAATAACGTCCTCCTCATGCTCACT
GGCGCCGGCATACTCTGGATGGGGTGGGCCGGGTTCAACGGCGGTGACCCTTACTCCGCCAACGTCGACGCTTCCATCGC
CGTCCTCAACACCAACATCTGCGCAGCGACCAGCCTCCTCGTCTGGACCTGCCTCGACGTCATCTTCTTCAAGAAGCCCT
CCGTCATCGGCGCAGTCCAGGGCATGATCACTGGCCTCGTCTGCATCACTCCCGGCGCGGGTCTGGTCCAGGGGTGGGCG
GCGATCGTGATGGGCATCCTGTCCGGCAGCATCCCGTGGTTCACCATGATGGTCGTGCACAAGCGCTCCAGGCTGCTGAT
GCACGTGGACGACACGCTGGGCGTGTTCCACACCCACGCCGTGGCGGGGTTCCTCGGCGGCGCGACCACGGGGCTCTTCG
CGGAGCCG------------------------------------------------------------------------
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>chr3D_1329
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---------TCTACTTCCAGTGCGTCTTCGCCGCCATCACGCTCATCCTCCTCGCCGGCTCGCTGCTGGGCCGCATGAAC
ATCAGGGCCTGGATGATCTTCGTGCCTCTCTGGCTCACCTTCTCCTACACCATCGGCGCCTTCTCGCTCTGGGGCGG---
AGGCTTCCTCTTCCAGTGGGGCGTCATGGACTACTCCGGCGGCTACGTCATCCACCTCTCCTCCGGGATCGCCGGGTTCA
CCGCCGCGTACTGGGTCGGGCCCAGGTCCACCAAGGACAGGGAGAGGTTCCCGCCCAACAACGTGCTCCTCATGCTCGCC
GGCGCCGGCATACTCTGGATGGGGTGGGCCGGGTTCAACGGCGGTGACCCTTACGCCGCCAACCTCGACTCCTCCATCGC
CGTGCTCAACACCAACATCTGCGCCGCGACCAGCCTCCTCGTCTGGACCTCCCTGGACGTCATCTTCTTCAAGAAGCCCT
CCGTCATCGGCGCGGTCCAGGGCATGATCACCGGCCTCGTCTGCATCACGCCCGGCGCGGGTCTCGTCCAGGGGTGGGCG
GCGATCGTGATGGGCATCCTGTCCGGCAGCATCCCGTGGTTCACCATGATGGTCGTGCACAAGCGGTCCAAGCTGCTGCA
GCGCGTGGACGACACGCTGGGCGTGTTCCACACCCACGCCGTGGCGGGGTTCCTCGGCGGCGTGACCACGGGGCTCTTCG
CGGAGCCGACGCTGTGC---------------------------------------------------------------
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>chr3D_1329
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---------TCTACTTCCAGTGCGTCTTCGCCGCCATCACGCTCATCCTCCTCGCCGGCTCTCTGCTGGGTCGCATGAAC
ATCAGGGCCTGGATGATCTTCGTCCCGCTCTGGCTCACCTTCTCCTACACCATCGGCGCCTTCTCGCTCTGGGGCGG---
AGGCTTCCTCTTCCAGTGGGGCGTCATGGACTACTCCGGCGGCTACGTCATCCACCTCTCCTCCGGGATCGCCGGGTTCA
CGGCCGCGTACTGGGTCGGGCCCAGGTCCACCAAAGACAGGGAGAGGTTCCCGCCCAACAACGTGCTCCTCATGCTCACT
GGCGCCGGCATACTCTGGATGGGGTGGGCCGGGTTCAACGGCGGCGACCCTTACTCCGCCAACGTCGACGCTTCCATCGC
CGTGCTCAACACCAACATCTGCGCAGCGACCAGCCTCCTGGTCTGGACCTGCCTCGACGTCATCTTCTTCAAGAAGCCCT
CCGTCATCGGCGCAGTCCAGGGCATGATCACTGGCCTCGTCTGCATCACTCCCGGCGCGGGTCTGGTCCAGGGATGGGCG
GCGATCGTGATGGGCATCCTGTCCGGAAGCATCCCGTGGTTCACCATGATGGTCGTGCACAAGCGCTCCAGGCTGCTGAT
GCACGTGGACGACACGCTGGGCGTGTTCCACACCCACGCCGTGGCGGGGTTCCTCGGGGGCGCGACCACGGGGCTCTTCG
CGGAGCCGACGCTGTGCGGCT-----------------------------------------------------------
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>chr3B_1329
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---------TCTACTTCCAGTGCGTCTTCGCCGCCATCACGCTCATCCTCCTCGCCGGCTCTCTGCTGGGTCGCATGAAC
ATCAGGGCCTGGATGATCTTCGTCCCGCTCTGGCTCACCTTCTCCTACACCATCGGCGCCTTCTCGCTCTGGGGCGG---
AGGCTTCCTCTTCCAGTGGGGCGTCATGGACTACTCCGGCGGGTACGTCATCCACCTCTCCTCCGGGATCGCCGGATTCA
CGGCCGCGTACTGGGTCGGGCCCAGGTCCACCAAAGACAGGGAGAGGTTCCCGCCCAACAACGTGCTCCTCATGCTCACT
GGCGCCGGCATACTCTGGATGGGGTGGGCTGGGTTCAACGGCGGCGACCCTTACTCCGCTAACATCGACGCTTCTATAGC
CGTGCTCAACACCAACATCTGCGCAGCGACCAGCCTCCTGGTCTGGACCTGCCTCGACGTCATCTTCTTCAAGAAGCCCT
CCGTCATCGGCGCCGTCCAGGGCATGATCACCGGCCTCGTCTGCATCACTCCCGGCGCGGGTCTCGTCCAGGGGTGGGCG
GCGATCGTGATGGGCATCCTGTCCGGAAGCATCCCGTGGTTCACCATGATGGTCGTGCACAAGCGCTCCAGGCTGCTGAT
GCACGTGGACGACACGCTGGGCGTGTTCCACACCCACGCCGTGGCGGGGTTCCTCGGCGGCGCGACCACGGGGCTCTTCG
CGGAGCCGCAGCTGTGC---------------------------------------------------------------
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>chr3B_1334
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--------------TTCCAGTGCGTCTTCGCCGCCATCACGCTCATCCTCCTCGCCGGCTCGCTGCTGGGCCGCATGAAC
ATCAGGGCCTGGATGATCTTCGTGCCGCTCTGGCTCACCTTCTCCTACACCATCGGCGCCTTCTCGCTCTGGGGCGG---
AGGCTTCCTCTTCCAGTGGGGCGTCATGGACTACTCCGGCGGCTACGTCATCCACCTCTCCTCCGGGATCGCCGGGTTCA
CCGCCGCGTACTGGGTCGGGCCCAGGTCCACCAAGGACAGGGAGAGGTTCCCGCCCAACAACGTGCTCCTCATGCTCGCC
GGCGCCGGCATACTCTGGATGGGGTGGGCCGGGTTCAACGGCGGTGACCCTTACGCCGCCAACCTGGACTCCTCCATCGC
CGTGCTCAACACCAACATCTGCGCCGCAACCAGCCTCCTCGTCTGGACCTCCCTGGACGTCATCTTCTTCAAGAAGCCCT
CCGTCATTGGCGCCGTCCAGGGCATGATCACCGGCCTCGTCTGCATCACGCCCGGCGCGGGTCTCGTCCAGGGGTGGGCA
GCGATCGTGATGGGGATCCTGTCCGGCAGCATTCCGTGGTTCACCATGATGGTCGTGCACAAGCGGTCCAAGCTGCTGCA
GCGCGTGGACGACACGCTGGGCGTGTTCCACACCCACGCCGTGGCCGGGTTCCTCGGCGGCGTGACCACGGGGCTCTTCG
CGGAGCCGACGCTGTGC---------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
---------S--S-------------SS-SS-S--S-----------------------------------S--------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----------S-----S-----S--------SSSS--------
---------------------S-S----------------S------S-----------------S--------------
-------------------------S--S---------------------------------------------S-----
-----S-----S--------------S-----------S--------S-------------------------------S
-S----------------------------------------S-S-----------------------------------
----------------------S------S-S-----------S------------------------------------
--------------------------------------------S-----------------------S-----------
-------------------------------------------------------------------------------S
--------------------------------------------------------S-------S------------S--
---------------------------------S----------------------------------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
------------------------------------S------------SS-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S---------------S--------------
--------------------------------------------------------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S--------------------S------
-----------------------------------------------S-----------S--------------------
----S-S-------------------------------------------------------------------------
----S--------------------------S------------------------------------------------
---------------------------------------------------------S----------------------
--------------------------------------S---SSSSSS----------------S---------------
---SS--------S---S--SSSSSS--------------S-S------------------------S--S---------
-S----S-------------------------SSSS-SS-SSSSSSS----------------------------S----
-S----S--------SS-SS-S-SSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS-------------S----S-------S------S---------------SS----S-S--
------SS----------SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-S
-------------------------S---S--S--S----------------S-S-----------------S----S--
S----------SSS-S-S-------------------------------S----S--S--SS-----------S------
----------
>forward_333
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------ACGGTAC
AACGAGTTCGCTT-------------------------------------------------------------------
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>reverse_1650
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-------------------------------------------------TCCGCCCAACAACATCATCC-----------
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>forward_422
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--ACAAATGGCGCTTGCAACAT----------------------------------------------------------
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>reverse_2208
--------------------------------------------------------------------------------
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-----------------------------------------------GTTCATCGTGGCCCTAAACG-------------
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--------------------------------------------------------------------------------
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>forward_1650
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------CCAAGGACAGGGAGACGTTT------------------------------
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>reverse_2585
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------ACGGTCAAACCCACAACACT------------------------------------
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--------------------------------------------------------------------------------
----------
