>input_sequence_52555
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----------------------------------------------------ATGCTACTGGAATGGAACATTGGCCTTA
CAGCAC-AAAAGGACCGGAATGGGAGCACCCCCCTTCACTTTGCAACATCAATTCTACATGCAAGAGGTGTACACTTCTG
GATCTTCCACCATTGGTATACATGGTTTCATGGTTTTTGGCATTCAAGCATGCCATTCTATCATGTGCTGCAAGTTATCT
TCCATCCTTGGTTCCCATGGAATCATAGTACTTGGCACTCAGGCATGCCGTTTGATCCAGTGCTGCAAGCTAACCCAACT
CCAATGTATCAGGCAGATGGTCAGGGACTATTCCCTATACACATTGCTGCTTCCATAGGTGTGAACAAAGCCATTGTCAA
ACTTTTAGACAAGTGCCCCAAAATTGCTGGTGTGCGCAATATGAAGGGAAGAACTTTCCTTCATGTCGCTATCGAAAAGA
AGAAATGGAACATAGTCGCACTTGCTTGCCAAACTCAGTCGTTATCATGGATTTTGAACATGCAAGACAATGAAGGAAAC
ACTGTGCTACACCTAAGTGTAATGCTTGGGCATCAGGACATCTTCTTTTTGCTCCTGGAGAATCCTGAAGTGCGGTTAAA
TCTAACAAATAAAAAGGGGGAAACTCCTCTAGATCTATCGCAGAGTAAGATTCGCGCTGGATGTTTTTGTGCATGGGTAA
TGTACTTCCTTTCCTTTCATTTCATGCTTATTTTTCTCCCACAAAGGCAAATGTAGTAGCGCTAGTTCATATGGATGACA
CGAATTTCATATTTGCTTTT-GCAGAACCCCAGATTTGTGATGAATGCTGCCTTAATATATTGTCGCGCTAAACATGGCA
ATCGCCGATTGGATCACTTTGAAGAA----CAGTACATTCAAGCAGAGGATGAAGAGAAAGAGTCAGACAAACTGACAGC
TTCGACTCAAACATTAGGCATT-GGGTCAGTGCTAATGGCAACTGTGGCGTTTACTGCAACATTCACTCCACCAGGGGAT
TACAGTGACAATGGCACACCGAATCTTTCTAGGAGGTATGTTTTTTATGCATTCATCGCGGCCAACTCGCTGGCATTCGG
GTGCTCTGGTTTAACTACTATCAACCTCATGTACTCTGGGACAGCTATCGTCAACGTGCCTTTGCGCAGCAAACACTTTG
ACGTAGCTGTGGTCTTCGTGTTTTGTTCGGTCACGAGCTTGGCTACAGCCTTTGTGCTAGGCC--TATGTGGTGTTGGAC
CCATTTGCCCATATGACTTCAGTTGCAGTGTGTGTAGTGGCTTCTCTTTTTGTGTCTGTGTGGATACATAGACCCCCTGC
GAGGCCAAGCTGTAGCTAGAGCTTTATTTCATAGAATGGGTTATCCAGCACTGGTGATATCCGCACGCATTCTCATCATC
CGGACAGCGATGGTGTACTTGTGA--------------------------------------------------------
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------------------------------------------------------------------------------
>chr3A_1_TraesCS3A01G537000
AAGTGGTGGCGATAACACACGATTGACTCCGATGGTGGTGCTCCTCGAGTACCCAGTCTCAAGCTATGGGGGTGAAAACC
TAGGTCTGAGCCGAGTTGGTTGTACCTTGCAATGCGATGTTTTTGTGTCATTACCTTGTTGAAGGAATTGCTCGAATATG
TGCGGGCTAGTTCTTCATGGTGAAAACCTAGACTCTGGCTTCTAGTGGTCAGATCTGTTGAAGAATCCCGTTGTCCTTGT
GATGTCTTCAGATGGTTGATGCGGATTTGATTGCTTCAGTTTTTATTTTATTTTTCCATGCTTAGGCATAGCTTTGGCTT
ATATGACTGTGCTATCTACCGACAGGTTGTGTGTGTGTGTGTGCGCGCGCGTGTGTGTAGGTATTGATGTTGGGTGTGTG
CATCCTGACAATGCATAGGGCAGATGTGCTCCTTTTAGTTGTATCTGCTTCATGCTTCATTTTAAGTAATAAAGTCCACC
CTTTGTTGAAAAGAAAAAATATGCGGGGCACATCCTAACCAAACGATATATGGGAATTTTCTAGATAAATTTTCACGGCG
ACATGGCTAATGTAACTATTTACAGTACATACTAAGATTGTATCGAGCAATATTTTGGGTATCCACGACGTGCTAGTTCT
TTTAATCTTGGCATAAGGGCTCTTTTGAAAACATCTGTTTGGACATAGAAGTAGTAAATGTTCAGTAATACTTATCTAAA
ATTTGCTATGTTACATACAAATATAATTCTTCATTCTGCAGTTAGATTTAAGATTAAAAGCTGAATCATTTTTGTGATAT
CATCCTTGGTGTGTGGCAAATGAACTGTGCTAAATATCAAGTCCTACTTTA------------AATCGTCATACCATCTT
CCTGTGGCGTGGCTAATTATCCATAATAAGTTTCATAGTGGTTTGATTATATATTTTTGATAGAATTAAGGAGGCAAAAA
AAGAAAAATAATAAGTGGTGATTACTTTTGGTGTTTGGCAGCCATGACAGAAATGCTACTGGAATGGAACATTGGCCTTA
CAGCAC-AAAAGGACCGGAATGGGAGCACCCCCCTTCACTTTGCAACATCAATTCTACATGCAAGAGGTGTACACTTCTG
GATCTTCCACCATTGGTATACATGGTTTCATGGTTTTTGGCATTCAAGCATGCCATTCTATCATGTGCTGCAAGTTATCT
TCCATCCTTGGTTCCCATGGAATCATAGTACTTGGCACTCAGGCATGCCGTTTGATCCAGTGCTGCAAGCTAACCCAACT
CCAATGTATCAGGCAGATGGTCAGGGACTATTCCCTATACACATTGCTGCTTCCATAGGTGTGAACAAAGCCATTGTCAA
ACTTTTAGACAAGTGCCCCAAAATTGCTGGTGTGCGCAATATGAAGGGAAGAACTTTCCTTCATGTCGCTATCGAAAAGA
AGAAATGGAACATAGTCGCACTTGCTTGCCAAACTCAGTCGTTATCATGGATTTTGAACATGCAAGACAATGAAGGAAAC
ACTGTGCTACACCTAAGTGTAATGCTTGGGCATCAGGACATCTTCTTTTTGCTCCTGGAGAATCCTGAAGTGCGGTTAAA
TCTAACAAATAAAAAGGGGGAAACTCCTCTAGATCTATCGCAGAGTAAGATTCGCGCTGGATGTTTTTGTGCATGGGTAA
TGTACTTCCTTTCCTTTCATTTCATGCTTATTTTTCTCCCACAAAGGCAAATGTAGTAGCGCTAGTTCATATGGATGACA
CGAATTTCATATTTGCTTTT-GCAGAACCCCAGATTTGTGATGAATGCTGCCTTAATATATTGTCGCGCTAAACATGGCA
ATCGCCGATTGGATCACTTTGAAGAA----CAGTACATTCAAGCAGAGGATGAAGAGAAAGAGTCAGACAAACTGACAGC
TTCGACTCAAACATTAGGCATT-GGGTCAGTGCTAATGGCAACTGTGGCGTTTACTGCAACATTCACTCCACCAGGGGAT
TACAGTGACAATGGCACACCGAATCTTTCTAGGAGGTATGTTTTTTATGCATTCATCGCGGCCAACTCGCTGGCATTCGG
GTGCTCTGGTTTAACTACTATCAACCTCATGTACTCTGGGACAGCTATCGTCAACGTGCCTTTGCGCAGCAAACACTTTG
ACGTAGCTGTGGTCTTCGTGTTTTGTTCGGTCACGAGCTTGGCTACAGCCTTTGTGCTAGGCC--TATGTGGTGTTGGAC
CCATTTGCCCATATGACTTCAGTTGCAGTGTGTGTAGTGGCTTCTCTTTTTGTGTCTGTGTGGATACATAGACCCCCTGC
GAGGCCAAGCTGTAGCTAGAGCTTTATTTCATAGAATGGGTTATCCAGCACTGGTGATATCCGCACGCATTCTCATCATC
CGGACAGCGATGGTGTACTTGTGAGAGGTTCCCATGATATATAGCAGAATCCTCCTACCTTCAAAGCTCAATGAGCGCTT
GTTGGTTAACTATT------------------------------------------------------------------
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----------------------------------------------------------------------TTTATTTGTT
AGCGTTGCAACATTTTTTGTCCTACTACCATCAGAGCAGCATGGTAAGTTGCTTGCATTGAGCCCAGAAAAGGATGGGGA
GAAAGGAACAACTGCTTGCACTATTTCTATTTTTTGTTAACTATTTTGAAATATAA---AAAACAATTGTGCTCCTACTA
GCACACAATTGGACTTGTCTTA-AT----TTT-----TTTCTTCATT-CAAAT-CCTCGGCCTTGTTGAATTGAAACAGT
TGCATTC--------C-TT---------TT-TTGCAGACAAGCAGCTTATGCTCTTCAGACGAGTTGAT-CAGTTTGATC
CTCCACAGCTCCCGTTCACCTTTGTTCCCAACATGAGGGTGTCCATGTTGCGCTTGCTTAAAATTGTCAATGTTACACAT
CACATTTTCGGTTTCAGCGCATGGCCTCATGAAGACAATTCTGCGTCCTACACAATCAAACCGGATGCAGGGATCCTGCA
ACCACAGTCCACGCAAGCAATCAAGGTAAGAAGGACCCCAAGGAAAACGGACACGGAAGACATACAGTGCAAAGACAAGA
TTTTTGTGTGGAATGGAATTGTGACTCAAGGTGTCAAAGTTAGCGATGTCGGTACGTACTGGAAGAATGAAGATAAAGAG
TTGCCCATTGTTCTAACAAAGGTGAGTTTCCTAATTAATT----------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------GGTACAGAAAGAT------------
----------------------------------ACAACTATTACGGTAGTAATTGACACAGCTAATAACTATGGGC---
-TTCCTATATATGTTGACAGCCACAGACTGGAGAAAGCAGTTCAAGGTAGGATC------ATGGTCGAATCTATTGGACG
TAAAG--------GCTTCACAAGGTAATTAATGCATGCTTATTTCTCATTATACCT--TTTTTACTTGGCTATAAAAACA
TTCCTTGTGGCTTTG--TAGTCTGAGCATTTTGTTAAAATTCTTGAACTGTGTTGCTAGTCTCCAAGCTGTTCCTTTC
>chr3B_717
TAAATAATTGCTAG------------------------------------------------------------------
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---------GTTACATGCAAATATAATTCTTTATTTTGAAGTTAGATTTAAGATTAAAAACTGAATAATGTTTGCGATAT
CATCCTTGGTCTGTGGCAAATGAACTGTGCTAAATATCAAGTCCTAGTTTAAACCTTGAAAAAAATCGGCATACCATCTT
CCTGTGGCGTGGCTAAATATCCATAATAAGTTTGATAGTGGTTTGATTTTATATATTTGCTAGAATTAAGGAGGCAAAAA
AAGAAAAATACTAAGAGGTGATTACTTTTGGTGTTTGGCAGCCATGATAGAAATGCTACCGGAATGGAACATTGGTCTTA
CAGCGCAAAAAGGACCGAAATGGGAGCA-CCCCCTTCACTTTGCAACATCAATTCTACACACAAG---------------
-------CACTAGTAGAAAACATGGCCT--TGGTTTTTGCCAGA------------------------------------
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-----------------------------CCAGAGTTGTGATGAATGCTGCTTTAATATATTGTCGTGCTAAACATGGCA
ATCGCCGATTGGATCACTTTGAAGAAAGAACAGTACATTCAAGCAGAGGATTGAGAGAAAGAATCAGACAAACTGACAGC
TTCGACTCAAGCGTTGGGCATTGGGGTCAGTGCTAATG------------------------------------------
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>chr3B_973
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------------------------CTTTTGGTGTTTGGCAGCCATGACAGAAATGCTACTGGAATGGAACATTGGCCTTA
CAGCGC-AAAAGGACCGAAATGGGAGCACGCTCCTTCACTTTGCAACATCAATTCTACACGCAAGAGGTGTACACTTCTG
GATCTTCCGTCATTGGTATACATGGTTTCATGGTTTTTGGCATTCAAGCATGCCATTCTATCCTGTGCTGCAAGTTATCT
TCCATCCTTGGTTCCCATGGAATCATAGTACTTGGCATTCAGGCATGCCGTTTGATCCAGTGCTGCAAGCTAACCCAACT
CCGATATATCAGTCAGATGGTCAGGGACTATTCCCTATACACATTGCTGCTTCCATAGGTGTGAACAAGGCCATTGCCAA
ATTTTTAGACAAGTGCCCCAACATTGCTGGTGTGCGCAATATGAAGGGAAGAACTTTCCTTCATGTCGCTGTCGAAAAGA
AGAAATGGAACACAGTCGCACTTGGTTGC-AAACTCCATCGTTATCATGGATTTTGAATATGCAAGACAATGAAGGAAAT
ACTGCACTACACCTAAGTGTAATGCTTGGGTATCAGGACATCTTCTGTTTGCTCCTGGAGAATCCTAAAGTGCGGCTAAA
TCTAACAAATAAAAAGGGGGAAACTCCTCTAGATCTATCACAGAGTAAGATTCGCGCTGGATGTTTTTGTGCATGGGTAA
TGTACTTTCTTTCCTTTCATTTCAGCCTTAATTTTCTCCCACAAAGGCAAATGTAGTAGCACTAGTTCATATGGATGACA
CAAATTTCATATTTGCTTTTTGCAGAGCCCCAGATTTGTGATGAATGCTGCTTTAATATACTGTCACGCTAAACATGGCA
ATCGCCGATTGGATCACTTTGAAGAA----CAATACATTCAAGCAGAAGATGAAGAGAAAGAATCAGACAAACTGACAGC
TTTGACTCAAACATTGGGCATT-GGGTCAGTGCTAATGGCAACTGTGGCATTTACTGCAACTTTCACTCCACCAGGGGAT
TACAGTGACAATGGCACACCGAATCTTTCTAGGAGGTATGTCTTTGATGCATGCATCGCAGCCAACTCGCTGGCATTCGG
GTGCTCTGGTTTAACTACTATCAACCTCATGTACTCTGGGACAGCTATCGTCGACGTGCCTTTGCGCAGCAAACACTTCG
ACGTAGCTGTAGTCTTCGCATTTTGTTCGGTCACAAGTTTGGCTACGGCCTTTGTGCTAGGCCTATATGTGGTGTTGGAC
CCATTTGCCCATATGACTTCAATTGCAGTGTGTGTGGTGGCTTCTCTTTT-GTGTCTGTGTGGATACATAGACCCCCTGC
AAGGACAAGCTGTAGCTAGAGCTTTATTTCGTCGAATGGGTTATCCAGCACTGGTGATATCCGCACGCATTCTCATCATC
CGGACAACGATGGTGT----------------------------------------------------------------
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>chr3D_2416
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------------------------------------ATATATAGCAGAATCCTCCTACCTTCAAAGCTCAACGAGCG--T
GTTGGTTAACTTCCCTTTATTTAATGGGCAGTGATCTGCGCCGGCGCACCGTTTCGGCCGGTCGCGCGCGGGCCGTCAGA
TCAAATCGCGGAGACCGTCAGATTTAGGTAAAAAACTATTCGCCCAGCTTCCTTCTTCCTCTCGCAGAAACGTTGTCTCC
TCCCCGAGCGCCGCCGAGACCACGCCATACCCTGCGAGAAAACGGCCGAGCTTGAAGCACCACCGCGGCGTTCCCTCGTC
GCCGGTGGGCGCCCTCGCCGGCCTTCTGCGTTTGCCCAAGAACAGCGGTCGCCATGGATGCAGCTCCGCCGCCCGCGCTC
GTCGGAGATCCGCGCTCGCCATGGATGTAGCTCCTCTGGCCGCGCTCGCCATGGATGCAGCTCCGCTGGCCGCGCTCGCC
ATGGATGCAACTTCGCCGTTCGCGCTCGCCATGGATGGATCCCGCCTGCGCACGCCATGGATGCAGCTCCGCCTCGCTGG
CGATTGACTGGTTCCAGCAAATATAATTGGCCGTTGTAGCATTTTTCGTTGTTGGTCGTAACAAAATGAAGACACGGTTG
CAACAAAAAAGAAAGGTCGCCATTGTCGCTGGTTGTAGCTCGCCGTTGCAGGTAGCAAACATTTGCATTCTAAAAAAATG
AACGGATGTAACAAAACTCGTTGCCGGCGTAGCAAATACCTATGCCAGTTGTAACAAAAAGCCGTCATCGTCGTCGCGGG
TCGCAGCTCGGCCATGATGGATGTAGCAAAACATTATGCCGGTTGTAGCAAAAAACGATGCTAGTTGTAGCAAAACCGCG
ACGCCGGCTGTGTGTTATAGCAAAACGTGACGCTAGTTGTAGCAAAAATGCTATGCCAGCGCAAAAATCTATGCCGGTCG
ACGACGGCTGCCAGTCAATCAACGCCATTTGAATGAATGTAGCAAAAAACTTTTGCGGTAGTAGCAAAATCAAACTACGG
ATGCAGCAAAAACGCCGTCGCCGCCTTCATGAGGTCGCAGCTCCGCCTTACATGGATGTAGCGAAAAACCCCAACGTAGT
AGCAAAATCCCGCTACGGTTGCAGCAAAACATCGTTGTCGTCGTCGCGAGGTCCGAGCTCCGCCTGATGGATGTAGCAAA
AAGCTTCGCCGGTAGTAGCAAAATTCAACTACGGCTGCAACTTCCCCTTTTTGTGCAGTGCCATTGAAGCTTTCTATGTC
TATGTTTGAAGCTTTTTTCAATGGCTGTTGAAGCTTTTCTAGGTGACGGTTGCAACACTTCTATACGTGGGTGGATCCGG
GCATGGCGGGCAGGCAGCCATGGCGGGTGGCGAGGGAGCGCCTGGCCGCCGGCGACGGAGCTTGTGGTGGCCCAGTCGCT
ACCCGGGAGGAGGAGGGGGGGAGGGGATGCGCGCGCTTGAAGGCTGTAGGAAGGGTATGGATCTGGCCATGGCAGCAGGC
AGCCATGGCAGCTGACGAGGGAGCGCCTGGCCGCCGGCGATGGAGTCTGTGGTGGCCTAGTCGCAGCCCGGGGAGGGGAA
GGATGCGCGCACATAGGCTGGAGGTAGGGGATGGAGGCGCATAGGGAAGGAGGCGGGGATGCGGGGCCACTGCGCGGGCG
CGTTTGCCAGCGTGGCGTGCGAACCGGCGCAACGTTTCGGCCGGCGCACCGCGCCCAAACGTTTCCCTTATTTAATTGTT
AGCTTTGCACCATTTTTCTCTCCTACCGCCTCC-----------------------------------------------
------------------------------------------ATTTTGAAATTAAAAAAAAAACATTTGTCCTGCTACCC
GCACACATTTCGACCTGTCTTATA------TTTTTGTCTTCCTTG---AAAAT-CCTCGGACTTGTTGAATTGAAACAGC
TGCATTC--------C-TT---------TT-CTGCAGACAAGCAGCTTATGCACCTCAGACGAGTTGATCCAGTTTGATC
CTCCACAGCTCCCCTTCACCTTCCTTCCCAACATGAGGGTGTCCATGTTGCGCTTGCTTAAAATAGTCAATGTTACTGAC
CACATTGTCGGTTTCAGCGCATGGCCTCATGAAGACAATTCTGCGTCCTACATAATCGAACCAGATGCAGGGATCCTGCA
ACCACAGTCCACGCAAGCAATCAAGGTAAGAAGGACCCCAAGGAAAAAGGACACGGAAGACATACAGTGCAAAGACAAGA
TTTTTGTGTGGAATGGAATTGTGACTCAAGGTGTCCAAGTTAGCGATGTCGGTACGTACTGGAAGAATGAAGATAAAGAG
TTGCCCATTGTTCTAACAAAGGTGAGTTTCTTAATTAATT----------------------------------------
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>chr5B_2606
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------------------------------------------ATTTTGAAATTTC-----AAAAAAAATTCATGCTACTC
GCACACATTTCGACTTGTTATATT------TATTTT----CTTCATCCAAGAT-CCTTGGACTTTTTGAATTGAAACAGC
CGCATTC--------C-TT---------TTCTTGCAGACAAGCAACTTATGCACCTCAGACGAGTTGATCCAGTTTGATC
CTCCACAGCTCCCGTTCACCTTCCTTCCCAACATGAGGGTGTCCATGTTGCGCTTGCTTAAAATAGTCAATGTTACAGAT
CACATCGTCGGTTTCAGTACATGGTCTCATGAAGCCAATTCTGCATCATACACAATGGAACCGCGTGCAGGGATCCTGCC
ACCACAGTCCACACAAGCAATCAAGGTAAGAAGGACCCCAAAGAAAAATGAAACGGAAGACATGCAGTGCAAAGACAAGA
TTTTTGTGTGGAATGGAATTTTGACTGAAGGTGTCCAAGTTAGGGATGTCTGTACATACTGGAAGAACGAAGATAAAGAG
TTGCCCATTGTTCTAACAAAGGTGAGTTTCCTAATTAATT----------------------------------------
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>chr3B_2607
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-------------------------------------------TTTTGAAATTTC-----AAAAAAATTTCATGCTACTC
GCACACATTTCGACTTGTTATATT------TATTTT----CTTCATCCAAGAT-CCTTGGACTTTTTGAATTGAAACAGC
CGCATTC--------C-TT---------TTCTTGCAGACAAGCAACTTATGCACCTCAGACGAGTTGATCCAGTTTGATC
CTCCACAGCTCCCGTTCACCTTCCTTCCCAACATGAGGGTGTCCATGTTGCGCTTGCTTAAAATAGTCAATGTTACAGAT
CACATCGTCGGTTTCAGTACATGGTCTCATGAAGCCAATTCTGCGTCATACACAATGGAACCGCGTGCAGGGATCCTGCC
ACCACAGTCCACACAAGCAATCAAGGTAAGAAGGACCCCAAAGAAAAATGAAACGGAAGATATCCAGTGCAAAGACAAGA
TTTTTGTGTGGAATGGAATTTTGACTGAAGGTGTCCAAGTTAGGGATGTCTGTACATACTGGAAGAACGAAGATAAAGAG
TTGCCCATTGTTCTAACAAAGGTGAGTTTCCTAATTAATTTCTCAGTCT------TAAGTGTCCATTTACCCCTGTCAGT
TCCAATAACCC--ATCCCATT-G-GAATCGCCAATGAGCACCATACTAGG------------------------------
--------------------------------------------------------------------------------
--------------TATAATTGTTGGGATTGACTGTCTTGGTCCTAAACCAGCTAGGTACAGAAAGAT------------
----------------------------------ACAACTATTACGGTA---ATTGACACAACTAATAACTATGGGC---
-TTTCTATATATGTTG------ACAGCCTGGAGAAAGCAGTTCAAGGTAGGATCGGCAGCATGGTCGAATCTCTTGGACG
TAAAGCT-----GGCTTGACAAGGTAATTAATG-----------------------------------------------
------------------------------------------------------------------------------
>chr3B_2607
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-------------------------------------------TTTTGAAATATAAAACAAAACATTTGTCCTGCTACTC
GCACACAATTCGGCTTGTCTTATA------TCTTTTTTGTCTTCATT-AAAAT-CCTCAGACTTGTTGAATTGAAACAGC
TGCATTGTTCCCCTTC--T---------TTTTTGCAGACAAGCAGCTTATGCAACTCAGATGAGTTGATTCAGTTTGATC
CTCCACATCTCCAGTTCACATTCCTTTCCAACATGAGGGCGTCCATGTTGCGCTTGCTTAAAATAGTCAATGTTACAGAT
CACACTGTCGGTTTCAATACATTGTCTCGTAAAGAAAATTCCGCGTCGTACAGAATAGAACCGCATGCAGGGATCCTGTC
ACCACAGTCCACCAAAGTAATCAAGGTAAGAAGGACCCTAAAGGAATATGAAACGGAAGACATGCAATGCACAGACAAGC
TTTTTGTGTGGAATGG--TTGTGACTCAAGGTGTCAACGTTAGCGATGTCCAATTTCTCGGGGGGGATGAAGATAAAGAG
TTGCCCATTGTTCTAACAAAGGTGAGTTTC-TAATTAACTTGTCAGCCTTAAGTGT------CCACTTACCCCTGTCAGT
TTCAATAACCC--ATCCCCTT-GGGAATCGCCAATAGTAG------TACG------------------------------
--------------------------------------------------------------------------------
--------------TATAATTGTTGGGATTTACTGTCTTGGCCCTAAACC---TTGGTGCAGACAGAT------------
----------------------------------ATAACTATTACGGTA---ATCCACACAACTAATAACTATGGGC---
-TTCCTATATATGTTG------ACAGCATGGAGAAAGCAGTTCAAGGTAGAATCGGCAGCATGGTCGAATCTCTTGGACG
TAAAG--------GCTTGACAAGGTAATTAATGCATGCTTCTTTCTAATTACTACTACTTTTTACTCGGCTTTAAGAACA
TTGCTTGTGGCTTTAGTTAGTCTGAGCATTTTGCTAAAACTCTTGAACTGTGTTGCCGGTCTTCATGCTGT-------
>chrUn_2607
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-------------------------------------------TTTTGAAATTTC-----AAAAAAATTTCATGCTACTC
GCACACATTTCGACTTGTTATATT------TATTTT----CTTCTTCCAAGAT-CCTTGGACTTTTTGAATTGAAACAGC
CGCATTC--------C-TT---------TTCTTGCAGACAAGCAACTTATGCACCTCAGACGAGTTGATCCAGTTTGATC
CTCCACAGCTCCCGTTCACCTTCCTTCCCAACATGAGGGTGTCCATGTTGCGCTTGCTTAAAATAGTCAATGTTACAGAT
CACATCGTCGGTTTCAGTACATGGTCTCATGAAGCCAATTCTGCGTCATACACAATGGAACCGCGTGCAGGGATCCTGCC
ACCACAGTCCACACAAGCAATCAAGGTAAGAAGGACCCCAAAGAAAAATGAAACGGAAGATATCCAGTGCAAAGACAAGA
TTTTTGTGTGGAATGGAATTTTGACTGAAGGTGTCCAAGTTAGGGATGTCTGTACATACTGGAAGAACGAAGATAAAGAG
TTGCCCATTGTTCTAACAAAGGTGAGTTTCCTAATTAATTTCTCAGTCT------TAAGTGTCCATTTACCCCTGTCAGT
TCCAATAACCC--ATCCCATT-G-GAATCGCCAATGAGCACCATACTAGG------------------------------
--------------------------------------------------------------------------------
--------------TATAATTGTTGGGATTGACTGTCTTGGTCCTAAACCAGCTAGGTACAGAAAGAT------------
----------------------------------ACAACTATTACGGTA---ATTGACACAACTAATAACTATGGGC---
-TTTCTATATATGTTG------ACAGCCTGGAGAAAGCAGTTCAAGGTAGGATCGGCAGCATGGTCGAATCTCTTGGACG
TAAAGCT-----GGCTTGACAAGGTAATTAATG-----------------------------------------------
------------------------------------------------------------------------------
>chr3B_2609
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---------------------------------------------TTGAAATATAAAACAAAACGTTTGTCCTGCTACTC
GCACACATTTCGACTTGTTGTACTCCATATTT-----TTTCTTCATC-CAAGATCCTCAGACTTTTTGATTTGAAACAGC
TGCATTC--------CTTT---------TTTTTGCAGACAAGCAGCTTATGCAGCTCAGACGAGTTGATTCAGTTTGATC
CTCCACAGCTCCCGTTCAACTACCTTCCCAACATGCGGGTGTCCATGTTGCGCTTGCTTAAAATAGTCAATGTTACAGAT
CACATCGTCGGTTTCAATACATGGGCTCATGAAGACAATTCTGCGTCCTACGCAATAGAACCGCGTGCAGGGATCCTGCC
ACCACAATCCACGCAAACAATCAAGGTAAGAAGGACCCTAAAGGAAAATCAAACGGAGGACATGCAGTGCAAAGACAAGA
TTTTTGTGTGGAATGGAATTGTAACTGAAGGTGTCCAACTTAGCGATGTCGGTAAATACTGGAAGGATGAAGATAAAGAG
TTGAACGTTATTCTAACAAAGGTGAGTTTCCTAATTA-------------------------------------------
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>chr3B_2614
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--------------------------------------------------ATATAAA--AAAATAATTGTCCTGCTACCC
ACACACATTTGGACCTGTCTTATA------TT-----TGTCTTCAAT-CAAAATCCTTGGACTTCTTGAAT---AACTGC
TGCATCC--------C--TTTTTTTTTGTTTTTGCAGACAAGCAGCTTATGCACCTCAGACGAGTTGATTCAGTTTGATC
ATCCACAGCTCCCGTTCATCTTCCTTCCCAACATGAGGGTACCCATGTTGCGCTTGCTTAAAATAGTCAATGTTACAGAT
CACATCGTTGGTTTCAGTACATGGTCTCATGAAGCCAATTCTGCGTCGTACACAATGGAACCGCGTGCAGGGATCCTGCC
ACCACAGTCCACGCAAGCAATCAAGGTAAGAAGGACCCCAAAGAAAAATTTAACAGAAGACATGCAGTGCAAAGACAAGA
TTTTTGTGTGGAATGGAATTGTGACTGAAGGTGTCCAAGTTAGCGATGTCCAAATATACTGGAAGGATGACGATAAAGAG
TTACCCATTGTTCTAACAAAGGTGAGTTTCCTAATTAATTTGTCAGTCT------T------CCATTTACCTCTGTG-GC
TCCAATCACTC--ATCTCATCCG-GAATCGCCAATGAGTGCCAAGGACAAAAATAGTACTCCCTCTGTTCACTTTTATAA
GACCTTGAAGACATTTCAGACAATGTGCAAAACAGTTCATTTTGAGTTGTCTGAAACGACTTACAAAAATGAACGGAGGG
AGTATATACTATATTATAATTGTTGCGATGGACTGTCTTGGTCGTAAACC---TAGGT----ACAGAT------------
----------------------------------ACAACTATTACGCTA---ATTGATACAACTAATAACTATGGATGAG
TTTCCTATATATGTTG------GCAGCCTGGAGAAAGCAGTTCAAGGTAGGATCGG---CATGCTCAGATCTCTTGGACG
TAAAGTCGTAAAGGCTTGAGAAGGTAACTAATGCAAGCTTATTTCTCATTACTACT--TTTTTACTCGGCTATAAACACA
TTCCTTGTGGCTTTG--TAGTTTGAGCATTTTGTTAAAATTCCTGAACTGTGTTGCTAGTCTCCAAGCTGT-------
>chr3B_2645
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----ACATTTTGACCTGTCTTATAT----TTT-----TGTCTTCATC-CAAGATCCTCAGACTTGTTGAATTGAAACAGC
TGAATTC--------C--T---------TTTTTGCAGACAAGCAACTTATGCACCTCAGACGAGTTGATTCAGCTTGATC
CTCCACAGCTCCCCTTCACCTTCGTTCCCAACATGAGGGTGTCCATGTTGCGCTTGCTTAAAATTGTCAATGTTACACAT
CACATTGTCGGTTTCAGCGCATGGCCTCATGAAGACAATTCTGCGTCCTACACAATCGAACCGGATGCAGGGATCCTGCA
ACCACACTCCATGCAAGCAATCAAGGTAAGAAGGACACCAAAGAAAAATGAAACGGAAGGCATACAGTGCAAAGACAAGA
TTTTTGTGTGGAATGGAATTGTGACTGAAGGTGTCCAAGTTAGTGATGTCGGTATATGCTGGAAGAATGACGATAAAGAG
TTGCCCATTATTCTTACCAAGGTGAGTTTTCCAGTTAATTTGTCAGTCT------TAAGTGTCGATTTACCCCTGTCAGT
TCCAATAACAATAATCCCATTGG-GAATCGCTAATGAGTTCAAAT-----------------------------------
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-------------------------------------TTGAACTAAAACT---TAGGTACAGATACAACTATTATGTCAG
ACAAGAATTTAAGTATAACTTAGGTACAAATACAACTACTATTACGCTA---ATTGATACAGCTAATAACT---------
----------ATGTTG------ACAGCCTGGAGAAAGCAGTTCAAGGTAGGATCGGGATGGTCAGCTAATCTCTTGGACG
TAAAG--------GCTTGCGAAGGTAATTAATCTATGCTTATTTCTCACTACTACT--TTTTTACTCGGATATAAACACA
TTCCTTGTGGCTTTG--TAGTTTGAGCATTTTGTTAAAATTCTTGAACTGTGTTGCTAGTCTCCAAGCTGT-------
>chr3B_2678
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------------------------------------------------CAAGATCCTTGGACTTTTTGAATTGAAACAGC
CGCATTC--------C-TT---------TTCTTGCAGACAAGCAACTTATGCACCTCAGACGAGTTGATCCAGTTTGATC
CTCCACAGCTCCCGTTCACCTTCCTTCCCAACATGAGGGTGTCCATGTTGCGCTTGCTTAAAATAGTCAATGTTACAGAT
CACATCGTCGGTTTCAGTACATGGTCTCATGAAGCCAATTCTGCGTCATACACAATGGAACCGCGTGCAGGGATCCTGCC
ACCACAGTCCACACAAGCAATCAAGGTAAGAAGGACCCCAAAGAAAAATGAAACGGAAGATATCCAGTGCAAAGACAAGA
TTTTTGTGTGGAATGGAATTTTGACTGAAGGTGTCCAAGTTAGGGATGTCTGTACATACTGGAAGAACGAAGATAAAGAG
TTGCCCATTGTTCTAACAAAGGTGAGTTTCCTAATTAATTTCTCAGTCT------TAAGTGTCCATTTACCCCTGTCAGT
TCCAATAACCC--ATCCCATT-G-GAATCGCCAATGAGCACCATACTAGG------------------------------
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--------------TATAATTGTTGGGATTGACTGTCTTGGTCCTAAACCAGCTAGGTACAGAAAGAT------------
----------------------------------ACAACTATTACGGTA---ATTGACACAACTAATAACTATGGGC---
-TTTCTATATATGTTG------ACAGCCTGGAGAAAGCAGTTCAAGGTAGGATCGGCAGCATGGTCGAATCTCTTGGACG
TAAAGCT-----GGCTTGACAAGGTAATTAATG-----------------------------------------------
------------------------------------------------------------------------------
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS-------S--------------S---S--S--------------------S------S--S----S-----
----------S-----------------------------------S---------------------S-----------
----------------S----------------S--------------S-----S----S--------------------
----------S----S----------------------------------------------------------------
----S------------S-----------------------------------------S--------------------
--------------------------------------------------------------S-----------------
-------------------------------------S------------------------------------------
--S--S------S-------------------------------------------------------S-------S---
-S-------------------S------------------------------------------------S---------
------------S-----------S----S------SS--------------------S--------------------S
----SS------------------------S---------------S-------------------S--------S----
---------------------------------------S----------------------------------------
-------S----------------SS----S-----------------------------S-------------------
-S------------------------S------------------------S----------------------------
--------------------------------------------------------------S-----------------
---------------S---------------------------------S-----------S------------------
-----------------------------------------S---S------S------S--------------------
----------------------------------------------------S-------------------------S-
----------S-------SS--------------S--S--------S---------------------------------
---------------------S-------------S--------------S-----------------------------
S---S-------------------------S-S-----------------------------------------------
------S---------SSSSSSSSSSSSSSSSSSSS-----------------------------------S-----SS-
-----------SSS------------------------------------------------------------------
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--------------------------------------------------------------------------S-----
---S-----S-------SSSS-SSSSSS-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------S--S-----S
------------------------------------------------------------S------------------S
----------------------------------------------------S-S-------------------------
----------------------S---------------------------------------------------------
------S--------------------------------------------------S----------------------
-----------------------------------------------S--------------------------------
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-------------------------------------------------SSS----------------------------
----------------SSSSSS----S---------------------------------------------S-------
-----------------S---------------------------------SSS------------S-------------
-----------------------------------------------------------------------SSSSSSS
>forward_636
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--------------------------------------------------------GGGTATCCACGACGTGCTAG----
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>reverse_2159
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------------------------------------------------------------------------------TG
ACGTAGCTGTGGTCTTCG--------------------------------------------------------------
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>forward_1470
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----------CATAGTCGCACTTGCTTGCC--------------------------------------------------
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>reverse_4206
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---------------------------------------------AAGTTGCTTGCATTGAGCCC---------------
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------------------------------------------------------------------------------
