>input_sequence_52498
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-------------------------------------AGAGTTTATCTACTTATCTTGTTAC------------------
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---------------------------------------------------------------------------ATTTC
AGTTCTTTAATTTCCAGTAAATTGTCT---------------------CCTGTTCATCTCCTCTAATCCTCGTCAAGATC
AGATATTTGTCCATCTCTCCTCGTCAGATCCATCGGGATCCTGACAGTCGTGTGTACAGGTGCCCCGCCATGAAGCGCCC
TTCCGGTTCCTCGGCTGGTCGTGATCCCCGGGCTCCTCCTCCCGCTTCTGGCGGTGGCGGCTCCAGCGAGCCAGCCAAGA
AGCGGCAGCGGACCTCGAGCTCGAGCCAGGCCGAGGCATCCTCCTCGTCCTCACAGCCTCCACCGGCGCCGCCGGGGGAC
GCGAGAGCGGTGCCGGATCTGGGGGAGGACGTGATGTTCGAGGTGCTGCGGCGGGCGGAGGCGCGGACGCTGGCCGCCGC
GGCGTGCGTGAGCCGGGGCTGGCGGGTCCTCGCGCAGGACGAGCGGCTGTGGGAGGCGCCGTGCGTGAGGG-------AG
TGGACCGGCCTCGGCTTCTCGGAACAGCTGCTCCGCGCCGTCGTGCTCCCGCTCGGCGGCTTCCGCCGCCTGCACGCCGT
CTCCGTCCAGGCCCGACGGCGGTTCGGCGTTGGCTGC---GGGAATTGGCACGGCGTGCGGACGCCGGGACAGGGGAGGA
GGAGGGGGGTGCCGTGGACCGAGCACGAGCACAGGTGAGTATAGTGTTTT---------------TCTGATCTCACTGTC
TTGTGAGAGTGATTGCTCTGCTCCATCCATGTCATGCACAAGACTAGTTAGTGATATAAATTTTCTT-TCTTGAATTCAC
CATCAATCAATAGGATTTACATCATCAGATGGCTTTGCTAGCATTTAAAACATGG-AAATTGGAAGAATAATTCAACCAT
--GGAAGAACTGCTCTCTGAAACTGAATAAATTGTGTATGTTCACTAGGAATTGACGAGACAGTCATGTAGCATGATGTT
TGATGGC-------------------------------------------------------------------------
--------------CATCCAGCAAGAATTCATGATCCATACTGATACTG-------------------------------
----------------GTTGCTGAAGCTGATCATGCCTTGTTC----TTTGGCCAGCTTGTTCCTCTTAGGCCTGAAGGA
GTACGGAAGAGGGGATTGGAGGAACATATCACGCAACTTCGTGCAGACGAGGACGCCGACGCAGGTGGCCAGCCACGCGC
AGAAGTACTTTATCAGGCTTGGCTCAGGGGTGGCA---------AGGAGGTCGAGCATCCACGACATCACCACAGTTCAC
CTGACCGACGACCAGCCTCCCTCGCCATCCCAGTGATTTATGATCAACCAGTCCAGCGCACCGGCTC--AGCTCGGCAAC
GGGGCACTTCTCGCTGCCAGCCGACACCAAG-AACACGGCGCCGCGAGCGCGCCCTTCAGTTCGCCGAACTGGGCTCTCG
GGATGCCGAACTACGGCA-GGGTTTGCAAGATCAAGGCCTGCAGTGTGGTCC---------TCTA---------------
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>chr3B_1_TraesCS3B01G068800
TTCGTAAAGGCATCCAAGTGTTTTTTTTATTC--CATACCATAAGTATTGTATTGTTTTTGCTCTATTTCATCTGGAAAG
TATACGATTGGTTATCAAAATGACAATGTGGGTAGATGAATTCAAAGAATCCCAAAAGCAAGCGATTGACAAAAAAGTGA
GTATAAGTGTAGGTTATGATATAACTTCTCGTGAACTAGCTCTACCAAGTAGCAATTGCCGAAGAACAACCCAATACTTC
TGTAACTAGTTGTGTATACACAGAGGTCCCGGCCTGTCATCTTGCATCAAGGCCCCTAGCGTGTCAGGGCCGACCCTGCC
CATCGCCATCGTCGCCATCAATAACAAAAATGACGACCAACTCACGAGACAACTAATAGAGCGTTGGAGCCTTCTTAAGA
TGGCAACACACTTGTGATCAAAAGAGATAGATATATG-------------------------------------------
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--ACCGTGTTCTAAAATATAAATGAGATTTGGTGGCGAGGGAACAAATAC-------TGTTCCCAATCTATCAAACACCA
TTGTGTTTGTTTTCAATCTGTCAGGCACCATAACTTTCATGT--------TCGTGAAAAAGTTTTCCGATAAATATGATT
TT-AGCTCTTGATATCTTCATATGATTGTAAATTTATCCATTTACATATCAGCCCAAGAAGTATTTTTAGTTGGGAGATT
GAAGAAAGGAAGAAAATGAAAGCGTCTTAACAATAAAAAAGAAGCCGTCGATGCAGTCAGTTGCAAGCGCACGAGCGTTC
TATTAGTTAGAATAAATGATGTATTACTAAAAATTTATTACAGTATCTAATAATACTATAAAGGCATTACCGTCATTTCT
TATGGGAGGTCATCGTGCACCGGCCAGACCGGACACAGCTTCGGTGCCTTAAAGGCACCTACCTTTGGGTCACTGACATG
TGGGCCAGCCACCTGTTCGGCCCACATGTCATAGACATAAAGGTAGGTGCCTTCGTCCGGCCAGACCCTATATACAGGCT
ATCCTTGTATCATCGCT--------------AAGCCCAGAGTTTATCTACTTATCTTGTTAC------------------
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---------------------------------------------------------------------------ATTTC
AGTTCTTTAATTTCCAGTAAATTGTCT---------------------CCTGTTCATCTCCTCTAATCCTCGTCAAGATC
AGATATTTGTCCATCTCTCCTCGTCAGATCCATCGGGATCCTGACAGTCGTGTGTACAGGTGCCCCGCCATGAAGCGCCC
TTCCGGTTCCTCGGCTGGTCGTGATCCCCGGGCTCCTCCTCCCGCTTCTGGCGGTGGCGGCTCCAGCGAGCCAGCCAAGA
AGCGGCAGCGGACCTCGAGCTCGAGCCAGGCCGAGGCATCCTCCTCGTCCTCACAGCCTCCACCGGCGCCGCCGGGGGAC
GCGAGAGCGGTGCCGGATCTGGGGGAGGACGTGATGTTCGAGGTGCTGCGGCGGGCGGAGGCGCGGACGCTGGCCGCCGC
GGCGTGCGTGAGCCGGGGCTGGCGGGTCCTCGCGCAGGACGAGCGGCTGTGGGAGGCGCCGTGCGTGAGGG-------AG
TGGACCGGCCTCGGCTTCTCGGAACAGCTGCTCCGCGCCGTCGTGCTCCCGCTCGGCGGCTTCCGCCGCCTGCACGCCGT
CTCCGTCCAGGCCCGACGGCGGTTCGGCGTTGGCTGC---GGGAATTGGCACGGCGTGCGGACGCCGGGACAGGGGAGGA
GGAGGGGGGTGCCGTGGACCGAGCACGAGCACAGGTGAGTATAGTGTTTT---------------TCTGATCTCACTGTC
TTGTGAGAGTGATTGCTCTGCTCCATCCATGTCATGCACAAGACTAGTTAGTGATATAAATTTTCTT-TCTTGAATTCAC
CATCAATCAATAGGATTTACATCATCAGATGGCTTTGCTAGCATTTAAAACATGG-AAATTGGAAGAATAATTCAACCAT
--GGAAGAACTGCTCTCTGAAACTGAATAAATTGTGTATGTTCACTAGGAATTGACGAGACAGTCATGTAGCATGATGTT
TGATGGC-------------------------------------------------------------------------
--------------CATCCAGCAAGAATTCATGATCCATACTGATACTG-------------------------------
----------------GTTGCTGAAGCTGATCATGCCTTGTTC----TTTGGCCAGCTTGTTCCTCTTAGGCCTGAAGGA
GTACGGAAGAGGGGATTGGAGGAACATATCACGCAACTTCGTGCAGACGAGGACGCCGACGCAGGTGGCCAGCCACGCGC
AGAAGTACTTTATCAGGCTTGGCTCAGGGGTGGCA---------AGGAGGTCGAGCATCCACGACATCACCACAGTTCAC
CTGACCGACGACCAGCCTCCCTCGCCATCCCAGTGATTTATGATCAACCAGTCCAGCGCACCGGCTC--AGCTCGGCAAC
GGGGCACTTCTCGCTGCCAGCCGACACCAAG-AACACGGCGCCGCGAGCGCGCCCTTCAGTTCGCCGAACTGGGCTCTCG
GGATGCCGAACTACGGCA-GGGTTTGCAAGATCAAGGCCTGCAGTGTGGTCC---------TCTACATGATCAGCTGGCC
GCAAACCGGAGT-------ACGCTGTATTAGAAGATGCAAGCAC-----------------------ATCAGATGTCTAG
TGTAATATGGCCCTTGCTGTAGTTTCACTGCCTGTATTATTATTG----AAGTAATTGATCATGGGGATTTTCCAGAACA
TAGCAGAGAGAGGAGGT------------------------------------------------------------GTG
CTGGTGAGTGGTGATGCTTGGTAGTAGTCCATAATTGTTGGTGTTGATACTGA-GAATGTCAGGGGAAAAGGATGCAGGG
GATGTCTAGAACTTGATGCTGTAGTATGTTCGGACAGACAGGGAATGCTAGTGCTCAGTACTGGTCATGCACATTGTCAA
GTGACTTG--TTTTCAATCTTCATGGATCCTGCTTTCTGGTCAGTTCATGTTATTGGAAACCTTACTCATGCAGCATCTC
ACACATACTTATCCACATCTAT-------CATTCATTCATTCAAGCATATATA----ACCTGTCTCG-------------
----------GTGCTTGCGCCGTCCGT-TGTTTGCGAGTGTAATTTTTTCGGATAAACCAAAATGAGTTTGCAGTGAGTA
ATCCAGCATTTACCTGCCTTGCTCATCTGGTTAACTTTTTCCTTGATTACAGCTCTAGTTATTTCCAACCTTGTGGATTG
ACCTTTGCATTGCTTGTGTACAATTAACTCCTTTAAACAAA-TAGGAAATCCTTCTCTTGTATACTCCCTCTGTTCCTTA
ATATAAGACCTTTTAG-TTTTTTTTATTCGTATGTATCTAGACATTTTTTGGTATGTATGTTCACTCATTTTAGTATGTA
TGTAGTCAATATTTTGGAATAGCTAAAAGGTCTTATATTAAGGAATCGAGGGAGTAGATCTCTACTACTAATGATGATGA
TGATGATGGTGGTGGTGGTGGATTCACCAAGCAATGGAATTAGAAATGAGTCAGACTTTTCTGCCTCTCATGCTTTGGCA
TCTCATGCTTTCCATCAACTTTTGCAAAATCTTTCCGTCTCTCCATTTTGGCCCTGTTCTTCTTGCCCTCATTGAGAAA
>chr3D_1
TTCGAAAAGGCATCCAAGTGTTTTTTTTTAATTTCATACCATAAGTATTGTACTGTTTTTGTTCTATTTCATCTAGAAAG
TATATGCTTGGTTATCATAATGAGAAAGTGAGCAGATGAATTCGAAGAATCCCAAAAGCGAGCCATTGACAAAAAAGTGA
GTATAAGTGCAGGTTATGATAGAACTTCTCGCGAACTAGCTCTACCAAGTAGCAATTGCTGAAGAACAACCCAATACTTC
TGTAACTAGTTGTATATACACAGAGGTCCCGGTCTGTCATCTTGCACCACGACCCCTACCGTGTCAGGGCCGGCCCTGGT
CATTGCCATCGTCGCCACCAATAACAAAAATGATGACCAACTGACGAGGCAACTAATAGAGCGTTGGAGCCTTCTTGAGA
AGGCAACACACTTGTGATCCAAAGAGATAGATAGATAGATAGATAGATAGATAGATAGAGTGAGTGAGTGAGTGAGTGAG
GGAGGGAGGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGGCAGGCAGAGAGGAAGGGACGAAAGAAGGGAAGGGAGATTTTGCAGGTAAACACTGATAGGA
CAACCGTGTTCTGAAATATAAATAAGATTTGGTGGTGAAGAAGTGAACCATTGTGTTTGTTCCCAATTTGTCAGACATCA
TTGTATTTGCTTTCAATCTGTCAGACAC-ATAACATTCATGTTGAATGTGTCGTGGGATTTTTTTTTGATAAATATGTGT
TTTAGCTCTTGATATTTTCATATGATTGTAAATTTATCCATTTACATATTACCCCGAGAAGTATTTTTAGTTGGGAGATG
GAAGTAAGGAAGAAAAGAAAAGTGTTTTAACGATAAAAAAGAAGCCGTCGATGCAGTCAGTTGCAAGCGCACGAGCATTC
TACTAGTTAGAAT-AATGGTGTATTACTAAGAATTTATTATC-----------TAATATAAGGGCGTTACCGTCATTTGT
CATGGAATCATGTA------------------------------------------------------------------
--------------------------------------------------------CCGGCCAGACCCTATATAGAGGCT
ATCCTTGTATCGTTGTTAAGCTCAGAATTCAAAGCCCAAAGTTTATCTACTTATCTTGTTGCATTTCAGTTCTTTAATTT
CCAGTAATTTATCCTGTTCATCTCCTCTATCCTCGTAAAGATCAGATTTTTGTCCTCTCCTCGTCGACGCGGGAGCTGCG
ACGACGCTCCAGATCCGGAGCTATCGCTGGTCTCCACCTTGGACCGCTCTAGCGCAATGCGGAGGGCCATCTCCTCCTCG
TAGTCGAGCTCCGAGCCGGAGTTGGTCATCATAGTGGATGTGATCGGAATCAGGGAGGGGGAGGAGTGGATGATGCGAGA
GAGAGTGAGCTAGGGTTTGGAGCGAGGCGCCCGAATTGGGATTTTCGTGGGACAGTTGCGGGGTCGGTGGTGGGTCGGGC
CTGTCAAGCGGACGCGCTCGAGCATGCCCGGATCACCCCATATCCATCCTGTATTTGGGTTGGATATGAGGGGTACCGGT
CAGCCCGGCCGTTTATCCGCAGTTGGAGAGTTTCGGTTGGATCGATTTTTTTTTTTACCGGTAAGTGACCAGATGGTTTG
CCCGAGCGTCTGAGACGGATACGATTGGTCCGGCTTTAGATGCTCTGAGAGAAACAAAACGAGCCATGGAGAACAGACGC
GAGAGGATAAGGTTAGCTGAGATGTGTACTATATTTTTTAAGAAGAGTGGTGCTGGCTGCATCCTACGATCACAACCAAT
GTCCCCATCGCACGTTTCTCGTGTGACCGGCGTAAAACATTTCCCATTTCTCATGGGATGTCATCGGCCAGACTCTATAT
AAAGGTCTCCCATCCTTGTATCATTGGTAAGCTAAGAAATCAAAGCCAAAGTTTATCTACTTATCTTGTTGTAGTATTTC
AGTTCTTTAATTTCCAGTAAATTGTCTTGTTATCATACTACAATTCATCCTGGTCGTCTCCTCT-ATCCTCGTCAAGATC
AGATTTTTGTCCATCTCTCCTCGTCAGATCCATCGGGATCCTGACAGTCGTGTGTACAGGTGCCCCGCCATGAAGTGCCC
TTCCGATTCCTCGGCTGGTCGTGATCCCTGGGCTCCTCCTCCCGCTTCTGGCGGTGGCGGCTCCAGCGAGCCAGCCAAGA
AGCGGCAGCGGACCTCGAGCTCGAGCCAGGCTGAGGCATCCTCCTCGTCCTCACAGCCTCCGCCGCAGCAGCCGGGGGAC
GCGAGAGAGGTGCCGGATCTGGGGGAGGACGTGATGTTCGAGGTGCTGCGGCGGGTGGAGCCGCGGACGCTGGCTGCCGC
GGCGTGCGTCAGCCAGGGCTGGCGGGTCCTCGCGCAGGACGAGAGGCTGTGGGAGGCGCCGTGCGTGAGGG-------AG
TGGACCGGCCTCGGCTTCTCGGAACAGCTGCTCCGCGCCGTCGTGCTCCCGTTCGGCGGCTTCCGCCGCCTGCACGCCGT
CTCCATCCAGGCCCGACGGCGGTTCGGCGTTGGCTGC---GGGAACTGGCACGGCGTGCGGACGCCGGAACGGGGGAGGA
GGAGGGGGGTGCCGTGGACCGAGCACGAGCACAGGTGAGTATAGTGTTCT---------------TCTGATCTCACTGTC
TTGTGAGAGTGATTGCTCTGCTCTATCTATGTCATGCACAAGACTAGTTAGTGACATAAATTTTCTT-TCTTGAATTCAC
CATCAATCAATAGGATTTACATCATCAGATGGCTTTGCTAGCATTTAAAACTTGGCAAATTGGAAGAATAATTCAACCAT
--GGAAGAACTGCTATCTGAAACTGAATAAATTGTGTATGCTCAGTAGGAATTGACGAGACAGTCATGTAGCATGATGTT
TGATGGC-------------------------------------------------------------------------
--------------CATGCAGCAAGAATTCATGATGCAT------AC-AC------------------------------
--------------TAGTTGCTGAAGCTGATCATATGCTCTGTTC-TTTTGGCCAGGTTGTTCCTCTTAGGCCTGAAGAA
GTACGGAAGAGGGGATTGGAGGAACATATCACGCAACTTCGTGCAGACGAGGACGCCGACGCAGGTGGCCAGCCACGCCC
AGAAGTACTTTATCAGGCTCAGCTCAGGGGTGGCA---------AGGAGGTCGAGCATCCACGACATCACCACAGTTCAC
CTGACCGACGACCAGCCTCCCGCGCCGTCCCAGTGATTGATGATCAACCAGTCCAGCGCACCGGCTC--AGCGCGGCAAC
GGGGCAG---------------------------CACGGCGGGGCGAGCACACCCTTCAGTTCGCCGAGCCGGTCGCTCG
GGATGCCGAACTATGGCA-GGGTTTGCAAGATCAAGGCCTGCAGTGTGGTCC---------TCTACATGATCAGCTGGCC
GCGAACCGGAGTAC-------GCTGTATTAGAAGATGCAAGCGC-----------------------ATCAGATGTCTAG
TGTAATATGGCCCTTGCTGTAGCTTCACTGCCTGTATTATTATTCAAGTAAGTAATTGATTATGGGGATTTTTCAGAACA
TAGCAGAGAGAGGAGGT------------------------------------------------------------ATG
C-------TGGTGATGCTTGGTAGTAGTGCATAAGTGCTGGTGTTGATACTGA-GAATGTCAGGGGAAAAGGATGCAGAT
TA-----------------------------------------------------------TGATCATGCACATTGTCAA
GTGACTTG--TTTTCAATCTTCATGGATCCTGCTTTCTGGTCAG---------------------CTCATGCAGCATCTC
ACACATACTTATCCACATCTATGATCTATCATTCATTCATTCAAGCATATATATACAACCTGTCTCG-------------
----------GTGCTTGCGCCGTCCGTATGTTTGCGAGTGTAATTTTTCCGGACAAACCAAAATGAGTTTGGAGTGACTC
ATCCAGCATTTACTTGCCTTGCCCATCTGGTCAACTTTTTCCTTGATTACAGCTCTAATTATTTCCAACCTTGTAGATTG
ACCTTTGCATTGCTTGTGTGCAATTAAGTCCTTTAAACAAA-TAGAAAATCCTTCTCTTGTATACTCCCTCCGTTCCTTA
ATATAAGACCTTTTAGCTTTTTCTTATTCGTATGTGTCCAGATATATTTTAGTATGTATGTTCACTCATTTTAGTATGTA
TGTAGTCAATATTTTGAAATAGCTAAAAGGTCTTATATTAAGGA------------------------------------
------------TGGTGGTGGATCCACCAAGCAATGGAATTAGAAATGAGTCAGACTTGCACTA-------GCTTTGGCA
TCTCATGCTTTCCATCAACTTTTGCAAAATCTTTCCCTCTCTCCATTTTGGC---------------------------
>chr3A_1050
AATTTA--------------------------------------------------------------------------
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--------------------------T---------------------CCTCTTCATCA--TCT-ATCCTCGTCAAGATC
AGATTTTTGTCCATCTCTCCTCGTCAGATCCATCGTGATCCTGACAGTCGTGTGTACAGGCGCCCCACCATGAAGTGCCC
TTCCGATTCCTCGGCTGGCCGTGATCCCTGGGCTCCTCCTCCGGCTTCTGGCGGTGGCGGCTCCAGCGAGCCAGCCAAGA
AGCGGCAGCGGACCTCGAGCTCGAGCCAGGCCGAGGCATCCTC---GTCCTCACAGCCTCCACCGGCGCCGCCGGGGGAC
GCGAGAGAGGTGCCGGATCTGGGGGAGGACACGATGTTCGAGGTGCTGCGGCGGGCGGAGCCGCGGACGCTGGCCGCCGC
GGCGTGCGTGAGCCGGGGCTGGCGGGTCCTCGCGCAGGACGAGCGGCTGTGGGAGGCACCGTGCGTGAGGGAGTGGACAG
TGGACCGACCTCGGCTTCTCGGAACAGCTGCTCCGCGCCGTCGTGCTCTCTTTCGGCGGCTTCCGCCGCCTGCACGCCAT
CTCCATCCAGGCCCGACGGCGGTTCGGCGTTGGCTGC---GGGAACTGGCACGGCGTGCGGACGCCGGGACAGGGGAGGA
GGAGGGGGGTGCCGTGGACCGACGACGAGCACAGGTGAGTATAGTGTTCT---------------TCTGATCTCACTG--
--------------------CTCCATCTATGTCATGCACAAGACTAACTAGTCATATAAATTTTCTT-TCTTGAATTCAC
CATCAATCAATAGGATTTACATCATC--------------------------------------AGAATAATTCAACCAT
--GGAAGAACTGCTATCTGAAACTGAATAAA------TTGTTCACTAGGAA-TTGATGA---------------------
-GATGGC-------------------------------------------------------------------------
--------------TATGCAGTAAGAATTCATGATCCAT------ACTG-------------------------------
----------------GTTGTTGAAGCTGATCATGCCTTGTTC----TTTGGCCAGGTTGTTTCTCTTAGGCCTGAAGAC
GTACGGAAAAGGGGATTGGAGGAAAATATCACGCAACTTCGTGCGGACGAGGACGCCGACGCAGGTGGCCAGCCACGCTC
AGAAGTACTTTATCAGGCTCAGCTCAGGGACGGCA---------AGGAGGTCGAGCATCCACGACATCACCACAGTTCAC
CTGACCGACGACCAGCCTCCCTCGCCGTCCCAGTGATTGATGATCAACCAGTCCAGCGCACCGGCTC--AGCACGGCAAC
GGGGCAGTTCTCGCTGCCAGCCGACACCAAGCAGCACGGCGCGTCGAGCGCGCCCTTCAGTTCGCCGAACCGGGCTCTCG
GGATGCCGAACTACGGCA-GGGTTTGCAAGATCAAGGCCTGCAGTGTGGTTCTCTACAATGTCTACATGATCAGCTGGCC
GCGAACCGGAGTACCGAGTACGCTGTATTAGAAGATGCAAGCGC-----------------------ATCAGATGTCTAG
TGTAATATGGCCCTGGCTGTAGTTTCACTGCCTGTATTATTACTG----AAGTAATTGATTATGGGGATTTTTCATAAGA
TAGCAGAGAGAGTAGGT------------------------------------------------------------ATG
CTGGTGAGTGGTGATGCTTGGTAGTAGTCCACAAGTGTTGGTGTTGATACTGA-GAATGTAAGGGGAAAA---------G
GATGTCTAGAACTTGATGCTGTAGTATCTTGAGACACACAGGGAATACTAGTGCTCAGTACTGATGATGCACATTGTCAA
GTGACTTG--TTTTCAATCTTCATGGATCCTGCTTTCTGGTCAGCTCATGTTATGGGAAACCTTACTCATGCAGCATCTC
ACACATACTTATCCACATCTATGATCTATCATTCATTC-----------------------ATTCAAGCTTGCGCCGTTT
C------------------CCGTCCGTATGTTTGCGAGTGTAATTTTTCCGGATAAACCAAAATGAGTTTGGAGTGAGTC
ATCCAGCATTTACTTGCCTTGTTCATTTGGTTAAC---------------------------------------------
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>chr3A_1050
AATTTA--------------------------------------------------------------------------
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--------------------------T---------------------CCTCTTCATTATCTCT-ATCCTCGTCAAGATC
AGATTTTTGTCCATCTCTCCTCGTCAGATCCATCGTGATCCTGACAGTCGTGTGTACAGGCGCCCCGCCATGAAGTGCCC
TTCCGATTCCTCGGCTGGCCGTGATCCCTGCGCTCCTCCTCCCGCTTCTGCCGGTGGCGGCTCCAGCGAGCCAGCCAAGA
AGCGGCAGCGGACCTCGAGCTCGAGCCAGGCTGAGGCATCCTC---GTCCTCACAGCCTCCACCACAGCAGCCGGGGGAC
GCGAGAGAGGTGCCGGGTCTGGGGGACGACGTGATATGCGAGGTGCTGCGGCGGGTGGAGGCGCGAACGCTGGCCGCCGC
GGCGTGCGTGAGCCGGGGCTGGCGGACCCTCGCGCAGGACGAGCGGCTGTGGGAGGCGCCGTGCGTGAGGG-------AG
TGGGCCGGCCTCGGCTTCTCGGAACAGCTGCTCCGCGACGTCGTGCTCTCTTTCGGCGGCTTCCGCCGCCTGCACGCCGT
CTCCATCCGGGCCCGACGGCGGTTCGGCGTTGGCTGC---GGGAACTGGCACGGCGTGCGGACGCCGGGACAGGGGAGGA
GGAGGGGGGCTCCGTGGACCGACGACGAGCACAGGTGAGCACAGTGTTCT---------------TCTGATCTCACTGTC
TTGTGAGAGTGATTGCTCTGCTCCATCTATGTCATGCACACGACTAGTTAGTGATATAAATTTTCTT-GCTTGAATTCAC
CATCAATCAATAGGATTTACATCATCAGA--------------------------------------ATAATTCAACCAT
--GGAAGAACTGCTATACGAAACTGAATAAA------TTGTTCACTAGGAA-TTGATGA---------------------
-GATGTC-------------------------------------------------------------------------
--------------CATGCAGTAAGAATTCATGATCCAT------ACTG-------------------------------
----------------GTTGTTGAAGCTGATCATGCCTTGTTC----TTTGGCCAGGTTGTTCCTCTTAGGCCTGAAGAC
GTACGGAAAAGGGGATTGGAGGAACATATCACGCAACTTCGTGCGGACGAGGACGCCGACGCAGGTGGCCAGCCACGCGC
AGAAGTACTTTATCAGGCTCAGCTCAGGGGCGGCA---------AGGAGGTCGAGCATCCACGACATCACCACAGTTCAC
CTGACAGACGACCAGCCTCCCTCGCCGTCCCAGTGATTGATGATCAACCAGTCCAGCGCACCGGCTC--AGCGCGGCAAC
GGGGCAGTTCTCGCTGCCAGCCGACACCAAGCAGCATGGCGCGGCGAGCGCGCCCTTCAGTTTGCCGAACCGAGCTCTCG
GGATGCCGAACTACGGCA-GGGTTTGCAAGATCAAGGCCTGCAGTGTGGTCC---------TCTACATGATCAGCTGGCC
GCGAACCGGAGTACCGAGTACGCTGTATTAGAAGATGCAAGCGC-----------------------ATCAGATGTCTAG
TGTAATATGGCCCTTGCTGTAGTTTCACTGCCTGTATTATTATTCAAGTAAGTAATTGATTATGGGGATTTTTCAGAACA
TAGCAGAGAGAGTAGGT------------------------------------------------------------ATG
CTGGTGAGTGGTGATGCTTGGTAGTAGTCCATAATTTCTGGTGTGGATACTGA-GAGTGTAA-GGGAAAA---------G
GATGTCTAGAACTTGATGCTGTAGTATCTTGAGACAGACAGGGAATACTAGTGCTCAGTACTGATCATGTACATTGTCAA
GTGGACTTAATTTTCAATCTTCATGGATCCTGCTTTCTGGTCAGCTCATGTTATTGGAAACCTTACTCATGCAGCATCTC
ACACATACCTATCCACATCTATGATCTATCATTCATCC-----------------------ATTCAAGCATATATATACA
GCTTGTCTTAGTGCTTGCGCCGTCTGTATGTTTGCGAGTGTAATTTTTCCAGATAAACCAAAATGAGTTTGGAGTGAGTC
ATCCAGCATTTACCTGCCTTGCTCATCTGGTCAACTTTTCCCTTGATTACAGCTCTAATTATTTCCAGCCTTGTGGATTG
ACCTTTGCATTGCTTGTGTGCAATTAAGTCCTTTAAACAAA-TAGGAAATCCTTCTCTTGTATA----------------
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--------------------------------------------------------GATCTATACTACTAATACTGATGA
TGATGATGATGACGC---TGGATCCACCGAACAATGGAATTGGAAATGAGTCAGACTTGCACTA-------GCTTTGGCA
TCTCATGCTTTCCATCAACTTTTCCAAAAACTTTCGCTCTGTCCTTTTTGGCTCTCTTCTTC-----------------
>chr3B_1582
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-------------------CGGTTCGGCGGCTGCGGCGGCGGGAGGCGGCACGGCGGCCGCACGCCGGAGCAGGAGAGGA
AGAAGGGGGTGCCGTGGACCGAGGACGAGCACAAGTGAGCACTACTACCACCACGATTCTTCTTCTCTGATCTCAATGAC
TTGTGAGAGTGATTGCTCTGCTCCATCCATGTCATGCACAAGACTAGCTAGTGATATAAATTTTCTTCTCTTGAATTCAC
CATCAATCAACAGGCTTTACATCATCAGATGGCTATGCCAGCATTTAAAACATGCCAAATTGGAAGAATAATTCAACCAT
ATGGAAGAACTGTTTTCTGAAAGTGAATTACTTGTCTTTGTTCACTAGGAATTTGATGA---------------------
-GACAGTCATATGTAGCATGATGTTTGATGCTCATGTAGCCTGATGTAGAGCAAGAGTTCATTATGCTCTGTTCTTTGGT
GTCATGTAGCCTGATGTGAAGCAATAGTGCATGATCAAT------ACTAC------------------------------
--------------TAGTTGCTGAACCTGATCATATGCTCTGTTCTTG-TGGCCAGGTTGTTCCTCCTAGGCCTGAAGAA
GTACGGCAAAGGGGACTGGAGGAACATTTCGCGCAACTTCGTGCAGACGAGGACGCCGACGCAGGTGGCCAGCCACGCGC
AGAAGTACTTCATCAGGCTCAGCTCCGGCGGCGGCAAGGACAAGAGGCGGTCGAGCATCCACGACATCACCACGGTGCAC
CTG---GACGACCAGCCCCCCTCGCCGTCCCAGTCATCCATGATCACCCAGTCCAGCGCACCGGCTCCGAGCTCGGCAAC
GGGGCAGTTCTCGCTGCCGGCCGACACCAAGCAGCACGGCGGAGCAAATGCGCCATACAATTCGCCG-------------
-----CCGAGCTACGGCATGGGTTTGCAAGATCAAGGCATCCAGTGTGGCCC---------TCTGCATGATCAGCTGGCG
GCAAACCGGAGCAT-------GTTGTATTAGAAGATGCAACCTTTCGATCCATTTCGACGACA-CCGATCAGATGTCTAG
TGTAATATGGCCCTTGCTGTAGCCTCACTGCCTGTATTATTATTGAAGTAAGTAATTGATTATGGGGATTTTTCAGAACA
TAGCAGAGAGAGAGAGAGAGAG--------------------------------------------------GTATGATG
CTGGTGATGCT------TTGGTAGTAGTCCATAATTTCTGGTGTGGATACTGAAGAATGTAA-GGGAGAA---------G
AATGGCAAGAACTTGATGCTGTAGTATCTTGAGACAGACAGGGAATACTAGTGCTCAGTACTGATCATGTACATTGTCAA
GTGGACTTAATTTTCAATCTTCATGGATCCTGCTTTCTGGTCAGCTCATGTTATTGGAAACCCTACTCATGCAGCATCTC
ACACATACTTATCCACATCTATGATCTATCATTCATCC-----------------------ATCTCG-------------
----------GTGCTTGCGCCGTCCG-ATGTTTGCAAGTGTAATTTTTTCGGATAAACCAAAATGAGTTTGCAGTGAGTC
ATCCAGCATTTACCTGCCTTGCTCATCTGGTCAACTTTTTGCTTGATTGCATCTCCATTTTTTTCTAACCTTGTGGATTG
ACCTTTGCATTGTTAGTGTGCAATTAAGTCCTTTAAA-AAA-TAGGAAGTTATTCTCTTCTATA----------------
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>chr3D_1690
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-----------------------------------------------------------------TCTGATCTCAGTGAC
TTGTGAGAGTGATTGCTCTGCTCCATCTA-------------ATTAGTTAGTGATATGAATTTCCTT-TCTTGAATTCAC
CATCAACCAACAGGCTTTACATCATCAGATGGCTCTGCCAGCATTTAAAACATGCCAAACTGGAAGAATAATTCAACCAT
--GGAAGAACTGCTATCTGACAGTGAATTACTTGTCTTTGTTCACTAGGAA-TTGATGA---------------------
-GACAGTCATATGTAGCATGATGTTCGATG--------------------------------------------------
GTCATGTAGCCTGATGTAGAGCAAGAATTCATGATCCAT------ATTACTAGTTGATGTCATGTAGCCTGATGTGCATG
ATCAATATTACTAGTAGTTGCTGAAGCTGATCATGTGCTCTGTTCTTC-TGGCCAGGTTGTTCCTCCTAGGCCTGAAGAA
GTACGGCAAAGGGGACTGGAGGAACATTTCGCGCAACTTCGTGCAGACGAGGACGCCGACGCAGGTGGCCAGCCACGCGC
AGAAGTACTTCATCAGGCTCAGCTCCGGCGGCGGCAAGGACAAGAGGCGGTCGAGCATCCACGACATCACCACGGTGCAC
CTC---GACGACCAGCCCCCCTCGCCGTCCCAGTCATCCATGATCACCCAGTCCAGCGCACCGGCTCCGAGCGCGACAAC
AGGGCAGTTCTCTCTGCCAGCTGACACCAAGCAACATGGCGGAGCGAATGCGCCATACAATTCGCCG-------------
-----CCGAGCTACGGCATGGGTTTGCAAGATCAAGGCCTGCAGTGTGGCCC---------TCTGCATGATCAGCTGGCC
GCGAACCGGAGCAT-------GCTGTATTAGAAGATGCAACCGTTCGATCCATTTCGACGCCATCCGATCAGATGTCTAG
TGTAATATGGCCCTTGCTGTAGCTTCACTGCCTGTATTATTATTGAAGTAAGTAATTGATTATGGGGATTTTTCAGAACA
TAGCAGAGAGAGAGAGAGAGAGAGA------------------------GAGAGAGAGAGAGAGAGAGAGGGGTATGATG
CTGGTGATGCT------TTGGTAGTAGTCCATAATTTCTGGTGTGGATACTGA-GAATGTAA-GGGAAGA---------G
AATGGCAAGAACTTGATGCTGTAGTATCTTGAGACAGACAGGGAATACTAGTGCTCAGTACTGATCATGTACATTGTCAA
GTGGACTTAATTTTCAATCTTCATGAATCCTGCTTTCTGGTCAGCTCATGTTATTGGAAACCTTACTCATGCAGCATCTC
ACACATACTTATCAACATCTATCAT---TCATTTATTTATTCAAGCATATAT----AACCTATCTCG-------------
----------GTGCTTGCGCCGTCCG-ATGTTTAGGAGTGTAATTTTTTTGGATAAGCCAAAATGAGTTTGCAGTGAGTC
ATCCAGCATTTACCTGC---------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr3A_1963
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-----------------------------CATGATCAAT------ACTGC------------------------------
--------------TAGTTGCTGAATCTGATCATATGCTCTGTTCTTTTTGGCCAGGTTGTTCCTCCTAGGCCTGAAGAA
GTACGGCAAAGGGGACTGGAGGAACATTTCGCGCAACTTCGTGCAGACGAGGACGCCGACGCAGGTGGCCAGCCACGCGC
AGAAGTACTTCATCAGGCTCAGCTCCGGTGGCGGCAAGGACAAGAGGAGGTCGAGCATCCACGACATCACCACGGTGCAC
CTG---GACGACCAGCCCCCCTCGCCGTCCCAGTCATCGATGATCACCCAGTCCAGCGCGCCGGCACCGAGCCCAGCAAC
GGGGCAGTACTCGCTGCCGGCCGACACCAAGCAGCACGGCGGAGCGAATGCGCCATACAATTCGCCG-------------
-----CCGAGCTACGGCATGGGTTTGCAAGATCAAGGCCTGCAGTGTGGCCC---------TCTGCATGATCAGCTGGCC
GCGAACCGGAGTAT-------GCTGTATTAGAAGATGCAGCCGTTCGATCCATTCCGACGCCA-CCGGTCAGATGTCTAG
TGTAATATGGCCCTTGCTGTAGCTTCACTGCCTGTATTATTATTCAAGTAAGTAATTGATTATGGGGATTTTTCAGAACA
TAGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTATGATG
CTGGTGATGCT------TTGGTAGTAGTCCATAATTTCTGGTGTGGATACTGA-GAGTGTAA-GGGAAAA---------G
GATGTCTAGAACTTGATGCTGTAGTATCTTGAGACAGACAGGGAATACTAGTGCTCAGTACTGATCATGTACATTGTCAA
GTGGACTTAATTTTCAATCTTCATGGATCCTGCTTTCTGGTCAGCTCATGTTATTGGAAACCTTACTCAGGCAGCATCTC
ACACATACTTATCCACATCCATCTT---TCATTCATCC-----------------------ATCTCG-------------
----------GTGCTTGCGCCGTCCG-ATGTTTGCAAGTGTAATTTTTCCGGATAAACCAAAATGAGTTTGCAGTGAGTC
ATCCAGCATTTACCTGCCTTGCTCATCTGGTCATTTTTTTCCTTGATTGCATCTCCATTTTTTTCTAACCTTGTGGATTG
ACCTTTGCATTGTTTGTGTGCAATTAAGTCCTTTAATTTTTTTAGGAAATTCTTCCCTTGTATA----------------
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-------------------------------------------------------------------------------
>SNPs
----------------------------SSSS--------------------S--------S------------S-----
----S-S----------S-----S--S---S-S----------S---------------S---S----------------
---------S-----------S---------S---------------------------S--------------------
-------------S------------------S-------------S--S-S------S-------------S-----SS
---S-------------S---------------S--------S-----S---------------------------S---
S------------------S-------------S--S-------------------------------------------
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------------S----------S-----------S--S-S-SSS--SSS-----------------S-S---S---S--
----S----S--------------S---S-----S--------------------SS-SSS----SS----------SS-
---------------S---------------------------------S-S---S-----------------------S
----S-----------SS----S--S-----S--------------------------------------------S---
--S----------S----S-----------S---------SSSSSSSSSSSSS--S-----S---S------------S-
S----S-SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------S-----
-----------S-S-S----------------------S---------------------S-------------------
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----------------------------------------------------------------S---------------
----S----------------------------------------------------------------------S----
-----S----------------------S---------------------------------------------------
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-------S------------------------------------------------------------------------
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---------------------------------------------------S----------------------------
----S----------------------------------------S----------------------------------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S---------------------SSSSSS-----------------------------------
--------------------------------------------------------S---------------------S-
--------------------------------------------------------------------------------
-------------------SS-----------------------------------------------------------
--------------------------S-----------S-----------------------------------------
------S-----------------------------------S---------------------------S---------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
------------------------------------------------------------S-----------S-------
-----------------------------------------------------------------------------S--
------------------------------------------------------------------------------S-
---------------------------S--SS--------------S----------------S----------------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
---------------------------------------------------------S----------------------
-------------------S-------S-------------------------------------------S--------
----------------------S------------S--S---S--S----S-----------------------------
----------------S---------------------------SSSSSSSSSSSS-----S----------SS------
--------S--S-----------S----------------------------------SSSSSSSSSSSSS---------
------------------------------------S---------------S--S------SSSSSSSSSSSSSSSSS
>forward_923
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-----------------------GAGATTTGGTGGCGAGGGAA-------------------------------------
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>reverse_3519
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------------------------------------------------------------------------------GA
GTACGGAAGAGGGGATTGG-------------------------------------------------------------
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>forward_1332
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--------------------------------ACACAGCTTCGGTGCCTTAA----------------------------
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>reverse_4271
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------------------------------CGGACAGACAGGGAATGCTA------------------------------
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-------------------------------------------------------------------------------
