>input_sequence_52460
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-----------------------------------------------------------------CTATAAATGCCCAAT
TTTTCGGAGGCAACCCTCTGTGCAACCCAGCTGACCATCGATCCATCTCTCGAGATTCCAGAGACTCCACTGCAATCCAG
C-----------TCCCCATTGACCCGTCTCCCTGGAGACTCCACGACGCGCGAATGGCGCTGCCCTCCGAGGAGGTGGTG
GCCATACTCGCGCCGATCATCGTGTACTGGGTCGCCGCCGGCGTGTACACGGTGCTCGGCCGTGTACTGGCTGACCACAG
GCTCCACTCGAGGGAGGAGGAGGAGGTCAGGAACCTCGTCCCCAAGCGTGTCGTGGTCCGCACCGTCCTCCTCCAGCACG
TTCTCCAGGCGGCCATAGCCTTCGCCGTCTTCAATGTAAGCGCAGGTGTACCACATTCATCGATGCTAGCTACTCAGGTG
GCCGTGCAACTGAACTCAAGTTATT---ACTGGACGCAGGTGAAGCGAGAAGATCGCCGGGCTGCCGACGCCGGCACCGG
CGCCGCCACT---------CCCGCCGTGGCCGTCGTCTGCTGCCAGTTCATGGTCGCCATGGTGGTCCTCGACGCGTGGC
AGTACGGGTGGCACCGCCTGATGCACAGCAGCGGCCTGCTGTACCGCCATGTCCACTCCTGGCACCACCGGCTGGTGGCG
CCGTACGCCTACGGCGCCCAGTACAACCACCCGCTGGAGGGCCTGATACTGGACACGGCCGGCGGCGCGCTGGCGCTGGC
CGTGACGGGGATGGCGCCCCTGACGGCCGCCGCCTTCTTCTCGTTCGCGACTCTCAAGGCCGTCGACGACCACTCCGGCG
TGCTTGTCCCGGGCAACCCGCTGCATCTCCTGTTCCGCAACAACACGGCCTACCACGACGTCCACCACCAGGTTCGTGGT
GGCCGCTGCAACTACGCGCAGCTGTTCTTTGTGGCGTGGGACAAGCTGATGGGCACGTACGTCCCTTACGAGGTCGTCAG
AGCTCCGCACGGCGGACTGGAGGCCGTGCCGTTG---AAGAAGAAGTTGAAGACCTGACGGACGGTGCCAGGACATGATC
TTCGTCAGGGGAGCTGCGCGCGTCCCTTCGCTGGAGCGTGAGTCAACCACACCACTAGGCATGCACCTTTTCAGTAGCGA
GGATCATGTCACCAACTCACCATGTCAAGTCTGTCAACGTCCGTATGATAGTAAGG------GCTCGTGAATCATGATCC
GGACCGGTTTGTAACAACGAATACTT-------------------------------------TGCCTGGCGTCGATCCC
GACCGTGTGTACTAAAATATGTTTGTTATGGCAGCCAATTAGTGTTAATAACGAAATTCAGAAATTGACGTGAGG---AT
CCCGAACGACGGGATTTGCCATGATAAATCGAACATTTTTTATAACAAATTTAGTTGATGTGAGGATGACAAGTTTAGTT
GACAAGCACGGCAATTCCCTGGCA--------------------------------------------------------
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-----------------------------------
>chr6A_1_TraesCS6A01G095000
TAGAGGCTCGCTGACGAGCTGCTCGACGATGGCTGAGCCCGATCGACCGGCGGATGTGGTTGCGCCGGCGGTCGGTTGAC
GGGTGATAGGCAAACGCCGAGAGGAGCAGGACATACCGCCAGGCGGCGCAGAGCTTTTGAGGTGGATGCGCGGTTCAGTC
GTCGACAAATCAAGCCAAAATGCGATGGCGCCGGGGCCGGGGTGAGTTGAATCCGGCGTCGGTAGCGACGGGCATAAATG
TGTTGATTTTAATATTTTAAATAGTGGATTATGTCAAATAGCGGCGGACTTTCAAATCAGCTATAGCAAAGTTATAGCAG
GCAACGATGGCAAGAAGTGATCGGATCGAAGTGGGGAGGAGCGCGGTGGGTGCTACGTGGTGTCGGCGGGACGTGTGGTG
GCCGATGAGACAAGTATATTCCAAAGTCGGTGCAGCTGTGGTCTAATACCGATAAGGGATTGGGTAGGAACGGCTTAGAA
GTGCAAAACTGAACTTTTATTCCTCGAAAACTGTATAAGGGATCGGTCAGAAGATAATAGACCTCTTTCGTGCTTTCGCA
TGCGATGAAAACGACATAGTTAAA------AACACTTCCTTGTGTCCAAGGAATGCTTATCTAGAAATAA---CACCAGC
ATGGACTCTCATTCGCGGAATGCTATTTTTCT------CCACCACTTTCGCGAATGTCATTGCACAACGAAACTTTGCAA
GCACTTGAAAAATTCAACATTGGTTGCCATAAAAAAATTCATAATTTTTTGAAAACCGTTTCCGTTAATTTTCTTTTTAT
TGCTCAGGCAGGTGC-ATCGATGCTCATGAGCAGAAGAGGACTTTCGCCAGCTACAACG---------CCCAGATAGAGC
CCAGCAGGGATTATCCCAGAGAAACTGACTAACCTAGATGATCAAGGCACGCCAACATACCCAGGCACACTCCCATGATT
GCACTTGCATGCCGTCAACAAATGATAATCCTGCCCAGCGCAGATTGAAGTTCGGCGTCCTCAGCCTATAAATGCCCAAT
TTTTCGGAGGCAACCCTCTGTGCAACCCAGCTGACCATCGATCCATCTCTCGAGATTCCAGAGACTCCACTGCAATCCAG
C-----------TCCCCATTGACCCGTCTCCCTGGAGACTCCACGACGCGCGAATGGCGCTGCCCTCCGAGGAGGTGGTG
GCCATACTCGCGCCGATCATCGTGTACTGGGTCGCCGCCGGCGTGTACACGGTGCTCGGCCGTGTACTGGCTGACCACAG
GCTCCACTCGAGGGAGGAGGAGGAGGTCAGGAACCTCGTCCCCAAGCGTGTCGTGGTCCGCACCGTCCTCCTCCAGCACG
TTCTCCAGGCGGCCATAGCCTTCGCCGTCTTCAATGTAAGCGCAGGTGTACCACATTCATCGATGCTAGCTACTCAGGTG
GCCGTGCAACTGAACTCAAGTTATT---ACTGGACGCAGGTGAAGCGAGAAGATCGCCGGGCTGCCGACGCCGGCACCGG
CGCCGCCACT---------CCCGCCGTGGCCGTCGTCTGCTGCCAGTTCATGGTCGCCATGGTGGTCCTCGACGCGTGGC
AGTACGGGTGGCACCGCCTGATGCACAGCAGCGGCCTGCTGTACCGCCATGTCCACTCCTGGCACCACCGGCTGGTGGCG
CCGTACGCCTACGGCGCCCAGTACAACCACCCGCTGGAGGGCCTGATACTGGACACGGCCGGCGGCGCGCTGGCGCTGGC
CGTGACGGGGATGGCGCCCCTGACGGCCGCCGCCTTCTTCTCGTTCGCGACTCTCAAGGCCGTCGACGACCACTCCGGCG
TGCTTGTCCCGGGCAACCCGCTGCATCTCCTGTTCCGCAACAACACGGCCTACCACGACGTCCACCACCAGGTTCGTGGT
GGCCGCTGCAACTACGCGCAGCTGTTCTTTGTGGCGTGGGACAAGCTGATGGGCACGTACGTCCCTTACGAGGTCGTCAG
AGCTCCGCACGGCGGACTGGAGGCCGTGCCGTTG---AAGAAGAAGTTGAAGACCTGACGGACGGTGCCAGGACATGATC
TTCGTCAGGGGAGCTGCGCGCGTCCCTTCGCTGGAGCGTGAGTCAACCACACCACTAGGCATGCACCTTTTCAGTAGCGA
GGATCATGTCACCAACTCACCATGTCAAGTCTGTCAACGTCCGTATGATAGTAAGG------GCTCGTGAATCATGATCC
GGACCGGTTTGTAACAACGAATACTT-------------------------------------TGCCTGGCGTCGATCCC
GACCGTGTGTACTAAAATATGTTTGTTATGGCAGCCAATTAGTGTTAATAACGAAATTCAGAAATTGACGTGAGG---AT
CCCGAACGACGGGATTTGCCATGATAAATCGAACATTTTTTATAACAAATTTAGTTGATGTGAGGATGACAAGTTTAGTT
GACAAGCACGGCAATTCCCTGGCAAAAAACAAATTGAAGAGGAATTGACATGCTTATCAACTAAATTTGCCATCCCTCCT
GTATATAAATTGCCACAAAAAAAATTAGATTTGCCATGGGTAAATCCCAGACGTACAAGACTTATCGGCCTTCAATATTT
TTTTAGTGTTCATTATGCATAAATTTGGTTGCCATCTTTTTTTGACAAAATTTTCATTGTTATTTGGCTATTCTTTGTGG
TCAAATGACAACCAAGGAGCTCTAGCCAAAAAAATAGTTACTTTTTTGTCAACCAACATTTTCTGTTTGCCACGGGCACC
TTGGATGTCCAAAGATGGAGAAAATTTGCAC-------------------------------------------------
---GAGCATATTTACATTTTTTTTTCGCCAAGAGCTCCTCGAGTGTCCAAACAACACAAT-TTTTACATGAATCCGTGTA
TTTTTTATGCCAAAAGAATTCAGTTTTTTT------------AATTCACTGTTCATCAAACACAACTTATGTGGCGATCA
AA-CCGGTGAACATGTTCAGAATCTAGTTCTGGACGAAACTTATCTGG-TTTAAAACTTGAAGGACCAAATGTCTACCAA
AAAACCTTGAGGGACCAAGTCTACACTTTTGGGGAACTTAAGGCACCAAAAACATACTTTTCCCAATTTATTACTAG---
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-------------------------------------------------------------TGATATTCAAACAGTAAGC
CTGAAGATTCTAGTTATCTCTTGGGACCCCTTATATAATACCTTTTCTCAGAAATCCAGGCCATAGATAATACCTTGTCC
ACTGTGGTGTCCAAAAGATGATCATGAGGAAAATACTTTGCTTTTGACAAACCGACACATACGTAATAGAAAATTGATAT
GAGCCTCCAAGCCTGTCTACCCAAAATTTCTCGATTAAACAGTTCAAGATCTCAAAAACCAATTCCTCGGTGACCTTTTG
GTTTAGCAATCTTGACTCAAGACAGCCAATGAACTTTATCAGGTCTTTTTCATCTCCCAACCAAGAAATATTATTTGTGT
CAAATGAGCATGAAACCCCGTGTGAAATTACCCAC
>chr6B_532
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---------------------------------------------------AGATAATAGACCTTTTTCGTGCTTCCGCC
TGTGACGAAAATGGCATAGTTAAAAAGAAGAACACTTCCTTGTGTCCAAAGAATGCTTATCTAGAAATGACACCAGCATG
ACGGATTGTCATTTGTGGAATGCTATTTTTTCTTTTTGCTACGAGTTCCGTGAATGTCATTCCATGATGAAGCTTTGCAA
GCACTCGAAGATTTCAACAATGGTTGCCAAAAAATTCAG-------TTTTTTATAATTTTTCTATTTTTATTAAATTTAC
TGCTCACAGTAGGGGTATCTGTGCTGGCGAGTAGAAGAGGACTTTCATCAGCTACAGGCCTACAACCCCCCAGATAGAAC
CCATCAGGGATTATCCCAAAGGAAATGACTGGCCTAGATAATCAAGGCACGCCAACGTACTAAA-CATACTTCCGTGATT
GCACTTGCATGCCGTCGCTGTTCACGTTTTCTCCTGCTGGCTGCCGGTTGACATCC-TCATCAGCTTATAAATGCCCAAT
TTTTCGGAGGCAACCCTCACTGCAACCCAGCTGACTATCGATCCATCTCTCCAT-------AGACCCCACTGCAACCCAG
C-----------TGACCATCGATCCATCGCTCCGGAGACTCCACGACGCGCGAATGGCGCTGCCCTCCGAGGAGGTGGTG
GCCATACTCGCGCCGATCATCGTGTACTGGGTCGCCGCCGGTGTGTACACGGTGCTCGGCCGTGTACTGGCTGATCACAG
GCTCCACTCGAGGGAGGAGGAGGAGCTCAGGAACCTCGTCCCCAAGCCGGTCGTGATCC--ACCGTCCTCCTCCAGCACG
TTCTCCAGGCGGCGATAGCCTTCGCCGTCTTCCATGTAAGTGCAGCGGTACCGCATTCATCGATGCTAGCTACTCAGGTG
GCAGTGCAACTGAACTAAAGGAAGTTAAACTGAACGCAGGTGAAGTGAGAAGATCGCCGGGTTGCCG------------G
CGCCGCCACT---------CCTGCCATTGCCGTCGTCTGCTGCCAGTTCGTGGTCGCCATGGTGGTCCTCGACACGTGGC
AGTACGGGTGGCACCGCCTGATGCACAGCAGCGGCCTGCTGTACCGCCATGTCCACTCCTGGCACCACCGGCTGGTGGCG
CCGTACGCCTACGGCGCCCAGTACAACCACCCGCTGGAGGGCCTCGTACTGGACACGGCCGGCGGCGCGCTGGCGCTGGC
CGTGACGGGGATGGCGCCCCTGACGGCCGCCGCCTTCTTCTCGTTCGCGACTCTCAAGGCCGTCGACGACCACTCCGGCG
TGCTTGTCCCGGGCAACCCGCTGCATCTCCTGTTCCGCAACAACACGGCCTACCACGACGTCCACCACCAGATTCGTGGT
GGCCGCTGCAACTACGCGCAGCTGTTCTTCGTGGCGTGGGACAAGCTGATGGGCACGTACGTCCCTTACGAGGTCGTCAG
AGCTCCGCGCGGCGGACTGGAGGCCGTGCCGTTG---AAGAAGAAG---AAGACCTGACGGACGGTGCCATGACATGAT-
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>chr6D_969
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---------------------------------CCCAGCTCAGATTGAAGTTCGGCGTCCTCAGCCTATAAATGCCCAAT
TTTTCGGAGGCAACCCTCACTGCAACCCAGCTGACCATCGATCCATCTCTCCAGAGTTCAGAGACTCCACTGCAACGTGC
AACCCAGCTCGATCCCCATTGATCCACCTCTCCACAGACTCCACGACGCGCGAATGGCACTGCCATCCGAGGAGGTGGTG
GCCATACTCGCGCCGATCATCGTGTACTGGGTCGCCGCCGGTGTGTACACGGTGCTCGGCCGTGTACTGGCTGACCACAG
GCTCCACTCGAGGGAGGAGGAGGAGGTCAGGAACCTCGTCCCCAAGCGTGTCGTGGTCCGCACCGTCCTCCTCCAGCACG
TTCTCCAGGCGGCGATAGCCTTCGCAGTCTTCAACGTAAGCGCAGCGGTACCACATTCATCGATGCTAGCTACTCAGGTG
TCCGTGCAACTCAACTCAAGGAAGTTAAACTGAACGCAGGTGAAGCGAGAAGATCGCCGGGTCGCCG------------A
CGCCGGCACCGGCGCCGCACCCGCCATGGCCGTCATCTGCTGCCAGTTCGTGGCTGCCATGGTGGTCCTCGACACGTGGC
AGTACGGGTGGCACCGCCTGATGCACAGCAGCGGCCTGCTGTACCGCCACGTCCACTCGTGGCACCACAGGCTGGTGGCG
CCGTACGCCTACGCCGCCCAGTACAACCACCCGCTGGAGGGCCTCGTACTGGACACGGCCGGCGGCGCGCTGGCGCTGGC
CGTGACGGGGATGGCGCCCCTGACGGCTGCCGCCTTCTTCTCGTTCGCGACTCTCAAGGCCGTCGACGACCACTCCGGCG
TGCTTGTCCCGGGCAACCCGCTGCATCTCCTGTTCCGCAACAACACGGCCTACCACGACGTCCACCACCAGGTCCGTGGT
GGCCGCTGCAACTACGCGCAGCTGTTCTTTGTGGCGTGGGACAAGCTGATGGGCACGTACGTCCCTTACGAGGTCGTCAG
AGCTCGGCACGGCGGACTGGAGGCCGTGCCGTTGAAGAAGAAGAAG---AAGGCCTGACGGACGGTGCCAGGACATGATC
TTCGTCAGG------------------TCGCTGGAGCGTGAGTCAACCACAACACTAGGCAGGCACCTTTTCAGTTGCAA
GGATCATGTCATT--------ATGTCAAGTCCGTCAACGTCCGTGTGATAGTAGTAGTAAGTGCTCGTGAATCGTGACCC
GGACCGGTTTGTAACAACGATTACTTTTGTCTGTCTCTCAGGAGTACTCCAGTTGTGATGTGGTGCCTGGCGTCGATCCC
GACCGTGTGTAGTACTAAA------TTATGGCAGCCAATTAGTGTTTATTATTGTCTAAAAATATTTGCAAATGATAAAT
CCCGAACGACCGGATTTGCCATGACAAATCGAACGTTTTTTATGACAACTTTAGTTGACATGAGGATGACAAATTTAGTT
GACAAGCACGGCAATTCCCTGGCAAAAAATAAACAGGACGA-AATTGTCATGCTTACCAACTAAACTTGTCATCCCTCAC
ATATATAAATTGCCACAAAAATCGTTCGATTTGCCGTGGGAAAATCCCGAGCATTCGTGGCTTATCGGCGTCCAA-ATTT
CTCTAGTGTTAATTATGCATATGTTTTGGCTGCCGTATTTTTTGACCGAGTTCTCATTGTTATTTGGCTATTCTTTGTGG
TCAAATGACAATCGAGGAGCTCTAGCAAAAAAATAGCTACC--TTTTGTCAACCAACATTTGCTTTTTTCACGAGCCTTG
CACACCAGATCATCCTGAGTGCCAAAAAATTCAGAGTTTTTTGGATTTTTTTTGTTATTTGTTTCGAATTTACTGTTCAT
CTAGAGCATATTTACAATTTTTTC---CCAAAAGCTCCTCGAGTGTCCAAACATCACAAAATTTTACATGGATCTGTGTA
TTTTGGATGCCAAAAAAATCATTTTTTGTGTTATTATTTTCAAATTTATTTTTCATCAAACACAATTTACGTGGGGGTCA
AACCCGGTCAACGTGTTTAGAATCTGGTTTTGGGCCAAACTTACCCGGTTTTAACACTTGAAGGACCAAATGTCTACCAC
AAAATCTTGAAGGGCCAAGTCTATACTTTTGGAGAACTTGAAGAT-CAAAAACATATTTTTCTCTATTTATTACTACTCC
CTCCGTACCGGTGCATAAGCCATCTTACATTATGCACCACGACCAATGAGGAGGGAAAAATGAGAGAACTTAATGTTTAT
TTGCTAATTAATATCATTGTATGCGATGAACTGACCACTGCATGTCATGCTAGGTAGTCTCAAGTCATTAAAAACATACA
CGCCCCACGTTTCTTGTTGGTTGATTCCTTCATTCATGTCAAGAAACAAGAAACGAGGTGAGAGTTAATGCACCGCGCCT
AAATGTTTTGGGATTATTTGGTTTTCATAAGATGACTTATGCACCAGTACAGAGGGAGTACTGATTTTCAAATAGTAAGC
CTGAAGATTCTAGTTATCTCTCGGGACCACTTATATAATACATTTT-TCAGAAATCCAGGCCATAGATAATACCTTTTCC
ACCGTCGCGTCCAAAAGATGGCGCACAAGTTATTG---------------------------------GAAAATTGATAT
GAGCCTCCAAGCCTGTCTAACCAAAATTTCTCAGTTAAACAGTCCAAGATCTCGAAAACCAATTCCTCGATGACCTTTTA
GTTTAGCAATCTTGACTCAAGACATCCAATGAACTTCATGAGGTCTTTCTCATCTCCCAACAAAGAAATATTATTTGTGT
CAAATCAGCACGAAACCCCGTGCGAAATT------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S----------S---S
--S--S-----S-S-----------------------------------S------------------S------S--SS
-S---S-S-----S-S--------------SS-------S--S-S--S--S----------S--SS-S---S--------
-----S---S-S-------S---------S----SSSSSSSSSSSS----SS-S-SSS----SS--SS-S--SSS----S
------SSSSS-S-S----SS----SSS---S--------------SS--------SSS-------------------S-
---S--------------S--S--S-----SS-------S----------------S---SS-SS--S---S--S-----
----------------SSSSSSSSSSSS-S--S-----------------------------------------------
------------------SS-------------------------------S---S-S-----------------S----
----------------------S--S----S-S-----------------------------------------------
-----------------------------------------S--------------------------------------
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-------------S-------------------------------SS---------------------------------
--------------------SS-S--------S----------------------------S-----SSSSSSSSSSSS-
-------------------------S-----------------------S-----------------------S------
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--------------------------------------------SS----------------------------------
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----------------------------------------------SSS-------------------------------
---------SSSSSSSSSSSSSSSSSS------------------------S---------S-------------S--S-
-----------SSSSSSSSSS----------S------------S--------SSS-----------------S---S--
--------------------S-----------------------------------------------------------
-----------S--SS-S-SSSSSS---------------------S--S-SSSSS-SS-S-S---SS-SSSS-S-----
----------S-------------S---------S--------S----S---------SS------------S-------
-----------------------------S---SS-S-SSSS-----S--------S--------S---S--------SS
S--------------------SSS--S--------S----S-------SSS-S-S-SS-S---------S-S---S----
S-S-------S----------SS---S-SSSS-SSSS---------SS-S--S---------------------------
-----------S-S------------S------SSSS-SS-SS------------------S--S---S-SSSS-S-SSS
SSSSSSSSSSS-SSS--SSSSSS-SSSSSSS-------------------------------------------------
----------------S------SSSS----S---------------------S-----S----------S---S-----
----SS---------S---SSSS----S-S----------------S-S-S--------------S---S----S-S---
--------S---S----S-------S---S---S-S-------S-S--------S------------------------S
----S-----S--S---------S--------S------S-S-SSS----------S-----S-S-----------S---
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-----------------------------------------------------------------S------S-------
---------------------S------S------------S----S-----------------------------S---
--S--S-S------------SSSSSS-S-SS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
-------------------S------------SS---------S---------S---------------S---------S
------------------------S-----------S--S--------S------------S------------------
-----S----S-----------S------SSSSSS
>forward_981
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-CACTTGCATGCCGTCAACAA-----------------------------------------------------------
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>reverse_2261
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--------------------ATACTTTGCCTGGCGTCGAT----------------------------------------
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>forward_2096
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----------------------------------------------------------------------------GATC
TTCGTCAGGGGAGCTG----------------------------------------------------------------
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>reverse_3846
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-----GAGCATGAAACCCCGTGTGA----------
