>input_sequence_52446
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----------------------------------------------------------ATGGATCGGGTGGAGGGGATGC
TGAAGGACCTTCATCTGTCCGAGGCGGAGCAGAAGGGGGTGAAGATCACAAGGAGAGGTAGCAGCAGAAGGAGACCGAAT
ACACTGCAGGTATTTGCTAAACTCTTCTTGGAAAGACCAGCTAGAGCTTCGATACTAGAGCGTATTCTTGGTGATATTTG
GAGCCCAATGTATGGAATCGAATGCAAGGAGCTGGGAGGAAATAGATTTCTGTTTACATTCAAAGATGCAGCGGGGAAAA
AAAAGGCAGTAGAAGATGGACCGTGGAACTTTGATAAAGAACTGCTAGTAGTGGAAGAATTCGATGAAAAGAAATCTTTG
GAAGAGCTGCAGTTTAATTCCATACCAATCTGGGTGAGAATATTTGGTTTAATATTTGAAACCATGAATAGAGAAACGGG
AGAATTAATCGGAGATCACATAGGAGAATGCTTAAAAGTGGAAACCGATGAGGATGATTGGGCAGTAGGGGCGTACATTC
GGGTCAAAGTTAAAATTGATATACGTAAGCCCATTATGAGAGGAATGTTCTTGAACCTGGATGAAAGTGATGGAGAGGAT
GAAGAGGGTAGTGCAAGGTATACAGAGAAGGAAACAAATATGGAAGAAAACCAGGATGAAAAAAAGAAAAGGAGATGGGT
TCGCTTTGAATATGAATATTTGCCAAATTTCTGCTATGTTTGTGGAATCATTGGCCACTGTGAAAAAGACTGTACGGTGA
AAATCAAGAAAGGAGAGACCAAGCAATTTGGAGGGAGCTTAAGAGCAAATATGATGCGCCCTAGGAGGCGGGAGGAGAAT
GGAGGAAGATATTTGGGAAACAGGGAGAGCTCCTTCTGGAGATCGAGCAGTGATGGAAGTAGAGGCAGTGATGGTCCAAG
CTGGAGGAAAAAGGATGTTGAGAAAACTAAGAAAGATGAAGGAGAGGAGACGAGCCCAATAAGAAAGCAGAGTTCAGTCG
AAGAAACAACGACGACTAGCAAGAAATATTTGGCTCTCGAGTTGGGGGCTGAAAAAGAGACAAGTGCCAGCAACTCTGAA
AAAGAATCAAGTGCAACTGAAAAGGAAAAAAGAGAAGCGAACCTAGCCAAGGACCAGATGGTGAATAAGCAAACGAAGAA
AACCATGGCCAAGGAAATAGATGGTAATAAATCTGATGGGCAGGTAGGAGGAAAGAAATATAAAAGGCAGGCCAGAGTTA
CTAAGGGGAGCAATGTAAGAGTGGGTATCCAATTGGGAGTAAAAAGGGGACCAGAACCAATGGAGATAGAGGTACCACAC
GAGGTTAACCCAAAGAAAATAAGAGGAGAAGAAGTAAATGAGAAGGAGGAAGAAACCACGATCACAGCCAATAAACCTAT
TGAGAACGCGGGGCTGTCGGGATAG-------------------------------------------------------
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>chr3A_1_TraesCS3A01G011700
CAGTCTACACACTTCATAAACGTACCGGGGCCGCCCGGGGCAACCGGCGGCGGAGGGCTTCGTCCCACACGTGTTCCGGG
CCATGAACCCGAGTCAGC--TACATGCAAGTAAGCCGGCCAGCCGGGCCT---ATTAATATTACTGCTTTCTTCATGAGT
AGAAAGTAAAGTAGAATGATTACAATAGAGCGGAGAGTGGCTACTTACCTTGACCTTCCATGGAGGAGCATATGAGAACC
AGCATTGCCAAGGCCCGTGCGATTGCCACGGAAGAAAAAGAAGAAGAAGAACGCTCCATGATCGCGATCGGCCACTCTCG
AGCTTCTCAGTTCTGCTTTATTTATAGGGCAAATGTAACTGTTGTACTTGTACGTAGTCAAAGAAAATAAGTAACTGGTA
GGGGAGTTGTCTTCCTCTTCTTCTTGG---CGACTAGGATGGAAATTGAGCATGCATGCATGCTAGTGCCACCATGGTCC
AAGTCGTCAGTCAGAGCGTACGGTATA----------TGTTTGCACATGCATTGCGTTCTCAACGTGGGACATGATTCCT
TGCACCAACTCTAGTCCGAGACCCCTCAACGATTTTTCTTGTCCGCTCTGTTCGTAGCGGTGAGTGTCCCTTTGTGGCGA
AAAGTAGGCGACAGAGTTCCCTCTAGTCCCTTCGGCGAGCTTCTAGCTTGGCCGGATTCCCAATCTCGCTAGCACGCTGA
TCGGCGGCCGGGGAATCTTCTCCTTCCACGGCGGCCTCCCGCCCCTCCCTCCGACCAGTCCATCGAGCTCGCCCCACCAC
ACCAGTCCTCAATAGTTCCCGTCACCCCCTTTCCATTCCATAGCCAAGCCGACCAAGCCACCATTCTTCCCCCAATACTA
CCGATTCCTGTCCATAAACCAAAAGCTGGGATTACTCGAACACAATTCCAGATCTTGCTGGAGCCTTAACTAGATAGGAA
CAGCTAGTGAACCAAGGTTCACTGTAGAGGGGCGTACGCCTCTTCTGAATCAGATCTGATGGATCGGGTGGAGGGGATGC
TGAAGGACCTTCATCTGTCCGAGGCGGAGCAGAAGGGGGTGAAGATCACAAGGAGAGGTAGCAGCAGAAGGAGACCGAAT
ACACTGCAGGTATTTGCTAAACTCTTCTTGGAAAGACCAGCTAGAGCTTCGATACTAGAGCGTATTCTTGGTGATATTTG
GAGCCCAATGTATGGAATCGAATGCAAGGAGCTGGGAGGAAATAGATTTCTGTTTACATTCAAAGATGCAGCGGGGAAAA
AAAAGGCAGTAGAAGATGGACCGTGGAACTTTGATAAAGAACTGCTAGTAGTGGAAGAATTCGATGAAAAGAAATCTTTG
GAAGAGCTGCAGTTTAATTCCATACCAATCTGGGTGAGAATATTTGGTTTAATATTTGAAACCATGAATAGAGAAACGGG
AGAATTAATCGGAGATCACATAGGAGAATGCTTAAAAGTGGAAACCGATGAGGATGATTGGGCAGTAGGGGCGTACATTC
GGGTCAAAGTTAAAATTGATATACGTAAGCCCATTATGAGAGGAATGTTCTTGAACCTGGATGAAAGTGATGGAGAGGAT
GAAGAGGGTAGTGCAAGGTATACAGAGAAGGAAACAAATATGGAAGAAAACCAGGATGAAAAAAAGAAAAGGAGATGGGT
TCGCTTTGAATATGAATATTTGCCAAATTTCTGCTATGTTTGTGGAATCATTGGCCACTGTGAAAAAGACTGTACGGTGA
AAATCAAGAAAGGAGAGACCAAGCAATTTGGAGGGAGCTTAAGAGCAAATATGATGCGCCCTAGGAGGCGGGAGGAGAAT
GGAGGAAGATATTTGGGAAACAGGGAGAGCTCCTTCTGGAGATCGAGCAGTGATGGAAGTAGAGGCAGTGATGGTCCAAG
CTGGAGGAAAAAGGATGTTGAGAAAACTAAGAAAGATGAAGGAGAGGAGACGAGCCCAATAAGAAAGCAGAGTTCAGTCG
AAGAAACAACGACGACTAGCAAGAAATATTTGGCTCTCGAGTTGGGGGCTGAAAAAGAGACAAGTGCCAGCAACTCTGAA
AAAGAATCAAGTGCAACTGAAAAGGAAAAAAGAGAAGCGAACCTAGCCAAGGACCAGATGGTGAATAAGCAAACGAAGAA
AACCATGGCCAAGGAAATAGATGGTAATAAATCTGATGGGCAGGTAGGAGGAAAGAAATATAAAAGGCAGGCCAGAGTTA
CTAAGGGGAGCAATGTAAGAGTGGGTATCCAATTGGGAGTAAAAAGGGGACCAGAACCAATGGAGATAGAGGTACCACAC
GAGGTTAACCCAAAGAAAATAAGAGGAGAAGAAGTAAATGAGAAGGAGGAAGAAACCACGATCACAGCCAATAAACCTAT
TGAGAACGCGGGGCTGTCGGGATAGCCCTGCGAGGCCAAATGAAGATTATAGTGTGGAACTGCCGGGGACTTGGCAACCC
CCCGACAGTTAGGGGTCTTCTAAACCTTCAAAAGTCAGAGGATCCTGATATTCTGTTTTTGGCGGAGACGAAAATGTGCA
AAGAAAAGTTGCAGAAGTTTAGGTGGAAGCTAGATTTGACCAATCTATGGGCACACAGCTGTGAAGGCAAAGGCAGGGGA
GGAATAGCAGCGTTCTGGAGAACCGGGGTAGATGCAAGCTTGATAAATTATTCGAGGTACAATATCAGTTTGGAAATTAA
GGACAAGGAAGGTTTCAAATGGAGATTTACCAGAATTTATGGAGAAGCAAAGTTGGAGAGGAAATTCCTGACATGGAAGT
TGTTGAGAATCATAAACAATCAGCAAAACCGTCCATGGCTGGTAGCAGGAGACTTCAATGAAATCTTATTTGACTATGAA
AAAGAAGGAGGCAAGAGAAGGGAGCAAGCTTATGTAGATAATTTCAAACAAGCTCTGGAGGAATGTGATCTTTCCGATCT
AGGATACGAGGGCAATATCTTCACCTGGAGGAACAATAACTACTCATGTGAAGGATATATACGGGAAAGGCTGGACAGGG
CAGTGGCGAACCCAGGTTGGAGAGAGAAATTTAGAGAATATAAGGTGGTCAATGGTGACCCCTATCATTCAGATCACCGT
CCGGTGATGATAATCACCGAGAAAGTACCACAAAATAAAAAGGGGCTACCTAGAAGTGAACATTTTAAGTTTGAAGCTAA
ATGGCTATCAGAACCAGATTGCGAAAAGGTGGTGGCTGAAGGCTGGGAGGATTTTAACTCCATGGGTGACAGAAGTATCC
AGGCAGGATGTAGAAAGGTGGTGATGAAGCTAAAATCCTGGGAAAAAATGTCCTGGGTGATTTAGATGAGAGAATTAGGC
AGATTAAGGATGAACTGGAAACTTGCAGAAGAAACCAATTAACCCAACAGTCGATATCGAGGGAA
>chrUn_6
-----TACGCACTTCATAAACTTACCGGG-CCGCCCGGAGCAACCGCCGACGGAGGGCTTTGCCGCCGACGTGTTCCGGG
CCATAGACCCGAGGCAGCTATACATGCACATAAGCCGGCCAGCCGGGCCTCGGATTAATATTACTGCTTTCTTCATGAGT
AGAAAGTAGAGTAGAATGATTACAGTAGAGCGGAGAGTAGCTACTTACGTTGAGTCGCCGAGGCAGAGCAGAGGAGAATC
AGCACTGCCACGGCGCGTGCTAGTGCCA------AAAAAGAAGAAGAAGAACGCTCCATGATCGGT------CACTCTCG
AGCTTCTCAGTTCTGCTTCTTTTATAGGGCAACTCTAACTGCTGTACTTGTACGTAGTCAAAGAAAATAAGTGACTGGTA
GGCGAGTTCTCTTCCTCTTCTTCTTCTTGCCGACTAGGATGGAAATTGAGCATGCATGCATGCTAGTGCCACCATGGTCC
AAGTCGTCAGTAAAAGTGTACGGTATACGGACTCCAGTGTTTGCACAAGCATTGCGTTCTCAACGTGGCACATGATTCCT
TCCACCAACTCTAGT-----------------------------------------------------------------
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>chrUn_6
-----TACGCACTTCATAAACTTACCGGG-CCGCCCGGAGCAACCGCCGACGGAGGGCTTTGCCGCCGACGTGTTCCGGG
CCATAGACCCGAGGCAGCTATACATGCACATAAGCCGGCCAGCCGGGCCTCGGATTAATATTACTGCTTTCTTCATGAGT
AGAAAGTAGAGTAGAATGATTACAGTAGAGCGGAGAGTAGCTACTTACGTTGAGTCGCCGAGGCAGAGCAGAGGAGAATC
AGCACTGCCACGGCGCGTGCTAGTGCCA------AAAAAGAAGAAGAAGAACGCTCCATGATCGGT------CACTCTCG
AGCTTCTCAGTTCTGCTTCTTTTATAGGGCAACTCTAACTGCTGTACTTGTACGTAGTCAAAGAAAATAAGTGACTGGTA
GGCGAGTTCTCTTCCTCTTCTTCTTCTTGCCGACTAGGATGGAAATTGAGCATGCATGCATGCTAGTGCCACCATGGTCC
AAGTCGTCAGTAAAAGTGTACGGTATACGGACTCCAGTGTTTGCACAAGCATTGCGTTCTCAACGTGGCACATGATTCCT
TCCACCAACTCTAGT-----------------------------------------------------------------
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>SNPs
SSSSS---S------------S-------S--------S-------S--S----------S-S-S-SS------------
----SS-------S--------------SS--------------------------------------------------
--------S---------------S-------------S---------S----SSSS--SS--SS-----S-S-----S-
----S-----S---S-----S-S-----SSSSSS------------------------------SSSSSSSS--------
------------------SS------------S-S------S------------------------------S-------
--S-----S----------------SS-----------------------------------------------------
-----------S-S--S------------------------------S--------------------S-----------
-S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_627
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-----------------------------------------------CTGTTCGTAGCGGTGAGTGT-------------
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>reverse_2286
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---------------------------------------------GGGGACCAGAACCAATGGAG---------------
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>forward_1243
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-----------------------GCAAGGAGCTGGGAGGAAAT-------------------------------------
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>reverse_3235
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----------------------------------GCTGAAGGCTGGGAGGATTT--------------------------
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