>input_sequence_52323
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-------CCCTACCGGCC-GCCGGGAAGATCTGCAACCGGTACGCGGCAACATGCCATCTCTTCTCTTCCGACTTGTGCG
AGCCTTGTTGAATTTGGTCAAGC---AAACATTGTACCCGGCCGCGAAGCC---TGGACGT---GGTGTCCCCGTCCTTG
GCGGTAGCGACGCCGGCTTCAAGAGGCCGGCGGTGCTCACCTGCCCCCGGTACATCATCTCCGTGATCTGTGAATTCGCC
ATGTTGATCTGCACCACCGGGACGCTGTGCTACTACTTCACCTACGACTTGCCACCTGAGTTCTCCGTCCACTTGACGCC
GATCCCGAGCAACAACAGCGTGGGGGCTCCGGCCACGACGACGTCCATCCCCCGGGCCTTCGACATCGTCCTGCACGCCG
GCAACCGCCGCGCTAGGGAGAGGTGCCACCACCACGGGGAGGGAGTGGTGACGTACGGCGGCTACACCGTGGCGTCGGGC
CACGCGCCCGACTTCTGTGTGCCGTGGAAGGGGGCGCGCGAGGTGCCGTTCGAGCTGGCGTGGGGCTGGGACGACGGCGT
TTAC---CTGCCCGAGCACCTGCGCGGCCGCATAGCGGTGGCGGAGAGAGTCTGCGCCGTGGAGTTCGAGGTCCAGGTGA
GACTCCTCCAGGGAGGCAACGCCCGCTCCGGCACGGGCACGCCGACGTGGATGTGGTGCAAAGCGAGGATCGGTGGGGCG
CCTGGCGCCGTCAC------GCCCTGCACCGTGTTCGCTCCACAGAACTGGTTTTCGCCCCTGGCTTAGCCGCCTCGGTG
TCGCCATGTATGAATTTTTGCTTTTCCTGGCGCACAAATGTCCCTCAACGCCAGCCAACCCTTGTGTTGCATGACCGATG
AGGGGACCTGGCTGTCCAGTTTTCGCTCTTTTGATGGCCATTCCTAGCCAGGTGATACGCAAGACTTCTATTTTGATAGC
AATGATTTCCAATGTAATTTCTCTAGGAAACTAGCCGTGTGATTTCATCTAAAAGAAGAAGAAGTTGTGTGATTTTGGTA
AACTGTT---------------GGCGTGGAACTACCTTTTCTCT--TTGTGATTGAGCCGAGTTGTGGTGCATAAGAGAA
TGTTTCAGACGCATCACTCTGCAAGTTCCATTCGGTCTTGGTAAAAAATAATATTCGCATCGAATCGAATGAGCGTTGAT
GTAAAATACTTGGGTATGCATGAATAAAAACATAAATCCAGATGATAAGCGTCTCTAGCTTGATTCTGCATCCACCGTAG
TTCTTTTTACTGCCAACTGGATCCTCATTCATTCCTATGGTGACCCTCCAGCGTGGCCAATATCTGTGCGATTTTTGGAG
CGCACCACATGAAAGTCTCCAGCCCTCGGAGACAGCTGACAATATATGAAGTAATATGCATTGAAAGAATACTGAATAAG
GACAGTTGCTTCGA------------------------------------------------------------------
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-----------------
>chr3D_1_TraesCS3D01G250100
ATGAAGGAGGTGACGGCCCTTGCAGCGTGCGCATGTGGTGCCCACTGAAAGTGCGCCAAACCGGTTTGTAATCCAGTCCA
AGTATTAAGGCTTGGATGGGGCATCCGGCATTAGATGTTAGGTGTTGGTGCGATGTCTGTTTGGTATTAGGCTCGGACAT
TCGGCACCCCATCATCACGGAGATAGGAGTAGCGACTGGTGTTGCCAAAATGATGGCTTCAGGCTTACTGACGTATTACC
TTGTAAGGACTCTGTGTGAATAATCAATAAAATGGTTGTATGCATCGCCCTGATGTAGAGGCCGGAGGTACATCCTCCTT
TTTCAAAAAAAAGTAACCGAGAGAGTAACAGATAACGAGTCGAATCATATCTTATAGTATACCAGCAAAAAGGCCCGCGT
GTTGCATCAGGAGAAAAAATACCACACGCTCTTAATTTTAAGAAAATGGTCTATAATCTGAGAATTTGTAGCTATGGCCA
AACAAC-GATGGTATTAATCTATAAAAGCGTAGTTTAAGATTCTACAAGTGTTCTATTTCGACACGGCTTGCATGTAGAT
TTAATCCATACAAAGAAACAGGCAAGTTATCATGCATTTATTTATGTCATGTTCGGAATGGGATGTTGTTACGGGTGAGT
AAAGGAAAAGGACAAAAACAAATGATCTTGTGGTGCGCATCGTCCAACAGGCCGACCCCAGTTCAGGCGGCGGAGGACGA
TACGGCACTGCAGCTCGTCTTGATCTGGCCAGAACTCGCCGCCTACGGGGAGGAGCAACTCAACAAAGGTTATGGTGCAC
GTCGTCCAACACGTCAATGATGGCATGCGGGTAGGCTACTGGGTCGTTTGCTG---------------------------
--------------------------------------------------------------------------------
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-------------ATGTCAGAAACATTAAG-GGTTTTCTATAAAATAGCAAAACGGACTCAGGGTATTTATTT-TTTTAT
TAGTAGGTATAGAATAGATAGATAAATATAGATTGACATACTG-CACTAGGCAAACAATAACAAATTCGTAGTAT---GC
GCACGCTCCCTACCGGCC-GCCGGGAAGATCTGCAACCGGTACGCGGCAACATGCCATCTCTTCTCTTCCGACTTGTGCG
AGCCTTGTTGAATTTGGTCAAGC---AAACATTGTACCCGGCCGCGAAGCC---TGGACGT---GGTGTCCCCGTCCTTG
GCGGTAGCGACGCCGGCTTCAAGAGGCCGGCGGTGCTCACCTGCCCCCGGTACATCATCTCCGTGATCTGTGAATTCGCC
ATGTTGATCTGCACCACCGGGACGCTGTGCTACTACTTCACCTACGACTTGCCACCTGAGTTCTCCGTCCACTTGACGCC
GATCCCGAGCAACAACAGCGTGGGGGCTCCGGCCACGACGACGTCCATCCCCCGGGCCTTCGACATCGTCCTGCACGCCG
GCAACCGCCGCGCTAGGGAGAGGTGCCACCACCACGGGGAGGGAGTGGTGACGTACGGCGGCTACACCGTGGCGTCGGGC
CACGCGCCCGACTTCTGTGTGCCGTGGAAGGGGGCGCGCGAGGTGCCGTTCGAGCTGGCGTGGGGCTGGGACGACGGCGT
TTAC---CTGCCCGAGCACCTGCGCGGCCGCATAGCGGTGGCGGAGAGAGTCTGCGCCGTGGAGTTCGAGGTCCAGGTGA
GACTCCTCCAGGGAGGCAACGCCCGCTCCGGCACGGGCACGCCGACGTGGATGTGGTGCAAAGCGAGGATCGGTGGGGCG
CCTGGCGCCGTCAC------GCCCTGCACCGTGTTCGCTCCACAGAACTGGTTTTCGCCCCTGGCTTAGCCGCCTCGGTG
TCGCCATGTATGAATTTTTGCTTTTCCTGGCGCACAAATGTCCCTCAACGCCAGCCAACCCTTGTGTTGCATGACCGATG
AGGGGACCTGGCTGTCCAGTTTTCGCTCTTTTGATGGCCATTCCTAGCCAGGTGATACGCAAGACTTCTATTTTGATAGC
AATGATTTCCAATGTAATTTCTCTAGGAAACTAGCCGTGTGATTTCATCTAAAAGAAGAAGAAGTTGTGTGATTTTGGTA
AACTGTT---------------GGCGTGGAACTACCTTTTCTCT--TTGTGATTGAGCCGAGTTGTGGTGCATAAGAGAA
TGTTTCAGACGCATCACTCTGCAAGTTCCATTCGGTCTTGGTAAAAAATAATATTCGCATCGAATCGAATGAGCGTTGAT
GTAAAATACTTGGGTATGCATGAATAAAAACATAAATCCAGATGATAAGCGTCTCTAGCTTGATTCTGCATCCACCGTAG
TTCTTTTTACTGCCAACTGGATCCTCATTCATTCCTATGGTGACCCTCCAGCGTGGCCAATATCTGTGCGATTTTTGGAG
CGCACCACATGAAAGTCTCCAGCCCTCGGAGACAGCTGACAATATATGAAGTAATATGCATTGAAAGAATACTGAATAAG
GACAGTTGCTTCGACAATAGTTTGATTGTTAATAGACATGCTAACACTTACTTTGTAATGCTTCGCAATACACAGGTCTG
GGTGGACTAGCCAAAGGAAGCCACTAATAGTTCCAATAATTGATGCGCAAAACAGTATGATGTTGAACTGAGAGTAGTCC
TGCAAAAACGAAACAAAAACTGAGCACACGTAGAAGTAGAGCATCAGCTAAACAAACAAAAATATATTTTGAAACCTCAA
ACAATTCCACTTTTTTTATATGTTTACATATACTGTCAAACAATTCAAAACTTTACAAGAGTACCGGGCAGTGACTTGAG
GTAGAAGCTGTAGCCAACATCGCTGGTAGCAAGCTTTGGCAACGTCATCGTATCGCCTTCGTGCTTGTGTGCCCCCGGTG
AGTGTGTGTGTGGAGATCAAGAAAGTTTGCACCTTTGTGATAGTTTGACCAATAGGGTTTTTATTTAATTCCTATAAACT
CAATAACAGCCCAAGTCTGGGCCTGTTTAACAACCTAGGTGTTGCAAGACCGAGACTTAAAACCAAGTCCACTAATTAGA
GCCCCAAATCGGTCTAATTATGTAGTAACTTCTTTCCATGTAAGTACTTGAGACTCCAATTGGCGATTGGGCAGCTTACC
AGGGACGAATGGCAACCGGTGGTGGATTAGATCATTAAGCAACTACTGGGCTGGCAAAGAGGGCTGATTGATAGAAGTGG
GAGACTAGTTCTTGTTAATTCTATTGAGAGACCCGCTTTGGTACACCCCCCTGCTAAAACGT------------------
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-------------------------ATAAAGGGTAATATAGTCATTTCATAAGTCGTACTTACTTCTGTATGTATGGCGT
GTAGTCGTATACGTACAGGAGACCATCAGATTGGGCCGGCCCATGAAGATAGCGTATAGCAGCGCTTCAAAAATAAAACA
GCGGTTGCCAGAGCTCGAGCTCCGAACCTATGGAGTACAGCACACGTGGTACAACCATCTTGCCTAGCAACCATTTTTGT
GTAAATGGCAGCGCGAA
>chr5D_378
TATACACT------------------------------------------------------------------------
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---------------------------------------------------------------AGCAAAAAGGCCCGTGC
GTTGCAACGGGAGAAAAAAATAT-CACTCTCTTAATTTACAAAAAATGGTACATAATCTGAGAATTTGTAGTTATGGCCC
AAACAAAGATGGTCTTAACCTATAAAAGTGTAGTTTAAGATTCTACAGGTGTTATATTTCAACACGGCTTGCATGTAGGT
TTAATCCGTATAAAAAAATGGGCAAGTGATCATGCATTTATTCATGTAATGTTCGGAATGGGGTGTTGTTACGTGTGAGT
AAAGAAAAACGACAAAAACAAG-GATCTTGTGGTGCGCATCGTC-AACAGGCCGACCCCGGTTCAGGCGGCGGAGGACGA
TGCGGCACTGCGGCTCATCTTGATCTGGCCAGAACTCGCCGCCTACAGGGAGGAGCGGCTCAACAAAGGTTGTGGTGCAC
ATCGTCCAACAGGCCGATGGTGGCGCGCTGGTAGGCTACTGGGTCGTTTGCTAATATTGGCACCACACCTACCGAGAAAA
GATAGGGGGAAGGAAAGAGGATTGTACCACCACCGGGGATGGTAAACGACGCGACAGGCTGATGGCCAGAGGCGAGGAAG
CGTTGGTGTGGCGATTAACATTGCAGCCTAGATAGTATATTTTGCTGATGGCCAGAGGCGAGGAAGCGTTGGTGTGAGGA
TTAACATTACAGGCTAAATAGTATATTTTAAATTGTTAACAGGTAAAATAACATCATATTTATATTCTACATATTTTTCT
AATCAAATTTCATATATAACATGTTAAATTTGGAGTTACGGTTTAGAAGATATGAGTATTTAAAAAAAACATTTGATATG
TACTGCGGGTTTAATGTCAAAAACATTAGGAGGTTTTCTATAAAATAGCAAAACGGACTAAGAATACCTATTTCTTTTAT
TAGTAGGTATAGAATAGATATAGA--------------------------------------------------------
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---------------------------------TAATATA----------------------------------------
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>chr3A_943
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-------------------------ATATATTTTGACCTACTGCCCCTAGGCAAACAATAATAAATTCGTAGTAC---GC
GCACGATCCCTACCGGCC-GCCGGGAAGATCTGCAACCGGTACGCGGCAACATGCCATCTCTTCTCTTCCGACTTGTGCG
AGCCTTGTTGAATTTGGTCAAGC---AAACATTGTACCCAGCCGCGAAGCC---TGGACGT---GGCGTCTCCGTCCTTC
GCGGTGGCGACGCCGGCTTCAAGAGGCCGGCGGTGCTCACCTGCCCCCGCTACATCATCTCCGTGATCTGTGAATTCGCC
ATGTTGATCTGCACCATCGGGACGGTGTGCTACTACTTCACCTACGATTTGCCACCTGAGTTCTCCGTCCACTTGACGCC
GATCCCGAGTAACAGCAGCGTGGGGGCTGCGGCCGCGACGACGTCCATCCCCCGGTCCTTCGACGTCGTCCTGCACGCCA
GCAACCGCCGCGCTACGGAGAGGTGCCACCACCACGGGGTGGGAGTGATGACGTACGGCGGCTACACCGTCGCGTCGGGC
CACACGCCCGACTTCTGTGTGCCGCGGAAGGGGGCGCGCGGGGTGCCGTTCGAGCTGGCGTGGGACTGGGACGACGGCGT
TTAC---CTGCCCGAGCACCTGCGCGGCCGCATCGCGGCGGCGGAGAGAGTCTGCGCCGTGGAGTTCGAGGTTCAGGTGA
GGCTCCTCCAGGGAGGCGACGCCCGCTCCGGCACGGGCACGCCGACGTGGATGTGGTGCAAGGCGGGGATCGGTGGGGCG
CCTGGCGCCGTCAC------GCCCTGCACCGTGTTCGCTCCACAGAACTGGTTTTCGCCCCTGGCTTAGCCGCCTCGGTG
TCGCCATGTATGATTTTTTGCTTTTCCTGGCGCACAAGTGTCCCACAACGCCAGCCAACCCTTGTGTCA-----------
----------GCTGTCCAGTTTTCACTCTTTTGATGGCCATTTCTAGCTAGGTGATAGG--------CTGTTTT-ATAGC
AATGATTTCCAATGTAATTTCTCTAGGAAACTAGCCGTGTGATTTCATCTGA---AAGAAGAAGTTGTGTGATTTTGGTA
AGCTGCTTTCGAACCGTAGAGAGGCGTGGAACTACCTTTTCTCTCTTTGTGATTGAGCGGAGTTGTGGTGCATAAGAGAA
TGTTTCAGGCGCATCACTCTGCTAGTTCCATTCAGTATCGGTGAAAAATAATGTT-------------------------
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-----------------
>chr3D_944
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--------------------------TATATATTGGCGTACTG-TCCTAGTCGAACTACAACAAATTCGTCGTGATAGGC
GCACGTTCCCTACCGGCCGGCCGGGAATATCTGCAGCGGGTACACGGCAACATGTCATCTCTTCTCTTCCGACTTGGGCG
ATCCTTGTGGAATTTCGTCAAGCAAAAAATACTGCACCCAGCGACGAAGCC---TCGTCGACGCAATCTTCCCGTCCTTC
GCGG---------CGACTTCAGGAGGC---CGGCGCTCAACTGCCCCAGGTACATCATCTCCACGGTCTGCGAATTCGCT
CTCTTGATCTGGCTGTTCGGGACGGCGTACTGCTACCTGACCTACGACCTGCCACGCGAGTTCTCCGTCCACTTGACGCC
GATCCCGAGCAACGCCAGCGCGGGGGCTCCGGCCGCGGCGACGTCCGTCCCCCGGGCCTTCGACGTCGTCCTGCACGCCG
GCAACCGCCGCACCGCGGAGAGGTGCTACCACCACGGGGAGGGGGCGGTGACGTACGGCGGCTTCACCGTCGCGCCGGGC
CGCGCGCCCGACTTCTGCGTGCCGTGGAAGGGGGCGCGCGAGGTGCCGTTCAGGCTGTCGTGGGACTGGAACGACGGCGT
TGGT---CTGCCGGAGAACCTGCGTGGCCGCATCGCGGCGGCGGAGAAGGTCGGCGCCGTGGAGGTCGAGGTCCAGGTGC
GGCTCCTCCGGGGAGGCGACGCCCGCTCCGGCACGGGCACGCCGACGTGGATGTGGTGCAAGGCGGGGACGGGTGGAGCG
CCTGGAGCCGTCAC------CCCCTGCACCGTGTTCGCTCCGCAGAACTGGTTTTCGCCCCTGGCCTAGCCGCCTCCGGT
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>chr3B_944
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--------------------------TATACATTGGCGTACTG-CCCTAGTCAAACTACAACAAATTCGTCGTGATAGGC
GCACGTTCCCTACGGGCCGGCCGGGAATATCTGCAGCGGGTACACGGCAACATGTCATCTCTTCTCTTCCGACTTGGGCG
GTCCTTGTGGAATTTGGTCAAGCAAAAAATACTGCACCCAGCCACGAAGCC---TCGACGC---AATCTTCCCGTCCTTC
GCGG---------CGACTTCAGGAGGC---CGGTGCTCAGCTGCCCCAGGTACATCATCTCCACGATCTGCGAATTCGCT
CTCTTGATCTGGTTGTTCGGGACGGCCTACTGCTACTTGACCTACGACTTGCCACGCGAGTTCGCCGTCCACTTGGCGCC
GATCCTGAGCAACGGCAGCGCGGGGGCTCCGGCCGCGGCGACGTCCGTCCCCCGGGCCTTCGACGTCGTCCTGCACGCCG
GCAACCGCCGTGCCACGGAGAGGTGCTACAACCACGGGGAGGGGGCGGTGACGTACGGCGGCTTCACCGTTGCGTCGGGC
CGCGCGCCCGACTTCTGCGTGCCGTGGAAGGGGGCGCGCGAGGTGCCGTTCAGGCTGGCGTGGGACTGGGACGACGGCGC
TGGC---CTGCCCGAGCACCTGCGTGGCCGCATCGCGGCGGCCGAGAAGGTCGGCGCCGTGGAGTTCGAGGTCCAGGTGA
GGCTCCTCCGGGGAGGCGACGCCCGCTCCGGCACGGGCACGCCGACGTGGATGTGGTGCAAGGCGAGGATCGGTGGAGCG
CCTGGCGCCGTCGCGCCCTGGCCCTGCACCGTGTTCGCTCCGCAGAACTGGTTTTCGCCCTTGGCCTAGCCGCCTC----
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-----------------
>chr3B_949
ATTGAT--------------------------------------------------------------------------
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-------------------------------------CTACTGCCCCAAAGCAAACAATAACAAATTCGTAGTAC---GC
GCACGCT-CCTACCGGCC-GCCGGGAAGATCTGCAACCGGTACGCGGCAACATGCCATCTCTTCTCTTCCGGCTTGTGCG
AGCCTTGTTGAATTTGGTCAAGC---AAACATTGTACCCGGCCGCGAAGCC---TGGACGT---GGTGTCCCCGTCCTTG
GCGGTAGCGACGCCGGCTTCAAGAGGCCGGCGGTGCTCACCTGCCCCCGGTACATCATCTCCGTGATCTGTGAATTCGCC
ATGTTGATCTGCATCACCGGGACGCTGTGCTACTACTTCACCTACGACTTGCCACCTGAGTTCTCCGTCCACTTGACGCC
GATCCCGAGCAACAGCAGCGTGGGGGCTCCGGCCGCGACGACGTCCATCCCCCGGGCCTTCGACGTCGTCCTGCACGCCA
GCAACCGCCGCGCTACGGGGAGGTGCCACCACCACGGGGAGGGAGTGGTGACGTACGGCGGCTATACCGTGGCGTCGGGC
CACGCGCCCGACTTCTGTGTGCCGTGGAAGGGGGCGCTCGAGGTGCCGTTCGAGCTGGCGTGGGACTGGGACGACGGCGT
TTAC---CTGCCCGAGCACCTGCGCGGACTCATCGCGGCGGCGGAGAGAGTCTGCGCCGTGGAGTTTGAGGTCCAGGTGA
GGCTCCTCCAGGGAGGCGACGCCCGCTCCGGCACGGGCACGCCGACGTGGATGTGGTGCAAGGCGAGGATCGGTGGGGCG
CCTGGCGCCGTCAC------GCCCTGCACCGTGTTCGCTCCACAGAACTGGTTTTCGCCCCTGGCTTAGCCGCCTCGGTG
TCCCCATGTCTGAATTTTTGCTTTTCCTGGCGCACAAGTGTCCCACAACGCCAGCCAACCCTTGTGTCA-----------
----------GCTGTCCAGTTTTCACTCTTTTGATGGCCATTCCTAGCTAGGTGATACG--------CTATTTTGATAGC
AATAATTTCCAATGTAATTTCTCTAGGAAACTAGCAGTGTGATTTCATCTGAAAGAAGAAGAAGTTGTGTGATTTTGGTA
AACTGCTTTCGAACCGTAGAGAGACGTGGAACTACCTTTTCTCT--TTGTGATTGAGCAGACTTGTGGTGCATA------
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>chr3A_956
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--------------------------------------TACTG-CCCTAGCCAAACTACAACAAATTCCTCGTAGTAGGA
GCACGTTCCCTACCGGCCGGCCGGGAATATCTGCAGCGGGTACACGGCAACATGTCATCTCTTCTCTTCCGACTTGGGCG
ATCCTTGTGGAATTTGGTCAAGCAAAAAATACTGCACCCAGCCACGAAGCCTCGTCGACGC---AATCTTCCCGTCCTTC
GCGG---------CGACTTCAAGAGGC---CGGCGCTCAACTGCCCCAGGTACATCATCTCCACGGTCTGCGAATTCGCT
CTCTTGATCTGGTTGTTCGGGACGGCGTACTGCTACTTGACCTACGACCTGCCACGCGAGTTCTCCGTCCGCTTGACGCC
GATCCCGAGCAACGGCAGCGCGGGGGCTCCGGCCGCGACGACGTCCGTCCCCGGGGCCTTCGACGTCGTCCTGCACGCCG
GCAACCGCCGCGCCGCGGAGAGGTGCTACCACCACGGGGAGGCGGCGGTGACGTACGGCGGCTACACCGTCGCGTCGGGC
CGCGCGCCCGACTTCTGCGTGCCGTGGAAGGGGGCGCGCGAGGTGCCGTTCAGGCTGGCGTGGGACTGGGACGACGGCGC
TGCTGGGCTGCCCGAGCACCTGCGTGGCCGCATCGCGGCGGCGGAGAAGGTCGGCGCCGTGGAGTTCGAGGTCCAGTTGA
GGCTCCTCCGGGGAGGCGACGCCCGCTCCGGCACGGGCACGCCGACGTGGATGTGGTGCAAGGCGAGGATGGGTGGCGCG
CCTGGCGCCGTCACGCCCTGGCCCTGCACCGTGTTCGCTCCGCAGAACTGGTTTTCGCCCTTGGCCTAGCCGTCTC----
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>chr7D_3141
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-----------------------TTCAGAGACCCGCTTCGGTACACCCCCCCGCTGAAACGTATAAAGGGTAATAAAGTC
ATTTCACAAGTCGTACTTACTTCTCTATGTATGGCGTGTAGTCGTATACGTACCGGAGACCATCAGATTGGGCCGGCCCA
TGAAGATAGCGTATAGCAGCGCTTCAAAAATAAAACAGCGGTTGCCAGAGCTCGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNATAAAGGGTAATATAGTCATTTCACAAGTCGTACTTACTTCTGTATGTATGGCGT
GTAGTCGTATACGTACCGGAGACCATCAGATTGGGCCGGCCCATGAAGATAGCGTATAGCAGCGCTTCAAAAATAAAACA
GCGGTTGCCAGAGCTCGAGCTCAGAACCTCTGGAGTACGGCACACGTGGTACAACCATCTTGCCTAGCAACCATTTTTGC
GCAAATGGCAGCGCGAA
>SNPs
--S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S-S
------S-S----------SSSSS---S----------SS-S--------SS-------------------S-------S
--SS-S-------S----S---------S------------------S-----S------S-----------------S-
-------S--S---S---SS-------S--------------S----S--------------S----------S------
----S----S-----------SS---------------------S--------------S--------------------
-S---------S----S-----------------------------S---------SS-------------S--------
S----------S-S-S---S----SS--S-----------------------S---------------------------
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-------------------S--------S------------------------------S--SS--SS------------
--------------------S-S-S-----S------S-------S----------------------------S-----
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--------------S-------------------S-----------------------------S---------------
---------------S----------------------------------------------------------------
----------------------------------------------------------------S---------------
---------------------------------S----S-----------------------------------------
-S---------------S-------------------------------------------S------------------
--------------------------------------------------------------------------------
-------------------------------------S------S----------------------SSSSSSSSSSSSS
SSSSSSSSSS--------------S-----------------------S----------SSSSSSSS-------------
--------------------------------------------------S-----------------------------
-----S----------------------------------------------------S---------------------
--------S-------------S----------S--S-S---S---------S--SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS--S------------S------------S---S------------------------
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-------------------------------------------------S------------------------------
----------------S---------------------------------------------------------------
----------------------S------S--------S----------------------------------------S
-S---------------
>forward_72
----------------------------------------------------GCGCCAAACCGGTTTGTAAT--------
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>reverse_2250
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---------GGCTGTCCAGTTTTCGCTCT---------------------------------------------------
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>forward_2002
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------AGTTCGAGGTCCAGGTGA
GA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
>reverse_3313
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------ACCTAGGTGTTGCAAGACCG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
