>input_sequence_52321
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---------------------------------------------------------------------TGTACCTACCC
ATCCT-----TGCAGCTCAAAACCACCACCAGTAGACTGTGCCCATGGCGACCTTCTCCAACGAGGAGCTTCTGCAGGCG
CACGCCGAGCTCTGGGACCTCACCTTCGGCTACCTCAAATCCATGGCGCTCGAGTGCGCCATCAAGCTCGGTCTCCCGAA
CGCCATCCACCGATGCGGCGGCGCCGCCACGCTGCCGGACTTGCTCGACGCCGTTTCTGTCCCGGAGAGCAAGAAGGCGC
ACCTGCCTCGCCTCATGAGGTTTCTCGCCGCGTTCGGTATCTTTACTGTCAGTGCACCTGCTGCAGGTGAGTGCGCGGAT
GGGGAGAAGGCGAGCG---TCTACGGCCTCACGCCGGTGTCCCGCCTGCTGGCGGACGACGCCGGCGCCAACGGGTCGTG
CGGGAGCCTCTCGCCGTTCGTGCTCTCCCAGACCACCAAGTACCACGTGAAAGCGGCCATGCACCTGCCAGAGTGGTTCA
TGAGCGACGACGGCGCGGCGGCGGTGGCGATGCCGTTCAGGATGGCGCACGGCACAGACCTGTGGGGCGTCATGGAGCGT
GACCCGAAGATGAACCAGGTCTTCAACGCGGGCATGGGGTCAGACACCCAGCTCGCGATGGACTTCGTCATCAGCAACTA
CGGCGACGTGTTCGAGGGGGTGACCTCGCTGGTCGACGTCGGCGGCGGGCCCGGCTCCGCGGCGAGGGCCATCGCGAGGG
CCTTCCCGCACGTCAAGTGCTCCGTGCTCGACCTCCCCAACGTGGTCAATTCCATCCCGTCCGACGGCGTGGTCGAGTAC
ATCTCAGGTGACATGATGAGCTCCATTCCGACGACCGATGCTGTGTTCCTCAAGGTATAACATATAGTTGCCACGAATAC
ATAACTTCTTTAATTGTTTTATTATGCTAAT--------TAATTCAAATGTTCATGTTGCAGTACATCATGCATGACTGG
AACGACGAGGACTGCGTGAAGATCTTGATGCAGTGCAAGAAGGCGATCCCCGAATCGGGCGGGAAAGTGATAATCATAGA
CATAGTGGTCGGATCTCCTTTGAAAGCCATGCTGGAAGCCCAAGTCTCGTTTGATCTGCTGATGATGGTGATCACGGCAG
GAAAGGAGCGTGACGAGCACGAGTGGCGCAAGATTTTCATGGACGCGGGATTCAGCCACCACAAGACAAGGCCTGTTTTG
GGGTTTATGGCCATCACTGAGCTGTATGCTTAGCCATGCTGTGCATGCGTGGTTACAGCAGATATCTGCTGTAACGTGTG
TGTAAGCGTTGGCCCTGTGATGTTCACCCCA--------------AAGTATTTTTCTGCAGCAACGATTTGTTCCTATGC
CTTTAAAGGCGCCCACATTTGTATTATTTGTTGCTCGGGTATATGGACTTAATAAAATTAGCATTT--------------
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--------------------------------------------------------TGAG--------------------
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----------------------------------------------------------------------
>chr3B_1_TraesCS3B01G155500
AAACGTGGGCTTGGAAAATA-------------------------GTTCGTCCAATTTGAAAAAAGTTCATCGAATTTTA
ACAAAAAGTTCATCGAATTCAAAAAAGTTCATCGGTATTGAAAAAAGTTCATCAAACTTGGGAAAAAAGTTCATCGAATT
TGAAAATAGTTCACCGAATTC--------------------AAAAAAAAGTTCATCGATTCTGAGAAAAGTTCATCGAAT
TTGAA------------------------------------------AAA-------------GAAGTTCAT--------
-----------CAATTTTG----------------------AAAAAGTTCATCA---ATTTTGAAAAAAGTTCATCGAAT
TTGGAAAAAAGTTCATTGAATT------------------------AAATGTTCAACGGTTTTTT-----AAACTCATAA
ATTTTCGAAAGAAATCATTGAATTTGATGAAAGTTCATGATATTTGAAAAAAAGGTCGTGAACATAGAATCACGAATTTG
AACCCAGTTCTTGCATTGAAGA-AAAAAAAGAAC---------------AAAAGGAATAAGAACCGCGACC---------
--------AGGGA-AAGAATAAAAGAAGGAAACATGTACTTGTACAAAAGTGAGTTTGTGTCCTAGTGGTTAGTGCTCTG
CGGTCTCCACGAAGAGAGCTCTTGAGTTCGAACCCTGCCGCCGCGCTAACCTTTTTTGCTTTGGGTTTCAACAAAAAAGA
GGGAAAACGGGC--------------------------------------------------------------------
------------------------------------------------CGGCCCAATTA---------------------
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-----------------------------------------------------------------------------CAA
GCGCCTGCAGGCGCCAGTTGGCGAACCGGCGCATAAGCGCCAAATAGGATTTCCCTTTTTTTTCTGCTTCTTGCAAATCA
AAGTGGGCCGTAACTCTTAACTTAACTTCAAAAAGCAACCATGGGCCTAAGGCCTCGACCACGTTACCCACACACAATGG
CCGGTCAGTGGGTGGCTCACAGAGTGACAGTGCTCTATTTCTCCAAATGCTGTCATTATCTGTCCAGGTGGCATAGCAGC
TACTGGAACGCTGCATGGTGACAGGTGGCACACTAGGTAGTGGTGCACTGCATGCGTCTCCCTGGGGACCTCGAGCCTCC
TGATTC--------ATGTGAGTGTGTGCAGGGGAGCCTATATATCAGGCCATGCTTGATCACACAAGGATGTACCTACCC
ATCCT-----TGCAGCTCAAAACCACCACCAGTAGACTGTGCCCATGGCGACCTTCTCCAACGAGGAGCTTCTGCAGGCG
CACGCCGAGCTCTGGGACCTCACCTTCGGCTACCTCAAATCCATGGCGCTCGAGTGCGCCATCAAGCTCGGTCTCCCGAA
CGCCATCCACCGATGCGGCGGCGCCGCCACGCTGCCGGACTTGCTCGACGCCGTTTCTGTCCCGGAGAGCAAGAAGGCGC
ACCTGCCTCGCCTCATGAGGTTTCTCGCCGCGTTCGGTATCTTTACTGTCAGTGCACCTGCTGCAGGTGAGTGCGCGGAT
GGGGAGAAGGCGAGCG---TCTACGGCCTCACGCCGGTGTCCCGCCTGCTGGCGGACGACGCCGGCGCCAACGGGTCGTG
CGGGAGCCTCTCGCCGTTCGTGCTCTCCCAGACCACCAAGTACCACGTGAAAGCGGCCATGCACCTGCCAGAGTGGTTCA
TGAGCGACGACGGCGCGGCGGCGGTGGCGATGCCGTTCAGGATGGCGCACGGCACAGACCTGTGGGGCGTCATGGAGCGT
GACCCGAAGATGAACCAGGTCTTCAACGCGGGCATGGGGTCAGACACCCAGCTCGCGATGGACTTCGTCATCAGCAACTA
CGGCGACGTGTTCGAGGGGGTGACCTCGCTGGTCGACGTCGGCGGCGGGCCCGGCTCCGCGGCGAGGGCCATCGCGAGGG
CCTTCCCGCACGTCAAGTGCTCCGTGCTCGACCTCCCCAACGTGGTCAATTCCATCCCGTCCGACGGCGTGGTCGAGTAC
ATCTCAGGTGACATGATGAGCTCCATTCCGACGACCGATGCTGTGTTCCTCAAGGTATAACATATAGTTGCCACGAATAC
ATAACTTCTTTAATTGTTTTATTATGCTAAT--------TAATTCAAATGTTCATGTTGCAGTACATCATGCATGACTGG
AACGACGAGGACTGCGTGAAGATCTTGATGCAGTGCAAGAAGGCGATCCCCGAATCGGGCGGGAAAGTGATAATCATAGA
CATAGTGGTCGGATCTCCTTTGAAAGCCATGCTGGAAGCCCAAGTCTCGTTTGATCTGCTGATGATGGTGATCACGGCAG
GAAAGGAGCGTGACGAGCACGAGTGGCGCAAGATTTTCATGGACGCGGGATTCAGCCACCACAAGACAAGGCCTGTTTTG
GGGTTTATGGCCATCACTGAGCTGTATGCTTAGCCATGCTGTGCATGCGTGGTTACAGCAGATATCTGCTGTAACGTGTG
TGTAAGCGTTGGCCCTGTGATGTTCACCCCA--------------AAGTATTTTTCTGCAGCAACGATTTGTTCCTATGC
CTTTAAAGGCGCCCACATTTGTATTATTTGTTGCTCGGGTATATGGACTTAATAAAATTAGCATTT--------------
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--------------------------------------------------------TGAGCTGTTTCTTGGCTCTATATT
AAAGGTTTTTGGATCG--GGTTTTGCTCGATGCTGATCGTCTCGTGTACACACTGCACAGACGTGGATATACAATCCTGT
ATATGATTGTGCTTGGCGTGGTGGTAACTTCTTTGCGGT-----------GATAGTTTTGATGATCATGTTTGATTCTTT
GCTGGCTAATTTCAGAGCACAAACAAGTAGGGATGCATCAGTGCATCCTAGTACTGAAAAAGAACAAGTAGAAGGAGATG
ACACAATTAAATGATTTCTTGGACACAGGGAATGTGAGGCAAGAAACTACTCTACGCTTCAGAGTAAACACGGCTGTCAT
ATAATACACTGAAGATTCAGAGTAAACCAGCATCCATGAGAACGCAGTAAAGAAAACAGCTTACATCAGCACCGGAAATT
CAGGCG----TACATAAACAAACACTAACGGCAATTTATCTGAATCATGCACTGAAAATTCAGTTCACAGCATCACTCTC
TGTCCTATATGCTGAAACTCAGA-CCAACCAATAGGA--TATACGTCAAGGATAATTTCCAGTGAGCATCAGGTCCTATC
CGGAGTCTGCCTAGCGTGCACATGAAATACTTACAAGGTCAGTGTCAGCCCTAGTTCCGTTGTAGCACAACAAACATAGA
GATAGCAATGCCTGTTACAGAACACACACGGACACAGCACGGCCATACCGCATAGTTGTTGTTTCTA-TTGGCAACAAAA
GGCAGTGTT-------GCCACATAGTTCAAACATAAAAGTAGGTTCTACTCAGAAAGGTGGTTCTCGATATATCTAGCTA
CCCATGTCATTTTGTTGGACATGCTAAGTTTGTTGAATGCTCTACCAATTGCAGCATTCTCAACTAGATGAGCATAGTAA
TGGGTAAGATGCGCCTC---------------------------------------------------------------
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---------------------------------------TTCAAATCCAGGGAGATTCATCAGGTTACCCCAAAGATCGT
CAGGGACATCTGTATCTACGCATTCAGATTTCTCTATAGCTTTGGCAAGGTTATCAAGGCTGGTCATCAA
>chr2B_1
AAACGTGGGCTTGGAAAATA-------------------------GTTCGTCAAATTTGAAAAAAGTTCATCAAATTTTA
ACATAAAGTTCATCGAATTCAAAAAAGTTCATCGGTATTGAAAAAAGTTCATCAAACTTGGGAAAAAAGTTCATCGAATT
TGAAAATAGTTCATCGAATTC--------------------AAAAAAAAGTTCATCGATTCTGAGAAAAGTTCATCGAAT
TTGAA------------------------------------------AAA-------------GAAGTTCAT--------
-----------CAATTTTG----------------------AAAAAGTTCATCA---ATTTTGAAAAAAGTTCATTGAAT
TTGGAAAAAAGTTCATTGAATT------------------------AAATGTTCAATGGTTTTTT-----AAACTCATAA
AGTTTCGAAAGAAATCATTGAATTTGATGAAAGTTCATGATATTTGAAAAAAAGGTCGTGAACATAGAATCACGAATTTG
AACCCAGTTCTTGCATTGAAGAAAAAAAAAGAAC---------------AAAAGGAATAAGAACCGCGACC---------
--------AGGGA-AAGAATAAAAGAAGGTAACATGTACTTGTACAAAAGTCAGTTTGTGTCCTAGTGGTTAGTGCCCTG
CGGTCTCCACGA--AGAGCTCTTGAGTTCGAACCCTGCCGCCGCGCTAACCTTTTTTGCTTTGGGTTTCAACTAAAAAGA
GGGAAAACGAGC--------------------------------------------------------------------
------------------------------------------------CGGCCCAATTA---------------------
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-----------------------------------------------------------------------------CAA
GCGCCTGCAGGCGCCAGTTGGCGAACCGGCGCATAAGCGCCAAATAGGATTTCCC-------------------------
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>chr3D_14
GAAAA----------------------------------------------------------AAGTTCATCGAATTAGG
A-AAGGAGTTCGTCAAATTTAT----------------------------------------AAAAATGTTCATCAATTT
TGAAAAAAGTTCATTGAATATAGAAAAAGTTCAAAGAATCTAAAAAAATGTTCATCAATTTTGAAAAAAAATCATCAAAT
TTGAAAAAAAATTCATCAATTTTGGAAAAAAGTTTATTGAATTTGTCAAA-------------ACAGTTTAT--------
-----------CGATTTTGGAAAAAGTTCATCAATTT-------------------------GTAAAAAGTATATTAATT
TTGAGAAAAATTCCATTGAATTTGAAAAGGTTCATCGAATTTGAAAAACT------------------------TCATCA
ATTCTGG-AAAAAAACATTGAATTTGATGAAAGTTCATGATATTCAAAAAAAGT-TCATGGATTTAAAACCACGAATTTG
AACCAAGTTCCCGCATTTAAGAAAACAAAAAATTGAAAAA------GGAAAACGGAAGAAGAACACACATGAATAAGAAC
CGCGACCAGGGTA-AAGAATAAAAGACAATAAGATGTATTTACACATAAGTGAGGTCCTGTCCTAGTGGTGACTGCGCTG
CTCTTTCCCGCA--AGAGCTGTTGTGTTCAAACCCCGCTTGCGCACAGT--TTTTTCGGTT-TCGTTTGAATAGAAAAAA
AGGGAAACGGGC--------------------------------------------------------------------
------------------------------------------------CGGCCCAGCGCAGCGGGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGTATCGTGCGCAGAAGACGTCAAATAGGATTCCCTCCTAACCGGCGCCTTAAGCGCCGGTTCAGCCAGCTA
GCGCTTGCACGTCCTAGCTGGTGGGCCGGCCCACGAGAAGCTGCGTAGCGGAAAAGAATCTATGCGCAAAAATAATCCCG
TAA-----------------------------------------------------------------------------
--------------------------------------------AAATATTGCGCCTGTCAGGATTCGAGGTCAAGCAGT
GACGCTTCAAAGACTATGCCTAACCATT----------------------------------------------------
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-----------------------------AGACAACCAACAGCTAGTGAATTATTACAGC--------------------
--------------------------GCCATGCCTTTAAGAATGTGTGCAGCCATGCTATTTATTGTATATAACTTTTGA
AAAAGAGATTTATTTTGAACAAAAATGTGAAGAAATTTTGAAAGTTCAGAGCTTTCAGAACAAATCATGAAATAAAAAAA
ACACCTATTTCAAAAAAGTTCGCAAACATGAAAAGAAATTCATCAATATTGAAAAATAGTTCATCGATTTTGGAAAAGTT
CATCAATTTTGAATAAAAGCTCATCGATTTTGAACAAAATGGTCGTCATTGTTTTAAGCA--------------------
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--AAGTTCATCAATTTTGTTTTTAAAAAAGT--------TCATGGAC---------------------------------
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----------------------------------TTTGAAAAAAAGTTCGAAGAATTTGAAAAAATGTTCATCGATTTTG
AAAAAA---------------------------------------------------------------------GTCAT
TGAATACAGAAAAAGTTCATTGAATTTGAAAA-------------------------AAGTTCATCCAACATGAAAATTT
CATCAAC--ATAGGAAAAAAGTTCGCCGAATTTGAAGAAAATGTTCATTGATTTTGAAAAAGGTTCATCGAATACCAAAA
GAGTTCATTGAATTTGAAAAAAGTTCATCCAACATGA--AAAACATTCATCAAATTAGGAAAAGAGTTTG----------
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--------------------------TCAAATTTGAAAAAATGTTATCGGTTTTGAAAAA--------------------
-------------------------AAGTTCGTTGAATGCAGAAAAAGTTCAAACAACCCAAAAAAATGTTCATCAATTT
TGAAAAAAGTTCATAAAATTTGAAAAAAAGTTCATCAATTTTGGAAAAAGATTATTGAATTTGTAAAAAAAATATCGATT
TTGAAAAAAAGTATATAGATTTTGAAAACATTTCATTGAATTTGAAAAAACTTCATCAATTCTGGAAAAAATACATTGAA
TTTGATGAAAGTTCATGATATTCGAAAAAAGTTTGTGGATTTAAAATCACGAATTTGAACCAAGTTCGCGCATTTAAGAA
AACAAAGAATAGAAAAAGGAAAACAGAAC-----------------------------------------
>chr2B_15
---------------AAAAA-------------------------GTTTGTCGAATTTGAAAAAAGTTCATCAAATTTGA
A-AAAAAGTTCATTGAATTAAAAAAACTCGGGGTATT------------------------GAAAAAAGTTCATCAAATT
TGAAAATAGTTCATCGAATC----------------------AAAAAAAGTTCATCGATTCTGAGAAAAGTTCATCGAAT
TTGGA------------------------------------------AAA-------------AAAGTTCATTGAATTTG
TAGAAGTTCATCAATTTTGAAAAAAGTTCATCCAATTTGTAAAAAAGTTCATCG---ATTTTGAAAAAATTACATCAAAT
TTGAAAAAAAGTTCATTGAATATGAAAAAGTTCATCAAATTTGAAAAAAA-AACAACGACATTTTTAAAAAAATTCATAA
TTTTTCTAAAAAACTCATGGAATTTGATGAAAGTTCATGATATTTGGAAAAAGT-TCGAGAATAT---------------
-------------------AGAA------------AAAAA------GGAATAAGGAGTAAGAACCGCGACG---------
--------GGGAA-AAGAATAGAAGAAAGTCACATGTATTTGTACATAAGTGAGTTAATGTCCTAGTGGTTAGTGCCCTG
CGATCTCCACGA--AGCAATCCTGAGTTCGAACCCCGCCAGCGTACTCATCTTTTTTGCTT-GGCTTTGAA-AAAAAAAA
GGGAAAACGGGC--------------------------------------------------------------------
------------------------------------------------CGGCCCAATTA---------------------
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-----------------------------------------------------------------------------CAA
GCGCCTGCAGGCACCAGTTGGTGAACC-----------------------------------------------------
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>chr7A_15
---------------AAAAA-------------------------GTTCGTCGAATTTGAAAAAAGTTCATCAAATTTTA
A-AAAAAGTTCATCGAATTCAAAAAA-----------------------------------------AGTTTGTCAGTAT
TGAAAAAAGTTCATCCAATTC--------------------AAATAAAAGTTCATCGATTCTGCGAAAAGTTCATCGAAT
TTGAA------------------------------------------AAA-------------AAAGTTCAT--------
-----------CGATTTTCAAAAAAGTTCATCCAATTTGTAAAAAAGTTTATTG---TTTTTGAAAAAATTACATCGAAT
TT-GAAAAAAGTTAATTGAATTTGAAAACGTTCATCAAATTTGAAAAAAAGTTCAACGATTTTTTTTAAAAAACTCATAA
ATTTTGGAAAAAAATCATCGAATTTGCTGAAAGTTCAGGATATTTGGAAAAAGT-TCATGAATATAGAATCACGAATTTG
AACCAAGTTCGTGCAATGAAGAA------------AAAAA------GGAAAAAGGAATAAGAACCGCGACC---------
--------GGGGA-AAGAATAAAAGAAGGTAACATGTATTTGTACACGAGTGATTTAGTGTCCTAGTGGTTAGTGCGCTG
CGGTCTCCACAT--AGAAATCCTGAGTTCGAACCCCGCCTGCGGACTCACCTTTTTTGCTT-GGGTTTGAA-AAATAAAG
GGAAAAACGGGCCGGCCCAATAACAAGCGCCTGCAGGCGCCAGTTGGCGAACCGGCGCAGGATTCGCCTCATTGAATTAC
CGAGACAGAAATTTTGCTTGGGTTTGAAAAATAAAGGGAAAAACGGGCCGGCCCAATAA---------------------
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-----------------------------------------------------------------------------CAA
GCGCCTGCAGGCGCCAGTTGGCGAACCGGCGCA-----------------------------------------------
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----------------------------------------------------------------------
>chr1B_15
AAAATGTTCTTCGATTCCGAAAAAAGTCATCGAATTTGAAAAAATGTACATCGATTTTGAAAAAAGTTCATCGAAATATG
--AAAAAGTTCATCGATTTCAAAAAA-----------------------------------------AGTTCATCGAATA
C--AAAAAAATCATCAAATTT--------------------GGGGAAATGTTCATCAACTTC--AAAAAATGCATCAAAT
TTGAA------------------------------------------AAA-------------AAAGTTCAT--------
-----------CGATTTCGAAAAAAGTTCGC--------------------------------------------CAAAT
TTGAAAAAAAGATCATCAAATTTGAAAAA-----TCTATTTTGAAAAAAG-TTCGTCGAATA-TGAAAAAAACCACATCA
ATTTTGGAAAAAATTCATTGAATTTGATGAAAGTTCATGATATTCGAAAAAAGT-TCGTGAACTTAACATCACGAATTTG
AACG-AGTTCACGCATTTAAGAAAAAAAGGAAAA-AAGAAACAAGAGAAAAAATGAATAAGAACCGCGACC---------
--------TGGAGGAAGAATAAAAGAAAATAA-ATGTATTTATGCACACCTGAGGTTGTGTCGTAGTGGTAAGTGTGCTG
CTCTCTCCACCA--CGAGCTCTTGAGTTTGAACCCCGCC-----------------------------------------
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>chr4B_36
------------------------------------------------------------AAAAAGTTCATCAAATTTGG
G--------------------------------------------------------------AAAAAGTTCATCAAATC
TTAAAATAGTTCATCGAATTC--------------------AAAAAAAAGTTCATCGATTCTAAGAAAAGTTCAAAGAAT
TTGAA------------------------------------------AAAAAACGAATTTGTAAAAGTTCAT--------
-----------CGACTTTGAAAAAAGTTCATCCAATTTGTAAAGAAGTTCATCGGTTTTTTTAAAAAAAT--CATCAAAT
TTGAAAAAAAGTTCATTGAATTTGAAAAAGTTCATCAAATTTAAAAAAAG-TTCAACGAATTTTTTTAGAAACTCGTAAA
TTTTGGAAAAAAAATCATTGAATTTGATGGAAGTTCATGATATTTGAAAAAAGT-TCATGAATACAGAATCACAAATTCG
AACCAAGTTCGCGCATTGAAGAAAACAAAAAAAC-AAAAA------GGAAAAAGGAATAAGAACCGTGACC---------
--------GGGAA-AAGAATAAAAGAAAGTAACATGTATTTGTACACAAGTGAGTTAGTGTCCTAGTGGTTAGTGCGTTG
CGGTCTCCACGA--TGAGCTCTTGAGTTTGAACCCCGCTAGCACGCTCACCTTTTTTGCTT-GGGTTTGAACAAAAAAAA
GGGGAAACGGA---------------------------------------------------------------------
------------------------------------------------CGGCCCAATTA---------------------
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-----------------------------------------------------------------------------CAA
GCGCCTGCAGGCGCCAGTTGGCGAACCGGCGCATAAGCACCAAATAGGATT-----------------------------
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>chr3D_675
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-------------------------------------------------------TTTTTTTTCTGCTTCTTGCAAATCA
AAGTGGGCCGTAACTCTTAACTTAACTTCAAAAAGCAACCATGGGCCTAAGGCCTCGACCACGTTACCCACACACAATGG
CCGGTCAATGGGTGGCTCACAGAGTGACAGTGCTCTATTTCTCCAAATGTTGTCATTATCTGTCCACGTGGCATAGCAGC
CAGTGGAACGCTGCATGGTGACAGGTGGCACACTAGGTAGTGGTGCACTGCATGCTTCGCCGTGGGGACCTCGAGCCTCC
CGATTCATGTGACTATGTGAGTGTGTGCAGGGGAGCCTATATATCA---------------CACAAGGATGTACCTACAC
ACCTTGCAGGTGCAGCCGAAACCCACCACCAGTCTG-TGTGCCCATGGCGACCTTCTCCAACGAGGAGCTTCTGCAGGCG
CACACCGAGCTCTGGGACCTCACCTTCGGCTACCTCAAATCCATGGCGCTCGAGTGCGCCATCAAGCTCGGTCTCCCAAA
CGCCATCCACCGATGCGGCGGCGCCGCCACGCTGCCGGACCTGCTCGACGCCATTTCTGTCCCGGAGCGCAAGAAGGCGC
ACCTGCCTCGCCTCATGAGGTTTCTCGCCGCGTTCGGTATCTTTACTGTCAACGCACCTGCTGCAGAGGAGTGCGCGGAT
GGGGAGAAGGCGAGCGCCGTCTACGGCCTCACGCCGGTGTCTCGCCTGCTGGTGGACGACGCCGGCGCCAACGGGTCGTG
CGGGAGCCTCTCGCCGTTCGTGCTCTCCCAGACAACCAGGTACCACGTGAAAGCGGCCATGCACCTGCCGGAGTGGTTCA
TGAGCGATGACGGCGCGGCGGCGGTGGCGATGCCGTTCAGGATGGCGCACGGCACAGACCTGTGGGGCGTCATGGGGCGT
GATCCCAAGATGAACCAGGTCTTCAACGCGGGCATGGGTTCCGACACCCAGCTCGCGATGGACTTCGTCATCGGCAACTA
CGGCGACGTGTTCGAGGGGGTGACCTCGCTGGTCGACGTCGGCGGCGGGACCGGCTCCGCGGCGAGGGCCATCGCGAGGG
CCTTCCCGCACGTCAAGTGCTCCGTGCTCGACCTCCCCAACGTGGTCAATTCCATCCCGCCCGACGGCGTGGTCGAGTAC
ATCTCAGGCGACATGATGAGCTCCATTCCAAACACCGATGCGGTGTTCCTCAAGGTACAACATATAGTTGCCACGAATAC
ATAACTTCTTCAATTGTTTTATTATGCTAAT--------TAATTCGAATGTTCATATTGCAGTACATCATGCATGACTGG
AACGACGAGGACTGCGTGAAGATCTTGACGCAGTGCAAGAAGGCGATCCCCGAATCGGGCGGGAAAGTGATAATCATAGA
CATAGTGGTCGGATCTCCTTTGAAAGCCATGCTGGAAGCCCAAGTCTCGTTTGATCTGCTGATGATGGTGATCACGGCAG
GCAAGGAGCGTGACGAGCACGAGTGGCGCAAGATTTTCATGGACGCGGGGTTCAGCCACTACAAGACAAGGCCTATTTTG
GGGTTTATGGCCATCACCGAGCTGTATGCTTAGCCATGCCGTGCATGCGTGATTACAGCAGATATCTGCTGTAACGTGTG
TGTAAGCGTAGGTCCTGTGATGTTCATCGTGGTTGTCG-------AAGTGTCTTTTTGCAGCAACAATTTGTTCCTACGT
CTTTAAAGGCTCCCATATTTGTATGATCTGTTGCTCGGCTATATGGACTTAATAAAATTAGCGTTT--------------
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--------------------------------------------------------TGAGGTATTTTTTGGCTCTATATT
AGAGGTTTTGGGATCG--AGTTTTGCTCGATGCTGATGGTCTCGTGTACACACTACACAGACGTGGACATATATGGAAAT
ATACTTTGGCCACTAAACCTGCCAGTTCAGTTTGTGGCTGTCA--CTGAACATAGTTTTCATGCTCTGGTATCCTGAACC
AAACCAGGAGCTTTACAGCATGTGGTTCGCCAGGTTTGGGAAAAACTTCGATAGGAACACCGCAAAG-------------
--------------------------------------------------------------------------------
-----------------------------------------------------AAGCAACTTACACCAGCACAAAAAATT
CAGGGGC--ATACGTAAACAAACACTAACGATAATTTATCTGACTCATGCATTGAAAATTCAGTTCATAGCATCACTATC
CGTCCTACATGCTGAAATTCAGA-TCAACCAATAGGA--TATGCATCAAGGATATTTTGCAACGAGCATCAGGTCCTGTC
CGGAGTGTGACTAGCATGCACATGAAATATTTACAAGGTCAGTGTCAGCCCTACTTCCCTTGTAGCACAACAAAC--AGA
GATAGCATAGCCTGTTACAGAACAAACATGGACACAGCACGGCCATGCCACATAGTTGTTGTCCGTA-TTGGTAACAAAA
AGCAGTTTTACCACTTACCACATAGTTCGAATATA----------CTACTCAGAAAGGTGGTTCTTGATATATCTAGCTA
CCCATGCCATTTTGTTGGACATGCTAAGTTTGTTGAATGCTCTAGCAATTGCAGGATTCTCGACTAGATGAGCATAGTAA
TGGGTAAGATGCGCCTC---------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TTCAAATCCAGGGAGATCCATCAAGTTACCCCAAAGATCTT
CAGGGACATCTGTATCTACGCATTCAGATTTCTCTATGGCTTTTGCAAGGTTATCAAGGCTGGTCATCAA
>chr3A_788
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--------TGGGTGGCTCACAGAGTTACAGTGCTGTATTTCT-CAAATGTTGTCACTCTCTGTCCACGTGGCATAGCAGC
TAGTGGAACGATGCATGGTGACAGGTGGCACACTAGGCAGTGGTGCACTGCATGCTTCGCCCTGGGGACCTCGAGCCTCC
TGATTC--------ATGTGAGCGTGTGCAGTGGACCCTATATATCAGGCCATGCTTCATCACAGAAGGATGTACCTAACC
TTGCAACAAAGTTCAGTTGAAA--ACCACCACTAGTCTGTGCCCATGGCGACCTTCTCCAACGAGGAGCTTCTGCAGGCG
CACACCGAGCTCTGGGACCTCACCTTCGGCTACCTCAAATCCATGGCGCTCGAGTGCGCCATCAAGCTCGGCCTCCCAAA
CGCCATCCACCGCCGCGGCGGCGACGCCACGCTGCCGGACTTGCTCGACGCAGTTTCCGTCCCGGAGAGCAAGAAGGCGC
ACCTGCCTCGCCTCATGAGGTTTCTCGGCGCGTTCGGCATCTTCACCGCCGACGCACCCGCTGCAGGGGAGCGCGCGAAT
GGGGAGGAGGCGGGCGCCGTCTACGGCCTCACGCCGGTGTCCCGCCTCCTCGTGGACGACTCCGGCGCCAACGGGTCGTG
CGGGAGCCTCTCGCCGTTCGTGCTCTCCCAGACGACCAAGTACCACGTGAAGGCGGCCATGCACCTGCCGGAGTGGTTCA
CGAGCGACGACGGCGCGGCCGCGGCGGAGATGCCGTTCCGGACGGCGCACGGCGCAGACCTGTGGGGCGTCATGGACCGC
GACCCCAAGATGAACCAGGTCTTCAACGCCGGCATGGGGTCCGACACCCAGCTCGCGATGGACTTCGTCATCGGCAACTA
CGGCGACGTGTTCGACGGGGTGACCTCGCTGGTCGACGTCGGCGGCGGGACAGGCTCCGCGGCGAGGGCCATAGCCAAGG
CCTTCCCGCACGTCAAGTGCTCCGTGCTCGACCTCCCCAACGTGGTCAATTCCGTCCCGCCCGACGGCGTGGTCGAGTAC
ATCTCAGGCGACATGATGAGCTCCATTCCGGCGACCGATGCGGTCTTCCTCAAGGTACGATATATAGTTGCCATGAATGC
AGATCTTGTTTTGGGGTGAACGATTGCTCTATGCCAACGTAATTTAAACGTTCATATTGCAGTACATCATGCATGACTGG
AACGACGAGGACTGCGTGAAGATCCTGAAGCAGTGCAAGAAGGCGATCCCCGAATCAGGCGGGAAAGTGATAATCGTGGA
CATAGTGGTGGGATCTCCTTTGAAAGCCATGCTGGAAGCCCAGGTCTCGTTTGATCTGCTGATGATGGTGATCACGGGAG
GCAAGGAGCGCGACGAGCATGAGTGGCGCAAGATTTTCATGGACGCGGGGTTCAGCCATCACAAGACAAGACCTGTTTTG
GGATTTATGGCCATCACCGAGCTGTATGCTTAGCCC-----TGCATGCCTGATTGCAGCAGATATCTGCTGTAACGTGTG
TGTAAGCGTTGGTCCTGCGATGTTCGTCGTGGTTGTGCAGCCCCAAAGTGTCTTTCTGCAGCAACGATTTGTTCCTACGC
CTTTAAAGGCTCCCATATTTGTATGATCTGTTGCTAGGGTATATGCACTTAATAAACTAGATGACACCCCGCCCGTTGCT
GCGGGAATTGTAGCAATTAAAAAATTGGAAATTGGACAAATGAAAAGATAATTTGAATATACTTGTTAACTGTGTTGTCT
CTCGGCTAAATTAAACCCATTTCATGACACCGAGCAATACACAATACAAATATTTTCCATTTTGCTTTAAGAAATATCAA
CATTACTACTCTTTCAATTGTCCAGTGACTAAATATAGTGAGCATGAAATCATCTGTTCATCCAAAACATCTCACAAAAG
GAGCAAATAAAAATAGAACAAATCAAATAGGCATCGATGATTGCCTTGGGAGGTGATAATGCTTCTTAGTCACCTACATT
ATACTCACTTCTTATCTTCAGTCGATGACCATAGCACAGTGTTGGCAATTGAAAACTGGAAAGGAAACAACGTGTGAGAA
GAGGTGCATGATGTCAAGAACATAGGCATACCAATTCTGGTTGTGACATTATTACAGCCAAGTAATTAAACCTGTACTAC
ATTTAGTGAAGGAAATATTAGACAACAATTAGCAAGAAATTAACAATATTAGAGAAATTTGCAAGAAAGGTCAGTTTCAA
CAGGAAATAAAATAGTGAGGCAATCTAACAGTTCAGTGGACAGAGAGTTAGCCCTCCATCTCAACTTGAAACTTTAATGC
AATATTGGCAGGAAATTGTCCCGATAGTAACTGAAAAGGGAATGAGAATTAATACAATACATGAAAATAGAATGACATTA
AAATATAAAGAATATATGTATCCTGATGCTAACAGAACGTAGAAGATTAAAAGAGAACACATCACCTCTGCTTATGATAA
GAGAAGGACCTCAAACGCTACACAGAAGGCATAGTAGAGCAAAGAACAAAGCATGTTAGTTAATGTTTGGGATTACCTGC
CTGAGTTCGGCTGGCAACAAACTCGAACAGTGTCCAGGATTGCAAAGTATTGCGTCACCAGTCCACTGCAGTGCCTCCAA
TGGGTGGCTGCATCAAGGACGACGACAATCCGATCTGCTTAAAATTGATGTCCACATTCTACTATTATGGGCTCGATTAG
CCTTACAGACTTGAAATAAGGTGTTATGGAGATCTGCAGTTATGCCGCACACATACATGTTCAGAAGATTTTTAAGGTCT
GGGATGTAGGAACTCGTGGTTGGAGCATGGCATGTTATAATACTGCCAGAATAAAACAACGTACCTGAAAATGAACTGGA
CTACTCTGATCCTCTGGTCCTACAAAACAATCATAATAGTTCAAACTGAATACAGATAAAATTTGTACTAATCAAACATG
AGAGAGAGATATGCAGGTCTGTAGTTGAGCAAATATCAGAACATCCAACCAAGCTGACTCGGGACTGAGAGGGAGGAGAG
TCCCAACCTCTTATCCACGTGACATTCAAGGAGGACGGCGCCCGGCGGCAGCACATCTAGTTCAATGGGTGTCCGGTTCG
ACGCCTGGGCGCGGGATTTGGGCAGCAGAGCCGACGGTGGTGGCAAAATAGGGATTCAGGTTGGCAGCAACACAGAAATC
CGGCAGCCACGAACTTCTTACCCAACCATGGCATGCGTTTCGATCTCATGGCGTGAGTGGAACCGATGAGCCCGGAAGAG
AGGTTAATAACAGAGGAGATCAACCGTGTGGTGGAGAAAATAACTTGGAGGATACCAAAGGGTGTCGTGGAGACCATTAT
TTCTTAGGGAAAAAAGCTGAAATATCATATATGTAATCTAGGAAAAAAAGATTAATTTGCTTATGTGGTGGTTTGCTGAG
TTGGATAGGCTGTTGCTCCCTGAAGTTTCACCTTCCGCCACAAGACATGAAGAGACAGCTAAACATTTGGGCTTCTTTTT
GTTTTAGACGATCGGGCTTCGGTGCACAGTATATAAGACTGTAATCCGGTTTTTTTTTGCATGGAGGATATGGCGGGCCA
AAGAATGAATGTCTCATGGCTGTATGCGGACGCATTGCTATGATGAAGAATTGATGACATGGCCAAGTGCTGATGTGGAC
AGCTTGCATGTCTAGATAAATAAGGTAGTGGGGGTAAACTTCTTAGGTATATAGGATGAGCTATTCTTTGGATCTATATT
ACTCCTATATTAGAGGTTGGTTTTGCTCAATGTTGATGGTCTCGTGTACACACTACACGATGC-GGACATGTATGGAAAT
ATACTTTGGCCACTAAACCCAC-----CAGTTCGTGGCTGTCAAGCTGAAGATAGTTTTCATGCTCTGGTATCCTGCACT
AAACCAGGAGCTTTACAGCATGTGGTTCGCAGG--TTTGGGAAAGCTTCCATAGGAAGACCGCAAAG-------------
--------------------------------------------------------------------------------
-----------------------------------------------------AT---------------------AATT
CAGGCGTATATACGTAAACAAACACTAACGAGAATTTATCTGACTCGTGCATTGAAAATTCAGTTCACAGCATCACTATC
TGTCCTATATGCTGAAATTCAGA-TCAACCAATAGGGGGTATACATCGAGGATAATTTGCAACGAGCATCAGGTCCTATC
CGGAGTCTGACTACCATGCACATGAAATGTTTACAAGGTCAGTATCAGCCCTAGTTCTGTTGCAGCACAACAAACATAGA
GATAGCATAGCCTGTCACAGAACACACATGGACACAGCACCGCCATACCGCATAGTGGTTGTCTATATTTGGCAACAAAA
AGCAGTGTT-------ACCACATAGTTCAAATATAAAACTAGGTTTTACTCAGAAAGGTGGTTCTCAATATATCTAGCTA
CCCATGTCATTTTGTTGGACATGCTAAGTTGATTGAATGCTCTAGCAATTGCAGGATTCTCAACTAGATGAGCATAGTAA
TGGGTAAGATGCGCCTC---------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TTCAAATCCAGGGAGATCCATCAAGTTACCCCAAAGATCTT
CAGGGACATCTGTATCTACACATTCAGATTTCTCTATAGCTTCGGCAAGGTTATCAAGGCTGGTCATCAA
>SNPs
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S----------------------------------------------S---
------------SS------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S-----------------------------------------S----------------S-------------
-------------------------------------------------------S--S---------------------
--------------------------------------------------------S-----------------------
-----------------S-----------------S--------------------------------------------
---S-------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
---------------------------------------------------SS--------------S------------
----------------------------------------------------S---------------------------
---------------------------------S-----------------------------------S----------
--------------------------------------------------------------------------------
-----S------------------------------------------------------------------S-------
-------------------------------------------------S------------------------------
-----------------------------------------------------------S--------------------
--------S--------------------------------S---------------S----------------------
-------------------------------------------------------S------------------------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
-S-----------------------------------------------S------------------------------
-----------------S---------------------S-----------S----------------------------
------------S-------------S-SSS------------------S-S-------------------------S--
----------S----S--------S--S----------------------------------S-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------S---S-------------
-S-----------------------------------S----------------S------------S---S-SSSSSS-
---SSS-S-SSSS-SSSSSS-SSSSSS-SSS--SSS-S---------------------S---S--SS--S-SS-S-SS-
SSSSSSSS-SS-SSSSSSSSSSSSSSSSSSS-SSSSS-S--SSS-SSSSSS--SSS-S------S-SS-SSSS-SSSS--
-S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
SS------SSS--SS----SS-S-SSSS-SS-SSSSSSSSSSSSSSSSSSSSS--S--S------S------SSS-----
-------------S----------------SS-----------S-------S-------------------------S--
-----------------S------S-------------------S-------------S--SS-----------------
---------S-----S-------------S--------------------------------------------------
-------SS-------------------S---------------------------------S-S---------------
S---------------S--------------S------S-----------------------------------------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----S---------------S-
----------------------------------------------------------------------
>forward_734
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CTCTG
CGGTCTCCACGAAG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>reverse_2070
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------------AGAGTGGTTCA
TGAGCGACG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>forward_1618
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------CC
TACCCATCCTTGCAGCTC--------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------------------------
>reverse_5496
--------------------------------------------------------------------------------
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-------------------------------------------------------ACAGCTTACATCAGCACCGG-----
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
