>input_sequence_52266
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------------------------------------------------ATGTCGTCGACGACGCAGAGCGCGGCCGTGTC
GGCGAAATGCGCGGCGTGGGCGCAGGAGCGGCGGCCGTTCACGCACCCGATCGAGATCCCGGCGGCCTCGGGCGCGCCGG
ACGAGCGGAGGGGCCGCGGCGAGGAGGAGGACGGCGGGGAGGTGGAGCCGCCGCACGTGCTCATGGCGCGGCGCAGGGCG
GCCTCCTCGGTGTGCTCCGGCCAGGGGCGGACGCTCAAGGGCCGGGACCTCACGCGCACGCGCGACTCCGTCCTCCGCAT
GACCGGCTTCATCGAGAGCTAGCCCCTCCTTGCCGCGCGCGCGCGCGCCCGCCTGTCTCGCTCGTGGCCAGCGGCGCGCG
GCCGGGCTCAAGG-------------------------------GTCTTCTTGGGTTGATCCAGTTTG-TGTAGTAGAGT
AAATAAGATAGCTACGGAGCCTAGGGCGG-ATGCCGCTGAATTTTCTTCAATCGGTCTCATTTGTGAATTGGTTGGAATC
GGAAGAGCGAGATGAAATTTAATCCGTTGGTGTAAAACTTATTCTGTTTGTACGCGCGCGCGT--GTGTGTGACATATAC
TACTCCATATGTAAAAAAAAACATATACTTCATATGTAAAAAATAATAAGTACATATGGTCAAAATGCAAATGCAATGTG
GTTT-------------TCCATCTACACATCGCTGACTCGCTGCTGATTCAGTAACTGCGACGCGCGCGCACACTGCACC
GGCATCTATGTGGACACTGGACTCATTCAAACAACTACTGGATCAGCTGTGGGATTACATACATGGGTAACTTCTGAAAA
TCCCCATGCAAGATAATACTAGTGCTAGCATAGGACAAAAATGGCTGGATGGGTAGTTGGGTAATCAGCTTAGAGAGTCC
TAGATATATACCCCATCCAGGCATCCACCATCTAATAATACTACTA------TTAATACGTACT--TACCCTATCCAAAT
ACACACCAACAAAGCTAGCTAGGGGA-----TCAAGTCAAGCAAAGGACGATGCAACGGGAAGAGCAGGAGGGGGAAGAA
TTCCATGAAGCAGACATACTGTGGCCAGAGCCAGATGCAGCCCAGGATCCGGG---------------CTACTCTGACGA
CGACGGCGACGAAGGCCATGACGAGCACTCCGGCGAGTACCGCCGCTTCGC---CCGTCCGGCCAAGGCGCCAAACCGGC
GGAAAGCGTCTTCCCCTATCGACATCCCCGGGAAGACCGGTAAGGCTACTGGTGCAAAGGCGCCGGCTCATCAGGCCGGG
TTGAGCAAGTTCGGCGCGAGCTTTGCGGGCGCCGGCGCCGGCAGCCTGGTGATCGGCAGCCATGTCTTCGTGCCGCCGCA
CGTCAGCGTCGACCGGAGGGCCAAGAGGGACACGGCGATGCTGATGCTCCTCGACGCGCCCAAGGTCGGGAGAGTGAGGG
CGATGGTGATGCTCGACTAA------------------------------------------------------------
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>chr3A_1_TraesCS3A01G283700
AATATCATTTGACGAGCCGTTCACAAGTTCATCGAACCTAGCC-------------------------------------
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-------------------------------------------------------------------------------C
TCTGGACGTCCACTTCCTAACCGTTTTCCGTTGCATGTGAGCATCGTCCTCCTAACTGATGCCACCGTACCAAAGCATG-
--------------GCAGTGAGTGAAGATCAATCGTCCGATAAAGCGGCCCTTTTGATGTTGGCTATGCTAGACACATCG
CTCAGAGCTCTGAGCGATCGAACACCATGCATGCCGCATGTGCCACTGCCAAGTGAAGCAGAGTTTCTGCCGGCGCGTCC
ACCCACAGATCCTGGG------------------------GCGTGCCACGCGTGCAAATCCTTCCCCGGACGTCAGTGTT
ATCCACAAAGGTGCACCTGCACGCCGCACGCAGACACACAGATCAACAACACGTGGGGTATGCCAGACGAGCAACACAGC
CAATCAAGAAACGGTCCGGCCGGTTGGCTTTCCTTGGCGCTGCGACAAAACGCACGATCGCCGCAAATCGCGTCCGGGTT
CATTCAT-CAAGCACCAAAACGATCGATC----AGATCAAAATCAAAATCAGGAGCTAGGTGGAGTGGTCGAGCCTGAAA
GGCAAAGCCAACCGGCCACATCGATCTCCTACTAATTGAGCAACGCGATTACGTGAACGTACGGGGGAATATCAAGTGCC
TTAATTTTGTTGCGTAGCAAGCCAAGCCCAGCCGCCCAAGCCAGGCAGCCACCGGAGCTGGATCGCGGACGGGATTACGG
AATTATTCCTTTCCCTTCCCGTCAAAGCTCAAAACCGCATACTTATCTGTCACACAGGGGCAAGGCGGTGCAGCTCCACA
CGGAACGTGCCTAGCTTAGCTTCGCCTACCTAGGCCGCTGCCTGCCGGGCCCTATAAATCCCTCGCGCCGCGGCGAGCTG
CGGAGGGGATATCTCGGCGAGCTGTCTGTCCGTCCGTCGTGTTGCACAAGCTCTCGTCA-TTGCTCGCCTCATTCACAGC
TAGCTACTTAGCTACGAGCTCGTGCT-------GCCGGCCGGCCGGTCATGTCGTCGACGACGCAGAGCGCGGCCGTGTC
GGCGAAATGCGCGGCGTGGGCGCAGGAGCGGCGGCCGTTCACGCACCCGATCGAGATCCCGGCGGCCTCGGGCGCGCCGG
ACGAGCGGAGGGGCCGCGGCGAGGAGGAGGACGGCGGGGAGGTGGAGCCGCCGCACGTGCTCATGGCGCGGCGCAGGGCG
GCCTCCTCGGTGTGCTCCGGCCAGGGGCGGACGCTCAAGGGCCGGGACCTCACGCGCACGCGCGACTCCGTCCTCCGCAT
GACCGGCTTCATCGAGAGCTAGCCCCTCCTTGCCGCGCGCGCGCGCGCCCGCCTGTCTCGCTCGTGGCCAGCGGCGCGCG
GCCGGGCTCAAGG-------------------------------GTCTTCTTGGGTTGATCCAGTTTG-TGTAGTAGAGT
AAATAAGATAGCTACGGAGCCTAGGGCGG-ATGCCGCTGAATTTTCTTCAATCGGTCTCATTTGTGAATTGGTTGGAATC
GGAAGAGCGAGATGAAATTTAATCCGTTGGTGTAAAACTTATTCTGTTTGTACGCGCGCGCGT--GTGTGTGACATATAC
TACTCCATATGTAAAAAAAAACATATACTTCATATGTAAAAAATAATAAGTACATATGGTCAAAATGCAAATGCAATGTG
GTTT-------------TCCATCTACACATCGCTGACTCGCTGCTGATTCAGTAACTGCGACGCGCGCGCACACTGCACC
GGCATCTATGTGGACACTGGACTCATTCAAACAACTACTGGATCAGCTGTGGGATTACATACATGGGTAACTTCTGAAAA
TCCCCATGCAAGATAATACTAGTGCTAGCATAGGACAAAAATGGCTGGATGGGTAGTTGGGTAATCAGCTTAGAGAGTCC
TAGATATATACCCCATCCAGGCATCCACCATCTAATAATACTACTA------TTAATACGTACT--TACCCTATCCAAAT
ACACACCAACAAAGCTAGCTAGGGGA-----TCAAGTCAAGCAAAGGACGATGCAACGGGAAGAGCAGGAGGGGGAAGAA
TTCCATGAAGCAGACATACTGTGGCCAGAGCCAGATGCAGCCCAGGATCCGGG---------------CTACTCTGACGA
CGACGGCGACGAAGGCCATGACGAGCACTCCGGCGAGTACCGCCGCTTCGC---CCGTCCGGCCAAGGCGCCAAACCGGC
GGAAAGCGTCTTCCCCTATCGACATCCCCGGGAAGACCGGTAAGGCTACTGGTGCAAAGGCGCCGGCTCATCAGGCCGGG
TTGAGCAAGTTCGGCGCGAGCTTTGCGGGCGCCGGCGCCGGCAGCCTGGTGATCGGCAGCCATGTCTTCGTGCCGCCGCA
CGTCAGCGTCGACCGGAGGGCCAAGAGGGACACGGCGATGCTGATGCTCCTCGACGCGCCCAAGGTCGGGAGAGTGAGGG
CGATGGTGATGCTCGACTAATACCGAAAGTTTT--TTTTCCCACCCTACCGAAAGTTTTCGTCGAAAATGTTCGCTTCAT
TTCAAATAATTTTGAGCCATTTTTGTGTAATTGACGTGAAAGCGAGCTCCTCCTACTGTTTACCTCGAAATGGCACAGCG
AGTCATGTAATCCGAATACGTG-----------------------------TAGAAATGCATGCATACGTGGTAACACGT
-------ACGTTTATTTGAAAGGGTAGCCTCCTGCCGGCGCTTATCCGTTCACTGTTTATTTGCACGC-------ATTTT
ATTTTGACATGCGTGTGGGCAGAAGAAGATGGTAGTCATCTGTTTTTTT--TTTCTGTTGAACACGTCATCTGTCAGACA
GTCAATAATACCACCCTTAATAACCGATTAACCTTCATGAGAAGTTAATATTATACTACACGTTATTAACTTGATCCACG
CAAGTTTAACACAGTATCTCTTACTTCCTGAACAAGGAAAACTTTGTGCATGCCCCCGGG------------GAGGAGCA
GTACCATGCTTGGACGCAAAAGGAAAGTAATCCCCCACTCCCAGCGAGAAACAATTAAGTAGTAGAGTGCAAACTTATCC
TTCAAGAATGGAGGAATATATATGCGCGTTGAACATTTCCGATTAAACCTAACCTCTCCCCAGGATTTACAGCTGTTGGA
GGGCAAGCATATACATGGGCGCAAGCAACGGCGAACCCTATATATCATTTCATCTCCTCCGATCCGAAGCATACAATTGG
ACACGTCGTATATAACCTTATCTTCTTCTTCCTCCTC--TCTGCCTTGATTACGTGTGCAAATGCCCTCAAGCAACCTCT
CCTACTCGCCCGGATGTGCACGTCAGTACAGGTGTCTGCATGCCATTGCTGGTGCAGTGCACGAGTTCCTCTCTGGATTT
TGTTGGGTAGCTGGCTTGCGAGCTGTGGCCACTTGC--------ATGAAATGATGAAAGACACTATTCTGTGGCTGACCT
TGTGGTGA---------TCTGGCCAATGGAGATGTGAGCACTCTTCTCCGGTTTCTTG
>chr3B_1
AAAATCATTTGACAAGCCGTTCTCAAGTTCATCGAACCTAGCCCTCTGGACGTCTACTTCCTCACCGTTTCCCGTTGCAT
GTGGGCATCATCCTAGCTGATGCTACCGTACCAAAGTTAAGCTAGATTTTTATTTGGTCAAGTAGTCTAATCACCCCCCC
CTCTAGACATACTTTCGATCCTACAACAAGTCAGAGAGGCGGTAGTGCCGCCGGAGCGGTACTACTGCTCTCACCAGCGG
TACTATCGCGTAGTGTTGAGCGAGCAGGTGAAACAACGGTAGTAGAGACGGATAGTGCGGTAGTGCCGCACGGAGTGGTA
CTACCGCTTGATACTGCCGCTCTACTTCCGCTCGAAGAACAGAGCAGTACAGGAGGCATAAAATAAGCAATAGAGAAACA
ACGGCAGTTCCACCGGAGCGGTGCTTCCGATGCACTGTTAGAAGCCGAGTACATCTGCGGTAGTGGGGTGCTAGTCAGAG
CCACAGTACCTAGGGAGCGGTACTACGGCGTTGAACCACCGCCCAACTACCGCTCATTTACAGAGCACTAAAAATAAGCG
GAAGTGCTAGTAGCACTGAACTGCGGTAGTACAGCTGGAGCGGTACTACCGCTTATATGCCTTAAGTAAGCCCATGCATA
AGATAGGAAAAGCTCCAGTACCGGGAAGGAAAGTGGGTGCAAAAAGACTATGTACGTGCTGATTCCACCCAAGCCTTTTT
GAAGTGGACCCATTCTTAATAGTATGGTGATCCTACGACTCAAATCCATAAAAAATGAAACGCAAGAAAAACAACCGTCT
TCTCTATATATCTCTGAGGGGCACAAATCATCTTGTGCCTATGATAGATTCTCTGAAATGCTCAATGCCACGATTAGTCC
ACAAAAGCATTGTCATCAATCACCAAAACCACCAAGGGAGAAATATGCCCTAACAACATGGCCCCGTTCTTGATTTAACG
TAGGTGCATGGCCCTTGATCGACCCCTGAACAATGGATGTGGCCTCACAAACCCACAACATCTATCTCATCGTCGGACGA
TTCTTCAGACGATGATTAACATATACTATTATTGTAAAGAAAACTCATCCAAGCTGTCGTTATGATCGTTCGGAGTGATG
AATCTGTACCTCACAACCAGGTTAGGCAAACGCCCGGACACCTAGTAGGCGTCAATGGCCACGAGCATGGACCAGTCTCG
ACCGGTGAAGATCCCGTCCTTTCCGGTTCTAGGAGCAGGGTCGTCGAACTTCATGGCCTCCAGTGGTGGCGTGCCGAGGG
GCGGCGATGGCCCCTGAGTAGGGTGCAGGACGCGAGCTACACCTTCAACGACAAAGAGGTGGAAACAACGCCAGTGGTGG
GTGTCGGTGGTGGCTGGGCCTGGGTCGGGGCGCGGGGGTGGCGAAGCGGAAGGAGTGTGGGTGGCGGCGGCGAGGGCGAA
GAGGCCGGGAGGTCGAGCTCGGAGGGTGTTGGGGTGGGTGTTGGCCTATGTGCAACCGAGAGGCGAGCCATGAAAGGATG
GCGCATGCATCCGCAACGTGTCCACACGAACGCAAATCCGGCCAAAATTTAAGCCGGAAACGAATCAAAGTGGACATGAA
AACGGACAATGGTCCGTTTACATCAACGCGTTAGGCCATAGTATTTTCTGCACGAACAAAAACAAACGGACAAAATGGGC
CAGCCCATTGGAGTTGCCAAAAACACGCCGATGCGAAAAATCATTTGACGAGCCGTTTTCAAGTTCATCGAACCTAGCCC
TCTGGACGTCTACTTCCTCACCGTTTCCCGTTGCATGTGGGCA---TCGTCCTAGCTGATGCTACCGTACCAAAGTATAG
CAGTATCCAGTATAGCAGTGAGTGAAGATCAATCTTCCGATAAAGTGGTCCTTTTGATGCTGGCTATGCTACATGCATCG
CTCAGAGC---GACCGAATAAA---CATGCATGATGCATGTGCCACTGCCAAGTGAGGCAGAGTTTCTGCCGGCGCGTCC
ACCCACAGATCCTGGCCTGCT----------------GGCGCGTGCCACGCGTGCAAATCCTTCCCCGGACGTCAGTGTT
ATCCACAAACGTGCACGTGCACGCAGCACGCAGACACAGAGATCAAGAACACGTGGGGTATGCCAGACGAGCAACACAAC
CAATCAAGAAACGGTCTAGCCGGTTGGCTTTCTTGGCA-CTGCGACAAAACGCATGATCGCCGCAAATCACGTCCGGATT
CATCCAAGCAAGCACCAAAACGATCGATCGATGAGATCAAAATCAAAATCAGG----AGGTGGAGTGGTCGAGCCTGAAA
GGCAAAGCCAACCGGCCACACCGA--TCCTACTGATTGAGCAACGCGATTACGTGAACGTACGGGGGAATATGAAGTGCC
TTAATTTTGTTGCGTAGCAA----AGCCCAGCCGCCCAAGCCAGGCGGGCACCGGAGCTGGATCGCGGACGGGATTATGG
AATTATTCCTTTCCCTTCCCGTCAAAGCTCAAAACCGCATACTTATCTGTCACACGGGGGCAAGGCGGTGCAGCTCCACA
CGGAACGTGCCTAGCTTAGCTTCGCCTACCTAGGTAGCTGCCTGCCGGGCCCTATAAATCCCTCGCGCCGCGGCGAGCTG
CGGAGGGAATATCTCGGCGAGCTGTCTGTCCGTCCGTCGTGTTTCACAAGCTCTCGAAATTTGGTCGCCTCATTCACAGC
TAGCTAGCCC----CGCGCTCGTGCT-------GCCTGCCGGCCGGTCATGTCGACGACGACGCAGAGCGCGGCCCTGTC
GGCGAAATGCGCGGCGTGGGCGCAGGAGCGGCGGCCGTTCACGCACCCGATCGAGATCCCGGCGGCCTCCGGCGCGCCGG
ACGAGCGGAGGGGCCGCGGCGAGGAGGAGGACGGCGGGGAGGTGGAGCCGCCGCACGTGCTGATGGCGCGGCGCAGGGCG
GCCTCCTCGGTGTGCTCCGGCCAGGGGCGGACGCTCAAGGGCCGGGACCTCACGCGCACGCGCGACTCCGTCCTCCGCAT
GACCGGCTTCATCGAGAGCTAGCCCGTCCT------------------CCGCCCGTCTCGTTCGTCGCCAACGGCGCGCG
GCCGGGCTCAA-G-------------------------------GTCTTCTTGGGTCGATCCAGTTTG-T---GTAGAGT
AAATAAGATAGCTACGGAGCCTAGGGGCGAATGCCGCTGAATTTTCTTCAATCGGTCCCATTTGTGAATTGGTTGGAATT
GGAAGAGCGAGATGAAATTAAATCCGTTGGTGTAAAACTTATTCTGTTTGTACGCGCGCGCGCGCGTGTGTGACATATAC
TACTCCATATGTAAAAAA-------------------------TAATAAGTACATATGGTCAAAATGCAAATGCAATGTG
GTTTCTTTGTACTGCGCTCCATCTACACATCGCTGAGTCGCTGCTGATTCAGTAACTGCGACGCGCGCGCACACTGCACC
GGCATCTCTGTGGAC-------TCATTCAAACAACTATTGAATCAGCA--------------ATGGGTAAGTTCTGGAAA
TCCCCATGTAAGATAACACCGG-------ATAGGACAAAAATCGCTGGACGGGTTGTTGGGTAATCAGCTTAGAGAGTCC
TAGATATATACCCCATCCA--------CCATGTAATACTACTACTA------TTAATACGTACT--TACCCTATCCAAAA
TACA--CACCAAAGCTAGCTAGGGGGT----TCAAGTCAAGCAAAGGACGATGCAACGGGAAGAGCAGGAGGAGGAAGAA
TTCCATGAAGCAGACATACTGTGGCCAGA------TGCAGCCCAGGATCCGGG---------------CTACTCTGACGA
CGACGGCGACGAAGGCCATGACGAG------------TACCGCCGTCCCGC---CCGTCCGGCCAACGCGCCAAACCGGC
AGAAACCGTCTTCCCCCATCGACATCCCCGGAAAGACCGGTAGGGCTACTGGTGCAAAAGCGCCGGCTCAGCAGGCCGGG
TTCAGCAAGTTCGGCGCGAGCCTTGCGGGCGCCGGCGCCGGCAGCGTGATGATCGGCAGCCAAGTCTTCGTGCCGCCGCA
CGTCATCGTCGATCGGAGGGCCAAGAGGGACATGGCGATGCTGATGCTCGTCGACGCGCCCAAGGTCCGGAGAGTGAGGG
CGATGGTGATGCTCGAGTAGCACCGAAAGTTTTTTTTTTCCTACCGTACCGAAAGTCTTTGGTGGAAATGTTCGTTCCAT
TTCAAATAATTTTGAACCA-TTTTGTGTAATTGACGTGAAAGCGAGCTCCTGCTACTGTTTACCTCGAAATGGTACAGCG
AGTCATGTAATCCGAATACTTCCCCCTAAAAAAATGTAATCCGAATACTTTTAGAAATGCATGTATACGTACGTGGTAAC
ACGTAGGACGTTTATTTGAGAGGGTAGCCTGCTGCTGGTGCTTATCCGTTCACTGCGTGTGGGC----------------
-----------------------AGAAGATGGTAGTCATCTGTTTTTTTCTTTTCTTTTGGACACGTCATCTGTCAGACA
GTCAATAACACCACTCTTAATAGCCGATTAACCTTCATGAGAAGTTAATATTACACA---CGTTATTAACTTCATCCGC-
--------ACACAGTATCTCTTACTTCCTGACCAAGGAAAACT------------CCGGG------------CAGGAGCA
GTACCATGCTTGGACGCAAAAGGAAAGTAATCCCCCACTCCCAGCGAGAAATAATCAA---GTAGAGTGCAAACTTATCC
TTCAAGAAGGGAGGAATATATGT--GCGTTGAACATTTCCAATTAAACCTAACCTCGACCCAAGATTTACAGCTGTTGGA
GGGCAAGCACATACATGGGCGCAAGCAACGGCGAACCATATA--ACATTTCATTTCCTCCGT-----AGCATACAATTGG
ACACGTCGTATATAACCTTATCTTCTTCTCCCTCCTATGTCTCCCTCGATTACGTGTGCAAATGCCCTCAAGTAACCTCT
CCTACTCGTCCGGATGTGCACGTCAGTACAGGTGTCTGCATGCCATTGTTGGTGCAGTGTAGGAGCTCCTCTCTAGATTT
TGTTGGGTAGCTGGCTTGCGAGGTGTGACCACTGGC--------ATGA--------GAGACACTATTCTGTGGCTGACCT
TGTGGTGGTCTGG-----CTGGCCAATGGAGATGTGAGCACTCTTCTCCGGTTTCTTG
>chr3D_1
AAAATCATTTGACGAGCCGTTCACAAGTTCATCGAACCTAGCCCTCTGGACGTCTACTTCCTCACCGTTTCCCGC-----
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-------------------------------TGCATGTGAGCA---TCGTCCTAACTGATGCTACCGTACCAAA------
---------GTATAGCAGTGAGTGAAGATCAATTTTCCGATAAAGCGGTCCTTTTGATGTTGGCTATGCTATACGCATCG
CTCAGAGC---GAGCGATCGAATACCATGCATGAAGCATGTGCCACTGCCAAGTGAAGCAGAGTTTCTGCCGGCGCGTCC
ACCCACAGAATCTGGCCGAGAGCAGCATGGCATCCTCGGCGCGTGCCACGCGTGCAAATCGTTCCCCGGACGTCAGTGTT
ATCCACAAACGTGCACGTGCACGCTGCACGCAGACACACAGACCAAGAACACGTGGGGTATGCCACAGAGGCAACACAAC
CAATCAAGAAACGTGCACGTGCA--------------CGCTGCGACAAAACGCATGATCGCCGCAAATCACGTCCAGGTT
CATTCAAGCAAGCGCCAAAACGAGCGATC----AGATCAAAATCAAAATCAGG----AGGTGGAGTGGTCGAGCCTGAAA
GGCAAAGCCAACCGGCCACACCGA--TCCTACTAATTGAGCAACGCGATTACGTGAACGTACGGGGGAATATGAAGTGCC
TTAATTTTGTTGCGTAGCAA-----GCCCAGCCGCCCAAGCCAGGCAGGCACTGGGGCTGGATCGCGGACGGGATTATGG
AATTATTCCTT-CCCTTCCCGTCAAAGCTCAAAACCGCATACTTATCTGTCACACAAT--------GGTGCAGCTCCACA
CGGAACGTGCCTAGCTTAGCTTCGCCTACCTAGGTAGCTGCCTGCCGGGCCCTATAAATCCCTCGCGCCGCGGCGAGCTG
CGGAGGGAATATCTCGGCGAGCTGTCTGCCTGTCCGTCGTGTTTCGCAAGCTCTCGTCA-TTGGTTGCCTCATTCACAGC
TAGCTAGCCC----CGAGTTCGTCCTTTGCACAGCCGGCCGGCCGGTCATGTCGTCGACGACGCAGAGCGCGGCCCTGTC
GGCGAAATGCGCGGCGTGGGCGCAGGAGCGGCGGCCGTTCACGCACCCGATCGAGATCCCGGCGGCCTCCGGCGCGCCGG
ACGAGCGGAGGGGCCGCGGCGAGGAGGAGGAAGGCGGGGAGGTGGAGCCGCCGCACGTGCTGATGGCGCGGCGCAGGGCG
GCCTCCTCGGTGTGCTCCGGCCAGGGCCGGACGCTCAAGGGCCGGGACCTCACGCGCACGCGCGACTCCGTCCTCCGCAT
GACCGGCTTCATCGAGAGCTAGCCCGTCCTTGCCGCG------------CGCCCATCTTGTTCGCGGCCGACGGCGCGCG
GCCGGGCTGCCCTGCGCGGCTTGCCGGCTGCAGTGATACATGCTGTCTGCTTGGGTCGTTGATCCAGTTT---GTAGAGT
AAATAAGATAGCTACGGAGCATAGGACGA-ATGTCGATGAATTTTCTTCAATCGGTCTCATTTGTGAATTGGTTGGAATT
GGAAGAGCGAGATGAAATTTAATCCGTTGGTGTAAA-CTTACTCTGTGTGTACGTGTGTGTGT--GTCATATAAATATAA
--------------------------------------------------TACATCTGGTCAAAATGCAAATGCAATGTG
GTTTCTTGATACTACGCTCCATCTACACATCGCTGACTCGCTGCTGATTCAGTAACTGCGACGCGCGCGCACCCTGCACC
GGCATCTCTGTGGAC-------TCATTCAAGCAACTACTTGATCAGGTGGT--------TACATGGGTAACTTCTGGAAA
TCCCCATGAAAGATAA-----------------GACAAAAATGGCTGGATGGGTAGTTGGGTAATCAGCTTAGAGAGTCC
TACATATATACCCCATCCA--------CCATGTAATACTACTCTACTACTACTTAATTCGTACTTATACCCTATCCTAAG
TACA--CC---AAGCTAGCTAGGGGGTCAAGTCAAGCCCAGCAAAAGACGATGCTACGGGAAGATCAAGAT---GAAGAA
TTCCATGAAGCAGACATACTGTGGCCAGA------TGCAGCCCAGGATCCCGTGGTAGCTCAGGTGCACTACTCTCAGGA
CGACGGCGATGAAGACGACGACGAG------------TACTCCGGCGAGGACCGCCGTCCGACCAAGGCGCCCAACCGGC
AGAAAGCTTCTTCCCCCATCGACATCCCCGGAAAGACCGGTAGGGCTACTGGTGCAAAAGCGCCGGCTCAGCAGGCCGGG
TTCAGCAAGTTCGGCGCGAGCCTTGCGGGCGCCGGCGGCGCCAGCGTGATGATCGGCAGCCAAGTCTTCGTGCCGCCGCA
CGTCATCGTCGATCGGAGGGCCAAGAGGGACACGGCGATGCTGATGCTCCTCGACGCGCCCAAGGTCGGGAGAGTGAGGG
CGATGGTGATGCTCGAGTAGCACCGAAAGTTTT--TTTTCCCACCCTACCGAAAGTTTTCGTCGGAAATGTTCGCTTCAT
TTCAAATAATTTTGAGTCA-TTTTGTGGAATTGACGTGAAAAAAGCTGAAGGGCTGA-----------------------
----------------------------------------------------AGAAATGCATGTATACGTGGTCACACCT
-------ACGTCTATTTGAAAGAGAATTCTACTCA---TGCTTATCCGTTCACTATCTGTTTTTTTTGGACCACTATCTT
ATTTTCACATACGTGTGGGCACAGAGGAAGATGGCA-----------------------------GTCATCTGTCATACA
GTCAATAATGCCATTCTTAATAGCTGATTAACCTTCATGAGAAGTTAATATTACACT---CGTTATTAACTTGATCCACA
CAAGTTTAACACAGTATCTCTTACTTCCTCGCCAAGGAAAACT------------CTGGGCATGCCCCCGGACAGGAGCA
GTACCATGCTTGGACGCAAAAGGAAAGTAATCCCCCACTCCCAGCGAGAAATAATTAA---GTAGAGTGCAAACTTATCC
TTCAAGAAGGGAGGAATATATGT--GCGTTGAACATTTCCAATTAAACCTAACCTCTCCCCAAGATTTACAGCTGTTGGA
GGGCAAGCATATACATGAGCGCAAGCACCGGCGAACCCTATA--TCATTTCATTTCCTCCGG-----AGCATACAATTGG
ACACGTCGTATATAACCTTATCTTCTTCCTCCTCCTC--TCTCCCTTGATTACGTGTGCAAATGCCCTCAAGCAACCTCT
CCTACTCGTCCGGATGTGCACGTCAGTACAGGTGTCTGCATGCCATTGTTGGTGCAGTGCACGAGTTCCTCTCTGGATTT
TGTTGGGTAGCTGGCTTGCCAGCTGTGACCACTTGCATGAAATGATGA--------AAGACACTATTCTGTGGCTGACCT
TGTGGTGGTGTGGGTGGTCTGGCCAATGGAAATGGGAGCACTCTTCTCCGGTTTCTTG
>SNPs
--S-----------------------------------------------------------------------------
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----------S-------S-------S----------------SSS--S-------------S------------S--S-
----------------------------------S-------------S----------------------S--S-----
--------SSS-----------S----------SS---------------------------------------------
---------------S----------------------------------------------------------------
---------S------S-------S---------------------S-------------------------------S-
----------------SS--------------S-S-S-----------------S--------------S----------
------S----------------------------------------------SSSS-----------------------
--------------------S---SS----------------------------------------------S-------
--------------------SSSS------------------------S----------------------------S--
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----------------------------------SS--------------------------------------------
-------S-----------------------------------S-------------------S----------------
------SSSSSSSS-------------------------------------------------------------S----
---------------------------------------------------------------------S----------
-------------------------------------------------------------S------------------
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-------------------------S-----------SSSSSSSSSSS-----S------S---------S---------
-----------S--------------------------------------------S-------------SSS-------
-------------------------------------------------------------------------------S
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------------------SSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------
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-------S-------SSSSSSS---------------------------SSSSSSSSSS-----------------S---
--------S-------S--SS-SSSSSSS---------------------------------------------------
-------------------SSSSSSSS----S-----S-----------------------------------------S
SSSSSS--S----------------S----------------------------------------------S-------
-----------------------------SSSSSS---------------------------------------------
-------------------------SSSSSSSSSSSS---------SS--------------------------------
S---------------S--------------S----------S---------------S-----------S---------
--S------------------S-----------------------S--S-------------S-----------------
-----S------S-------------------------------------------------------------------
----------------S--SS-------------------------------------------S---------------
-------------------S-------------------------------S---------------------S------
-------------------S-S-----------------------------------------S---------S----S-
------------------------------S----S--S-----------------S-S-----SSSS---------S--
-----S----S----------S----------------------------------S---S-------------------
--------------S-------S------------------------------S---SSS-------------------S
-------------------------------S-----------SSSSSSSSSSSS-----------------S-------
---------------------------------------------------S------SSS-------------------
--------S------------S-SS---------------S---------------------S-----------------
------------------------------------------SS---------S-------SSSSSS-------------
------------------------------------------S-------------------------------------
--------S---------------------------------------S-------------------------------
---------------------------S--------------------SSSSSSSS------------------------
-------S--------------------------------------------------
>forward_1955
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---------------GATCGAACACCATGCATGCC---------------------------------------------
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>reverse_4017
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----------------TATCGACATCCCCGGGAAGA--------------------------------------------
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>forward_2178
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------------------------------------------------------------------------------GC
CAATCAAGAAACGGTCCG--------------------------------------------------------------
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>reverse_4129
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------------------------------------------------GTGATCGGCAGCCATGTCTT------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>forward_3536
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------CACC
GGCATCTATGTGGACA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
>reverse_4904
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GCGCGTTGAACATTTCCGAT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------
