>input_sequence_52154
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-------------------------AACCCGTCCGCTCACAAGCGATTCCATCACCCTCGACTCCACGCGCGCTCTCC--
----CGGCGAGCAACTCCGTCGCCCGCCATGGTTGCCTACGCCCGCCGCTCCAGGGCACCGGGGCGCCCGCACTTCACCC
TCGACGCCCACCCTTGCGAGCAAGAGCTCATCGCGGCGTACCTCGGCCCGCGAGTCACCGACGGCGACATGTCGTGCAAG
TTCATCCACGAAGGCGACGTCTACGCCGCCCACCCTGAGGACCTCACGCAGCAGTACGCCGCGGCCGTCGCCAGCAACGG
CGACGAGGCGTGGTACTTCTTCACCGCCGTGCGGGCCAAAGGCGGCGGCCGCAGGGGGCGCACGGTGGACTCGCAGGAGG
GGTGCTGGCACTCGGAGGCCGGCTCCAAGCCCGTGGTCTCGGCGCACCACCAAGGCGGAGGCCTCCTGGGGCATCGCCAG
AACTTCTCGTTCGTCACCAAGGAGGACGGCGTGCGGGTCCGCTCAGGGTGGCTCATGGTGGAGCTCGGCCTGCACGGCGA
CGGTCAGGACGAGGTCACCCTCTGCAAGGTCTACTTCAGCCCGCGCGCCGCCAAGAACAACAAGAAGCCCGCCGCGTCGT
CGTCCGCGCGCAAGAGGAAGGCCGACGCCGGCAGCCCTGCCCCGGCGCGCCAATGCCGCCGCCGCCGCGAAATGAGCCAG
GACGATCATCCGGTGGAGAAACAAGACGTGAAGGCCGGCAAACAAGAGGGGCTTGTCGAGGAGAGCTCGGCGGACGAGCC
CGGGGTTGTGAATCCGAATGACTTCTTTTGGTGGCTGCGGAACAAGGAGAAGGTGAGGCTGGCATTGGGCATCAGCGAGG
AAGACTTCTACAGCCCCCCATCTGCGGCTGCCTTGGAAAGAAGTTTCGGGCCGGACTGGCCGCCGGCTGCACCACCTTCC
AGCCCCGTCGTTCCCAGCAAGGACAAGCCCGTGGTCATGTGGTTGACGTACGAGGAACTTAACGATCTGCCGGAGGTCAG
AGAGTTCTTGTCGCCCACCAAGTTGCTGGAGGAGATGAGATCGTCAGTCAAGCAACACGAGTAGATCGATTGATGACTAG
---CTACTAGAAAGATGTTTTCGCTTACTCTTTGACTTGCGGTGGATGTCCTTGTTATTGTCCTATAGTAATTCAGTTGA
CGTATACTTAGAGTGGCACTCAGATCCCTGTATCTAAGCAGCCGTTTGGCGCAACACCTGTTTCTATTGAATGGCGATGA
AAATCGTTATATCTT-GCATTTTAAGTACGAGATTACATTTGGATGGTATATTTTTTC-TCCAAACAAACTTTCCCGCTT
T----------------------------ATAAGAGGTGTTCAAAGAAGAATGTTTTTCAACT--CCGGGTGCCCCTACA
CCCTATACGAACAGTAAATTTATATAAAAAAATGGAAAATT-AAA-----------------------------------
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>chr3D_1_TraesCS3D01G243900
AGGGAAATCCAAATCAAATACTAAATGCAGCTATGTAGTTTCTGGTTTTTCAATAGTGAAATTTCCCGAGTGAAAGAAGG
ATTTTTACATTGATTTTAGTTCGGCAGCTACTTAATGATAGGCTTTTAAAAAAATCGAACCAAATTCATATTGCTGCTCG
ACTAACAGTTGTACAAACGTTCATGCACATATTTAGCTAGTCGCTACACAGAAACGATAAAGGAATAGTTGATCCTGCAA
AATACATGTATTTTTAAGAATATGCCAAAAAAAAATATCACTACACATAAATGATGAAGGAATTGTTGATCCTGTACAGT
ATAGTAGTCATGGGTGGAACTTGGACTTACTGTGATTGAAACTTTTTGGTGCCACATGCAGGCTTCACTTGCTGCAATTG
CCATGTTGCTTGGTGCCACAAAAGGAGCAGAGGTGTGGTGAGCTGGATTTGATCATCGGCGGTTTGCTTATAATATA--T
ACATATGTTCATTCTCCCTCTACTCTGTCGGGTATTCTGATTTGTACATGTATGCGTAGAAAAGATATAATGGAAGGAGA
CTGGTTCACTATCATATGTGTTGTATGACCTATAATCGTAGAATGATAGTATTTGTCTTCCGGAAAAAAAAGTGTGCCTG
TAGCTCTCGCGACTAGTATTGTGTTGATTTT-------------------------------GGTTGTTTC-------CC
TGCATTGGTGGGTTTTCAAGGACGGCCGTCGCTAGTTGAGTATATTGGGCTTTCCAT-----ATTGTTCGCAAGCGCAGT
AA----GGAAACTGAAAAACGGAAAACCGCGTGCTGTTGACATGGACTAG--CATCTGCGT----------AGCCCAAAC
GCCCAAATATGGAAGGACCTTGTGGGGC---CTGGGATCTTGGTAGCAGACACGAACTCGGTCGCACGCGTCACCGTAAT
GATTACTCACAACTCGAGTCTAATTCAGAATCCGAGCAGCAGGCGTGATCGGCCGTAGGTGGATACACAGTATATATGTC
GG-CGAGCGATCGTCCGTTGATTCCAACCCGTCCGCTCACAAGCGATTCCATCACCCTCGACTCCACGCGCGCTCTCC--
----CGGCGAGCAACTCCGTCGCCCGCCATGGTTGCCTACGCCCGCCGCTCCAGGGCACCGGGGCGCCCGCACTTCACCC
TCGACGCCCACCCTTGCGAGCAAGAGCTCATCGCGGCGTACCTCGGCCCGCGAGTCACCGACGGCGACATGTCGTGCAAG
TTCATCCACGAAGGCGACGTCTACGCCGCCCACCCTGAGGACCTCACGCAGCAGTACGCCGCGGCCGTCGCCAGCAACGG
CGACGAGGCGTGGTACTTCTTCACCGCCGTGCGGGCCAAAGGCGGCGGCCGCAGGGGGCGCACGGTGGACTCGCAGGAGG
GGTGCTGGCACTCGGAGGCCGGCTCCAAGCCCGTGGTCTCGGCGCACCACCAAGGCGGAGGCCTCCTGGGGCATCGCCAG
AACTTCTCGTTCGTCACCAAGGAGGACGGCGTGCGGGTCCGCTCAGGGTGGCTCATGGTGGAGCTCGGCCTGCACGGCGA
CGGTCAGGACGAGGTCACCCTCTGCAAGGTCTACTTCAGCCCGCGCGCCGCCAAGAACAACAAGAAGCCCGCCGCGTCGT
CGTCCGCGCGCAAGAGGAAGGCCGACGCCGGCAGCCCTGCCCCGGCGCGCCAATGCCGCCGCCGCCGCGAAATGAGCCAG
GACGATCATCCGGTGGAGAAACAAGACGTGAAGGCCGGCAAACAAGAGGGGCTTGTCGAGGAGAGCTCGGCGGACGAGCC
CGGGGTTGTGAATCCGAATGACTTCTTTTGGTGGCTGCGGAACAAGGAGAAGGTGAGGCTGGCATTGGGCATCAGCGAGG
AAGACTTCTACAGCCCCCCATCTGCGGCTGCCTTGGAAAGAAGTTTCGGGCCGGACTGGCCGCCGGCTGCACCACCTTCC
AGCCCCGTCGTTCCCAGCAAGGACAAGCCCGTGGTCATGTGGTTGACGTACGAGGAACTTAACGATCTGCCGGAGGTCAG
AGAGTTCTTGTCGCCCACCAAGTTGCTGGAGGAGATGAGATCGTCAGTCAAGCAACACGAGTAGATCGATTGATGACTAG
---CTACTAGAAAGATGTTTTCGCTTACTCTTTGACTTGCGGTGGATGTCCTTGTTATTGTCCTATAGTAATTCAGTTGA
CGTATACTTAGAGTGGCACTCAGATCCCTGTATCTAAGCAGCCGTTTGGCGCAACACCTGTTTCTATTGAATGGCGATGA
AAATCGTTATATCTT-GCATTTTAAGTACGAGATTACATTTGGATGGTATATTTTTTC-TCCAAACAAACTTTCCCGCTT
T----------------------------ATAAGAGGTGTTCAAAGAAGAATGTTTTTCAACT--CCGGGTGCCCCTACA
CCCTATACGAACAGTAAATTTATATAAAAAAATGGAAAATT-AAAAATCTATAATTTCGTGGCATCAAATATGCTCAAAC
TTTGTAGGTGCCTGCAAGATTTCATGGCAAATTTCACACACACACAAAAAAAGATTTCATGACAAAAAACATTCTATGAT
GTCTACACAAGAAAAAGATTTCAGTGCTTAAAGTTTGGGTCTCGATAACTGTCACACGTGTGGTGTATCGGGTGGTTGTG
CCGCACGCCTCGTGTGGCATGGATAGGAACCCGCCCGCACGACCGCGTCTGGGCGCGCAAAGCCACAGCCCGCACGTTCG
GTGTGCGGCGCGATCG-CCCGCATGAGCTCGTCCGGGCGAGCGACCACGCGGCCCGCACGACCTGTCTCGGCCGTCGCCC
CTCCCCGCCTGCGAGCCACACGCCCCGCGTCGCAGTAACCACGCGT-C-CCGCCGCGATTGCTATGGTCCGGACCCTCTT
CCATGTACGTGTAACTGCAGTTGCCATGTCGCTGAACTGCAGTTGCCATGTCGGACAACTGCAGTTGCCATGTCGCTGAA
CTGCAATTGCCA--------------------------------------------------------------------
-------------------------------------------------------------------TGTCAGTCAACTG
CAGTTGCCATGGTTGCTCGTAACTCCA--------------------------------------------GTTGCCATG
TCGCTGAACTGCAGTTGCCATGTCGGACAACTGCAGTTGCCATGTCGCTGAACTGTAGTTGCCATGTTGGACAACTGCAG
TTGCCATGGTTGCTCAACTGCAGTTGCCATCTCAGGTCAAGTGCCGGATGCCATTTTTGGGCAACTGCAGCTGTTGCCAT
GTATGGTCTGGTCTACTACAGTTGCCATGATTTGAAAACTTTAGGAGTTGCCACCTACTAACACTAGACAGTTGCCATGT
AGCACTAAAAAAACATGGCAAAAACATGTTTCGGGTAAAGAGAGAGTTGCCATCTACTTACAAGCATGCTAGAGGCAGTT
GACATGTACCCTGCAAAAACACATGGC-AACTGATAGCTTTTGAT-TGTGGGAGAGGAAACGGGCATGTGGGCGATGGTG
GTATCTTTAGGAGTTGCCACCTACTAACA
>chr3A_266
CAAAATACATATAC------------------------------------------------------------------
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--------------------------------------CACTACACATAAGCGATGAAGGATTTGTTGATCCTGTACAAT
ATAGTAGTCATGGGAGGAACTTGGACTTACTGTGATTGA-ACTTTTTGGTGCCACATGCAGGCTTCACTTGCTGCAATTG
CCATGTTGCTTGGTGCCACAAAAGGAGCGGAGGTGTGGTGAGCTGGATGTGATTATCATCGATTTGCTTATAATAGTACT
ACATATGTTCATTCTCCCTCTACTCTATCGGGTATTCTGATTTGTACATGTATGCGTAGAAAAGATATAATGGAAGGAGA
TTGGTTCACTATCATATGTGCTGTATGACATATAATCGTAGAATGATAGTATTTGTCTTCCGGTAAAAAA--TGTGCCTG
TAGCTCCCGCGACTAGTATTGTGTTGATTTTCTTTTTGCGGGGTTAGTATTGTGTTGATTTTGGTTGTTTTCTTAT--CC
TGCATTGGTGGGCTTTCAAGGACGGCCGTCGCTACTTGAGTATACTGGGCATTCCAT-----GTTGTTCACGAGCTCAGT
AAATAAGGAAAGTGAAAAACGGAAAACCGCGTGCTGTTGACATGGACAAACACATCTGCCTAGCCTAGCCCAGCCCAAGC
ACCCAAATATGGAAACCTT----GTGGGGCCCTGGGATCCGGGTAGCAGACACGAACTCGGTCGCACGCGTCACCGTAAT
GATTACTCACAACTCGAGTCTAATTCAGAATCCGAGCAGCAGGCGTGATCGCCCGTAGGTGGATACACAGTATATATGTG
TGACGAGCGATCGTCCGTCGATTCCAACCCGTCCGCTCACAAGCGATTCCATCACCCTCGACTCCACGCGCGCTCTCTCG
GCGTCGGCGAGCAACTCCGTCGCCCGCCATGGTTGCCCACGGCCGCCGCTCCAGGGCGCCGGGGCGCCCGCACTTCGCCC
TCGACGCCCACCCCTGCGAGCAAGAGCTCATCGCGGCGTACCTCGGCCCGCGAGTCACCGACGGCGACATGTCGTGCAAG
TTCATCCACGAAGGCGACGTCTACGCCGCCCACCCTGAGGACCTCACGCAGCAGTACGCCGCGGCCGTCTCCAGCAACGG
CGACGAGGCGTGGTACTTCTTCACCGCCGTGCGGGCCAAAGGCGGCGGCCGCAGGGGGCGCACGGTGGACTCCCAGGAGG
GGTGCTGGCACTCCGAGGCCGGCTCCAAGCCCGTGGTCTCGGCGCACCACCACGGCGGAGGCCTCCTGGGCCATCGCCAG
AACTTCTCGTTCGTCACCAAGGAGGACGGTGTGCGGGTCCGCTCCGGGTGGCTCATGGTGGAGCTCGGCCTGCACGGCGA
CGGCCAGGACGAGGTCACCCTCTGCAAGGTCTACTTCAGCCCGCGCGCCGCCAAGAACAACAAGGAACCCGCCGCGTCGT
CGTCCGCGCGCAAGAGGAAGGCCGACGCCGACAGCCCTGCCCCGGCGCGCCAATACCGCCGCCGCCGCGAAATGAACCAG
GACGATCACCCGGTGGAGAAACAAGACGTGGAGGCCGGCGAACAAGAGGGGCTCGTCGAGGAGAGCTCGGCGGACGAGCA
TGAGGCTGTGGATCCGAATGACTTCTTTTGGTGGCTGCGGAACAAGGAGAAGGTGAGGCTGGCATTGGGCATCAGCGAGG
AAGACTTCTACAGCCCCCCATCTGCGGCTGCCTTGGAAAGAAGCTTCGGGCCGGACTGGCCGCCGGCTGCACCACCTTCC
AGCCCCGTCGTTCCCAACGAGGACAAGCCCGTGGTCATGTGGTTGACGTACGAGGAGCTTAACGATCTGCCGGAGGTCAG
AGAGTTCTTGTCGCCCACCAGGTTGCTGGAGGAGATGAGATCGTCTGTCAAGCAACACGAATAGATCGATTGATGACTAG
---CTGCTAGAAGGATGTTTTCGCTTGCTCTTTGACTTGAGGTGGATGGCCTTGTTATTGTCC-----TAATTCAGTTGA
CGTATACTTA-AGTGCCACTCAGATCCCTGTATCGAAGCAGCCGTTTGGCGCAACACCTGTTTTTATTGAATGGCGATGA
AAATCGTTATATCTTTGCATTTTAAGTACGACATCACATTTGGATGGTATTTTTTCTC-TCGAAACAAACTTTCACCCCG
CTTTATAGACAAAGCCACACGGCCAAACGATAAGAAGTGTTAAAAGAAGAGTGTTTCTTCAACTCCCGGGTGTCCCTACA
CCCTATACGAACAGTAAATTTATAAAAGAAAATGGAAAATAAAAAAATCTATAATTTCGTGGCATCAA---TGCTCAAAC
TTTGTAGGTGCTTGCAAGATTTCATGACAAATTT--------CACAAAAAAAGATTTCATGACAAAAAACATTCTATGAT
GTCTACACAAGAAAAAGATTTCAGTGCTTAAAGTTT--------------------------------------------
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>chr3B_332
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-----------GGGAGGAACTTGGAGTAACTGTGATTG-AACTTTTTGGTGCCACATGCAGGCTTCACTTGCTGCAATTG
CCATGTTGCTTGGTGCCACAAAAGGAGCAGAGGTGTGGTGAGCTGGCTTTGATCATCGTCGGTTTGCTTATAA------T
ACATATGTTCGTTCTCCCTCTACTCTGTCGGGTATTCTGATTTGTACATGTATGCGTAGAAAAGATATAATGGAAGAAGA
CTGGTTCACTATCATATGTGTTGTATGACCTATAATCGTAGAATGATAGTATTTGTCTTCCGGTAAAAAAAGTGTGCCTG
TTGCTCTCGCGACTAGTATTGTGTTGATTTT-------------------------------GGTTGTTTTCATACACCC
TGTATTGGTGGGTTTACAAGGACGGCCGTCGCTAGTTGAGTATACTGGGCATTCCATTCCATATTGTTCGCAAGCTCAGT
AAATAAGGAAAGTGAAAAACGGAAAACCGCGTGCTGCTGACATGGACAAGCACATCTGCGT----------AGCCCAAAC
GCCCAGATATGGAAACCTA----GGGGG---CTGGGATCCGGGTAACAGACACGAACTCGGTCGCACGCGTCACCGTAAT
GATTACTCGCAACTCGAGTCTAATTCAGAATCCGAGCAGCAGGCGTGATCGCCCGTAGGTGGATACA--GTATATATGTG
TGACGAGCGACCGTCCGTCGATTCCAACCCGTCCGCTCACAAGCGATTCCATCACCCTCGACTCCACGCGCGCTCTCC--
----CGGCGAGCAACTCCGTCACCTGCCATGGTTGCCTACGCCCGCCGCTCCAGGGCGCCGGGGCGCCCGCACTTCGCCC
TCGACGCCCACCCTTGCGAGCAAGAGCTCATCGCGGCGTACCTTGGCCCGCGAGTCACCGAGGGCGACATGTCGTGCAAG
TTCATCCACGAAGGCGACGTCTACGCCGCCCACCCTGAGGACCTCACGCAGCAGTACGCCGCGGCCGTCGCCAGCAACGG
CGACGAGGCGTGGTACTTCTTCACCGCCGTGCGGGCCAAAGGCGGCGGCCGCAGGGGGCGCACGGTGGACTCCCAGGAGG
GGTGCTGGCACTCCGAGGCCGGCTCCAAGCCCGAGGTCTCGGCGCACCACCACGGCGGAGGCCTCCTGGGGCATCGCCAG
AACTTCTCGTTCGTCACCAAGGAGGACGGCGTGCGGGTCCGCTCAGGGTGGCTCATGGTGGAGCTCGGCCTGCACGGCGA
CGGCCAGGACGAGGTCACCCTCTGCAAGGTCTACTTCAGCCCGCGCGCCGCCAAGAACAACAAGAAACCCGCCGCGTCGT
CGTCCGCGCGCAAGAGGAAGGCCGACGCCGGCAGCCCTGCCCCGGCGCGCCAATGCCGCCGCCGCCGTGAAATGAACCAG
GATGATCATCCGGTGGAGAAACAAGCCGTGAAGGCCGGCAAACAAGAGGGGTTTGTCGAGGAGAGCTCGGCGGACGAGCC
CGAGGTTGTGGATCCGAATGACTTCTTTTGGTGGGTGCGGAACAAGGAGAAGCTGAGGCTGGCATTGGGCATCAGCGAGG
AAGACTTCTACCGGCCCCCATCTGCGGCTGCCTTGGAAAGAAGTTTCGGGCCGGACTGGCCGCCGGCTGCACCACCTTCC
AGCCCCGTCGTTCCCAACGAGGACAAGCCCGTGGTCATGTGGTTGACGTACGAGGAACTGCACGGTCTGCCGGAGGTCAG
AGAGTTCTTGTCGCCCACCAAGTTGCTGGAGGAGATGAGATCGTCTGTCAAGCAACACGAGTAGATCGATTGATGACTAG
TAGCTGCTAGAAAGATGTTTTCGCTTACTCTTTGAGTTGAGGTGGATGTCCTTGTTATTGTCC-----TAATTAATTCGA
CGTATACTTAGAGTGCCACTCAGATCCCTGTGTCTAAGCAGCCGTTTGGCGCAACACCTGTTTTTACTGAATGGCGATGA
AAATCGTTATATCTT-GCATTTTAAGTA--------CATTTGGATGGTATATTTTTTTATCGAAACAAATTTTCATCCCG
CTTTATATGCAAAGCCACACGACCAAACGATAAGAGGTGTTCAAAGAAGAGTGTTTTTCAACT--CCGGGTGTCCCTACA
CCCTATACAAACAGTAAATTTATAAAAAAATGGAAAA---T-AAAAATCTTTAATTTCGTGGCATCAAATATGCTCAAAC
TTTGTAGGTACTTGCGAGATTTCATGACAAATTTCA------CAAAAAAAGAGATTTCATGACAAAAAGCATTCTATGAT
GTCTACACAAGAAAAAGATTTCAGTGTTTAAAGTT---------------------------------------------
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>chr7D_2561
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---------------------------TTAAAATTTGGACGTCGATAACTGCCACACGTGTGGCATCTAGGGGGTATCTG
CCGCACGCCCCGTGTAGCATCGACACAGGCCCGTCCGCACGAGCACGTCCGGGCGCACCCCGCCACAGCCCGCACGTTCG
GTGTGCGGCGTGATCG-CCCGCATGAGCATGTCCGGGCGAGCGACCACGCGGCCCGCACGACCCGTCTCGGCCGTCGCCC
CTCCCCGCCTGCGAGCCACACGCCCCGCGTGGCAGTAACCACGCGT-C-CCGCCGCGATTGCTATGGTCCGGACCCTCTT
CCATGTACGTGTAACTCCAGTTGCCATGTCGCTGAACTGCAGTTGCCATGTCGGACAACTGCAGTTGCCATG--------
------------------------------------GTTGCTCGTAACTCCAGTTGCG----------------------
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-------------------ATGTCGGACAACTGCAGTTGCCATGTCGCTGAACTACAGTTGCCATGTCGGATAACTGCAG
TTGCCATGGTTGCTCAACTGCAGTTGCCATCTCAGGTCAAGTGCCGGATGCC-TTTTTGGGCGACTGCAGCTGTTGCCAT
GTATGGTCTGGTCTACTACAGTTGCCATGATTTGAAAACTTTAGGAGTTGCCACCTACTAACACTAGACAGTTGCCATGT
AGCACTAC-AAAACATGGCAAAAAACATGTCCGGGGTAAAAGAGAGTTGCGATATGCTTACAAGCACACTAG-GGCAGTT
GCCATGTACCCTACAAAAACACATGGC-AACTGATAGCTTTTGGTGTGTGGGAGAGGAGACGGGCATGTGGACTACGGTG
GTATCTTTAGGAGTTGCCACCTACTAACA
>chr3D_2565
AGTTTA--------------------------------------------------------------------------
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------------------------------------GGACGTCGATAACTGCCACACGTGTGGCATCTAGGGGGTATCTG
CCGCACGCCCCGTGGGGCATCGACACAGGCCTGCCCGCACGAGCACGTCCGGGCGCACCCCGCCACAGCCCGCACGTTCG
GTTTTCGGCGCGATCG-CCCGCATGAGCACGTCCGGGCGAGCGACCACGCGGCCCGCACAACCCGTCTCGGCCATCGCCC
CTCCCCGCCTGCGAGCCACACGCCCCGCGTGGCAGTAACCACGCGT-C-CCGCCGCGATTGCTATGGTCCGGACCCTGTT
CCATGTACGTGTAACTCCAGTTGCCATGTCGCTGAACTGCAGTTGCCATGTCGGACAACTGCAGTTGCCATGTCGCTGAA
CTACAGTTGCCA--------------------------------------------------------------------
-------------------------------------------------------------------TGTCGGACAACTA
CAGTTGCCATGGTTGCTCGTAACTCCAGTTGCCATGTCGCTGAACTGCAGTTGCCATGTCGGACAACTGCAGTTGCCATG
TCGCTGAACTG------------------------------------------------------------------CAG
TTGCCATGGTTGCTCAACTACAGTTGCCATCTCAGGTCAAGTGCCGGATGCCATTTTCGGGCAACTGCAGCTGTTGCCAT
GTATGGTCTGGTCTACTACAGTTGCCATGATTTGAAAACTTTAGGAGTTGCCACCTACTAACACTAGACAGTTGCCATGT
AGCACTAC-AAAACATGGCAAAAAACATGTCCGGGGTAAAAGAGAGTTGCCATATGCTTACAAGCACACTAG-GGCAGTT
GCCATGTACCCTACAAAAACACATGGCAAACTAATAGCTTTTGGTGTGTGGGAGAGGAGACGGGCATGTGGACTACGGTG
ATATCTTTAGGAGTTGCCACCTACTAACA
>chr3D_2567
TTTAGG--------------------------------------------------------------------------
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--------------------------------------GTCCCGATAACTGCCACACGTGTGGTGTATCGGGTGGTTGTG
CCGCACGCCTCGTGTGGCATGGATAGGAACCCGCCCGCATGACCGCGTCCGGGCGCGCAAAGCCACAGCCCGCACGTCCG
GTGCA--GCGCGATCGCCCCGCACGAGCACGTCCGGGCGAGCGAGCGCGCGGCCCGCACGACCCGTCTCGGCCGTCGCCC
CTCCCCGCCTGCGAGCCACACGCCCCGCGTGTCAGTAACCACGCGT-C-CCGCCGCGATTGCTATGGTCCGGACCCTCTT
CCATGTACGTGTAACTCCAGTTGCCATGTCGCTGAACTGCAGTTGCCATGTCGTACAACTGCAGTTGTCATG--------
--------------------------------------------------------------------------------
-----------------------------------------------TCGCTGAACTACAGTTGCCGTGTCGGACAACTA
CAGTTGCCATGGTTGCTCGTAACTCCA--------------------------------------------GTTGCCATG
TCGCTGAACTG------------------------------------------------------------------CAG
TTGCCATGGTTGCTCGACTGCAGTTGCCATCTCAGGTTAAGTGCCGGATGCCATTTTTGGGCAACTGCAGCTGTTGCCAT
GTATGGTCTGGTCTACTACAGTTGCCAT----------------------------------------------------
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>chr7D_2567
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---------------------------------TTTGGGTGCCGATAACTGCCACACGTGTGGTGTATCGGGTGGTTGTG
CCGCACGCCTCGTGTGGCATGGTTAGGAACCCGCCCGCACGACCGCGTCCGGGCGCGCAAAGTCACAGCCCACACGTTCG
GTGTGCGGCGCGATCG-CCCGCATGAGCTCGTCCGGGCGAGCGACCACGCGGCCCGCACGACCCGTCTCGGCCGTCGCCC
CTCCCCGCCTGCGAGCCACACGCCCCGCGTCGCAGTAACCACGCGT-C-CCGCCGCGATTGCTATGGTCCGGACCCTCTT
CCATGTACGTGTAACTCCAGTTGCCATGTCGCTGAACTGCAGTTGCCATGTCGGACAACTGCAGTGGCCATG--------
--------------------------------------------------------------------------------
-----------------------------------------------TCGGAC---------------------------
--------------------------------------------------------------------------------
------AACTG------------------------------------------------------------------CAG
TTGCCATGGTTGCTCAACTGCAGTTGCCATCTCAGGTCAAGTGCCGGATGCCATTTTTGGGCAACTGCAGCTGTTGCCAT
GTATGGTCTGGTCTACTACAGTTGCCATGATTTGAAAACTTTAGGAGTTGCCACCTACTAACACTAGACAGTTGCCATGT
AGCACTAAAAAAACATGGCAAAAACATGTTTCGGGTAAAGAGAGAGTTGCCATCTGCTTACAAGCACGCTAGAGGCAGTT
GACATGTACCCTGCAAAAACACATGAC-AACTGATAGCTTTTGGT-TGTGGGAGAGGAGACGGGCATGTGGGCGATGGTG
GTATCTTTAGGAGTTGCCACCTACTAACA
>chr5D_2570
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------------------------------------GGGTCCCGATAACTGCCACACGTGTGGTGTATTGGGTGGTTGTG
CCGCACGCCTCGTGTGGCATGGATAGGAACCCGCCCGCACGACCGCGTCCGGGCGCGCAAAGCCACAACCCGCACGTTCG
GTGTGCCGCGCGATCG-CCCGCATGAGCTCGTCCGGGCGAGCGACCACGCGGCCCGCACGACCCGTCTCGGCCGTCGCCC
CTCCCCGCCTGCGAGCCACACGCCCCGCGTCGCAGTAACCACGCGT-C-C-GCCGCGATTGCTATGGTCCAGACCCTCTT
CCATGTGCGTGTAACTCCAGTTGCCATGTCGCTGAACTGCAGTTGCCATGTCGGACAACTGCAGTTGCCATGTCGCTGAA
CTACAGTTGCCATGTCGGACAACTACAATTGCCATGGTTGCTCGTAACTCCAGTTGCCATGTCGCTGAACTGCAGTTGCC
ATGTCGGACAACTGCAGTTGCCATGTCGCTGAACTACAGTTGCCATGTCGGAC---------------------------
--------------------------------------------------------------------------------
------AACTG------------------------------------------------------------------CAG
TTGCCATGGTTGCTCAACTGCAGTTGCCATCTCAGGTCAAGTGTCGGATGCCATTTTTGGGCAACTACAGTTGTTGCCAT
GTATGGTCTGGTCTACTACAGTTGCCATGATTTGAAAACTTTAGGAGTTGCCACCTACTAACACTAGACAGTTGCCATGT
AGCACTAAAAAAACATGGCAAAAACATGTTTCGGGTAAAGAGAGAGTTGCCATCTGCTTACAAGCACGCTAGAGGCAGTT
GACATGTACCCTGCAAAAACACATGGC-AACTGATAGCTTTTGGT-TGTGGGAGAGGAGACGGGCATGTGGGCGATGGTG
GTATCTTTAGGAGTTGCCACCTACTAACA
>chr4D_2575
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-----------------------------------------TCGATAACTGCCACACGTGTGGCATCTAGGGGGGATCTG
CCGCACGCCTCGTGTGGCATCGACACAGGCCCGCCCGCACGAGCACGTCCGGGCGCACCCTGCCACAGCTCGCACGTTCG
GTGTGCGGCGCGATCG-CCCGCATGAGCACGTCCGGGCGAGCGACCACGCGGCCCGCACGACCCGTCTCGGTCGTCGCCC
CTCCCCGCCTGCGAGCCACACGCGCCGCGTGGCAGTAACCACGCGTCC-C-GCCGCGATTGCTATGGTCCGGACCCTCTT
CCATGTACGTGTAACTCCAGTTGCCATGTCGCTGAACTGCAGTTGCCATGTCGGACAACTGCAGTTGCCATGTCGCTGAA
CTACAGTTGCCATGTCGGACAACTACAGTTGCAATGGTTGCTCGTAACTCCAGTTGCCATGTCGCTGAACTGCAGTTGCC
ATGTCGGACAACTGCAGTTGCCATGTCGCTGAACTGCAGTTGCCATGTCGGAC---------------------------
--------------------------------------------------------------------------------
------AACTG------------------------------------------------------------------TAG
TTTCCATGGTTGCTCAACTGCAGTTGCCATCTCAGGTCAAGTGCCGGATGCCATTTTTGGGCAACTGCAGCTGTTGCCAT
GTATGGTCTGGTCTACTACAGTTGCCATGATTTGAAAACTTTAGGAGTTGCCACCTACTAACACTAGACAGTTGCCATGT
AGCACTAC-AAAACATGGCAAAAAACATGTCCGGGGTGAAAGAGAGTTGCCATATGCTTACAAGCACACTAG-GGCAGTT
GCCATATACCCTAAAAAAACACATGGC-AACTGATAGCTTTTGGTGTGTGGGAGAGGAGACGGGCATGTGGACTACGGTG
GTATCGTTAGGAGTTGCCACCTACTAACA
>chr2D_2575
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-----------------------------------------TCGATAACTGCCACACGTGTGGCATCTAGGGGGTATCTG
CCGCACGCCCCGTGTGGCATCGACACAGGCCCGCCCGCACGAGCACGTCCGGGCGCACCCCGCCACAGCCCGCACGTTCG
GTGTGCGGCGCGATCG-CCCGCATGAGCACATCCGGGCAAGCGACCACGCGGCCCGCACGACCCGTCTCGGCCGTCGCCC
CTCCCCGCCTGCGAGCCACACGCCCCGCGTGGCAGTAACCACGCGTCCGC-GCCACGATTGCTATGGCCCGGACCCTCTT
CCATGTACGTGTAACTCCAGTTGCCATGTCGCTGAACTACAGTTGCCATGTCGGACAACTGCAGTTGCCATGTCGCTGAA
CTACAGTTGCCATGTTGGACAACTACAGTTG-CATGGTTGCTCGTAACTCCAGTTGCCATGTCGCTGAACTGCAGTTGCC
ATGTCGGACAACTGCAGTTACCATGTCGCTGAACTGTAGTTGCCATGTCGGAC---------------------------
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------AACTG------------------------------------------------------------------TAG
TTGCCATGGTTGCTCAACTGCAGTTGCCATCTCAGGTCAAGTGCCGGATGCCATTTCTGGGCAACTGCAGCTGTTGCCAT
GTATGGTCTGGTCTACTACAGTTGCCATGATTTAAAAATTTT-GGAGTTGCCACCTACTAACACTAGACAGTTGCCATGT
AGCACTAC-AAAACATGGCAAAAAACATGTCCGGGGTAAAAGAGAGTTGCCATATGCTTACAAGCACACTAG-GGCAGTC
GTCATGTACCCTACAAAAACACATGGC-AACTGATAGCTTTTGGTGTGCGGGAGAGGAGATGGGCATGTGGACTACGGTG
GTATCTTTAGGAGTTGCCACCTACTAACA
>chr2D_2575
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-----------------------------------------TCGATAACTGCTACACGTGTGGCATCTAGGGGGTATCTG
CCGCACGCCCCGTGTGGCATCGACACAGGCCCGCCCGCACGAGCACGTCCGGGCGCACCCCGCCACACCCCGCACGTTCG
GTGTGCGGCGCGATCG-CCCGCATGAGCACGTCCGGGCGAGCGACCACGCGGCCCGCACGACCCGTCTCGGCCGTCGCCC
CTCCCCGCCTGCGAGCCACACGTCCCGCGTGGCAGTAACCACGCGTCC-C-GCCGCGATTGCTATGGTCCGGACCCTCTT
CCATGTATGTGTAACTCCAGTTGCCATGTCGCTGAACTGCAGTTGCCATGTT----------------------GCTGAA
CTACAGTTGCCATGTCGGACAACTACAGTTGCCATGGTTGCTCGTAACTCCAGTTGCCATGTCGCTGAACTACAGTTGCC
ATGTCGGACAACTGCAGTCGCCATGTTGCTGAACTGCAGTTGCCATGTCGGAC---------------------------
--------------------------------------------------------------------------------
------AACTG------------------------------------------------------------------CAG
TTGCCATGGTTGCTCAACTGCAGTTGCCATCTCAGGTCAAGTGCCGGATGCCATTTTTGGGCAACTGCAGCTGTTGCCAT
GTATGGTCTGGTCTACTACAGTTGCCATGATTTAAAAACTTTAGAAGTTTCCACCTACTAACACTAGGCTGTTGCCATGT
AGCACTAC-AAAACATGGCAAAAACCATGTCCGGGGTAAAAGAGAGTTGCCATATGCTTACAAGCACACTAG-GGCAGTT
GCCATGTACCCTACAAAAACACATGGC-AACTGATAGCTTTTGGTGTGTGGGAGAGGAGATGGGCATGTGGACTACGGTG
GTATCTTTAGGAGTTGCCACCTACTAACA
>chr1D_2575
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-----------------------------------------TCGATAACTGCCACACGTGTGGCATCTAGGGGGTATCCG
CCGCACGCCTCGTGTGGCATCGACACAGGTCCGCCCTCACGAGCACATCCGGGCGCACCCCGCCACAGCCCGAACGTTCG
GCGTGCGGCGCGATCG-CCCGCATGAGCACGTCCGGGCGAGCGACCACGCGGCCCGCACGACCCGTCTCGACCGCCGCCC
CTCCCCGCCTGCGAGCCACACGCCCCGCGTGGCAGTAACCACGCGTCC-C-GCCGCAATTGCTATGGTCCGGACCCTCTT
CCATGTACGTGTAACTCCAGTTGCCATGTCGCTGAACTGCAGTTGCCATGTCGGACAACTGCAGTTGCCATGTCGCTGAA
CTACAGTTGCCATGTCGGACAACTACAGTTGCCATGGTTGCTCGTAACTCG----------------------AGTTGCC
ATGTCGGACAACTGCAGTTGCCATGTCGCTGAACTGCAGTTGCCATGTCGGAC---------------------------
--------------------------------------------------------------------------------
------AATTG------------------------------------------------------------------CAG
TTGCCATGGTTGCTCAAGTGTAGTTGCCATCTCAGGTCAAGTGCCGGATGCCATTTTTGGGCAACTGCAGCTGTTGCCAT
GTATGGTCTGGTCTACTACATTTGCCATGATTTGAAAACTTTAGGAGTTGCCACCTACTAACACTAGATAGTTGCCATGT
AGCACTAC-AAAACATGGCAAAAAACATGTCCGGGGTAAAAGAGAGTTGCCATATGCTTACAAGCACACTAG-GGCAGTT
GCCATGTACCCTACAAAAACACATGGC-AACTGATAGCTTTTGGTGTGTGGGAGAGGAGACGGGCATGTGGACTACGGTG
GTATCTTTAGGAGTTGCCACCTACTAACA
>SNPs
--SS---SSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------SS---------S----------------S-
--------------S-----------------------------------------------------------------
----------------------------------------------------------S----------------SS---
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
----------------------------------------------------------------------S---------
--------------------------------------------S-----S------------------------S----
-----------S-----------------------------------S--------------------------------
--------------SSSSSSSSS----S-----------SS---------------------------------------
---------------------------------------------------S---------------------------S
S-----------------S-------------------------------------------------------------
---------------------------------------------------------S------------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
-------------S--------------------------------------S---------------------------
--------------------------------------------------------------------------------
---S--------------------------------------------------------------S-------------
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
--S-------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S-S-------------------------------------------------------------
---------------------------------------------S----------------------------------
-----S---------------------------------S-----------------------SSSSS------------
---------------S-----------------------------------------------S----------------
-------------------------------S--S--------------------------S------------S-S-SS
S-------------------------------------------------S---------------------S-------
------------------------S-------------------------------------------------------
-----------S--------------S---------SSSSSS--------------------------------------
---------------------------------------------------S----------------------------
-------------------------------------------------S------------------------------
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
--S--S--------------------------------------------------------------------------
-----------------------------------------------------------------------S-S-----S
--------------------------------------------------------------------------------
-----------SSSSSSSS-----------------------------------SS-----------S---S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S----------S-------------
-------------------------------------------S--------------S---------------------
-----------------------------
>forward_812
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------------------------------------------------------------------------CGCAAGCG
CAGTAAGGAAAC--------------------------------------------------------------------
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>reverse_2451
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--------------------------------------------------ATGTTTTTCAACTCCGGGTGC---------
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>forward_2304
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--------------------------------------------TTTGGCGCAACACCTGTTTC----------------
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>reverse_3644
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-------------------------------------------ATTGTGGGAGAGGAAACGGG-----------------
-----------------------------
