>input_sequence_52140
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----------------------------------------ATTTAGGGTACAGTAACTTTTCTGACATCCGTGGTGTATG
TTAGAGGATCCGGCGCTATGGTACCATCGGTTAGCCGTACGGTAGGTGGTGATCGATCGGTACACCCATCGGTTAGCCGA
CGGCTATCACCGGCCTAGTATTATTTTTGGGAAGCGCACACGACTTTTCCTCGTCTGTTGAGGTCAACAAGACACACCTC
GCC----CCGTGGCTTCCTCCTGCTCCCGTTGATTTCTTGGCAGCGTCCGTCCGCAGCTAGAAACCAAAGCACACTCGTC
TTCTTCCTTCCCCATTCTGTCAGCTACTCTTCTTCCTCCTCCTCCTCCTCA-----------CATGGACGCGTCATCGTC
GGAGGACCGTCAGTCGCCACGCAGCAGGCAGCTGCAGCTGCAGGGCCCGCGCCCCCCGCGGCTGTCCGTCAGCAAGGACT
CCCACAAGGTCAGGAAGCCGCCCGTCGTGCCGCTGCCCTACGGAGCCCGGCAGCAAGCCCCCAACAACCGCCACCAGCAA
GCTCAGC------------CG---------CGGGCGCCGGTCATCATCTACGACGCCTCGCCCAAGGTCATCCACACCCA
GCCCGGCGAGTTCCTGGCGCTCGTCCAGCGCCTCACCGGCCCGGGCGCGCCGGCTCAGTACTCC------GCCGAGGAGG
CGGCGGGGTCCTCTGCCATGCCGCCGCAGTTCCAGCCGCAGGAACTGCCTTTCTCGCCGGCGGCGAGGTACGCCGCGATC
GAGAGGTCCGTCCGGCCGCTGCCGCCTGGGCCCGCGCCGTACGCCGCCGGCTCCTGGCTGGACCTGGATGGCTTCGCGGA
GGTCCTCGGCCCGGGACGGCCCGGGATCCTCTCGCCCGTGCCGTCAGCGCTGCCGGCGGCGGCCTCGGCGGGGCTGTTCT
CGCCGCTGCCGTTCGACACCAGCTCCCTGTCCTGGCTCAACGACCTGAGCCCGTTCCTCGCCTCCGCCGGCGCCCGCGAC
GCGCCGCCCTTCGCCTCGAGCCCTGGCGGCCTGCTGCTTGCCACGCCCACCGTGCCCTCGCCGGGGATGATGATGCGGTT
CTTCAGCGACTTTCCGGACCTGTAAATTAACCT-----GATTTGATTTGATTTGTTTTTTTCTGCGTCCGGGTTTAAATG
GCTGCCGGAGG---ACCAGGGAGTAGGTGTG--CTAGTGAGCTTCGTCTCTGGGTAGTTGGCTAATCAATCAGAAAAAAA
ATACTACTCCTCCTGATTGAGTATTAAGTTGAGTAGATAGA----CATCGCTCCTGTTAATTGTTTGACATTGTCAACTG
ATTGAGTAG------------TGTAGGTTTGTGTTAA-CCTTGTTTCAAGATTATTGACTCTTGG------GAGCCAACC
ACCTTTG----GTGGGTGGTTCTTTCAATTAATTCTGAT-TGTGTTACTTGTAAACGAAGGTGTGATATGTTGTTTCTTG
TCTTG-TTTCTTATTTTAAG------------------------------------------------------------
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>chr5D_1_TraesCS5D01G034800
AGGAGAATGGATGGTCATCTCCACCCAGGCCATTGCCAAGGCATCACCATGCTGCCCAGTTCAGAATCCCAGATCGCTCT
AGCCATTGACCTATGCATGTCCCTGTGCACAGATCGCCTGCCGCTGCATGTCCATGCGCAGATCGCTCTAGCCTTCGGAC
GTTGCATGAAGATCGCTGCTGAGTTGTTGTTCACCTCGCGCGCCGTTCAGCGCCTTGCGTAGAAGCCATCGCCCGGAGCC
CCGCCGCCGCCGTCAGCCACACAGGCTTTGCCCGGCAGCGTCGTCCGGCGGCGGCGAGGGAAGCGAGAGAGGTGGGGAGG
TCCCGAAGAAACTGGATCGGGAGCCGCCCGTGCCGTCCGTCCGGACGACGCAAGACAGATTGTCTCCTGCAAGCGAATCC
TATGAGTGAATATTATATGTGGTGAGCTAATCTAGGTCGAGCATTCTAAAGCTGTGACTGGCCGCACACTCATTTGCGAC
AGACGACTACTAACACTACGGTATAAGACGGAGACGCGCATCGCCAAAAAAGTTGCAACCGGCCGCGCTCTTTGCTGTGA
CCTGTGGTGGTACACTATGAGACATGGATGCGTGTCACCGGCGATGCTCCGAGCAGCGGGGCACTTTGGCAACCCGGGTG
CGGCGTGCTAGCAAGAGAATGAGATGAGGGACGTGTGCGGCCGGCGAGGCGGTGAGTAGTGCTGCAATGGTCGACAACAC
CTACTGCGGCAGGCGGTGCTGGAGCCGGATCTTCTAACTTAGAAAAGGTGAGTCACGGTGCTATGATGCTCGTCTAGTGT
AAAATGAAGAAGGAATGTTAGGGACTATTAGCAGGCTATATACTTTTGATAATTATATGTAGATATAAAAAATCTAAAAT
TAATTATAGCTCACCATCAACTTGTTTATATGTAATTACTATGAATGTACGTACTAGATTTGTAATTTAAAAATTAATTC
AAGTTATTTCAACCTTAATTGTTTGGATTAATAGAAGAAAATTTAGGGTACAGTAACTTTTCTGACATCCGTGGTGTATG
TTAGAGGATCCGGCGCTATGGTACCATCGGTTAGCCGTACGGTAGGTGGTGATCGATCGGTACACCCATCGGTTAGCCGA
CGGCTATCACCGGCCTAGTATTATTTTTGGGAAGCGCACACGACTTTTCCTCGTCTGTTGAGGTCAACAAGACACACCTC
GCC----CCGTGGCTTCCTCCTGCTCCCGTTGATTTCTTGGCAGCGTCCGTCCGCAGCTAGAAACCAAAGCACACTCGTC
TTCTTCCTTCCCCATTCTGTCAGCTACTCTTCTTCCTCCTCCTCCTCCTCA-----------CATGGACGCGTCATCGTC
GGAGGACCGTCAGTCGCCACGCAGCAGGCAGCTGCAGCTGCAGGGCCCGCGCCCCCCGCGGCTGTCCGTCAGCAAGGACT
CCCACAAGGTCAGGAAGCCGCCCGTCGTGCCGCTGCCCTACGGAGCCCGGCAGCAAGCCCCCAACAACCGCCACCAGCAA
GCTCAGC------------CG---------CGGGCGCCGGTCATCATCTACGACGCCTCGCCCAAGGTCATCCACACCCA
GCCCGGCGAGTTCCTGGCGCTCGTCCAGCGCCTCACCGGCCCGGGCGCGCCGGCTCAGTACTCC------GCCGAGGAGG
CGGCGGGGTCCTCTGCCATGCCGCCGCAGTTCCAGCCGCAGGAACTGCCTTTCTCGCCGGCGGCGAGGTACGCCGCGATC
GAGAGGTCCGTCCGGCCGCTGCCGCCTGGGCCCGCGCCGTACGCCGCCGGCTCCTGGCTGGACCTGGATGGCTTCGCGGA
GGTCCTCGGCCCGGGACGGCCCGGGATCCTCTCGCCCGTGCCGTCAGCGCTGCCGGCGGCGGCCTCGGCGGGGCTGTTCT
CGCCGCTGCCGTTCGACACCAGCTCCCTGTCCTGGCTCAACGACCTGAGCCCGTTCCTCGCCTCCGCCGGCGCCCGCGAC
GCGCCGCCCTTCGCCTCGAGCCCTGGCGGCCTGCTGCTTGCCACGCCCACCGTGCCCTCGCCGGGGATGATGATGCGGTT
CTTCAGCGACTTTCCGGACCTGTAAATTAACCT-----GATTTGATTTGATTTGTTTTTTTCTGCGTCCGGGTTTAAATG
GCTGCCGGAGG---ACCAGGGAGTAGGTGTG--CTAGTGAGCTTCGTCTCTGGGTAGTTGGCTAATCAATCAGAAAAAAA
ATACTACTCCTCCTGATTGAGTATTAAGTTGAGTAGATAGA----CATCGCTCCTGTTAATTGTTTGACATTGTCAACTG
ATTGAGTAG------------TGTAGGTTTGTGTTAA-CCTTGTTTCAAGATTATTGACTCTTGG------GAGCCAACC
ACCTTTG----GTGGGTGGTTCTTTCAATTAATTCTGAT-TGTGTTACTTGTAAACGAAGGTGTGATATGTTGTTTCTTG
TCTTGTTT-CTTATTTTAAGTTTGATGGTTAT--GCTTTGAAAGCCTTGTGTTACTTATTTGGATATAAGACAAAATTGG
GCTAGTTTGGAATCAGTTTAGCTGCACATCAGTCAGCTGATTCAAATTCGGCGTCAATCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAAGGGGCCGCCATCATCACCCCAATGTCTATCTTAGGGTTCAGGGTGGG-----------
-GGCAGTGGTGTGGGGATTCGCAGGAGATAAAGCTTAGTGCGGGGGCCCTAGAGGGATGGTCGGGGCGACGGAGGACCGG
CGGTGGGAAGTGGTTCCGGGGAGGGCGGCGAGGTGAGGCGGCGCTCCGCGCCGCCCGCCGGTAGTGGCTGGCGGCTCAAG
GAAGGAGATGTGTCGAGAGGTTGAAGAAAGAACGTGGGCCATTGATTTCACATCCAACGGTTCAAGAATCGACTGACCTC
AAATAAAAAA--TTCAGCTGGCTGATTTCTAGCCATTCCCGTTTCGAGTCAGCTATTCGTATGACATGTGAAGTCTGATT
CTTATTGTAAGGTGCAAGTCCAAGCCATACATATATTGAAGGAGGAGCCAAATTCCATGCGGTGACTTGTTTGCGGTATC
AAGTTCGGATGCAAATGATGGTATAGCACCGCTCGACTACTTTTGCGGTTCTTGTGTTTTCCTCCATTTGAGGAGT
>chr5B_1062
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---------------------TACCATCGGTTAGCCGTACGGTAGGTGGTGATCGATCGGTCCTCCCATCGGTTAGCCGA
CGGCTATCACCGGCCTACTATTATTTTTGGGAAGCACACACGACTTTTCCTCGTCTGTTGAGGTCAACAAGACACACCTC
GCCG----CGTGGCTTCCTCCTGCTCCCGTTGATTTCTTGGCAGCGTCCGTCCGCAGCTAGAAACCAAAGCACACTCGTC
TTCTTTCTTCCCCATTCTGTCAGCTAGCCTTCTTCCTCCTCCTCCTTTCACTGCGAGCGATCCATGGACGCGTCGTCGTC
GGAGGACCGCCAGTCGCCACGCAGCAGGCAGCTGCAGCTGCAGGGCCCGCGCCCCCCGCGGCTGTCCGTCAGCAAGGACT
CCCACAAGATCAGGAAGCCGCCCGTCGTGCCGCTGCCTTACGGAGCCCGGCAGCAAGCCCCCAACAACCGCCACCCGCAA
GCTCAGC------------CGCAGCAGCCGCGGGCGCCGGTCATCATCTACGACGCCTCGCCCAAGGTCATCCACACCCA
GCCCGGCGAGTTCCTGGCGCTCGTCCAGCGCCTCACCGGCCCGGGCGCGCCGGCTCAGTCCTCC------ACCGAGGCGG
CGGCGGGGCCCTCTGCCGTGCCGCCGCAGTTCCAGCCGCAGGAATCGCCTTTCTCGCCGGCAGCGAGGTACGCCGCGATC
GAGAGGTCCGTCCGGCCGCTGCCGCCAGGGCCCGCGCCGTACGCCGCCGGCTCCTGGCTGGACCTGGACGGCTTCGCGGA
GGTCCTCGGCCCGGGACGGCCCGGGATCCTCTCGCCCGTGCCGTCAGCGCTGCCGGCGGCGGCCTCGGCGGGGCTGTTCT
CGCCGCTGCCGTTCGACACCAGCTCCCTGTCCTGGCTCAACGACCTGAGCCCGTTCCTCGCCTCCGCCGGCGCCCGCGAC
GCG------------TCGAGCCCCGGCGGGCTGCTGCTTGCCACGCCCACCATGCCCTCGCCGGGGATGATTGTGAGGTT
CTTCACCGACTTTCCGGACCTGTAAATTAACCTTGTTCGATTTGATTTGAT---TTTTTTTCTGCGCCCGGGTTTAAATG
GCTGCCGGAGG---ACCAGCGAGTAGGTGTACACTAGTGAGCTTCGTCTGTGGGTGGTTGGCTAATCAATCAGAAAAAAA
AATA-----CTCCTGATTGAGTATTAAATTGAGCAGATAGG----CATTGCTCCTGTTAATTGATTGACATTGTCAACTG
ATTGAGTAG------------TGTAGGTTGTGC-TAA-TCTTGTTTCAAGATTATTGACTTTTGG------GAGCCAACC
ATGTTTG----GTGGGTGGTTCTTTCAATTAATTCTGATTTGTGTTACTTGTAAANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------------------------------
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-----------------------GGGCCGCCGTCATCACCCCAATGTCTGTCTTAGGGTTTAGGGTGGGGCGGTGGTGGA
CGGCGGTGGTGTGGGGATTCGCAGGAGAAAAAGCTTAGTGCAGGGGACCTAGAGTGATGGTCGGGGCGACGGAGGACCGA
TGGTGGGGAGTGGTTCCGGGGAGGGCGGCGAGGGCCGGCGGTTAGGCCGATGA-----------TGGCTGGCGGCTCAAC
GAAGAAGATGTGTCGAGAGGTTGAAGAAAGACCGTGGGCCATTGATTTCACATCCAACGGTTTAAGAATTGACTGACCTC
AAAAAAAAAAAATTCAACCGACTGGTTTCTAGACATTCCCGTTTCGAGTCAGTTATGCGTATGACATGTGAAGTCTGATT
CTTATTGTAAGGTGCAAGTCCAAGCCATACATATATTGAAAGAGGAGCCAAATTCAATGTTGTGACTTGT----------
----------------------------------------------------------------------------
>chr5A_1076
CGTATGGTGGGA--------------------------------------------------------------------
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-----------------------------------------------GGTGATCGGCCGGTACTCTCATCGGTTAGCCGA
CGGCTAGC----GCCTACTATAATCTTTGGGAAGCACACACGACTTTTCCTTGGCTGTTCAGGTCAACAACCACCTTGCC
CCGTGGGCCGTGGCTTCCTGCTGCTCCCGTTGATTTCTTGGCAGCGTCCGTCCACAGCTAGAAACCAAAGCACACTCGTC
TTCTTCCTTCCCCATTCTGTCGGCTACTCTTCTTCCTCCTCCTCCCG---CTGCGAGCGATCCATGGACGCGTCGTCGTC
GGAGGACCGTCAGTCACCACGCAGCAGGCAGCTGCAGCTGCAGGGCCCGCGCCCCCCGCGGCTGTCCGTCAGCAAGGACT
CCCACAAGGTCAGGAAGCCGCCCGTCGTGCCGCTGCCTTACGGAGCCCGGCAGCAAGCCCCCAACCACCGCCACCAGCGA
GCTCAGCCGCAGCCGCAGGCGCAGCAGCCGCGGGCGCCGGTCATCATCTACGACGCCTCGCCCAAGGTCATCCACACCCA
GCCCGGCGAGTTCCTGGCGCTCGTCCAGCGCCTCACCGGCCCGGGCGCGCCGGCCCAGTACTCTAACTCTACCGAGGCGG
CGGCGGAGCCCTCTGCCGTGCCGCCGCAGTTTCAGCCGCAGGAATCACTTTTCTCGCCGGCAGCGAGGTACGCCGCCATC
GAGAGGTCCGTCCGGCCGCTGCCGCCAGGGCCCGCGCCGTACGCCG---GCTCCTGGCTGGACCTGGATGGCTTCGCCGA
GGTCCTCGGCTCGGGACGGCCCGGGATCCTCTCGCCCGTGCCGTCGTCGCTGCCGGCGGCGGCCTCGGTGGGGCTGTTCT
CGCCGCTGCCCTTCGACACCGGCTCCCTGTCCTGGCTCAACGACCTGAGCCCGTTCCTCGCCTCCGCCGGCGCCCGCGAC
GCGCCGCCCTTCGCATCGAGCCCCGGCGGCCTGCTGCTCGCCACGCCCACCGTGCCCTCGCCGGGGATGATGATGAGGTT
CTTCAGCGACTTTCCGGACCTGTAAATTAACTTTACT--ATTTGATTTGAT---TTTTTTTCTGCGTCCGGGTTTAAATG
GCTGCCTCAGAACTACCAGCGAGTAGGTGT----------GCTTCGTCTGTGGGTGGTTGGCTAATCAATCGGGAAAAAA
AA--TACTCCTGCTGATTGAGTATTAAATTGAGTAGATAGATAGACATTGCTCCTGTTCATTGTTTCACATTGTCAACTG
ATTGAGTAGGTAGAATGGTAGTGTAGGTTGTGC-TAATCCTTGTTTCAAGATTATTGACTCTTGGTCTTGGGAGCCAACC
ATGTTTGGTGTGTGGGTGCTTCTTTCAATTCATTCTAAT-TGTGTTACTTGTAAACGAAGGTGTGATATGTCGTTTCTTG
TCTTG-TT-CTTATTTTAAGTTTGATGGTTATATGCTTTGAAAGCCTTGTATTACTTATTT-------------------
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>SNPs
S-S-SSS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS------------------------------------------S----------------
-----------------S-----------------S--------------------------------------------
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----------------------------------------------SSSSS-----------------------S-----
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-------------------------------------S------------------------------------------
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----------------------------------------------------------------------S------S--
--------S--------S--------------------------SS---------------S------------------
--------------------------S-----------------------------------------------------
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--------------S--------S---------------------------------------------------S----
---------------------------------------------------SSS--------------------------
-------------------S----------S------------------S-----S------------------------
-SSS-----------------------S--------------------S-------------------------------
-----------------------------SSSSS----------------------------------------------
-SS--------------------------------------------------------------------S--------
-----S--------------------------------------------S----------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
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------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS--------S-----------------S----------S-------------------
----S-----------------------S------------S----S-------S------------------------S
S------S-------------------------SSS-----SSSSS-SSSSSSSSSSSSSSSSS---------------S
----S--------------------------S------------------------------S------S----------
---S------------S-S-S---S-------S-------------------S---S-----------------------
----------------------------------------S--------------S---SS---------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_176
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----------------------------------------------------------------------------GGAC
GTTGCATGAAGATCGC----------------------------------------------------------------
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>reverse_1053
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------------GCGCTATGGTACCATCGGTT------------------------------------------------
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>forward_795
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-------------------------------------------------------CGGTGCTATGATGCTCGTCT-----
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>reverse_2076
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---------------------------------------------------------------------------CGGTT
CTTCAGCGACTTTCC-----------------------------------------------------------------
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>forward_1058
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------------------------------------------------------------------------------TG
TTAGAGGATCCGGCGCTA--------------------------------------------------------------
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>reverse_3069
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----------------------------TAAAGCTTAGTGCGGGGGC---------------------------------
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