>input_sequence_52101
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-------------------------------------------------ATGGCAACGGAGGCCTCAGCATCTGCGTGCC
AGCACGGTGTCCGCATCGTGTCTCGGCGAATGGTGCGGCCGGCAAGCGACGGGGAGACGGAGACGACGACGAAACCAAAG
TCGACTGAGACGGTGCACCTCACGCCGTGGGACCTGCAGATGCTCACCGTCGACTACATCCAGATGGGCGTCCTCCTGCC
CCGGCCACCGACGCCGACGACGGCAGA---GCACATGGTCGACCACCTCGCGCAGTCCTTGGCGCGCGCAGTGGCACGTT
TCTACCCCTACGCCGGCCGCCTCGCCACCGAGGAACA---CACCGGCGGCAGCG------------------------TC
ACCGTTTCGCTGCAATGCACCGGGCACGGCGCCGAGTTCGTCCACGCCGTGGCGGCAGACACCAACGTCGCCGACGTGGC
TGGCTCGCTGA---------------------------------------------------------------------
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---------------------------GTATCCCTAGCGTGGTCTGGTCCTTCTTCCCTCTCAACGGGCTGGTCGGCGCC
GACGCCGCCGTGGGCAGCCGCAGCGGCTCCCGCATCCCAGTCCTCGCCGCCCAGGTCACCGAGCTCGCAGACGGCGTGTT
CGTGGCCATATCGCTCAACCATGGCGTCGCGGACGGGACTGCGTTCTGGCACCTGTTCAACACGTGGTCCGAGATCAGCC
GCAGCAGCTGGAACGGCAGCAGCGAGGCGAT-----CGCCACGCCGGAGCCCGTGCTGGAGCGGTGGTTCCCGGACGGCT
GCCCGGTTCCCGTGCCGCTTCCATTCCCGACGCTGGATCACGCCGTGCGGCGGTTCCACGGCCCACCCGTGGAGGAATGC
TTCTTGGCATTCTCCGCGGAGAGCATCAGGAGCCTCAAAGCGAGAGCCAACGCCGAGAT---ATCAGGCACG------GC
CACCGTTTCCTCGCTGCAGTCCCTGCTCGCGCACCTGTGGCTCGCCGTGACCCGCGCCCGGCGCCTCCGGCCGGAGCAGG
AGACCTCCTACACGTTGGCGGTCAGCTGCCGGGGTCGAGTGAAGCGCGTGCCCCAGTTATACTCGGGCAACTCCATGGTG
CGGTGCGCGACGGCGAAGGTGGCCGCCGGCGAGATCCTCCGCGGTGGC---CTGCGTTCGGCGGCGTGGCGGCTGAACCG
CGCGGTGGCGTCGTGCGATGAGGCGGCCCTGGTTGGGTCCACGGCGGCGTGGCACACGGAGCCACCGTTCGCGTACCTGG
TCGGGTGGTGGCACCCG---GCGCTGCTGGTGACGGGCAACTCGCCGCGGTTCGACGTGTTCGGTAACGACTTTGGGTGG
GGGAGGCCGGTGGCGGTGCGGAGCGGCGGCGGGAACAAGGTTGACGGAAGGGCCACCGTGTACGAGCTGGGGCGCG---A
AGGTGGAATCGGCATGGAGCTCTGCCTGGCTCCGGAGGCTCTTGCAAGGCTCATCGCGGATGACGAGTTCATGGCCCTGC
TCAACCAAGGCCAATAG---------------------------------------------------------------
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>chr1A_1_TraesCS1A01G008500
AAATGCGCCTTTTGTATGACATACATATAAACTTGTTGACTTTTTTGTAAGAAACTCCGTGAGCACCGCGCGTCCGTGCC
GAGACTCGAACTCGGGTGGGCTAGCAGCAACCTCAACTGTCCAACCAACGGGTCGACCCCCCGTTCTCGTATGACATACA
TATGAAGGAGGAATAATTGTATGGCTGATTTGTGGTATCCATCAATCCATTGATAGAAGGAAAGCCTCGCGATTGGTGTA
TGGCTGATTTGGGTTCGGTTACATTAGAAATCTTAGTGATTGGTGTTGATTTTTGTTGTATGGCTGATTTGGGTACAGAC
GTACGGTTACATTAGAAAAACCAGATGGGAGGTGGAGGAGCCTGGCACAGAAAAAACCGGTGGGGAGCCTCGCGATGGAT
AAAATCGACGGGGGCAGTATGGCGTTTGATCGATGGGTGAGGGTACGAAACGAACGATGTATCTAGTCCCCTTTAGGAGT
AGAGATAATGTGAAGATTTTCATAAATGTCTTAGGCTGTTGCCAATGGATGGGTGCTTAGATGAGGTGTTAAGCACATTA
AATAGCTTGGCAACTATACTCCTCAATGCATAGGTGTTTAGCTTGCTTCATTTAATGAGTTAGCAACTAAAGTTTTTCAT
GTATTGATGGGCTTTTTTTCTTTAAATGTTTTGCCTAGATTCACGCATTTAGCATTGTTTCTTCGTGAGGTCACCACACT
CATCTCTCTCCTCTTAAATAACTTGCCACATTAGATTTTTTTACCTACATGAAAGGATTAGCACCTGTAGAAGATGAAGC
ATTGAGAGGGGCCTTATTAGCCGTAGATTTCTTGGTTACCCCAAAGCCCTTTTTTTTGGAG--AACATACCCCCAAGACT
ATATCCTCCCCCTTG---AGTCTCCCAAATCCATCACACCGGCGAGCGCACACCATCTTTGACCATATCCAGCAGACTAA
ACCAGCTAGCATCATCTCGCTCTGA----GTTGTGGCCACAGCGAGGTGATGGCAACGGAGGCCTCAGCATCTGCGTGCC
AGCACGGTGTCCGCATCGTGTCTCGGCGAATGGTGCGGCCGGCAAGCGACGGGGAGACGGAGACGACGACGAAACCAAAG
TCGACTGAGACGGTGCACCTCACGCCGTGGGACCTGCAGATGCTCACCGTCGACTACATCCAGATGGGCGTCCTCCTGCC
CCGGCCACCGACGCCGACGACGGCAGA---GCACATGGTCGACCACCTCGCGCAGTCCTTGGCGCGCGCAGTGGCACGTT
TCTACCCCTACGCCGGCCGCCTCGCCACCGAGGAACA---CACCGGCGGCAGCG------------------------TC
ACCGTTTCGCTGCAATGCACCGGGCACGGCGCCGAGTTCGTCCACGCCGTGGCGGCAGACACCAACGTCGCCGACGTGGC
TGGCTCGCTGA---------------------------------------------------------------------
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---------------------------GTATCCCTAGCGTGGTCTGGTCCTTCTTCCCTCTCAACGGGCTGGTCGGCGCC
GACGCCGCCGTGGGCAGCCGCAGCGGCTCCCGCATCCCAGTCCTCGCCGCCCAGGTCACCGAGCTCGCAGACGGCGTGTT
CGTGGCCATATCGCTCAACCATGGCGTCGCGGACGGGACTGCGTTCTGGCACCTGTTCAACACGTGGTCCGAGATCAGCC
GCAGCAGCTGGAACGGCAGCAGCGAGGCGAT-----CGCCACGCCGGAGCCCGTGCTGGAGCGGTGGTTCCCGGACGGCT
GCCCGGTTCCCGTGCCGCTTCCATTCCCGACGCTGGATCACGCCGTGCGGCGGTTCCACGGCCCACCCGTGGAGGAATGC
TTCTTGGCATTCTCCGCGGAGAGCATCAGGAGCCTCAAAGCGAGAGCCAACGCCGAGAT---ATCAGGCACG------GC
CACCGTTTCCTCGCTGCAGTCCCTGCTCGCGCACCTGTGGCTCGCCGTGACCCGCGCCCGGCGCCTCCGGCCGGAGCAGG
AGACCTCCTACACGTTGGCGGTCAGCTGCCGGGGTCGAGTGAAGCGCGTGCCCCAGTTATACTCGGGCAACTCCATGGTG
CGGTGCGCGACGGCGAAGGTGGCCGCCGGCGAGATCCTCCGCGGTGGC---CTGCGTTCGGCGGCGTGGCGGCTGAACCG
CGCGGTGGCGTCGTGCGATGAGGCGGCCCTGGTTGGGTCCACGGCGGCGTGGCACACGGAGCCACCGTTCGCGTACCTGG
TCGGGTGGTGGCACCCG---GCGCTGCTGGTGACGGGCAACTCGCCGCGGTTCGACGTGTTCGGTAACGACTTTGGGTGG
GGGAGGCCGGTGGCGGTGCGGAGCGGCGGCGGGAACAAGGTTGACGGAAGGGCCACCGTGTACGAGCTGGGGCGCG---A
AGGTGGAATCGGCATGGAGCTCTGCCTGGCTCCGGAGGCTCTTGCAAGGCTCATCGCGGATGACGAGTTCATGGCCCTGC
TCAACCAAGGCCAATAG-CCTGCGCATCTGTGCGGCT----TAGTAGGAGTATCCAAATTCAACATGATTCATTCAATAT
A-TTTATTTTGTTATCATCAGCTTTCTTTCTAGCATATATTTATTTTGTTATCATCAGCTTTCTTTCTATCATTGTTGGA
TCATGATTCTATCTACCATAACAATGCTATTAAATACTCGGCCGCTATTATTATCTATTTA---CTATAACTATTCATTC
GTATTTTGCTATATATATGCAAGCAATTATATTTCATTTGTCCTTGTACTACTTATTATCATCAAATAGTATAGCTTTTA
TTTTGCACAACCAAGGGTGGATCTCCTTAATTATCATCTTCCCAACACTATGCTTTTAAATATGGGTGTGGCTAGGTCTC
AGTCGAGTGAGATTTAACCAAGTCGCAATCAAGTAACATAACATGCAAGAAAGAAAAAGAAAGAAGTGAAAAGAAAAAGA
AAGAAGTGAAAGGTTATTGCGTAAGAAAATGATGTATCTTTATGTATTGTTTCACTCATTTACCGATGGATGAGAAGATG
GTGGCGAATGGTGGGAGAGGAACATGATATAGGGTTGCAATATTTTAACCAGGGTGGGCTGGGGTACGCGCGGCATGGGG
GACTCAGAGCGGTGTAGGACT-----------------------------------------------------------
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-------------------------------TACCGGCACGACACAAAAAGTTTCAG-----GTTTTGGGACATGTTGAC
AGTGTATTTCTCATTTCCGTGAGGGTTCTTCTAAAACTGACAAGGCGAAATACTTTTTTTTTGCGAACCAACTTGTGTGG
TTGGATGGTTAGAGGGTAAGTGGTATCCCAGCCCATCGGGATTCAAGTCCTGGTGCTCCCATTATTTTTTGGATTTATTT
TAGGATTTCCGACGATGCGCTTTCAGTGGGAGGAGATGTTCCTACGGACGACGAGGCGCCTACGGTGACTACGTAAATCT
CAAGATGATATAGCGTCTCTTTCTCTCGAAGGAGCTCATAGAGATAAGACATGCATGTGCGCGTTCATAGAGATGAGATT
A
>chr1B_850
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-------------------------------------------------TTTTTTTTGCAGAAAACATACCCCCAAGACT
ATATCCTCCCTCCTTCTCAGTCTCCCGAATCCACCACACGGGCGAGAGCACACCATCTTTGACCATATCCAGCTAAGTAG
ACCAGCTAGCATCATCTCGCTCTGCGTACGTTGTGCCCACGGCGAGGTGATGGCAACGGAGGCCTCAGCATCTGCGTGCC
AGCACGGCGTCCGCATCGTGTCTCGGCGAATGGTGCGGCCGGCAAGCGACGGGGAGAC---GACGACGACGAAACCAAAG
TCCACTGAGACGGTGCACCTCACGCCGTGGGACCTGCAGATGCTCACCGTCGACTACATCCAGATGGGCGTCCTCCTGCC
CCGGCCACCGACGCCGACGACGGCAGA---GCACATGGTGGACCACCTCGCGCAGTCCTTGGCGCGCGCACTGGCACGTT
TCTACCCCTACGCCGGCCGGCTCGCCACCGAGGAACA---CACCGGCGGCAGCGGCAAA---------------GGCGTC
ACCGTTTCGCTGCAATGCACCGGGGACGGCGTCGAGTTCGTCCACGCCGTGGCGGCAGACACAACCGTCGCCGACGTGGC
TGGCTCGCTGC---------------------------------------------------------------------
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---------------------------GTATCCCTCGCGTGGTCTGGTCCTTCTTCCCTCTCAACGGGCTGGTCGGCGCC
GACGCCGCCGTGGC------CAGCAGCCCCCGCATCCCAGTCCTCGCGGCGCAGGTCACCGAGCTCGCAGACGGCGTGTT
CGTGGCCATGTCGCTCAACCATGGCGTCGCGGACGGGACTGCGTTCTGGCACCTGTTCAACACGTGGTCCGAGATCAGCC
GCAGCAGC---------------GAGGCGAT-----CACCACGCCGGAGCCCGTGCTGGGGCGGTGGTTCCCGGACGCCT
GCCCGGTTCCCGTGCCGCTTCCATTCCCGACGCTGGATCACGCCGTGCGGCCGTTCCATAGCCCACCCGTGGAGGAATGC
TTCTTGGCATTCTCCGCGGAGAGCATCAGGAGCCTGAAAGCGAGAGCCAACGCCGAGAT---ATCAGGCACG------GC
CACCGTCTCCTCGCTGCAGTCCCTGCTAGCGCACCTATGGGTCGCCGTGACCCGCGCCCGGCGCCTCCGGCCGGAGCAGG
AGACCTCCTACACGCTGGCGGTGAGTTGCCGGGGTCGAGTGAAGCGCGTGCCCCAGTTATACTCGGGCAACTCCATGGTG
CGGTGCGCGACGGCGAAGGTGGCCGCCGGCGAGCTCCTGCGCGGTGGC---CTGTGTCCGGCGGCGTGGCGGCTGAACCG
CGCGGTGGCGTCGTGCGATGAGGCGGCCCTGGTCGGGTCCACGGTGGCGTGGCACGCGGAGCCACGGTTCGCGTACCTGG
TCGGGTGGTGGGACCCG---GCGCTGCTGGTGACGGGCAACTCGCCGCGGTTCGACGTGTTCGGTAACGACTTTGGGTGG
GGGAGGCCGGTGGCGGTGCGGAGCGGCGGCGGGAACAAGGTTGACGGAAGGGCCACCGTGTATGAGCTGGGGCGCG---G
AGGTGGCATCGGGATGGAGCTCTGCCTGGCTCCGGAGGCTCTTGCAAGGCTCATCGCGGACGACGAGTTCATGGCCGTGG
TGAACCAAGGCCAATAGGCCTGCGCATCTGTGCTGTGCGGCTAGTAGGAGTATCCAAAGTCAACATGATTCATTCAATAT
ATTTCATTTTATTATCATCAGTTTTCTTTG-------------------------------------TATCATTGTTGGA
TCATGATTCTATCTACCATAACGATGCTTTTAAATACTCGGCCACTATTATTATCTATTTATTACTATAGCTATTCATTT
ATATTTTGC----TATATGCAAGCAATTATATTTCATATGTCCTTCTACTGTACTCATTATCAAATACAGTATATACACT
CTACCGATCAAAAAAAATATACACTCTAGGTCGTTGCGC-----------------------------------------
--------------------------------------------------------------------------------
--------------------------AAACGATGTATCTTTATGTATTGTTTCATTCAGTTACCGACGGATGAGGAGATG
GCGGCGTACGATGGGAAGATGATAA---ATAGGACTGCTATCTTTTAACCAGGGCTGGGCTGCACCGGGGACTCGTGCGG
GCGGTGCAAGACTTGGGAATTTTTTCGAGCAATGCTACATCCACGTAATAATTTACGTAATGTTACGTGCTAATCTGACG
TGGGAATGTTGGATTGGATTAGGGGGAGGAGGAGGTTCACCCCACCTGAAAAACAAGANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTTACCTAACAGGCACATAGCCTTTCATAGGTTTAGGATTT
TCGCATTTTTCCATCTACAGAACGCGGTCTATACCGGCATGACCTAAAAAGTTTGCAGGTTAGTTTTGGGCCATGTTGAC
CGTGTATTTCTCATTCCCGTGAGGGTTCTTCTAAAACTGACAAGGTGAAGTATTCTTTT---------------------
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>chr2B_1116
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----CTGAGACTGTGCACCTGACGCCATGGGACCTGCGGCGGATCACCGTGGACTACATCCAGAAGGGCGTCCTCCTGCC
CAAGCCTC---------CGGCCGGCGT---GCATGCCCTCGAACACCTCGCGTCATCCTTCGCGCGCGCCGTGGCCCGCT
TCTACCCCCTCGCCGGCCGCTTCGCCGTCGCACCGCTAGCGAACCACGGCAACGCGGCGCCGTCACCTCGGCCGGCCCTC
ACGACCTCGCTCCGCTGCAGCGACGAAGGCGCCGAGTTCGTCCACGACGTGGCGCCCGGGGTCACCGTCGCCGACATCAC
CGGCGCGCTCTGCACCCCACGTGTGGTCTGGTCCTTCTTCCCTCTCAACGGGGGGCTCGGCACGGACGCCGTCGTGGACC
CCAGCCTGCCGGTCCTGGCCATGCAGGTCACCGAGCTCGCCGACGGCATCTTCATCGCCATGTCGCTCAACCACTGCGCT
GCCGACAGGACGACGTTCTGGTGCGTCTCTCTGAGAGGAGCGACCTCCCTTTTATAGGCGCAAGAAAAGGAGGCGAGAGG
GCAGCGACGGGAGGCGAAACGAAGAGAGGGAGATGAAGCAAATGGACTTCTGCCGAAGAGGCACCCCGTTCGGATTCAGT
GTCCACTACGAAAAACATTTCAGCTCCCGCGCGACCTTTCGTATACCCGTCGTGCGTGGCAAAAGTTTAACATCGGCTCA
GCTCATTCCCGCAACCCGCGTCGCGTTGGGACGAAGCGTGGCGGTGGAGGAGGAGCGCGTGGATGTCTCTCTTGTTCCCA
TGCTCATACAAATAGGGAAAGAGCTTCCTTATAAAGAGTTTCAACTCCCTCTAAACTAGCAATGTGGGACTAAACTTTTA
GTTCCACCTCTTGCCTTGCACGAATGGGCTGCGTGGGCCTCTAGGATTTATTAGGAATTTCTGAAACTGCTATTGGGCTA
GGCCCGAATAGACAAAAATTCCAGCAATATGTTTGTACGATACAATTTTTTGGCACATACCTTTTTTTGCATATTCATCA
ACTATTAAGATAGTACAAAGAACATTGGAAGTAAAAAAAACATTACATTCAGGTCCGTAGTCCACCTAGTGACGACCACA
AGCACTGGAGCGAGGAGAAGGCGTGCCGCCATCATTGTCACTTCCTTATGGAAGCAGAGCAAACATTATTATGATAGACA
GTCGAGAAGTCGTCGTGCGTTTTTGTCTACCCAACCATGCATGCTATACGTATGGCATTTTTCATTGGATTTTTGTATTG
AAGATCGAACCAAAATGCATCACGTCGTTGGATTGCAATGTTGTACCGAAATTGGACATGAGGTGTTTGTAGTCTGGTTC
GCGTTACCTTCCGCAGGTTTCCAGAAAAAATGTGTCGTGTGTAGGGTGTGGTTATGGTTTAATGAGCCACGCGAACCACG
CGGTGGTCATTTTCGCAAAAAATAGAAAGCTCCGAGATCTTAACTTGCTCCTGCTCTCAATATATATATATATATATCCC
ACACCCCCAAGCCACACAGCACACCCTTAACGAAAAAAAGGCCACACAGCACACAGTCCACACACACGATCGAGCGCAAA
CTCACGTTCTGGCTGCTGCTCCGGCGATCAAAAATGAAAGGTGGCGGTGTCAAAATCTTGTCCCGGCGCATGGTCAAGCC
GGAGTACGAAGCGAGCTCGCGGCCTCGCGAGCCTGAGACTGTGCACCTGACGCCATGGGACCTGCGGCGGATCACCGTGG
ACTACATCCAGAAGGGCGTCCTCCTGCCCATGCCTCCGGCCGGCGTGCATGCCGTTGAACACCTCGCGTCGTCCTTCGCG
CGCGCCGTGGCCCGCTTCTACCCCCTCGCCGGCTGCTTCGCCGTCGCACCGGTAGCGAACCACGGCAACGCGGCGCCGTC
ACCTCGGCCGGCCCTCACGATTTCGCTCCGCTGCAGCCACGAAGGCGCCGAGTTCGTCCACGCCGTGGCGCCCGGGGTGA
CCGTTGCCGACATCACCGGCGCGCTCTGCACCCCACGTGTGGTCTGGTCCTTCTTCCCTCTCAACGGGGTGCTCGGCACG
GACGCCGTCGTGGA------CCCCAGCCTG------CCGGTCCTGGCCGCGCAGGTCACCGAGCTCGCCGACGGCGTCTT
CGTCGCCATGTCGCTCAACCACTGCGCCGCCGACGGGACGACGTTCTGGGACCTGTTCAACACATGGTCGGAGATCAGCC
GAAACGAGAAGAA---------CATATCTACGGCGCCACCACTCCGGGTCC--------AGAGGTGGTTCCACGACGGCT
GCCCCGTGCCGATCCCTCTGCCCTTCGCCAAGGTGCAAGACATGGCCAGGCGGTTCGAGTACCCGCCGGTGCACGAATGC
TCGATCCGTTTCTCCCCGGAGAGCATAAAGAAGCTGAAAGCGAAGGCCAATGCCGAGAT---GGCCGGCACGGCCACGGC
CACCATCTCGTCTCTACAGGCCCTGTTCGCGCACCTATGGCGAGCGGTGTGCCGAGCCCGGGTGCTGGCGCCGGAGCAGG
AGACGAAGCTCACGCTCCCCATCGGATGCCGGACACGCATGAAGGGCATTCCGCAAGGTTACATCGGCAACGCGGTGGCA
G---GCGCAGTCGCCAGGACGCCTGTCGGCGAGATCCTGGGCGATGGCCGGCTGGGCCGGACGGCGTGGCTCCTGAACCG
AGCCGTGGCCTCGTTCGACGAGGCGGGCTTGAAGGCCGAGCTCGCGTCTTGGTCCCAGAACCCCAGCTTCAGGTACGCGG
CAGACTACGGCACGGAAGCTGTGGTGGTGGTGATGAGCGGCTCGCCGCGGTTCGACGTGTACGGCAACGACTTCGGGTGG
GGCAGGCCGGTGGCCGTCCGGAGCGGCGCGGGGAGCAAGCTAGACGGGATGGTCACGGTGTACGAGGACGGTGGAGGGAG
AGGCGGCATGGAGCTGGAGGTGTGCCTCGCCCCTGATGCGCTCGCCAAGCTCGTCGCCGACGAGGAGCTGATGG------
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>chr2A_1116
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----CTGAGACCGTCCACCTGACGCCATGGGACCTGCGGCGGATCACCGTGGACTACATCCAGAAGGGCGTCCTCCTACC
CAAGCCTT---------CGGCCAGTAT---GCACGCCGTCGAGCAACTCGCGTCGTCCTTCGCGCGCGCCCTGGGCCGCT
TCTATCCCCTCGCCGGCCGCTTCGCCGTCGCACCGGTGGCCAACGACGGCAACGAGTCGCCGTCGCGTCAGCCGGGCCTG
GCGATCTCGCTCTGCTGCAGCGACGAAGGCGCCGAGTTCGTCCACGCCGTGGCGCCCGGGGTCACCGTCGCCGACATCAC
CGGCGCGCTCT---------------------------------------------------------------------
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---------------------------GCACCCCACGTGTGGTCTGGTCCTTCTTCCCTCTCAACGGGGTGCTCGGCACG
GACGCCGTCGTGGA------CCCCAGCCTG------CCGCTCCTGGCCGCGCAGGTCACCGAGCTCGCCGACGGCGTCTT
CGTCGCCATGTCGCTCAACCACTGCGCCGCCGACGGGACGACGTTCTGGGACCTGTTCAACACATGGTCGGAGATCAGCC
GAACTAAGAAAGA---------CATGTCCACGCTGCCGCTACTCCGAGTAC--------AGAGGTGGTTCCACGACAGCT
GCCCCGTGCCGATCCCGCTGCCCTTCGCCAAGGTGCAAGACATGGTGAGGCGGTTCGAGTATCCGCCAGTGCAGGAATGC
TCGATCCATTTCTCCCCGGAGAGTATAAAGAAGCTGAAGGTGATGGCCAATGCCGAGAT---GGCCGGCACGGCCACGGC
CACCATCTCCTCGCTGCAGGCCCTGTTCGCGCACCTATGGCGAGCGGTGTGCCGAGCCCGGGCGCTGGCTCCGGAGCAGG
AGACGAAGCTCACGCTCCCCATCGGATGCCGGACACGCATGAAGGGCATTCCGCAGGGCTACCTGGGCAACGCGGTGGCA
G---GCGCGGTCGCCAGGACGCCCGTCGGCGAGATCCTGGGCGACGGCCGGCTGGGCCGGGCGGCGTGGCTACTGAACCG
TGCCGTGGCGCCGGTCGACGAGGCGGGCTTGAAGGCCGACCTCGCGTCCTGGTCCCAGAACCCCAGGTTCAGGTACGCGG
CCGACTACGGCACCGAACATGGGGTGGTGGTGATGAGCGGCTCGCCGCGGTTCGACGTGTACGGCAACGACTTCGGGTGG
GGCGGGCCGGTGGCCGTCCGGAGCGGCGCCGGGAGCAAGCTGGACGGGATGGTCACGGTGTACGAGGACGGCGGAGGGAG
AGGCGGCATGGAGCTGGAGGTGTGCCTCGCCCCTGATGCGCTCGCGAGGCTCGTCGCCGACGAGGAGCTGATGG------
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>chr2D_1116
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----CTGACACCGTCCACCTGACGCCATGGGACCTGCGGCGGATCACCGTTGACTACATCCAGAAGGGCGTCCTCCTGCC
CAAGCCTC---------CGACCGGCGT---CCACGTCGTCGAACACCTCGCGTCGTCCTTCGCGCGCGCCCTGGGCCGCT
TCTACCCCCTCGCCGGCCGCTTTACCGTCGCGCCAGTGGCCAACGACGGCAACGGGGCGCCGTCACCTCGACCGGGCCTC
ACGATCTCGCTTCGCTGCAGCGACGAAGGCGCCGAGTTCGTCCACGCCGTGGCGCCCGGGGTCACCGTCGCCGACATCAC
CGGGGCGCTCT---------------------------------------------------------------------
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---------------------------GCACCCCACGTGTGGTCTGGTCCTTCTTCCCTCTCAACGGGGTGCTCGGGACG
GACGCGGTCGTCGA------CCCCAGCCTG------CCGCTCCTGGCCGCGCAGGTCACCGAGCTCGCCGACGGCGTCTT
CGTCGCCATGTCGCTCAACCACTGTGCCGCCGACGGGACGACGTTCTGGGACCTGTTCAACACATGGTCGGAGATCAGCC
GAAACAAGAGCGG---------CATATCTACGGCGCCGCCACTCCGGGTTC--------AGAGGTGGTTCCACGACGGCT
GCCCCGTGCCGATCCCTCTGCCGTTCGCCAAGGTGCAAGACATGGCCAGGCGGTTCGAGTATCCGCCGGTGCAGGAATGC
TCGATCCATTTCTCCCCGGAGAGCATAAAGAAGCTGAAGGCGAAGGCCAATGCCGAGAT---GGCCGGCACGGCCACGGC
CACCATCTCGTCTCTGCAGGCCCTGTTCGCGCACCTATGGCGAGCGGTGTGTCGAGCCCGGGGGCTGGCGCCGGAGCAGG
AGACGAAGCTCACGCTCCCCATGGGATGCCGGACACGCATAAAGGGCATTCCGCAGGGCTACATCGGCAACGCGGTGGCA
G---GCGCAGTCGGCAGGACGCCCGTCGGCGAGATCCTGGGAGACGGCCGGCTGGGCCGGACGGCGTGGCTCCTGAACCG
CGCCGTCGCCTCGTTCGACGAGGCGGGCTTGACGGCCGAGCTCGCGTCTTGGTCCCGAAACCCCAGCTTCCGGTACGCGG
CCGACTACGGCACGGAGCCTGCGGTGCTGGTGATGAGCAGCTCGCCGCGGTTCGACGTGTACGGCAACGACTTCGGGTGG
GGCAGGCCGGTGGCCGTCCGGAGCGGCGCCGGGAGCAAGCTGGACGGGATGGTCACGGTGTACGAGGACGGCGGAGGGAG
TGGCGGCATGGAGCTGGAGGTGTGCCTCGCTCCTGATGTGCTCGTCAGGCTCGTCGCCGACGAAGAGCTGATGG------
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>chr2D_1118
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------GAGACCGTCCACCTCACGCCATGGGACCTGCTGCGGATCACTGTGGAGTACCTGCAGAAGGGCGTAGTCGTGCC
CAAGCCTC---------CGGCCGGCAGCGCCCACGCCGTCGAACACCTTGCGTCGTCCTTCGCGCGCGCTCTGGCCCGCT
TCTACCCACTCGCCGGCCGCTTCGCCGTCGCGCCCGTAGCCAGCGCGGACG---------------CTCGGCCGGGCCTG
ACGATCTCGATCAGCTGCGACGACCAAGGCGCAGAGTTCGTCCACGCCGTGGCGCCCGGGGTCGCCGTCGCCGACATCTC
CGGCCCGCTCCGCGT-----------------------------------------------------------------
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----------------------------CATCCCGCGCGTGGTCTGGTCCTTCTTCCCTCTCAACGGGATGCTCGGCGCG
GACGCTGCCGTGGA------CCCCAGCCTG------CCGCTCCTGGCCGTGCAGGTCACCGAGCTCGCCGACGGCGTCTT
CGTCGCCATGTCGCTCAACCACTGCGCCGCCGACGGGGAAACGTTGTGGGACCTTTTCAACACGTGGTCGGAGATCAGCC
GAAGCGGC------------------------------------------------------------------------
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>chr2D_1121
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---------ACCGTCCACCTCACGCCATGGGACCTGCAGCGGATCACCGTGGACTACGCCCAGAGGGGCGTCGTCCTGCC
CAAGCCTC---------CGCCCGGCGT---G------CTCCAACACCTCTCATCGTCCTTTGCACGCGCCCTGGGCCGCT
TCTACCCCCTCGCCGGCCGCTTGACCGTCTCCGACG---------------------------------GACCGGGCCTC
ACGATCTCGCTCCGCTGCAGCGACCAAGGCGCCGAGTTCGTCCACGCCGTGGCGCCCGGGGTCACCATCGCCGACATCAC
CAGCACGCTCT---------------------------------------------------------------------
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---------------------------GCATCCCACGCGTGGTCTGGTCCCTGTTCCCTCTCAACGGGGTGGTCGGCACG
GACGCCGCCGTGGA------CCCCAGCCTG------CCCGTCCTGGCAGCGCAGGTCACCGAGCTCGCCGACGGCCTCGT
CGTCGCCATGTCGCTCAACCACGCCGCCGCCAACGGCACCACGTTCTGGGACGTGTTCAACACGTGGTCCGAGATCAGCC
GCAACGGAGACACCTCACTGTCCACGTCCACGTTGCCACTGCCCCTGCCCA--------AGAGGTGGTTCCTCGAGGGCT
GCACCGTGCCGATCCCGCTCCCCTTTGCCAAGGTGGAGGACATGGCCAGGAAGCCGGAGTACCCGCCGGTGAAGGAATGC
TCGCTCCATTTCTCCACGGAGAGCGTGAGGAAGCTGAAGGCGAAAGCGAACAATGAGATGTCGGCCGGCACAGGA---GC
CACCATCTCCTCCCTGCAGGCCGTGCTCGCGCACCTGTGGCAGGCCACGTGCCGTGCCCGGGGGCTCGTGCAGGACCAGG
AGACGACGTGCTCGCTCGCCGTCGGATGCCGGGCGCGCCTGAAGGGCATGCCGCAGGTCTACGTGGGCAACGCGGTAACG
G---GCGCCGTCGGCAGGGCCGCCGTGGGCGAGATCCTGGGCGACGGCCGGCTGGGCTGGGCGGCGTTGCTCCTGAACCG
GGCCGTGGCTGCGGTGGACGAGGCGAGCGTGAGGGAGGAGCTCGCGGCGTGGCCTGGAAACCCCAGCTTCAAGTACCTGG
CCGGCGGCGGCGCGGCGATCATGGCCACGGGG---------TCGCCGCGGTTCGACGTGTACGGCAACGACTTCGGATGG
GGCAGGCCGGTGGCCGTCCGGAGCGGCCCCGCGAACAAGGTGGACGGGATGGTCACGGTTTACG----------------
--------------------------------------------------------------------------------
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-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S---------------------
----------S-S-S-----------S------S-----S------S--------------------------SS-S--S
------------------------S----------S----S---------------------------------------
-------S--------------------------------------------------SSS-------------------
--S-----------------------------------------------------------------------------
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----------------------------------------------------------------S---------------
----------S---------------------------------------------------------------------
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-----------------------------------S--------------------------------------------
-------------SSSSSSS----S--S----------------------S-----------------------------
---------S----------------------------------------------------------------------
--------S-----SSSSSSSS----------------------------------------------------------
----------------------------------------------------------SS--------------------
-----------------------------------S--------------------------------------------
------S-------------------------------------------------------------------------
--------------S----------S------------------------------------------------------
--------------------------------------S---------------S-------------------------
---------------------------------S---------------------S---------S--------------
-----------S--------------------------------------------------------------------
-------------------------------------------------------------------------------S
------S-----S-----------------------------------------------S---------------S--S
-S-------------------------------S-SS---------------------S---------------------
----S-----S----------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
----------------------S-----S--------------S-------------------------S---------S
S--------SSSS------------------------S-------S----SSSSSSSS-SSSS--SSSSSSSSSSSSSSS
S-SSSS-SS-SS--SSS-SS-SSSS--SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS---S------------------------S---S-------S-------S-----
-S----S-S-S-----SSSSS-S-SSSS-----SS---S--S------------SS--SSS-SSSSS-S-SSS-S--S--
-SSSSSS-SSSS-SSS-S-S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------S---SS---------SSS-------------S---------
S--------------S-----------------------------S---S--S-S----SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S
>forward_403
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------GGAGCCTCGCGATGGAT
AAA-----------------------------------------------------------------------------
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-
>reverse_4080
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------------------------------------------------A
AGGTGGAATCGGCATGGAG-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-
>forward_815
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GAAGC
ATTGAGAGGGGCCTT-----------------------------------------------------------------
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-
>reverse_4547
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------TGTGGCTAGGTCTC
AGTCGA--------------------------------------------------------------------------
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-
