>input_sequence_52039
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-------------------------------------------------------ATGTGGACGGGCTCCCCGTACTCCT
TCGCCGTCCTCGAACGCCTCCTCCAAGATCACTTCTCCGCCCCTCGCCGCCTCCTCCAGGTCCATGCCCTCCTCCTCACC
TCCGGCGCGCTCTCCACCTCCCACGCCGCCGCCACCTTCCCCTACAATTGCCTCATCCATGCCCACCTCCGCCTCCCCGC
TTCCACCATTACCCCGCTATGCGCCCCCCTCCGCCTCTTCTCGGCCATGCTCGCCGCTGGCGCGCGCCCCAACGGCCACA
CGTTCCCTTCCCTCCTCAGGTCCGCCTCCGCCTCCGGACCAGCCACCAGGGCTCTCCACACGCAGTGCCTCCGCCGCGGG
CTTACGGCCGATCGCTTCGTTGCATGCTCGCTCGTCAGCTCCTATGGCCAAGCTGGCCGTCTCGCGTGTGACGCTTCTAA
GGTGTTTGATGAAATGGCCAGCCCGGATCTGGCCTCCTCTAACGCCATGCTTGATGTGCTGTGCCTCGCCGGGGACGTGG
CTGCGGCTAGAGAATTCTTTGAGCGGATGGTGGTGAGGGATGTGGTGTCATGGACGACACTCATCTCTGGGTCATCGAGG
AATGGGTGCCACTGGGATGCTGTCGAGATCTTCAGGGGATTTTTGGTACACAACAGGGGACTGCTCGGGGAGGCCACACT
GGTCAGCGTGCTCTCGGCTTGTGCCAACTTGGATGGTGCCGAGGGGCTTGCTGTCGGGACGGCCGTTCACGCGTATGTCA
TTCGGCATGAGGTTGTCTTCACAGCGTTCTTGGGCACGGCATTGATCGACATGTATGGGAAGTATGGGAAGCTTGCCTGT
TGCAGGAGAGCTTTTGAGATTGTATGCGAGAAGGAGGTCTGTACGTGGAATTCACTGCTCTCTGCACTGGCTAATCATGG
GAAAGAGACTGAAGCACTGGTTAAGTTCAACATGATGATAGTTGGAGGGTTCTTGCCGAATCAGATCACATTTCTTGCTC
TACTGACAGGTTGTGCTCGAGCAGGATTGGTGGAGATTGGGTTATACTGGTTCGAGACGATGGTGACTGAATACAAGGTG
ACTCCGATGATGGCCCATTATGGATGTGTTGTGGACCTGTTAAGCCGTGCTGGCCGTTTTATGGAGGCCATCGAGAAGAT
AGAGCGGATGCCCTTTTTGCCTGATGCTTCTGTGTGGGGCGCGCTTCTTGGTGCTTGCAAGCTCCATGGAAATGTGGAGC
TTGTTGCTGAGATTGGGCGAAAACTAGTGGCTCTTGGTCCTCAGCAATCCGACCGGTATGTGACTATCAGGAATATTTAT
CTAGAAAATGGGAATTGGTGTGCTGCGACGAGAATGGGTGAGGTGATGCATGAGGCCGGGATCAAGAAGACAGCAGGGCA
AAGTAGTGTTGTGTTTCACAGCTCTGCCATTACTTGA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------
>chr4D_1_TraesCS4D01G099700
GGGGGGCAATGGTCGTTGTACCATGGACGGGCGGTCAGGGAGAACAAGGGAGGGCGTCGCGTTGTGTCCGCGCGGACGCA
AACTCGACCCAAATTAGGGCCGAAAATGGATTGAGGTGGACAAAAAATGGACATATGTCTGTTTAATCAGCGCATTAGAC
CGTGTTTTTTTATCAGCGCAGATCCAAATAGACATGGGCAGACGAAATGCATCCTTAGGTTGGAGTTCGCCTTAGCTCCT
GCACACTTTCCTGAGTTGCTCTCGTTATGTGATGCATCCAAATCCAACTGAAATCCCTGTTTTTACCGTTTTCGGTAACT
TTAGCACAAAATGAACTATTTCAAATTTTATTTCATGATCTGACCCTTTTGATAAATGATAATGCTAAAATTATGGTATT
TATGTCCTACCTAGACACGTCAAACTTACCACTGTTTCTTCTTTGACTAGATAAGTGATCGTGGGCACGCGTTAAACGCC
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------CAAGACGTGACGTTTGTTCTTACTGCAGAAACGCCATTGGCTATAGTG
TTTTCGACCTAAACTAGGGATTA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AAAGTTGCTTTTTGGAACTAAATGAAGAAGATTCTCAAAGAGTCTTTTTTGGGACTTTTTCAACAATGCCCCTCCCTG
CACCCATTGCCCCGCCGCCTCATGGTGTTGTTTGGTTGTTATTTTTCTGTATACTAAAGGTAACATGGTCTTTTACATGT
TATTTAATAACCTTAGGAAGGAACTAGAGACGTTTTAGTCTCTGAAAACCAATAAGGAGGGACCTTTTAAAGACTAGGGA
CTTTTTAATTAGGAATAGGAAAAATCATAGGACTTGAACCAAACAGAGCCTTACCTGCGTTGCGTTGTGTGGCACAAACG
CCCTGACGTTTGGCGTTTAAAAAAAAGGTTAAATTGTGCTAAAGTTACCAT-----------------------------
--------------------------------------------------------ATTTGATTAGATTTGATTTTTACC
GCCGGCTTTCCCTTCCTACGCCGCCGGCCTCCTCTCGCCGGCTTCCGGCTAGCATATGTGGACGGGCTCCCCGTACTCCT
TCGCCGTCCTCGAACGCCTCCTCCAAGATCACTTCTCCGCCCCTCGCCGCCTCCTCCAGGTCCATGCCCTCCTCCTCACC
TCCGGCGCGCTCTCCACCTCCCACGCCGCCGCCACCTTCCCCTACAATTGCCTCATCCATGCCCACCTCCGCCTCCCCGC
TTCCACCATTACCCCGCTATGCGCCCCCCTCCGCCTCTTCTCGGCCATGCTCGCCGCTGGCGCGCGCCCCAACGGCCACA
CGTTCCCTTCCCTCCTCAGGTCCGCCTCCGCCTCCGGACCAGCCACCAGGGCTCTCCACACGCAGTGCCTCCGCCGCGGG
CTTACGGCCGATCGCTTCGTTGCATGCTCGCTCGTCAGCTCCTATGGCCAAGCTGGCCGTCTCGCGTGTGACGCTTCTAA
GGTGTTTGATGAAATGGCCAGCCCGGATCTGGCCTCCTCTAACGCCATGCTTGATGTGCTGTGCCTCGCCGGGGACGTGG
CTGCGGCTAGAGAATTCTTTGAGCGGATGGTGGTGAGGGATGTGGTGTCATGGACGACACTCATCTCTGGGTCATCGAGG
AATGGGTGCCACTGGGATGCTGTCGAGATCTTCAGGGGATTTTTGGTACACAACAGGGGACTGCTCGGGGAGGCCACACT
GGTCAGCGTGCTCTCGGCTTGTGCCAACTTGGATGGTGCCGAGGGGCTTGCTGTCGGGACGGCCGTTCACGCGTATGTCA
TTCGGCATGAGGTTGTCTTCACAGCGTTCTTGGGCACGGCATTGATCGACATGTATGGGAAGTATGGGAAGCTTGCCTGT
TGCAGGAGAGCTTTTGAGATTGTATGCGAGAAGGAGGTCTGTACGTGGAATTCACTGCTCTCTGCACTGGCTAATCATGG
GAAAGAGACTGAAGCACTGGTTAAGTTCAACATGATGATAGTTGGAGGGTTCTTGCCGAATCAGATCACATTTCTTGCTC
TACTGACAGGTTGTGCTCGAGCAGGATTGGTGGAGATTGGGTTATACTGGTTCGAGACGATGGTGACTGAATACAAGGTG
ACTCCGATGATGGCCCATTATGGATGTGTTGTGGACCTGTTAAGCCGTGCTGGCCGTTTTATGGAGGCCATCGAGAAGAT
AGAGCGGATGCCCTTTTTGCCTGATGCTTCTGTGTGGGGCGCGCTTCTTGGTGCTTGCAAGCTCCATGGAAATGTGGAGC
TTGTTGCTGAGATTGGGCGAAAACTAGTGGCTCTTGGTCCTCAGCAATCCGACCGGTATGTGACTATCAGGAATATTTAT
CTAGAAAATGGGAATTGGTGTGCTGCGACGAGAATGGGTGAGGTGATGCATGAGGCCGGGATCAAGAAGACAGCAGGGCA
AAGTAGTGTTGTGTTTCACAGCTCTGCCATTACTTGACTAGAGTTTGTCTGTTGCAAATATTGCTCTTCTGGGACTACCG
TTTGTTTCTGATGACTTGTACC-TTTAGGAAAATACTAAACCACATCTT---GTTGTTC--AAGCTTATAACAAATATTT
GACGTAATGAAGAATCAGATTTTTATTCACTGAATCGGGCGG--GTTACCTTTGATTTGCAAGATTGCAAAAAGGCAGTA
TTAGGAAAATCACAGAATTGTAGTGGCATGTCTAC---TCAAAATCTATAGAATTTTGTTTGCACCAAAGTAGTGTATTT
GATTATACCACTGGTAAAACAAAAAGATTCTTTGCAAGAGGTTTGAGTGAATGAAAAATCCCTAAAAACTCTAAGCTCCC
GGGAATTGGAGGTCTGGGAGCACTCCGTGTATTTTTCGCTGGCGGGTCCCGGTTGTAAGGGGGAGATGTGTGTGTGGGAC
ACGGGTGTCAGGGAGGGCATGGGGTGTCTCCCGGTTGAACCGACGTTCAGTGTAGCGTGTTCGTTTCATGGTGGTTTGGG
TTGCGGTCGTGTCTTCTTTCCGCCGGCCCTTGTGAGTCTGGTCAAAGGGGATTCTTCATTCAGAGAGGGGGTGAAGTGGT
TGGCGGCTGTAGTTTCGGCAGGGTTGTATGAGCGGCTGGAAGACGAGGGTGGGGTCACTGGGTGATTGGCGGCGGAGGTT
CTCACCGCTCCCTGCGGACGGCTGCTACGATAGGGTGGACGGTGCGGTCGTCGTCGCTCTTTGATTCGGCCGCGTTGGGG
TTTGTTTTGTTTCGGCTGCTGCGGGTGTTTCCCCATGGATTGATGCGTGTATTTGCTCCCTTCTTCGCTATTATTTCTTT
CTTTCTTTGTGCCTTTGTGGTGTTGTTTCCTTGCCGGTGCCGATTGATATTTGACAGGCTTGTTTCGGCTGCGGTGGGTG
TCCTCCCCGTTTTTTTCTTTCTCCCCATGGATTACATGGTAGGGGCCGTAGTGGTGGATGCTTCCTGTGTATCATCACGT
GTTGCTGT
>chr4A_47
AGGGA-----------------------------------------------GGCGTCGCGTTGTGTCTGCGCGGACGCA
AACTCGACCCAAATTAGGGCCGAAAATGGATCGAGGTGGACAAAAAATGAACATCTGTCTGTTTTAGTCGATGCGTTGGG
CCGTTTTTTTTATCAGCGCGGGTCCAAATAGACAAGGGCGGACGAAATGTATCCTTAGGTTGGAGTTGGCCTTAGCTCCT
GCACACTTTCCTAAGCTGCTCTCGTCATGTGATGCATCCAAATCCAGCTGAAATCCCTGTTTTTACC-------------
-----------------ATTTCAAATTTTATTTCACGATCTGACCCTTTTGATAAATGATAACGCTAAAATTATGGTGTT
TATGTCCTACCTAAACATGTTAAACTTACCAGTGTTTCTTCTTTGACTAGATAAGTGATCATGGGCACGCGTTAGGGCAT
GTATAAGGGTGCTATTTTAGGAGTGCCACGTAGGATAAATGATGAGGTGGAGAAGAGAGAACTCATAAGAAAAGGCTTGT
CTTCTCTTA---------------GAGATGATCTCT----ACAATATGTCTCACCACGTTTTTAGGATTAGCTAGTTATT
GAAGATAAGGCTAAGAGATAACCTATTGTAGACACTTTTTTGTCATCTCTAAATTATATGCAAGATTTTGGATAAAACTA
CCTTATCAACCATTGTACATGCCCTTAGACGCCAAGACGTGACGTTTGTTC----GGCAGAAACGCTAACGGCCATAACG
TTTCCGATAAAGGGGGAATTTGATTATTTGCCACCCCTTACTTGGTACATTGACTATTTGCCACTCTTTACTTTGTATTT
GATCTGGTGACACTCTTTACCTGGGTGTTTGATATTTTGCCCCCTGTCAGACGGGTCCCACAACAAAAGACAAACTTACC
CTTACCTCTCAATTGATTAGGAACAGAGGAGCGCTCGCTCGATCTCATCCCCTATGTCGCACGCGAGGCTCTGGTGCTAC
TGGGCGGCAGCGGCCCTGGTGGTACTCGACGGCGGCGGCCCCGGTGAGTCCCTCTCTCCCGCTCCCTTCCTCTCTCCCGT
TCCATCCCTCTCTCCCGCTCATCTCCCCTGCGGCGGCGGCCCTAACCAGCAGGCGGAGCGATGGCGGAAGGAGAGACTGC
AGTACTAGGGGCAGCGGCAACAGGCCAAGAAGGGCTAGCGAGGAGCAACAAGGGCCGACAGGGAGTAGCAAGAAGGTTCA
GGAGAGGAGTGCAGCAAGAGTTCATCCCTTCCCCTGTGTAATGTTTGGTCAAATAGGTTCATTTATGTTGTCTATTATTT
TTAAAGTTTGTTTTTGTGTTGAAAAGTGGCAAAAGATCAAAGTCCAAAATAAAGAGTGTCATAAAATCA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------ATTTTTACC
GCCGGCTTTCCCTTCCTACGCCGCCGGCCTCCTCTCGCCGGCTTCCGGCTAGCATATGTGGACGGGCTCCCCGTACTCCT
TCGCCGTCCTCGAACGCCTCCTCCAAGATCACTTCTCCGCCCCTCGCCGCCTCCTCCAGGTCCATGCCCTCCTCCTCACC
TCCGGCGCGCTCTCCACCTCCCACGCTGCCGCCACCTTCCCCTACAACTGCCTCATCCATGCCCACCTCCGCCTCCCCGC
TTCCACCGTTACCCCGCTATGCGGCCCCCTCCGCCTCTTCTCGACCATGCTCGCCGCCGGCGCGCGCCCCAACGGCCACA
CGTTCCCTTCCCTCCTCAGGTCCGCCTCCGCCTCCGGACCAGCCACCAGGGCCCTCCACGCGCAGTGCCTCCGCCGCGGG
CTTACGGCCGACCGCTTCGTTGCATGCTCGCTCGTCAGCTCCTATGGCCGAGCTGGCCGTCTCGCGCATGACGCTTCTAA
GGTGTTTGACGAAATGGCCAGCCCGGATCTCGCCTCCTCTAACGCCATGCTTGATGTGCTGTGTCTCGCTGGGGACGTGG
CTGCGGCTAGAGTGTTCTTTGAGCGGATGGTGGTGAGGGATGTGGTATCATGGACGACGCTCATCTCTGGGTTATCGAGG
AATGGGTGCCACTGGGATGCTGTCGAGATCTTCAGGGGATTTTTGGTGGACAACAGGGGACTGCTCGGTGAGGCCACGTT
GGTCAGCGTGCTCTCGGCTTGTGCAAACTTGGATGGTGCTGAGGGGCTTGTGGTCGGGACGGCTGTTCACGCTTATGTCG
TTCGCCATGAGGTTGACCTCACAGCGTTCTTGGGCACGGCGTTGATCGACATGTATGGGAAGTATGGGAAGCTTGACTGT
TGTAGGAGAGCTTTTCATGCTGTATCTGAGAAGGAGGTCTGTACGTGGAATGCGCTGCTGTCTGCACTGGCTAATCATGG
GAAAGAGACTGAAGCACTGGTTAAGCTCAACATGATGATAGTTGGAGGGTTCTTGCCAAATCAGATTACATTTCTTGCTC
TACTGACAGGTTGTGCTCGAGCAGGATTGGTGGAGATTGGGTTATACTGGTTCGAGACGATGGTGACTGAATACAAGGTG
ACTCCGATGATGGCCCATTTTGGATGTGTTGTGGACCTGTTAGGCCGTGCTGGCCGTTTCATGGAGGCCATTGAGAGGAT
AGAGCGGATGCCCTTTTTGCCTGATGCTTCTGTGTGGGGCGCGCTTCTTGGTGCTTGCAAGCTCCATGGAAATGTGGAGC
TTGTTGCTGAGATTGGGCGAAATCTAGTGGCTCTTGGTCCTCAGCAATCCGACCGGTATGTGACTATCAGGAATATTTAT
CTAGAAAATGGGAATTGGTGTGCTGCGACGAGAATGGGTGAGGTGATGCATGACGCCGGGATCAAGAAGACAGCAGGACA
AAGTAGTGTTGTGTTTGACAGCTCTGCCATTACTTGACTAGAGTTTGTTTGTTGCAAATATTGCTCTTCTGGGACTACCG
TTTGTTTCTCATGACTTGTACC-CTTAGGAAAATACTAACCCACATCTT---GT---TC--AAGCTTATAACAAATATTT
GACGTAATGAAGAATCAGATTTTTATTCACTGAATCGGGCGG--GTTACCTTTGATTTGCAAGATTGCAAAAAGGCAGTA
TTAGGAAAATCACAGAATTGTAGTGGCATGTCCAC---TCAAAACCTATA------------------------------
-------------------------------TTGCAAGAGGTTTGAGTGAATGGAAAATCCCTAAAAACTCTAAGCTCCC
GGGAATTGGAGGCCTGGGACGCTATGTGTATTTTTTCGCTGGCTGGTCCCGGTTGTAAGGGGGAGATGCGTGTGTGGGAC
ACGGGTGTCAGGGAGGGCGTGGGGTGTCTCCCGGTTGAACCGACGTTCAGCGTCGCGTGTTCGTTTCATGGTGGTTTGGC
TTGTGGTCGTGTCTTCTTTCCGCTGGCCCTTGTGAGTCTGGCCAAAGGGGATTCTTCATTCAGAGAGGGGGTGAAGTGGT
TGGCAGCTGTAGTTTCGGCAGGGTTGTACGAGCGGCTGGAAGACAAGGGTGGGATCACTGGGTGATTGGCGGCGGAGGTT
CTCGCCGCTCCCTGCGGATAGCTGCTATGATAGGGTGGCCGGCGCGGTTGTCGTCGCTCTTCGATTCGGCCGCGTTGGGG
TTAGTTTTGTTTCGGCTGCTGCGGGTGTTTCCCCATGGATTGATGCGTGTATTTGCTCCCTTCTTCGCTATTATTTCTTT
CTTTCTTTGTGCCTTTGT----------------CGGTGCCGATTGATATTTCACAGGCTTGTTTCGGCTGCGGAGGGTG
TCCTCCCCGATTTTTTCTTTCACCCCATGGATTACATGGTAGGGGC---AGTGGTGGATGCTTCCTGTGTATCATCACGT
GTTGCTGT
>chr4B_259
CTCTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GTCATGTGATGCATCCAAATCCAGCTGAAATCCCTGTTTTTACCATTTTCAACAACT
TTAGCACAAAATGAACTATTTTAAATTTTATTTCAAGATGTAACCCTTTTAATAAAGGATAACGCCAAAATTATGGCGTT
TATGTCCTACCTAGACACGTCAAACTTACTAGTGTTTCTTCTTTGACTAGATAAGTGATCATGGGCACGCGTTAGGGCAT
GTATAATGATGCTATTTTAAGAGTGACATGTAGGATAAATGATGAGGTGGAGGTGAGAGAACTCGTAAAAAAATACTTGT
CTTCTTTTATTTAAAATAAGATAAGAGATAATCTCTTAGCACAATATGTCTCATCACGTTTTTAGGAATGACTAGTTATT
GAAAATAAGGTTAAAAGATGAACCATTGTAGATTTTTTTTTGTCGTCTCTAAATTATATGCAAGATTTA----AAAACTA
CCTTATCAACCATCGTACGTGCTTTTAAACGCCAGGAGGTGACGTTTGTTCTTAGGGCAGAAACGCCGACGGCCATAGCG
TTTCCGGTAAAGCTAGGACTGCCAAA------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------CTTACCTGCGTTGCGTTGTGTGGCACAAACG
CCCTGATGTTTGGCGTTTAAAAAAATGGTTAAATTGTGCTAAAGTGCCCAACGGGGGGTTATATTTTGTGCTAAAGTTAC
CGAAAATGGTGAAAACAGTGATTTTGGCCTCCAAATCCCAAACGCGTGCATATTTGATTTGATTTGATTTGATTTTTACC
GCCGGCTTTCCCTTCCTACGCCGCCGGCTTCCTCTCGCCGGCTTCCGGCTAGCATATGTGGACGGGCTCCCCGTACTCCT
TCGCCGTCCTCGAACGCCTCCTCCAGGATCACTTCTCCGCCCCTCGCCGCCTCCTCCAGGTCCATGCCCTCCTCCTCACC
TCCGGCGCGCTCTCCACCTCCCACGCCGCCGCCACCTTCCCCTACAACTGCCTCATCCATGCCCACCTCCGCCTCCCCGC
TTCCACCGTTACCCCGCTATGCGCCCCCCTCCGCCTCTTCTCGGCCATGCTCGCCGCCGGAGCGCGCCCCAACAGCCACA
CGTTCCCTTCCCTCCTCAGGTCCGCCTCCGCCTCCGGACCAGCCACCACGGCTCTCCACGCGCAGTGCCTCCGCCGCGGG
CTTACGGCCGATCGCTTCGTTGCATGCTCGCTCGTCAGCTCCTATGGCCGAGCTGGCCGTCTCGCGCGTGACGCTTCTAA
GGTGTTCGACGAAATGGCCAGCCCGGATCTGGCCTCCTCTAACGCCATGCTTGATGTGCTGTGCCTTGCCGGGGACGTGG
CTGCGGCTAGAGAGTTCTTTGAGCGGATGGTGGTGAGGGATGTGGTGTCATGGACGACACTCATCTCTGGGTTATCGAGG
AATGGGTGCCACTGGGATGCTGTCGAGGCCTTCAGGGGATTTTTGGTACACAACAGGGGACTGCTCGCGGAGGCCACGTT
GGTCAGCGTGCTCTCAGCTTGTGCAAACTTGGATGGTGCCGAGGGGCTTGCGGTCGGAATGGCCGTTCACGCTTATGTCG
TTCGCCATGAGGTTGACCTCACAGCGTTCTTGGGCACGGCGTTGATCGACATGTATGGGAAGTACGGGAAGCTTGACTGT
TGCAGGAGAGCCTTTCAGATTGTATGCGAGAAGGAGGTCTGTACGTGGAATGCATTGCTCTCTGCACTGGCTAATCATGG
GAAAGAGACTGAAGCACTGGTCAAGTTCAACATGATGATAGTTGGAGGGTTCTTGCCGAACCAGATCACATTTCTCGCTC
TACTGACAGGTTGTGCTCGAGCAGGATTGGTGGAGATTGGGTTATACTGGTTCGAGACGATGGTGACTGAATACAAGGTG
ACTCCAATGATGGCCCATTATGGATGTGTTGTGGACCTGTTAGGCCGTGCTGGCCGCTTTATGGAGGCCATTGAGAGGAT
AGAGCGGATGCCCTTTCTGCCTGATGCTTCTGTGTGGGGCGCGCTTCTTGGTGCTTGCAAGCTCCATGGAAATGTGGAGC
TTGTTGCTGAGATCGGGCGAAAACTAGTGGCTCTTGGTGCTCAGCAATCCGATCGGTTTGTGACTATCAGGAATATTTAT
CTAGAAAATGGGAATTGGTGTGCTGCGACGAGAATGGGCGAGGTGATGCATGAGGCCGGGATCAAGAAGACAGCAGGGCA
AAGTAGTGTTGTGTTCCACAGCTCTGCCATTCCTTGACTAGAGTTTGTTTGTCGCAAACATTTCTCTTCTGGGACTACCG
TTTGTTTCTCATGACTTGTACC-T-TAGGAAAACACTAAACCACATCTTGTTGT---TCAAAAGCTTATAACAAATATTT
TACGTAATGAAGAATCAGATTTTAATTCACTGCATCGTGCGCCCGTTACCTTTGATTCGCAAGATTGCAAAAAGTCAGTA
TTAGGAAAAGCACAGAATTGTAGTGGCATGTGTCGGTGTCAAAACCTATAAAATTTTGTTTGCACCAAAGTAGTGTATTT
GATTATACCACTGGTAAAATAAAAAGATTCTTTGCAAGAGGTTTGAGTGAAGGGAAAATTCCTA----------------
--------------------------------------------------------------------------------
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--------
>chr4D_932
ATTTGA--------------------------------------------------------------------------
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-------------------------------------------------------------------------TTTTGCC
GCTGGCTTTCCCGTCCAACGCCGCCGGTCTCCTCTCGCCGGCTTCCGGCTAGCATATGTGGACGGGCACCCCGTACTCCT
TCGCCGTCCTCGAACGCCTCCTCCAGGATCACTTCTCCGCCCCTCGCCGCCTCCTCCAGGTCCATCCCCTCCTCCTCACC
TCCGGCGCGCTCTCCACCTCCCACGCCGCCGCCACCTTCCCCTACAACTGCCTCATCCATGCCCACCTCCGCCTCCCCGC
TTCCACCGTTGCCCCGCTATGCGCCCCCCTCCGCCTCTTCTCGTCCATGCTCGCCGCCGGCGCGCGCCCCAACGGCCACA
CGTTCCCTTCCCTCCTCAGGTCCGCCTCCGCCTCCGGACCAGCCACCGGGGCCCTCCACTCGCAGTGCCTCCGCCGCGGG
CTTACGGCCGATCGCTTCGTTGCATGCTCGCTCGTTAGCTCCTATGGCCGAGCTGGCCGTCTCGCGTGTGACGCTTCTAA
GGTGTTTGATGAAATGGCCAGCCCGGATCTGTCCTCCTCTAACGCCATGCTTGATGTGCTGTGCCTCGCCGGGGACGTGG
CTGTGGCTAGAGAATTCTTTGAGCGGATGGTGGTGAGGGATGTGGTGTCGTGGACGACGCTCATCTCCGGGTTATCCAGG
AATGGGTGCCACTGGGATGCTGTTGAGGTCTTCAGGGGATTGTTGGTGGACAACAAGGGGCAGCTCGGGGAGGCCACATT
GGTCAGCGTGCTATCGGCTTGTGCAAATTTGGATGGTGCTGAGGGGCTTGCGGTTGGGACAGCTGTTCACGCCTATGTTC
TTCGGCATGAGGTTGACCTCACAGCGTTCTTGGGCACGGCGTTGATCGACATGTATGGGAAGTATGGGAAGCTCGACTGT
TGTAGGAGAGCTTTTCAGATTGTATGCGAGAAGGAGGTCTGTACGTGGAATGCACTCCTCTCTGCACTGGCTAATCATGG
GAAAGAGACTGAAGCACTGGTCAAGTTCAACATGATGATAGTTGGAGGGTTCTTGCCAAATCAGATTACATTTCTTGCTC
TACTGACAGGTTGTGCTCGAGCAGGATTAGTGGAGATTGGGTTATACTGGTTCGAGACGATGGTGACTGAATACAAGGTG
ACTCCGATGATGGCCCATTATGGATGTGTTGTGGACCTGTTAAGCCATGCTGGCCGTTTTATGGAGGCCATTGAGAAGAT
AGAGCGGATGCCCTTTTTGCCTGATGCTTCTGTCTGGGGCGCGCTTCTTGGTGCTTGCAAGCTCCATGGAAATGTGGAGC
TTGTTGCTGAGATTGGGCGAAAACTAGTGGCTCTTGGTCCTCAGCAATCCGACCGGTATGTGACTATCAGAAATATTTAT
CTAGAAAATGGGAATTGGTGTGCTGCGACGAGAATGGGTGAGGTGATGCATGAGGCCGGGATCAAGAAGACAGCAGGGCA
AAGCAGTGTTGTGTTTCACAGCTCTGCCATTACTTGACTAGAGTTTGTTTGTTGCAAATATTGCTCTTCTGGGACTACCG
TTTGTTTCTCATGATTTGTATCTT-TAGGAAAATACTAAACCACATCTTGTTGT---TC--AAGCTTATAACAAATATTT
GACGTAATGAAGAATCAAATTTTTATTCACTGCATTGTGCGG--GTCACCTTTGATTTGCAAGGTTGCAAAAAGGCAGTA
TCAGGAAAAGCACAGAATTGTACTGGCATGTCCAC---TCAAAACCTATAAAATTTTGTTTGCACCAAAGTAGTGTATTT
GATTATACCACTGGTAAAACAAAAAGATTCTTTGCAAGAGGTTTGACTGAATGAAAAATTCCTA----------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------
>SNPs
S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-----------
-------------------------------S-----------------S----S---------S-SSS-SSSSS-S-SS
-SSS---------------S-S------------S----S---------S-----------------S------------
------------S--S---------S--------------------S--------------------S-----SSS----
-----------------------------------S--------------------------S--------------S--
-------------------------------S----------------------------S-------------SSSSSS
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------SS------------SS---S----S-
---S---SSS-SSSSS-SSS-S----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------SS------SSSSS---S-SS-S-S-SSS------SSSSSSS-SSS-SSSS-SS-S--SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------
------S------------------S-------------------SS---S-----------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
-------S-------------------------------------------------S----------------------
-----------------------------------------------------------S--------------------
-------------------------------------------------S------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
------------------------------------------------------------------------------S-
------------------------S--------------------------S--------------------S------S
---------------S-S----------------------S----------------------------------S----
---------------S-----------------------------------S----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
---------S--------------------------------------------SSS-----------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----S-----------------------------
--------------------------------------------------------------------------------
------------S------SSSSSSSSSSSS------------S------------------------S-----------
------------------S-------------------------------S--S-------------------------S
---S-------------------S-----------------S--------------------------------------
----S-----------------------S---------------S--------S--------------------------
---S--------------SS-------S----------S---S-----S------------S------------------
--S-----------------------------------------------------------------------------
------------------SSSSSSSSSSSSSSSS------------------S---------------------S-----
---------S-----------S------------------------SSS-------------------------------
--------
>forward_29
---------TGGTCGTTGTACCATGGACG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------
>reverse_2656
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------TCTTCACAGCGTTCTTGGGC---------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------
>forward_1474
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------CCGCCTCATGGTGTTGTTTG----------------------------------------------
--------------------------------------------------------------------------------
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--------
>reverse_2658
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------TTCACAGCGTTCTTGGGCA--------------------------------------------
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--------
>forward_1475
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------CGCCTCATGGTGTTGTTTGG---------------------------------------------
--------------------------------------------------------------------------------
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--------
>reverse_3032
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------CGAGAAGAT
AGAGCGGATGCC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------
>forward_1476
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------GCCTCATGGTGTTGTTTGGT--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------
>reverse_3571
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GAATTTTGTTTGCACCAAAGTAGTGT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------
