>input_sequence_52037
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-----------------------------------------------------------------------ATGGCCTCC
CCACCGGGCCCCGCCCGCCTCGCCGCCCTGCTGCTCCTTGCGCTCCTCGCCGGGCCCGCCGCGTCCCGCTTCGCCCCGGC
GGACAACCACCTCATCGCCTGCGGCGCGACGGCCCCGGCCGTCCTCCCCGACGGCCGCCGCTTCGTCCCGGACTCCGGCT
GCGCCTCCATGACCCTCCGCTCCGCGGCGCCCGCTCTCCCGTCCGCCGCCCCCGGCGCGCCCGCGCCCGCGCCGCCCTCC
CCTCTCCACGCCGCCGCGCGCGTCTTCTCCTGCCACGCCTCCTACGACCTCGCCGTGCGCCGCCGCGGGCGCCACGTCCT
GCGCCTCCACTTCTACCCCTTCAGCCCCGCCCTCGCCTCCGCGTGCTTCCACGTCGGCGCCGGGGGCTTCCTCCTCCTCC
ACAACTTCACCGCCCCGTCCCCCGTCGTCAAGGACTTCCTGCTCCCCGTCGACGCCGACGTCCTCGTCCTCACCTTCGTC
CCCGAGGCCGGATCCGCCGCCTTCGTCAACGCCATCGAGCTCTTCTCGGCGCCCGACGAGCTCGTCGGCGACATCGGCAC
CCTCGTCGCCGCTGCCGGCGTCAACCGCACCGACGGGCTATCCTCGCAGGTCTTCGAGACGCTCTACCGGATCAACGTCG
CCGGCCGCAAGGTCACCCCGTTCAACGACACGCTGTGGCGGACATGGGTCAACGACGAGGGCTTCCTCGTCAGCAAGGAA
TCGTCCAGCAGCAAGGCATGGTCATTCGGTGGCCGGATTGCTTACCCCAAGGACAGCAGGTTGATGACCCGGGAGGTGGC
TCCGGACAACGTCTACAACTCGGCGAGGTCGGTGAGGTCCGACGGCAATTTGACATGGGATTTCCCTGTGCCCGCTCGCA
ACCGGTACCTTGTGCGCATGCACTTCTGTGATATTGTGAGCAAGGCATTGTATCAGCTCTACTTCAGTATCTATGTCAAT
GGTCATCTCGCAGCGAAGGATTTTGACATTTCCAGCACCACTGGATACTTGGCCTATCCGTATTACATCGACTATGTTGT
GGACGTTGACGATGAAGGGATGCTGAAACTGGCCATCGGTGGCTCGAAGATGAGCCGACCTGGAGAGG------------
---------------------------------------------------------------------------CGAGC
GGTTTCCTGAATGGGCTGGAGATAATGAGGATGAACAAAACGGGTGGCGGCATGGACGTGGATTTCCCTGCTGTTCTGGA
CATGGGGTACCTGGTCAGTAAGGGGTTTGGGGAATTCGCTCGCTCACTGCTGTGTGGTTTAGTCTTCGCCGGGCTGTTTT
TGGTTTTTGTCATGCTGGTGCTGAGGTTGAGGACTGAGCTGAAAAATAATGGCACGCTTTGGTTCAGCCAGTCAATGGAT
TCTGGTGACGGGAAGTTGGCTAAAGCATATCAGCTTGTGCCCACCAAGACAGACTATTAA--------------------
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>chr4B_1_TraesCS4B01G345200
GCGGAGTTGCGTCGCACGACGACAATGGTAGAGGCGGTGGACGCGCATGCAATGTCGTCGGGGATCTCCTCCTCGCCCTG
GCTTCGGGCGGATGCAGAGGAGGCAGCAACACGCGGGGGTTGCAACAACGGCTGGTTTTGCCTGACACATGTCGACAATC
TAACGGCCGCGCATAATTGCATCCTATGCTTGTTTAGGCAGTTGTCAACATCTGGTTTAGTAGGCGGATGACGCCTAACA
GTCGCCTATAAATGTCCACCTACATACGCGATGTAGATGAGCCAACACAACATGGGTGAGGGCAACTCCAACGCACAACC
CAAAACGGACGCTCGTTTTGACCGGTTTTGTCCGTTTGGGGTGGCAATGGGGCGGCGTCCGCCCGGATTTCTGGACGTGC
CGGCAGTACGCCCAACGGGCGAACGCATCTCGTCTGCATACATTTTTTTGCCGCAGTTCTTCTTTTTTTCATCAGCGATT
TTTTGATACATTTGAGTACATTCACCGAATCTTGACTAGAATAGAAAGACTAAAGAAAAGAAGAACCACAAGATGACAAG
AAGACATGTTAAAAGATACCCAATTTCCATAACTGCTTTCGCAAGCTGGATTAGTATCTTCTCAATGCCTTCATTGTTGC
CACGGATTCTCGATCTTGCATACTTCTTTCTTCTTCGGGTCTAAAGAAGTAGACATTGGCTCATGCGGGCGGATCAGACA
GCAGTCATGCGCGGATCCAACGGTCGCGAGGCGGCCGATGCGATGTGCGCTTCTGCCGGCCGACGCATAGCATCGTTCCG
CCGGCGTGTAAAAAGCCAACCGACACGGCGATAC----------GCCGCGTTGGTGTGTCCCACCCACCACCCCACCGGC
CCAAAGT-------CATCTTCCACGCGCTGGCCGGCCGGCCGAATTGATTCCAAGTCCAACTCTGAGCTGTTCCCCATCG
CCATTTTCCGTCTCCATTTCTCCCCACCTTCTCCGACCCCCAAATC--------------CCCCCGCCGCCATGGCCTCC
CCACCGGGCCCCGCCCGCCTCGCCGCCCTGCTGCTCCTTGCGCTCCTCGCCGGGCCCGCCGCGTCCCGCTTCGCCCCGGC
GGACAACCACCTCATCGCCTGCGGCGCGACGGCCCCGGCCGTCCTCCCCGACGGCCGCCGCTTCGTCCCGGACTCCGGCT
GCGCCTCCATGACCCTCCGCTCCGCGGCGCCCGCTCTCCCGTCCGCCGCCCCCGGCGCGCCCGCGCCCGCGCCGCCCTCC
CCTCTCCACGCCGCCGCGCGCGTCTTCTCCTGCCACGCCTCCTACGACCTCGCCGTGCGCCGCCGCGGGCGCCACGTCCT
GCGCCTCCACTTCTACCCCTTCAGCCCCGCCCTCGCCTCCGCGTGCTTCCACGTCGGCGCCGGGGGCTTCCTCCTCCTCC
ACAACTTCACCGCCCCGTCCCCCGTCGTCAAGGACTTCCTGCTCCCCGTCGACGCCGACGTCCTCGTCCTCACCTTCGTC
CCCGAGGCCGGATCCGCCGCCTTCGTCAACGCCATCGAGCTCTTCTCGGCGCCCGACGAGCTCGTCGGCGACATCGGCAC
CCTCGTCGCCGCTGCCGGCGTCAACCGCACCGACGGGCTATCCTCGCAGGTCTTCGAGACGCTCTACCGGATCAACGTCG
CCGGCCGCAAGGTCACCCCGTTCAACGACACGCTGTGGCGGACATGGGTCAACGACGAGGGCTTCCTCGTCAGCAAGGAA
TCGTCCAGCAGCAAGGCATGGTCATTCGGTGGCCGGATTGCTTACCCCAAGGACAGCAGGTTGATGACCCGGGAGGTGGC
TCCGGACAACGTCTACAACTCGGCGAGGTCGGTGAGGTCCGACGGCAATTTGACATGGGATTTCCCTGTGCCCGCTCGCA
ACCGGTACCTTGTGCGCATGCACTTCTGTGATATTGTGAGCAAGGCATTGTATCAGCTCTACTTCAGTATCTATGTCAAT
GGTCATCTCGCAGCGAAGGATTTTGACATTTCCAGCACCACTGGATACTTGGCCTATCCGTATTACATCGACTATGTTGT
GGACGTTGACGATGAAGGGATGCTGAAACTGGCCATCGGTGGCTCGAAGATGAGCCGACCTGGAGAGG------------
---------------------------------------------------------------------------CGAGC
GGTTTCCTGAATGGGCTGGAGATAATGAGGATGAACAAAACGGGTGGCGGCATGGACGTGGATTTCCCTGCTGTTCTGGA
CATGGGGTACCTGGTCAGTAAGGGGTTTGGGGAATTCGCTCGCTCACTGCTGTGTGGTTTAGTCTTCGCCGGGCTGTTTT
TGGTTTTTGTCATGCTGGTGCTGAGGTTGAGGACTGAGCTGAAAAATAATGGCACGCTTTGGTTCAGCCAGTCAATGGAT
TCTGGTGACGGGAAGTTGGCTAAAGCATATCAGCTTGTGCCCACCAAGACAGACTATTAAGCATCATGAGATTTGAGAAG
CTTCAAATTGTGTCTGTTATCTGTATCTGATGACATAATCTTGTGCTTCGGTTGTAAGTATTGTAGTTTACTAGTTTTAC
ATTTCTACGCCTTTCATGGTTGAAGTTTCAATTGTTTGAGCTTGGCCAGTGCAGAACACAACTACTGTGTGTACTTAAGA
ATTAAGATGTGTTTGTATTGCTACTACTTCGCTTACCTCTATCCAGTAATTGAAATATCATCGAATACCTGTCTGTGATG
TCTTTATTTATTTTATCATGGTAGTATGGTACTATAATTCCATTATGCACTTAGGAGAATCCTTCATGTGAAATGATTAG
TTATATTGAAGACATTACTGGAAGCAAAATATTTCTTACAACTGGAGAATGATTTAGTTGTTGTGAGGGGGAATCTGTTG
GTTCAAACCAATT----------------------------------------AAGGAGTACTTGCAATGTTCCTTGTAG
TCATCTCATCAGTAGGCACATCTGTAGTCTGGACTATTTGCGGAACCATGTC---------TAGCTAGTTGAATACTTGA
ATTTATGTTTGACCCCGTGGTGGATTTAGTCTTAGTGCCTACCAGATTATGATGCCTTGGGAATTTCT-TCTCATACTTT
GCCAAT-----TTTTTTTGTGTGTGTGTTTGTGTTTGTGCAATGTAACGTTTTTTTTATCTACCCAGCACTAAATGAAGC
ACTAAAATGTAATAAATGAATCACTAAGTGAAGCAGAGGAATACCTATATTATCCATTGTTTTCTTCAGTATGATGCATT
TTTTGCATTCGTACAGTTTCATTCATCAGACTAATAAAATGAGAATCTTGAATGCATTAGCATTAGTAGATCTTAGATTT
TAGAAAAACTAGTAGATGTCAGGTAAACGGTATTAATATAATTTTCTGATCCCTTCACTTTGGAGAGCACTTCTTTAAAA
AAGGGCAACCTGGTGCATGTAGCTCCCGCTTGCGCAGGGTCCAGGGAAGGGTCCGACCACTTTGGGTCTATAGTA
>chr5A_1
GCGGAGTTGCGTCGCACGGCGGCAATGGTAGAGGCGGTGGACGCACATGTAGTGTCGCCGGGGATCTCCTCCTCGCACTG
GCTTCGGGTGGATGCAGAGGAGGAAGAAACATGCGGGGTTGCAA------------------------------------
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----------------------CAACGACCAGTTTTGCCTGACACGTGTCGACAATCTAACGGCCACGCATAATTGTATC
CTATGGCTGTTTAGGTTT------------------------------------AGCAGGCGGATGACGCCTAGCTGTCG
CCTATAAATTTCCACC----------------------------------------------------------------
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---------------------------------------------------------------TACATACACGATGT---
-----------------------------------------------AGATGAGCCAGCACAACATGGGTTAGGGCAACT
CCAACACACGACCCAAAATAGACGTCCATTTTGACCGAATTTCGTCTGTTTGGGGGGTGGCAATGGGGCAGTGTCCGCCT
GGATTTCTGGATGTGCTGGCCGTACGCCCAACGGGCGGACATATCTCGTCCGTATAC-----------------------
------------------------------------------------------------ATTTTTCGCCGCAGTTCTTA
TTATTTTCATCAACGATTTTTTAT--------------------------------------------------------
--------------------------------------------------------------------ACATTTGAGTAC
ATTCACCAAATCTTCACTAGAATAGTAAGACCAAAGA-------------------------------------------
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----------------------------------------------------AAATAAGAACCAAA--------------
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------AGAAGACATTTTAAAAGATATCCAACTTCCATAACTGCTCCCGCAAGCTAGATTAGTATCTTCTCGATGCCTTC
ATTGTTGATCTACGGATTCTCGATCTTGCATACTTCTTTCTTCTTCGAGTCTAAAGAAGTAGACATTG------------
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>chr5A_805
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----CGTGTAAAAATCCAACCGACACGGCGATGGGCGATACACAGCCGCGTTCGTGTGCCCCACCCACCACCCCACCGGC
CGAACTCCATTACCCATCTTCCACGCGCTTGTCTGCCGGCCGAATCGATTCCAAGTCCAACTCTGAGCTGTTCCCCATCG
CCATTTTCCGTCTCCATTTCTCCCCACCTTCCCCGACCCCCAAATCCCCACGCGAATCCGCCCCCGCCGCCATGGCCTCC
CCGCCGGGCGCCGCCCGCCTCGCCGCCCTGCTGCTCCTCGCGCTCCTCGCCGGGCCCGCCGCGTCCCGCTTCGCCCCGGC
GGACAACCACCTCATCGCCTGCGGCGCGACGGCCCCGGCCGTCCTCCCCGACGGCCGCCGCTTCGTCCCGGACTCCGGCT
GCGCGTCCATGACCCTCCGCTCCGCGGCCCCCGCCCTCCCGTCCGCCGCCCCCGCTGCGCCCGCGCCCGCGCCGCCCTCC
CCTCTCCACGCCGCCGCGCGCGTCTTCTCCTGCCACGCCTCCTACGACCTCGCCGTGCGCCGCCGCGGGCGCCACGTCCT
GCGCCTCCACTTCTACCCCTTCAGCCCCGCCCTCGCCTCCGCGCGCTTCCACGTCGGCGCCGGGGGCTTCCTCCTCCTCC
ACAACTTCACCGCCTCGTCCCCCGTCGTCAAGGACTTCCTGCTCCCCGTCGACGCCGACGTCCTCGTCCTCACCTTCGTC
CCCGAGGCCGGATCCGCCGCCTTCGTCAACGCCATCGAGCTCTTCTCGGCGCCCGAGGAGCTCGTCGGCGACATCGCCAC
CCTCGTCGCCGCTGACGGCGTCAACCGCACCGACGGGCTCTCCTCGCAGGTCTTCGAGACGCTCTACCGGGTCAACGTCG
CCGGCCGCAAGGTCACCCCGTTCAACGACACGCTGTGGCGGACATGGGTCAACGACGAGGGCTTCCTCGTCAACAAGGAA
TCATCCAGCAGCAAGGCATGGTCATTCGGTGGCCGGATTGCTTACCCCAAGGACAGCAGGTTGATGACCCGAGAGGTGGC
TCCGGACAACGTCTACAACTCGGCGAGGTCGGTGAGGTCAGACGGCAATCTGACATGGGGTTTCCCTGTGCCCGCTCGCA
ACCGGTACCTCGTGCGCATGCACTTCTGTGACATTGTGAGCAAGGCACTGTATCAGCTCTACTTCAGTATCTATGTCAAT
GGTCATCTCGCAGTGAAGGATTTTGACATTTCCAGCACCACTGGATACTTGGCCTATCCGTATTACATCGACTATGTTGT
GGACGTTGAGGATGAAGGGATGCTGAAACTGGCCATTGGTGGCTCCAAGATGAGCCAGCCTGGAGAAG------------
---------------------------------------------------------------------------CGAGT
GGTTTCCTGAATGGGCTCGAGATAATGAGGATGAACAAAACGGGTGGCGGCATGGACGGGGATTTCCCTGTTGTTCTGGA
CATGGGGTACCTGGTCAGTAAGGGGTTTGGGGAATTCGCTCGCTCACTGCTGTGTGGTTTAGTCTTCGCCGGGCTGTTTT
TGGTTTTGGTCATGCTGGTGCTGAGGTTGAGGACCGAGCTGAAAAACAATGGAACGCTTTGGTTCAGCCAGTCAGTGGAT
TCTGGTGAGGGGAAGTTGGCTAAAGCATATCAGCTTGTGCCCACCAAGACAGACTATTAAGCAGCATGAGATCTGAGAAG
CTTCAACTTGTGTCTGTTATCTGTATCCCATGGCCTAATCTTGTGCTTCGTTTGTAAGTATTGTAGTTTTCTAGTTCTAC
ATTTCTATGCCTTTCATGGTTGAAGTTTCAATTGTTTGAGCTTGGCCAGTGCAGAGCACAACTATTGTGTGTACTTAAGA
ATTAAGACGTGTTTGTATTGCTACTACTTCGCTTACCTCTATCCAGTAATTGAAATATGATCCAATACCTGTCTGTGATG
TCTCTATTTTTTGTATCATGGTAGTATGGTACTATAATTCCATTATACCCTTAGGAGAATCCTTTGTATGAAATGATTAG
TTATGTAGAAGACATTACTGGAGGCAAAATATTTCTTACAACTGAAGAATGATTTAGTTGTTGCGAGGGGGAATCTGTTG
GTTCAAACCAATT----------------------------------------AAGAAGTAGCTACAGTGTTCCTTGTAG
TCATGTCATCAGTAAGCACATCTGTAGTCTGGACTATTTGCGTAACCATGTCCCACAAAATTAGCTAGTTGAATACTTGA
ATTTATGTCTGACCGCGTGGTGGATTTAGTCTCAGTGCCTACCAGATTATGATGCCTTGGGAATTTCACTCTCATACTTT
GCCTATTATTGTTTTTGTGTGTTTGTCTTTGTGTTTGTG-----------------------------------------
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--------------------------CAGACTAATAAAATGAGAAGCTTGAATGCATTAGCACCAGTAGATCTTAGATTT
TAGAAAAACTAGTAGATGTCAGGTAAGCGGTATTAATAGAATTTTCTGACCCCTTCATTTTGGAGAGCACTTCTTT----
---------------------------------------------------------------------------
>SNPs
------------------S--S----------------------S----S-S-----S------------------S---
--------S--------------S--S----S------S-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS----------S-----------------SS------------------S-----S---------------------
-S--SSS----------------------S-S-S-----------S----------------------------------
-------------------------------S------------------------------------------------
--S------S----------------------------S-----------------------------------------
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----S-----------------------S-----S-------------------SS------------------------
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-------------------------------------------S------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------S-------------------S---
--------------S------------------------S------------------------------S---------
------------------------------------------------------------------------S-------
--S--------------------------------------------------------------------S--------
---------------------------------------S---------S---------S--------------------
----------S--------------------S---------------S--------------------------------
-------------S------------------------------------------------------------------
---------S--------------------------S--------S----------SS----------------------
-------------------------------------------------------------------------------S
----------------------------------------------------------S-----------S---------
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-------S--------------------------S-----------S-----S---------------------S-----
--------S------------------------------------------------------S----------------
------S--------------------S----------------------S------------------S------S---
-------S-----------------------------------------------S--------S---------------
-------S--------------------------------------------------S---S-----------------
---S-----S--S---------------------------------S-S---------------SS-S------------
----S-S---------------S---------------------S------------------S----------------
--------------------------------------------------------S----SS-S--S------------
----S---------S---------------------------S-------------------------------------
--------S-----S-----------------S----------------------------------S------------
---S------------S-----S---S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S----------------SS----------------
--------------------------S-----------S----------S-------S------------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_349
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---------CGCTCGTTTTGACCGGTTTT---------------------------------------------------
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>reverse_2126
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---------------------------------------------GAAGATGAGCCGACCTGGAG---------------
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>forward_653
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-------------------------------------------------------------------------TTGTTGC
CACGGATTCTCGA-------------------------------------------------------------------
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>reverse_2408
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-------TGTCATGCTGGTGCTGAGG------------------------------------------------------
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>forward_1763
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---------------------------------------------------------------TCCTCGTCAGCAAGGAA
TCG-----------------------------------------------------------------------------
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>reverse_3565
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--------------------------------------------GGAAGGGTCCGACCACTTTG-----------
