>input_sequence_51980
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-----------------------------------------------------------------------------GCA
T---ATAAGACGCGAGCCGGCATCGCACTTTGCTTCATCCACCACCAAACTCTCATTTCACCCAGCACCTACGCAAGCAA
GAGACAAGCAAA-----------CTTGAC----CCTCCGGTCGAGCAACCACGCCAGCCAGAGCGCGCCGCACCTCCACC
TCGCCGCCGAGCA----CCCAGCACACGAGCC-GCCCGGCCATGGAGGTGGAGGCGTTCCCGATTGGGTTCACCAAGGGC
GTGCGCGCGCACTGGCGCCGCCGCAAGTACCAGCGCCTGGAGGCCGGCGAGGGCGGCGGCAGCAGGTCCCAGGGCACGCA
GCGCCTCGGCGGCTCCGGCGCGCGTCGCGTCGGGTGGCGCGTGCGGCTGCGCGGGCTTCTCATCCGGCGCGCGCGCGCCT
TCCGCGCGATCGTGACGGCGCCGCGGCGGCTGCTGGCGCGCGCGCGGGACGCGTACGTGGGCGGCATGCTGGCCGTGGCC
CGGAAGGCGTCGGCCACGGCGCTGCCCGGCGGCGGGCCCGAGGGGATCTGGGCCAGGCGCGTGCCGCGGCGGAAGCAGCT
GCCCTCGGCGACGGCGGCGCGGACGTCCGAGTTCGAGCAGCGGCTGGTCATGGAGATCTACAAGTCCATCGTCGCGTCCA
AGGAGCTCACCACCATGCTCCACTCCTCCACCGCGCACCTGCAGCCGCCGCCCGCGCGCGCCTAGCTTCCCCAAGGCGGT
TGC-----------------------------------------------------------------------------
----------------------TGAAGCGAGGTTTTTCAAGATGATCGTCTTCTCTCTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTCTCTCTCTCTCTCTCAGCAGGTGC
TGCTACGAAGCGGCGGCACTGTTCATTAGTTGTACTGTAGTAACTTGCTGTAAGAATTGTAGAAATCGATCCTGATTAAG
CTGTTCAAACAATTTGGTATGCTTGGTGTCATTGTCAAGGCAAACTTCTCCATGGCTGCGTTCATAACTATCTGTGTGAA
AAGTCGAATGGTCCAACTACAGGATA----ATAACAGGAAGGCGTGTA---TGACTGGAAAAGCTCGGTATTCTTCCCAT
GTGTTTG-------------------------------------------------------------------------
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-------------------------------------------ACAAAAACAGAGCATGCATGGTA--------------
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>chr1A_1_TraesCS1A01G414700
TAGTCGTACCTACGAGCAAGTTCCTCC-------AACTTTCATCGTCAATGACTAGAGCACCCACCGACCACCAAAGTAA
GCTCACGTCTGCGGGG-----------------TGCGTTAGGGCATGTACAACCCGGGCACTGAGCATGGTACGCTAGGG
ACTGGAGAGCAATGATACACGTACGGATGAGTTATGTATGTTTTATGCAGGCAGTCGACAACTTTTGATTGGAAATAGA-
--GGGGGTGGGGATGTGCCCCACTCGTAAAATTCAGCCGAATGAGATAATTTGTCGAAAGATTATGTAAGGGCATCTCTA
AATCGGACTCTCAGACTGCCTGCATACGTACAGACCACGCGGTTT-----------GCCATCCAACACAGGTTTGTATTA
GTCTGCCAAGCAGTCCGGATGTACTTTTTCCGAAAAATAAGAGTCAAACAGGGGTGCTTAGCAGGAGTGCAAACAACAGC
CATATAGGACT------CCGACACCTCAAACCCACCCAAAACTCAGG-------------------------TTGAGCTG
CAT-GGGACAACGGTTCGACTGGTGGCTGCGCGGGAGAGGGATGACG-----GGCTGGAGGAAGAGGAAGAA-AGGGGAA
AATGTGATTGAAATAA--AAAAAATGT-TAGGCGATTGAGAAATAGTTGCCGCCAAGCAAACTC-CACTGGTCA------
--------------------------------------------------------------------------------
---------------------------------------GCCGTCATATCAACACACACA----AGTGCATTAAAATGTG
AAGCAACGGAATCTTCAACCGACGAGTTTAG---TCATCCATCCAGGCTGCCAT-------------CTTCTAGACGTTC
-----AACACTGCTGCAT--------TTTACTTGTGATATGCTG-----------GCCATGCACGTACGCATG----ATC
GAGGCGAGTGAATGAA-CGAAAGAAAGAAAACGACCTTG----GG----CTATCCACAGCAACCCACGCCGAGCACCACC
AAGTCACCAACCACGGCGTCGACGAGTGAATTCAACGTGGCCACAGCC-------GCGAAAACGGCATCAAATCCCCATG
ATTTTGTCACCGGTCACCACCAGTCG--------CACACACAACCCCCACCAACCACGGCCGTAGCTCCCCGCCCCTGCA
T---ATAAGACGCGAGCCGGCATCGCACTTTGCTTCATCCACCACCAAACTCTCATTTCACCCAGCACCTACGCAAGCAA
GAGACAAGCAAA-----------CTTGAC----CCTCCGGTCGAGCAACCACGCCAGCCAGAGCGCGCCGCACCTCCACC
TCGCCGCCGAGCA----CCCAGCACACGAGCC-GCCCGGCCATGGAGGTGGAGGCGTTCCCGATTGGGTTCACCAAGGGC
GTGCGCGCGCACTGGCGCCGCCGCAAGTACCAGCGCCTGGAGGCCGGCGAGGGCGGCGGCAGCAGGTCCCAGGGCACGCA
GCGCCTCGGCGGCTCCGGCGCGCGTCGCGTCGGGTGGCGCGTGCGGCTGCGCGGGCTTCTCATCCGGCGCGCGCGCGCCT
TCCGCGCGATCGTGACGGCGCCGCGGCGGCTGCTGGCGCGCGCGCGGGACGCGTACGTGGGCGGCATGCTGGCCGTGGCC
CGGAAGGCGTCGGCCACGGCGCTGCCCGGCGGCGGGCCCGAGGGGATCTGGGCCAGGCGCGTGCCGCGGCGGAAGCAGCT
GCCCTCGGCGACGGCGGCGCGGACGTCCGAGTTCGAGCAGCGGCTGGTCATGGAGATCTACAAGTCCATCGTCGCGTCCA
AGGAGCTCACCACCATGCTCCACTCCTCCACCGCGCACCTGCAGCCGCCGCCCGCGCGCGCCTAGCTTCCCCAAGGCGGT
TGC-----------------------------------------------------------------------------
----------------------TGAAGCGAGGTTTTTCAAGATGATCGTCTTCTCTCTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTCTCTCTCTCTCTCTCAGCAGGTGC
TGCTACGAAGCGGCGGCACTGTTCATTAGTTGTACTGTAGTAACTTGCTGTAAGAATTGTAGAAATCGATCCTGATTAAG
CTGTTCAAACAATTTGGTATGCTTGGTGTCATTGTCAAGGCAAACTTCTCCATGGCTGCGTTCATAACTATCTGTGTGAA
AAGTCGAATGGTCCAACTACAGGATA----ATAACAGGAAGGCGTGTA---TGACTGGAAAAGCTCGGTATTCTTCCCAT
GTGTTTG-------------------------------------------------------------------------
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-------------------------------------------ACAAAAACAGAGCATGCATGGTAGTAAAACAGAGTAT
TCATGGATGGAACTGCGGTTTACACGTGGTCCCTTCCATGTCAACGCATGCATGTGGATGCGTACTGTTCATCTAGAAAC
TTTAAATAAGGCAGGGCTCAACTGAGTGTGACTTCAAAGCAGCTTCTTGGTACTACTGTATTTCACGTGCTGTTCATCTA
GAAGCTTTAGCATAAGAGCATCTACAGCAGGCCGCCCCAAATCCTTCTCAAATA--------CCCGCCCGGTCACTGACC
GGTCACGATTTTTCTGTCTAGACAGACTTCTCAAACAGGCCTCAAACACCATGTAATTGCTTTACTTTATCATTAAGCGG
TAGCAATAGTCGTGGAAGCAATAGTTGGCGAGACGACAACGATGCTACGATGGAGATCATGACGGTGCTTTGAAGATGGA
GATCAAAGGCACAAAATGATGATGGCCATATAATGTGACATATTTTGATTGCATGTGATGTTTATCCTTTATGCATCTTA
TTTGGCTTAGTACGGCGGTAGCATTATAAGATGATCTCTCACTAAA-TTTCAAGGTATCAGTGTTCTCCCTGAGTATGCA
CCGTTGCTACAATTCATCGTGCCGAGACACCACGTGATGATCGGGTGTGATAAGCTTTACGTTCACATACAACGGGTGCA
AGCCAG-TTTTGCACATGCAGAATACTCGGGTTAAACTTGACGAGCCTAGCATATGCAGATATGGCCTCGGAACACTAAG
ACCGAAAGGTCAAACATGAATCATATAGTAGATATGATCAACATAGAGATGTTCACCATTGAAAACTACTCCATCTCACG
TGATGATCGGACATGATTTAGTTCATATGGATCACGTGATTATTTAGATGACTAGAGAGATGTCTATCTAAGTGGAAGTT
CTTAAGTAATATGATTAATTGAACTTT-AATTTATCATGAACTTAGTACCTGATAGT-TTTTGCGTATCTATGTTGTTGT
AGATCAATGGCATGTGCTACCGTTCCCTTGAATTTTAA
>chr1A_1
TAGTCGTACCTACGAGCAAGTTCCTGGTAGGAGTAACTTTTATCGTCAATGACCAGAGCACCCACCGACCACCAACAGAA
GCTCGCGTTTGCGTTTCTTCAGAGATGACCTGATGCGTTAGGGCATGTACAACCCGGGCGCTGAGCACGGTACGCTAGGG
ATTCGAGAGCAATGCTACACCTACGGATGAGTTACGTATGTTCTATGCAGGCAGTCGGCAACTTTTGGTTGGAAATAGGG
GGGGGGGTGGGGATGTGCCCCACTCGTAAAATTCAGGAGGGCGAGATAATTTGTGGAAAGGTTACGTAAGGGCATCTCAA
AGGCAGACTCTCAAACCGTCTTCATACATACAGACTGCGCGGTTTGGACACAGTTTGCCATCCAACACGGATTTGTATCA
GTTTGTCGAGCGGTCCGAATGTATTTTTTTTGTAAACTTGATACAAGAGTGGTGGGCTTTACGAGAGTTCGGACAACAGC
TACGTAAGACTGAGTGACTGACACCCACGGCCTACCCAAAACCTTTTCCGGCACGACAAACCCTGTTGGCCTTTGAGTGG
CAT-GGGACAAGCGTTTGACTGGTGGCTGCGCGGGAGAGAAGTGACG-----GGCAGGAGGAAAAGGAAGAC-GAATGGA
AGAGTGATTGAACTAG--AAACAAAAT-TAGGAGATTGAGAAATAGTTGCCCCCAAGCAAGCCA-CACCGGTCAAGATGA
TATGCCGGCTCAGTCTCTCGGAGGTGCTCATAGGGGTAGGGTATGCGTGTGTGCGTTCATAGGGGTGAGTGTATGCGTGT
GTATATGAGCGTCTGTGTCTGTACTGATGGTAAAAAAAAGCAGTCAAATCAACACGTACGTACGAGTGCATTAAAATGTG
AAGCAACGGAATCTTGAACCAACGAGTTTAG---TCATCCATCCAGGCTGCCAT-------------CTTCTAGACGTTC
GGTTTAACACATGGTAACATGGTGCATTTACTAGTGATATGCTG-----------GCCATGCACGTACGCATGGTCGATC
GAGGCGAGTGAATGAA-TGAAATAAAGAAAACGACCTTG----GGCTGGCTATCCACGCCAACGCA-----CGCACCACC
AAGTCACCAACCACAACGTCGACGAGTGAATTCAACGTGGCCACTGCC-------GCGAAAACGGCATCAAATCCCCATG
ATTTTGTCACCGGTCGCACACC--------------CACACAACCCCCGGCAACCACGGCCGTAGCCCTCCGCCCCTGCA
TAAAAAAAGACGCGAGCCGGCATCGCACTTCGCTCCATCCACCACCAAACCCTCATTTCACCCAGCACCTACCA------
-------------------------------------CGGTCAAGCAGCCACGCCAGCCAGAGCGCGCTGCACCCCCACC
TCGCCGCCGAGCAAGCACCCAGCGCACGAGCCGGCCCGGCCATGGAGGTGGAGGCGTTCCCGATCGGGTTCACGAGGGGC
GTGCGCGCGCACTGGCGCCGGCGCAAGTACCAGCGCCTGGAGGCCGGCGAGGGCGGCGGCAGCAGGCCCCAGGGCACGCA
GCGCCTCGG------CGGGGCGCGGCGAGTCGGGTGGCGCGTGCGGCTGCGCGGGCTTCTCGTCCGGCGAGCGCGGGCCG
TCCGCGCGATCGTGATGGCGCCGCGGCGGCTGCTGGCGCGCGCGCGGGACGCGTACGTGGGCGGCATGCTGGCCGTGGCC
CGGAAGGCGTCGGCCACGGCGCTGCCCGGCGGCGGGCCCGAGGGGATCTGGGCCAGGCGCGTGCCGCGGCGGAAGCAGCT
GCCCTCGGCGACGGCGGCGCGGACGTCCGAGTTCGAGCAGCGGCTGGTCATGGAGATCTACAAGTCCATCGTCGCGTCCA
AGGAGCTCACCACCATGCTCCACTCCTCCACCGCGCACCTGCAGCCGCCGCCCGCGCGCGCCTAGCTG--CCTAGGCTGT
TGC-----------------------------------------------------------------------------
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>chr1D_484
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------------------------------------------------------------------------TTGAGCGG
CAT-GGGACAACGGTTCGACTGGTGGCTGCGCGGGAGAGGG-----G-----GGCTGGAGGAAGAGGAAGAC-AAGGGAA
AATGTGATTGAAATAAATAAAAAAAGT-TAGGCGACTGAGAAATAGTTGCCGCCAAGCAAGCTC-CACCGGTCA------
--------------------------------------------------------------------------------
---------------------------------------GCGGTCAAATCAACACACACA----AGTGCATAAAAATGTG
AAGCAACGGAATCTTCAACCAACCAGTTTAG---TCATCCATCCAGGCTGCCACCGGTTCCGGCCGCCTTCTAGAC----
-GTTGAACACATGGTAACATGCTGCATTTACCAGTGATATTATGCTGGCCACCACGCCATGCACGTACGCATG----ATC
GAGGCGAATCAATGAA-CGAAAGAAAGAAAACGACCTTG----GG----CTATCCACACCAGCGCA-----CGCACCACC
AAGTCACCAACCACGGCGTCGACGAGTGAATTCAACGTGGCCACTGCCGCAT---GCGAAAACGGCATCAAATCCCCATG
ATTTTGTCACCGGTCACCACCAGTCG--------CACACACAACCCCCACCAACCACGGCCGTAGCCCCCCGCCCCTGCA
T---AAAAGACGCGAGCCGGCATCGCACTTTGCTCCATCCACCACCAAACTCCCATTTCACCCAGCACCTACGCAAGCTA
AACACAAGCAAAGCTGCACCAAACTCGATCGATTCTCCGGTCAAGCAG-CACGCCAGCCAGAGCGCGCCGCACCCCCACC
TCGCCGCCGAGCAAACACGCAACGCACGAGCCGGCCCGGCCATGGAGGTGGAGGCGTTCCCGATCGGGTTCACCAAGGGC
GTGCGCGCGCACTGGCGCCGGCGCAAGTACCAGCGCCTGGAGGCCGGCGAGGGCGGCGGCAGCAGGTCCCAGGGCACGCA
GCGCCTCGGCGGCTCCGGCGCGCGGCGCGTCGGGTGGCGCGTGCGGCTGCGCGGGCTTCTCATCCGGCGCGCGCGCGCCG
TCCGCGCGATCGTAACGGCGCCGAGGAGGCTGCTGGCGCGGGCGCGGGACGCGTACGTGGGCGGCATGCTGGCCGTGGCC
CGGAAGGCGTCGGCCACGGCGCTGCCCGGCGGCGGGCCCGAGGGGATCTGGGCCAGGCGCGTGCCGCGGCGGAAGCAGCT
GCCCTCGGCGACGGCGGCGCGGACGTCCGAGTTCGAGCAGCGGCTGGTGATGGAGATCTACAAGTCCATCGTCGCGTCCA
AGGAGCTCACCACCATGCTCCACTCCTCCACCGCGCACCTGCAGGCGCCGCCCGCGCGCGCCTAGCTG--CCCAGGCGGT
CGCAACCGGCATCCGTACGAAGGCTGGGATTTTTCC----TGCAGCCGTCGACCAGCACAGGTGCATGTACCACATCATG
TTGATCGATCGATCGATCGATGTGAAGCGAGGTTTCTCAAGATGACCGTCTGCTCTCTCTCTCTCTCTCTCTCTC-----
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---------------------------------------------------TCTCTCTCTCTCTCTCTCTCAGCAGGTGC
TGCTACGAAGCAGTGGCACTGCTCATGAATTGCACTGTAGTAACTTGTTGTAAGAATTGTAGAAATCAATCCTGATTAAG
CTGTTCAAACAATTTGGTATGCTTAGTGTCATTGTCAAGGCAAACTTCTCCATGGCTGCGTTCATAACTATCTGTGTGAA
AAGTCGAATGGTCCAACTACAGTCTACAAGATAACAGGATGGTGTGTCTTCTGACTGGAAAAGCTCGGTATTCTTCCCGT
GTGTTTGACAAAAACGTGAAAATGAACAAAACTGACCCTTATCTGAAACTTCAACACAAAATGACTCCAATCTGAAAATA
TTTTACGAAATGGCCCTCTTTTGCATGACGCCCGCGGCTAGGGCGCCATGCTGAAGAGCATGACGCCCCGGGCTAAGGCG
CCGTGGTAGCGACATGTAGCATGACGCCCCGGAGTAGGGCGCCATGCCAAATAGCATGACGCCCTAAGCCGGAGCGTCAT
GCTATCTAGCATGGCACCCTAGCCCCGGGCGTCATGCAGAAGGGGCCATTTCATGAAATATTTTTAGATTGAGGTCATTT
TGGGTTGAAGTTTCAGATAGGGCCATTTTTGTCCATTTTGACGACAAAAACAGAGCATGCATGGTAGTAAAACAGAGTAT
TCATGGATGGAACTGCGGTTTACACGTGGTCCCTTCCATGTCAGCGTAAGCATGTGGATGCATACTGTTCATCTAGAAAC
TTTAAATAAGGCAGGGCTCAACTGAGTGTGACTTCAAAGCAGCTTCTTGGTACTACTGTATTTCACGTGCTGTTCATCTA
GAAGCTTTAGCATAAGAGCATCTACAGCAGGCCGCCCCAAATCCTTCTCAAATGCCCGGACGCCCGCCCGATCATTGGCC
GGTCATGATTTTTTTGTCCGGACGGACTTCTCAAACAGGCCTCAAACGACC-----------------------------
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>chr1B_484
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------------------------------------------------------------------------TTGAGCGG
CATGGGGACAACCGTTCGACTGGTGGCTGCACGGGAGAGGG-----GTGACGGGCAGGAGGAAGGCGAAGACCAAGGGAT
AAAATGTTTGAACCAG--AAACAAAAAATAGTCGATTGAGAAATAGTTGCCCCCAAGCAAACTTACACTGGTCA------
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---------------------------------------GCAGTCAAGTAAACACACACA----GGCGCATTAAAATGTG
AAGCAACGGAATCTTCAGCCAACAAGTTTAATAATCATCCATCCAGGCTGCCACCGCTTCCGGCCGCCTTCTAGACGTCC
-----AACACATGGTAACATGCTGCATTTACTAGTGATATGCTG-----------GCCATGCACGTACGCATG----ATC
GAGGCGACTGAATGAAATGAAAGAAAGAAAACGACCTGGGGCTGG----CTATCCACACCACGGGC-----AGCACCACC
AAGTCACCAACCACGGCGTCCACGAGTGAATTCAACGTGGCCACTGCCGCGTGCCGCGAAAACGGCATCAAATCCCCATG
ATTTTGTCACCGGTCACCACCTGTCGCACACCCACACACACAACCCCCACCAACCACGGCCGTAGCTCCCCGTCCCTGCA
T---AAAAGACACGCGCCGGCATCGCACTTTGCTCCATCCACCACCAAACCCTCATTTCACCGAGCACCTACGCAAGCTA
AACACGAGCAAAGCTGCACAAAACTCGAC----TCCCCGGTCAAGCAGCCACGCCAGCCAGAGCGCGCCGCACCCCCACC
TCGCCGCCGAGCA----CTTAGCACACGAGTC-GGCCGGCCATGGAGGTGGAGACGTTCCCGATCGGGTTCACCAAGGGC
GTGCGCGCCCACTGGCGCCGCCGCAAGTACCAGCGCCTGGAGGCCGGCGAGGGCGGCGGCAGCAGGTCCCAGGGCACGCA
GCGCCTCGG------CGGCGCGCGGCGCGTCGGGTGGCGCGTGCGGCTGCGGGGGCTGCTCCTCAGGCGCGCGCGTGCCG
TCCGCGCGATCGTGACGGCGCCGAGGAGGCTGCTGGCGCGCGCGCGGGACGCGTACGTGGGCGGCATGCTGGCGGTGGCC
CGGAAGGCGTCGGCCACGGCGCTGCCCGGCGGCGGGCCCGAGGGGATCTGGGCCAGGCGCGTGCCGCGGCGGAAGCAGCT
GCCCTCGGCGAAGGCGGCGCGGGCGTCCGAGTTCGAGCAGCGGCTGGTGATGGAGATCTACAAGTCCATCGTGGCGTCCA
AGGAGCTCACCACCATGCTCCACTCCTCCACCGCGCACCTGCAGCCGCCGCCCTCGCGCGCCTAGCTTTCCCAAGGCGGT
CGCTACTGGCAACCGGATGGAAGCTGGGATTTTTTTCTCTTGCAGCCGTCGGCCAGCACAGCTGCATGTACCACATCATG
TT----GATCGATGGATGGATGTGAAGCGAGGTTTTTCAAGATGATCGTCTCCTCTCT----------------------
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----------------------------------------------------------CTCTCTCTCTCTCGGCAGGTGC
TGCTACGAAGCGGTGGCACTGCGCATGAGTTGCACTGTAGTAACTTGTTGTAAGAATTGTAGAAACCAATCTTGATTAAG
CTGTTCAAACAATTTGGTATGCTTGGTGTCGTTGTCAAGGCAAACTTTTCCATGGCTGCGTTCATAACAATCT-------
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>chr4A_2713
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------------------------------------------CAATCGCCATGTAATTGCTTTACTTTATGACTAAGCGG
TAGCGATAGTCGTAG----AATAGTTGGCAAGATGACAACGATGCTACGATGGAGATCATGATGGTGCTTTGGAGATGGA
GATCAAAGGCACAAGATGATGATGGCCATATCATGTCACATATTTTGATTGCATGTGATGTTTATCCTTTATGCATCTTA
TTTTGCTTAGTGCGGCGGTAGCATTCTAAGATGATCCCTCACTAAA-TTTCAAGGTACAAGTGTTCTCCATGAGTATGCA
CCGTTGCTACAGTTCGTCGTGCCGAGACACCACGTGATGATCGGGTGTGATAAGCTCTACGTTCACATACAACGGGTGCA
AGCAAG-TTTTGCATGTGCAGAATACTCGGGTTAAACTTGACGAGCCTAGCATATGCAGATATGGCGTCGGAACACTAAG
ACCGAAAGGTAGAACATGAATCATATAGTAGATATGATCAACAAAGTGATGTTCACCATTGAAAACTACTCCATCTCACG
TGATGATCGGACATGGTTTAGTTGATATGGATCACATGATCATTTAGATGACTAGAGGTATGTCTATCTAAGTGGGAGTT
CTTAAGTAATATGATTAATTGAACTTT-AATTTATCATGAACTTAGTACCTAATAGT-ATTTGCATGTCTATGTTGTTGC
ATATCAATGGCCCGTGCTACCGTTCCCTTTAATTTTAA
>chr5A_2713
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------------------------------------------CAATCGCCATGTAATTGCTTTACGTTATCACTAAGCGG
TAGCGATAGTCGTAGAAGCAATAATTGGCGAGACGACAACAATACTACGATGGATATCATGACGTTGCTTTGGAGATGGA
GATCAAAGGCACAAGATGACGATGGCCATATCATGTCACATATTTTGATTGCATGTGATGTTTATCCTTTATGCATCTTA
TTTTGCTTAGTACGGCGGTAGCATTATAAGATGATCCCTCACTAAA-TTTCAAGGTATAAGTGTTCTCCCTGAGTATGCA
CCGTTGCTACAGTTCGTCGTGCCGAGACACCACGTGATGCTCGTGTGTGATAAGCTCTACGTTCACATACAACGGGTGCA
AGCCAG-TTTTGCACGTGCAGAATACTCGGGTTAAACTGGACGAGCCTAGCATAGGCATATATGGCCTCAGAACACTGAG
ACTGAAAGGTCGAACGTGAATCATATAGTAGATATGATCAACATAGTGATGTTCACCATTGAAAACTACTCCATCTCACG
TGATGATCGGACATGGTTTAGTTGATATGGATCACGTGATCATTTAGATGACTAGAGGAATGTCTATCTAAGTGGGAGTT
CTTAAGTAATATGATTAATTGAAGTTT-AATTTATCACGATCTAGGTAAATGATAGT-TTTTGCATATCTATGTTGTTGT
AGATCAATGGACCGTGCTACCGTTCCCTTGAATTTTAA
>chr3A_2713
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------------------------------------------CAATCACCATGTAATTGCTTTACTTTATCACTAAGCGG
TAGCGATAGTCATAGAGGCAATAGTTGGCGAGATGACAACGATGCTACGATGGTGATCATGACGGTGTTTTGGAGATGGA
GATCAAAGGCACAAGATGATGATGGCCATATCATATCACTTATATTGATTGCATGTGATGTTTATCCCTTATGCATCTTA
TTTTTCTTAGTTCGGTGGTAGCATTATAAGATGATCTCTCACTAAA-TTTCAAGGTATAAGTGTTCTCCCTGAGTATGCA
CCGTTGCTATAGTTCGTCGTGCCGAGACACCACGCGATGATCGGGTGTGATAAGCTCTACGTTCACATACAGCGGGTGCA
AGCCATTTTTTGCACGTGCAGAATACTCGGGTTAAACTTGACGAGCCTAGCATATGCAGATATGGCCTCGGAACACTGAG
ACCGAAAGGTCGAGCATGAATCATATAGTAGATATGATGAACATAGTGATGTTCACCATTGAAAACTTCTCCATCTCACG
TGATGATCGGACATGGTTTAGTTGATATGGATCACGTGATGATTTAGATGACTAGAGGGATGTCTATCTAAGTGAGAGTT
CTTAAGTAATATGATTAATTGAACTTT-AATTCATCATGAACTTAGTACCTGATAGTATTTTGCATGTCTATGTTGTTGT
AGATAAATGGCCCGTGCTACTGTTCCTTTGAATTTTAA
>chr1D_2719
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------------------------------------------------CCATGTAATTGCTTTACTTTATCACTAAGCGG
TAGCGATAGTCATGGAAGCAATGGTTGGTGAGACGACAACAATGCTACGATGGAGATCATGACGGTGCTTTGCAGATGGA
GATCAAAGGCACAAGATGATGATGGCCATATCATGTCACATATTTTGATTGCATGTGATGTTTTTCTTTTATGCATCTTA
TTTTGCTTAGTACGGCGGTAGCATTATAAGATGATCCCTCACTAAA-TTTCAAGGTATAAGTGTTTTCCCTGAGTATGCA
CCGTTGCTACAGTTCGTCGTGCCGAGACACCACGTGATGATCGGGTGTGATAAGCTCTACGTTCACATACAATGGGTGCA
AGCCAG-TTTTGCACACGTAGAATACTCGGGTTAAGCTTGACGAGCCTATCATATGCAGATATGGCCTCGGAACACTGAG
ACCGAAAGGTCGAACGTGAATCATATAGTAGATGCGATCAACATAGAGATGTTCACCATTGAAAACTACTCCATTTCACG
TGATGATAGAACATGGTTTAGTTGATATGGATCACGTGATCATTTAGATGACTAGAGGGATGTCTATCTAAGTAGAAGTT
CTTAAGTAATATGATTAATTGAACTTT-AATTTATCATGAACTTAGTACCTGATAGTATTTTGCATGTCTATGTTGTTGT
AGGTTAATGTCCCGTGCTACTGTTCCCTTGAATTTTAA
>chr7A_2719
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------------------------------------------------CCATGTAATTGCTTTACTTTATCACTAAGCGG
TAGCGATAGTCCTGGAAGCAATAGTTGGCGACACGACAACGATGCTACAATGGAGATCATGACGGTGCTTTGGACATGGA
GATCAAAGGCACACGATGATGATGGCCATATCATGTCACATATTTTGATTGCATGTGATGTTTATCCTTTATGCATCTTA
TTTTGCTCAGTACGGCGGTAGCATTATAAGATGATCCCTCACTAAA-TTTCAAGGTATAAGTGTTCTCCCTGAGTATGCA
CGATTGCTACAGTTCGTCGTGCCGAGACACCACGTGATGATCGGGTGTGATAAGCTCTACGTTCACATACAATGGGTGCA
AGCCAG-TTTTGCACATGCAGAATACTCGGTTTAAACTTGACGAGCCTGGCATATGCAGATATGGCCTCGGAACACTGAG
ACCAAAAGGTCGAACGTGAATCATATAGTAGATATGATCAACATAGAGATGTTCACCATCGAAAACTACTCCATCTCACA
TGATGATCGGACATGGTTTAGTTGATATGGATCACGTGATCATTTAGATGACTAGAGGGATGTCTATCTAAGTGGGAGTT
CTTAAGTAATATGATTAATTGAACTTT-AATTTATCATGAACTTAGTACCTGATAGT-TTTTGCATGTCTATGTTGTTGT
AGATCAATGGCCCGTGCTACCGTTCCCTTGAATTTTAA
>chr3D_2719
--------------------------------------------------------------------------------
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------------------------------------------------CCATGCAATTGCTTTACTTTATCACTAAGCGG
TAGCGATAGTCGTGGAAGCAATAGTTGGCGAGACGGCAACGACGCTACGATGGAGATCATGACGGTGCTTGGGAGATGGA
GATCAAAGGCACAAGATGATGATGGCCATATCATGTCACATATTTTGATTGCATGTGATGTTTATCTTTTATGCATCTTA
TTTTGCTTAGTACGGCGGTAGCATTATAAGATGATCCCTCACTAAAATTTCAAGGTATAAGTGTTCTCCCTGAGTATGCA
CCGTTGCGACAATTCGTCGTGCCGAGACACCACATGATGATCGGGTGTGATAAGCTCTACGTTCACATACAACGGGTGCA
AGACAG-TTTTGCACGTGCAGAATACTCGGGTTAAACTTGACGAGCCTAGCATATACAGATATGGCCTCGGAACACTGAG
ACCGAAAGGTCGAACGTGAATCATATAGTAGGTATGATCAACATAGTGATGTTCACCATTGAAAACTACTCCATCTCACG
TGATGACCGGACATGGTTTTGTTGATATGGATCACGTGATCATTTAGATGACTAGAGGGATGTCTATCTAAGTGGGAGTT
CTTAATTAATATGATTAATTGAACTTT-AATTTATTATGAACTTAGTACCTGATAGT-TTTTGAATATCGATGTTGTTGT
AGATCAATGGCCCGTGGTACCTTTCCCTTGAATTTTA-
>chr2B_2719
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------------------------------------------------CCATGTAATTGCTTTACTTTATCACTAAGCGG
TAGCGATAGTCGTAGTAGCAATAGTTGGCGAGACGACAATGATGCTACAATGGAGATCATGATGGTGCTTTGGAGATGGA
GATCAAAGGCACAAGATGATGATGGCCATATCATGTCACATATTTTGATTGCATGTGACGTTTATCTTTTATGCATCTTA
TTTTGCTTAGTACGGCGGTAGCATTATAAGATGATCCCTCACTAAA-TTTCAAGGTATTAGTGTTCTCCCTGAGTATGCA
CTGTTGCTACAGTTCGTTGTGCCGAGACACCACGTGATGATCGGGTGTGATAAGCTCTATGTTCACATACAACGGGTGCA
AGCTAG-TTTTGCACGTGCAGAATACTCGGGTTAAACTTGATGAGCCTAGCATATGCAGATATGGCCTCGGAACACTGAG
ACCGAAAGGTCGAACGTGAATCATATAGTAGATATGATCAACATAGAAATGTTCACCATTGAAAACTACTTCATCTCATG
TGATGATCGGACATGGTTTAGTTGATATGGATCACGTGATCATTTAGATGACTAGAGGGATGTCTATCTAAGTGGGAGTT
CTTTAGTAATATGATTAATTGAACTTT-AATTTATCATGAACTTAGT-CCTGATGTT-TTTGGCATATCTATATTGTTGT
AGATCAATGGCCCGTGCTACCGTTCCCTTGAATTTTAA
>chr2D_2719
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------------------------------------------------CCATGTAATTGCTTTACTTTATCACTAAGCAG
TAGCGATAGTCGTAGAAGCTATAGTTGGCAAGACGACAACAACGCTACGATGGAGATCATGACGGTGCTTTGGAGATGGA
GATCAAAGGCACAAGATGATGATGGCCATATCATGTCACATATTTTGATTGCATGTGATGTTTATCTTTTATGCATCTTA
TTTTGCTTAGTACGCCGGTATCATTATAAGATGATCCCTCGCTAAA-TTACAAGGTATAAGTTTTCTCCCTGAGTATGCA
CTGTTGCTACAATTCGTCGTGCCGAGACACCACGTGATGATCGGGTGTGATAAGCTCTACGTTCACATACAACGGGTGCA
AGCCAA-TTTTGCACGTGCAGAATACTCGGGTTAAACTTGACGAGCCTAGCATATGCAGATATGGTCTCGGAACAATGAG
ACCGAAATGTCGAACGTGAATCATATAGTAGATA-GATCAACATAGTGATGTTCACCAATGAAAACTACTCCATCTCACG
TGATGATCGGACATGGTTTAGTTGATTTGGATCACGTGATCATTTAGATGAATAGAGGGATGTCTATCTAAGTGGGAGTT
CTTAAGTAATATGATTAATTGAACTTT-AATTCATCATGAACTTAGTACCTGATAGT-TTTTGCATGTCTATGTTGTTGT
AGATCAATGGCCCATGCTACCGTTCCCTTGAATTTTAA
>chr5A_2719
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------------------------------------------------CCATGTAATTGCTTTATTTTATCACTAAGCGG
TAGCGATAGTCGTGGAAGCAATAGTTGGCGAGACGACAACGATGCTCCGATGGAGATCATGACGGTGCTTTGGAGATGGA
GATCAAAGGGAAAAGATGATGATGGACATATCATGTCACATATTTTGATTGCATGTGATGTTTATCCTTTATGCATCTTA
TTTTTCTTAGTACGACGGTAGCATTATAAGATGATCACTCACTAAA-TTTCAAGGTATAAGTGTTCTCCCTAAGTATGCA
CCGTTGCTACAGTTCGTCGTGCCGAGACACCACGTGATGATCGGGTGTGATAAGCTCTACGTTCACATATAACGGGTGCA
AGCCAG-TTTTGCACGTGCAGAATACTCAGGTTAAACTTGACGAGCCTAGCATATGCAGATATGGCCTCGGGACACTGAG
ACCGAAAGGTCGAACATGAATCATA--GTAGATATGATCAACATATTGATGTTCACCATTGAAAACTACTTCATCTCACG
TGATGATCGGACATGGTTTAGTTGATATGGATCACATGATCATTTAGATGACTAGAGGGATGTCTATCTAAGTGGGAGTT
CTTACGTAATATGATTAATTGAACTTTTAATTTATCATGAACTTAGTACATGATAGT-ATTTGCATGCCCATGTTGTTGT
AGATCAATGGCCCTTGCTACAGTTCCCTTGAATTTTAA
>SNPs
-------------------------SS-------------S------------S---------------------SSS--
----S---S----SSS-------------------------------------------S-------S------------
-S-S----------S-----S-------------S-------S--------------S---------S----------S-
------------------------------------SS-SSS------------S-----S---S-------------S-
-SS-S--------S--S-S--S-----S-------SS-------------------------------S-S-------S-
--S--S-S---S-----S-----S-----SS-S---S-SSSSSSS-S-SS--S-S----SS-SS----S-SS--------
S-SS--S-----------S------SSSSS--S---------SSSSS-------------------------------S-
-----------------------------------------S-----------------------------S--S-----
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S----S---------------------------------
--------------------S-----------------------------------------------------------
----------SSSSSS-S--------------S-----------------------------------------------
----------------------------------------------------------S----S--SSSSS---------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
-----S----------------------------S-------------------------------------------S-
S-S----------------------S-------S--------S----S--------------------------S-----
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
------------------------S------------------------------------------------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
---------------------------------------------------S------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------
-------------S-------S----S-----S--------------S-------------------S------------
--------------------------------------------------------------------------------
----------------------SS---------------S--S----S------------------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S--S-S------------S------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S----------------S---S--S--
-----S-------S----SS---S------------------------------------------------S-------
----S-------------------------------------------------------------------S-------
--------------S----------------S----S-------------------------------------------
---S------------------------------------------------------S---------------------
---------------S----------------------------------------S-----------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
---------------S-------S----------------S----------------S----------------------
----------------------------------------------------------------S---------------
-----------SS-------------------------
>forward_481
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-------------------------------------------------------------CAGGAGTGCAAACAACAGC
C-------------------------------------------------------------------------------
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--------------------------------------
>reverse_2763
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------------------------------------------CGTGTATGACTGGAAAAGCTCG----------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------
>forward_513
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------GACTCCGACACCTCAAACCC-----------------------------------------------
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--------------------------------------
>reverse_2768
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-----------------------------------------------ATGACTGGAAAAGCTCGGTAT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
>forward_978
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------GA
CGTTCAACACTGCTGCAT--------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------
>reverse_3431
--------------------------------------------------------------------------------
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----------------------------------------------------------------------GTCACTGACC
GGTCACGATT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
