>input_sequence_51957
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AT
GGACATGTGCATGGGCATGGCCAA---GCTGCTGCTGCTGCTGCTCCTCGTGGTCAC-----------------CGCCGG
CCACGGCCACGCGGCGG---CGGCGGCGGGGAAGGAGAGGAACACTATCACGCACGTCAAGGGGTTCGACGGCCCGCTGC
CCTTCGCCCTGGAGACCGGGTACGTGGAGGTGGACGAGGCGCACGGCGCCGAGCTCTTCTACTACTTCATCCAGTCGGAG
CGCAGCCCGCGGGAGGACCCGCTCATCCTCTGGATCACCGGCGGCCCCGGCTGCTCCGCGCTCTCCGGGCTCCTCTTCGA
GATCGGGCCCCTCAAGTTCGACGTGGCGGGGTACACCGAGGGCTTCCCGCGCCTCGTCTACTTCGAGGACTCGTGGACCC
GGGTCAGCAACGTCATCTTCCTCGACGCGCCCGTCGGCACCGGCTTCTCCTACGCGCGCGAGGAGGAGGGCCTCGACGTC
AGCCTCACCGGCACCGGCACGCACCTCCGGGTCTTCCTGCAGCGGTGGATCGCGGATCATCCTGAGTTCGCCTCCAACCC
GCTCTACATCGGCGGCGACTCCTACTCCGGGTACACCGTCCCCGTGGCCGCGCTCGAGATCGCCGACCAGCCGGATAAGG
GAGG------------------CCTGAACCTCAAGGGCTACCTGGTGGGCAACGCCGGCACCGACGACAAGTACGACTCC
GGCGGCAAGATCCCCTTCATGCACGGCATGGGGCTCATCTCCGACGAGCTCTACGAGGCGGCGAAGGGTAGCTGCGGCGG
GGACTTCGTGACGACGCCCCGGAACGCGCAGTGCGCCAACGCGCTGATGGCGATCACCATGGCCACCTTCGCCGTCAACC
CGGTGCACATCCTCGAGCCCATGTGCGGGCTGGCGCTGCGCCCTCCGAC---CCCGGTCAGCAGCATCCTCTCCACGGGC
ACGAGGAGACGGTCGGCGAGGCTGCTGGTGCAGGAGGCGG------ACCGGCTGGCGCTCCCGGTGGAGTGCCGGGACAA
CGGGTACCGGCTGTCGTACGCCTGGGCGGACGACGCGGAGGTGAGGGCGACGCTGGGCATCCGGGAGGGGTCGGTCGGCG
CGTGGAGCCGGTGCGTGACGCTGACGCATTTCCGGCACGACGTGGCCAGCACCGTGCCCTACCACACCAACCTGACGCGG
CGCGGCTACCGGGCGCTGGTGTACAACGGCGACCACGACATGGACATGACCTTCGTGGGCACGCAGGCGTGGATCCGGAC
GCTAGGGTACCCCGCGGTGGCGCCGTGGCGGCCGTGGTACGCCAACCGGCAGGTCGCGGGCTTCACGACGGAGTACGCCC
ACAACCTCACCTTCGCCACCGTCAAGGGCGGCGGCCACACCGCGCCCGAGTACCGCCCCAAGGAGTGCCTCGCCATGCTC
GACAGGTGGACCTCCGCCGACGGCAGGCTCTGA-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr5A_1_TraesCS5A01G307200
GCCCCAACTTCTCTCAGCTTCGCGAAAAGATGGCCCTTTCCAGATATTTAGGCGGGCAGAAAACGGCCTGAAAGTTTAGG
GTGCGAGCCTCGTCCCGATGCCGTGTCGCCGCCGCAACGCGACACCACTCGCCG-----AACCACCGCTGATACGCGCCG
CCCTGCACCACCACTCACCATCGTGCCTCCCCAAGCCGCGTCGTTGCTCGCCCCTGTCACTGACGCGGGCCCTAGGCCAT
TTGTATGCTTGTTTAAAGGAAAATA--GAAAAAATGACTTTAGAGAGCGGAACTGAGAAAAGTAGCTGTGAGACAACTTA
TCCTAAATTACACGGACATCCAGTAAAACGACATTTACGCGAAGGGTT--GGAGAGCTATTGGAGTTCTTCTAACCATCC
AATTATTACTATTTGGTTCTCTGTATCAAACTGTTTTCAGTCTGAACATAGGGCCAAAAATCCAAACGGTTTTTACACTC
TGCACTCTGCAGGTGAATAATACAAT-----------------------------AGATGAGCCGACACTCGCAAAAAAG
AAGATGACGAGTCGAGAGACTAAACTTAATTTCACCCGCAAAAAAAGAGAGAGAGAGAGACTAAACTTAATTAGAATATG
GCGGGGGAAGTGAAGTGTTTTTAAACGGTCAGGATCGCATCTTTGGAATCATACGGAGAAAATTGCGGGGCGTAGTATGC
TGTCGCGGTCGCGAGGTTACTTCTCATCACCGTTCGGGCAAGCGGACGTACTATGAATTGTCGATCGAGGTTGTTGATCG
GGCTCTCCGGAAACCAGCCAAGTAGCTTACGTGATCAGTGACCGCACCGCACCTCTCGTACATATGTCGTGTGCGCGCCG
TTCATCTCGATAAGACCCACTTAGGTCCTCACGCTCACGCCGGCAGATTTGTTACATCTGGACGGACGGCGTCGCCACTT
GCACTCGCACGCTGCAACATACTAGCTGCCTCCACTCCTCCGCACACTAGCGCCGCTGTCCAGCTGATTTGCTTCGAGAT
GGACATGTGCATGGGCATGGCCAA---GCTGCTGCTGCTGCTGCTCCTCGTGGTCAC-----------------CGCCGG
CCACGGCCACGCGGCGG---CGGCGGCGGGGAAGGAGAGGAACACTATCACGCACGTCAAGGGGTTCGACGGCCCGCTGC
CCTTCGCCCTGGAGACCGGGTACGTGGAGGTGGACGAGGCGCACGGCGCCGAGCTCTTCTACTACTTCATCCAGTCGGAG
CGCAGCCCGCGGGAGGACCCGCTCATCCTCTGGATCACCGGCGGCCCCGGCTGCTCCGCGCTCTCCGGGCTCCTCTTCGA
GATCGGGCCCCTCAAGTTCGACGTGGCGGGGTACACCGAGGGCTTCCCGCGCCTCGTCTACTTCGAGGACTCGTGGACCC
GGGTCAGCAACGTCATCTTCCTCGACGCGCCCGTCGGCACCGGCTTCTCCTACGCGCGCGAGGAGGAGGGCCTCGACGTC
AGCCTCACCGGCACCGGCACGCACCTCCGGGTCTTCCTGCAGCGGTGGATCGCGGATCATCCTGAGTTCGCCTCCAACCC
GCTCTACATCGGCGGCGACTCCTACTCCGGGTACACCGTCCCCGTGGCCGCGCTCGAGATCGCCGACCAGCCGGATAAGG
GAGG------------------CCTGAACCTCAAGGGCTACCTGGTGGGCAACGCCGGCACCGACGACAAGTACGACTCC
GGCGGCAAGATCCCCTTCATGCACGGCATGGGGCTCATCTCCGACGAGCTCTACGAGGCGGCGAAGGGTAGCTGCGGCGG
GGACTTCGTGACGACGCCCCGGAACGCGCAGTGCGCCAACGCGCTGATGGCGATCACCATGGCCACCTTCGCCGTCAACC
CGGTGCACATCCTCGAGCCCATGTGCGGGCTGGCGCTGCGCCCTCCGAC---CCCGGTCAGCAGCATCCTCTCCACGGGC
ACGAGGAGACGGTCGGCGAGGCTGCTGGTGCAGGAGGCGG------ACCGGCTGGCGCTCCCGGTGGAGTGCCGGGACAA
CGGGTACCGGCTGTCGTACGCCTGGGCGGACGACGCGGAGGTGAGGGCGACGCTGGGCATCCGGGAGGGGTCGGTCGGCG
CGTGGAGCCGGTGCGTGACGCTGACGCATTTCCGGCACGACGTGGCCAGCACCGTGCCCTACCACACCAACCTGACGCGG
CGCGGCTACCGGGCGCTGGTGTACAACGGCGACCACGACATGGACATGACCTTCGTGGGCACGCAGGCGTGGATCCGGAC
GCTAGGGTACCCCGCGGTGGCGCCGTGGCGGCCGTGGTACGCCAACCGGCAGGTCGCGGGCTTCACGACGGAGTACGCCC
ACAACCTCACCTTCGCCACCGTCAAGGGCGGCGGCCACACCGCGCCCGAGTACCGCCCCAAGGAGTGCCTCGCCATGCTC
GACAGGTGGACCTCCGCCGACGGCAGGCTCTGAGCCTCTGATCCGGCTCACCACTCCGTTGCCATCGCTCGGAGTACTAT
----ATACTGCCTACGAGTACAAATGAGTGTACCGTATGTATAATTCGATTTGGACCAGGGC--TAGCTGTTCACATCAT
TTCATGTACGGTGTCGTACTATTGATTGAAGTGCCATGCGCACCAGCGCACGAGAGGACGAAGACATAAATAAAAGTCAG
-AAAAACCTGGAGAGTTCCATGGAGTCTTTCCA--TGCATGGGG----TCGAGACCACGTACCTAGT------ACGTACG
TCTACATACAGTCAGTTAGCGAAAACAGACGAGCCATGAGACGAAAGAGTGAGCAACCCCATTCTCTTCTCGTACTTGCG
TTCCCGTGACCGGATGGGTATGAATGAAG--ATAAACCGGGATGACATAGCAGATTATGATGGTGTGCAACAGCGACGAA
GACGAAGGTGACTTCTTCTTCCCCTTGTTCTCCAACTTATTGGAATTGTTTGTTGGATTCAACTGAAGCGAGCAAAATTT
TCAGGATATGTCCACCATTGTTTGTACTAATGAAAAATGGTTCTATTGCATTAATGGCCCTAAGTTTTACGTGACACTTC
CCTCGCA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------AAAAAAAAGTTTTACNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTCCCTCCTTCCTTCCAACTGCCGTCAGCAAAAGCTCGTGC
GGTCGGGGGCCCTCGTCAGCGTCTGGTTTCTCCCGCGAACATGTGGGTAATAGGGTA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr5D_2
-CCCCAACTTTCCTCAGCTTTACAGGAAAATGGCCCTTCCCATGTATTTGGCT-GGCAGAAAACAGCCTGAAAGTTCTGG
GCGCGCGCCTCGTCTTGATGCCGGGTCGCCACCGCAACGCGATGCCACTCGTCGCGTCAAACCACTACCGACACACATGA
CCCTGCACCGCCACTCTCCGGCGTGCCTCCTCGAGCCGCGTCGCTGCTTGCCGCTGTCACCGACGCGGGCCCTAGGTCAT
TTGTATGCTTGTATAATGGAAAATAGGGAAAAAATGATTTTAGAGAAAGGAACTGAGGAAAGTAGGTGTGAGACAATTTA
CCCTAAATTATAGGGACATCCCGTAAGACGACTTTTACGGAAAGGGTTTCGGAGAGCTATTGGAGTTGCTCTAACCATCC
AATCACTA--------TTCTCTCTATCAAACTGTTTTCAGTTTGAACATAGGACCACAAATCCAAACGGTTTTTACACTC
TGCA-------GGTGAATAATAATAGATGAGTCCCGCAAAAAATAAAAAAAAACAAGATGAGTCGACACTCGCAAAAAAG
AAGAAGACGAATCGA-----------------------------------------GAGATTAAGCTTGATTAGAATCTG
GCGGGGGAAGTGAAGTGTTTTTAAACGGTCAGGATTGCATCTTTGGAACCGTACGGAGAAAATTGCGGGGCCTAGTATGC
TGTCGCGGTCGCGAGTTTACTTCTCATCATCGTTCGTGCAAGCGGACGTA---TGGATTGCCGATCGAGGTTGTTGATCG
GGCTCTCCGGAAACCGACCAAGTAGCTTACGTGATCAGTGACCGCACC-----TCTCGTACATACGTCGTGT--GCGCCG
TTCATCTCGATAAGGTCTACTTAGGTCCTCACGCTCACGCCGGCACATTTGTTACATCTGAACGGACGGCGTCGCCACTT
GCACTCGCACGCTGCAACATA---GCTGCCTCCACTCCTCCACACACTAGCGCCGCTGTCCAGCTGATTTGCTTCGAGAT
GGACATGTGCATGGGCATGGCCAAGCTGCTGCTGCTGCTGCTGCTCCTCGTGGTCAC-----------------CGCCGG
CCACGGCCACC---------CGGCGGCGGGGAAGGAGAGGAACACCATCACGCACGTCAAGGGGTTCGACGGCCCGCTGC
CCTTCGCCCTGGAGACCGGGTACGTGGAGGTGGACGAGGCGCGCGGCGCCGAGCTCTTCTACTACTTCATCCAGTCGGAG
CGCAGCCCGCGGGAGGACCCGCTCATCCTCTGGATCACCGGCGGCCCCGGCTGCTCCGCGCTCTCCGGGCTCCTCTTCGA
GATCGGGCCCCTCAAGTTCGACGTCGCCGGCTACACCGAGGGCTTCCCGCGCCTCGTCTACTTCGAGGACTCGTGGACCC
GGGTCAGCAACGTCATCTTCCTCGACGCGCCCGTGGGCACGGGATTCTCCTACGCGCGCGACGAGCGGGGCCTCGACGTC
AGCCTCACCGGCACCGGCACGCACCTCCGGGTCTTCCTGCAGCGCTGGATCGCCGATCATCCTGAGTTCGCCTCCAACCC
GCTCTACATCGGCGGCGACTCCTACTCCGGGTACACCGTCCCCGTCGCCGCGCTCGAGATCGCCGACCAGCCGGATAGCG
CAGG------------------CCTGAACCTCAAGGGGTACCTGGTGGGCAACGCCGGCACGGACGACAAGTACGACTCC
GGCGGCAAGGTCCCCTTCATGCACGGCATGGGGCTCATCTCCGACGAGCTCTACGAGGCGGCGAAGGGCAGCTGCGGCGG
GGACTTCGTGACGACGCCCCGGAACGCGCAGTGCGCCAACGCGCTCATGGCGATCACCATGGCCACCTTCGCCGTGAACC
CGGTGCACATCCTGGAGCCCATGTGCGGGCTGGCGCTGCGCCCTCCGAC---CCCGATCAGCAGCATCGTCTCCACAGGC
ACGGGGAGACGGTCGGCGAGGCTGCTGGTGCAGGAGGCGG------ACCGGCTGGCGCTCCCGGTGGAGTGCCGGGACAA
CGGGTACCGGCTGTCGTACGCCTGGGCCGACGACGCGGAGGTGAGGGCGACGCTGGGCATCCGGGAGGGGTCGGTCGGCG
CGTGGAGCCGGTGCGTGACGCTGACGCACTTCCGGCACGACGTGGCCAGCACCGTGCCGTACCACGCCAACCTGACGCGG
CGCGGCTACCGCGCGCTGGTGTACAACGGCGACCACGACATGGACATGACCTTCGTGGGCACGCAGGCGTGGATCCGGAC
GCTGGGGTACCCCGCGGTGGCGCCGTGGCGGCCGTGGTACGCCAACCGGCAGGTCGCCGGGTTCACGACGGAGTACGCCC
ACAACCTCACCTTCGCCACCGTCAAGGGCGGCGGCCACACCGCGCCCGAGTACCGCCCCAAGGAGTGCCTCGCCATGCTC
GACAGGTGGACCTCCGCCGACGGCAGGCTCTGAGCCTCTGACCTCGGCCGACGGAGTAC--------------------T
----ATACTGCATACGAGTACAAATGAGTAC------TGTATAATTCGATTTGGATCAGTGCTATAGCTGTTCACATCAT
TTCATGTACGGTGTCGTACTATTGATTGAAGTGCCATGCA--------CACGAGAGGACGAAGACATAAATAAAAATCAG
-AAAAACCTGGAGGGTTCCATTGAGTCTTTCCACGTGCATGGGG----TCGAGACCACCGAGCTAGCCATACCACGTACG
TCTGCATACAGTCAGTTAGCGAAAACAGACGAGCCATGGCACGAAAGAGTGAGCAACCCCATTCTCTTCTCGTACTTCCG
TTCCCGTGACCGAATGGGTACGAATGAAGCGATAAACTGGGATGACATGGTAGATTATGATGGTGTACAACAGCGACGAA
GGTGACTT---CTTCTTCTTCCCCTTGGTCTCCGATTACTCA-AATTGTTTGCTGAATTAAACCGAAACTTGCAAAATTT
TCAGGACATGAGACCACCGTTGTGTGGG----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CTAATGAAAAATGTTTCTATTGCGCGAATGGTCTTAA-TTTAACGTGACACTT
>chr5B_605
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GGGGGAAGTGAAGTGTTTTTAAACGGTCAGGATTGCATCTTTGGAACCGTACGGAGAAAATTGCGGGGTGTAGTATGC
TGTCGCGGTCGCGAGTTTACTTCTCATCATCGTTGCAATCGGACG------TATGAATTGTCGATCGAGGTTGATCGAT-
--CTCTCCGGAAACCGACCAAGTAGCTTACGTGATCAGTGACCGCACC-----TCTCGTACATATGCCGTGT--GCGCCG
TTCGTCTCGTTAAGAT---CTTAGGTCCTCACGCTCACGCCGGCAGATTTGTTACATCT----GGACGGCGTCGCCACTT
GCACTCCCACGCTGCAACATA---GCTGCCTCCACTCCTCCACACACTAGCGCCGCTGTCCAGCTGATTTGCTTCGAGAT
GGACATGTGCATGGGCATGGCCAAGCTGCTGCTGCTGCTGCTGCTCCTCGTGGTCAC-----------------CGCCAG
CCACGGCCACGCGGCGGCGGCGGCGGCGGGGAAGGAGAGGAACACGATCACGCACGTCAAGGGGTTCGACGGCCCGCTGC
CCTTCGCCCTGGAGACCGGGTACGTGGAGGTGGACGAGGCGCACGGCGCCGAGCTCTTCTACTACTTCATCCAGTCGGAG
CGCAGCCCGCGGGAGGACCCGCTCATCCTCTGGATCACCGGCGGCCCCGGCTGCTCCGCGCTCTCGGGCCTCCTCTTCGA
GATCGGGCCCCTCAAGTTCGACGTGGCGGGGTACACCGAGGGCTTCCCGCGCCTCGTCTACTTCGAGGACTCGTGGACCC
GGGTCAGCAACGTCATCTTCCTCGACGCGCCCGTGGGCACCGGCTTCTCCTATGCGCGCGACGAGGAGGGCCTCGACGTC
AGCCTCACCGGCACCGGCACGCACCTCCGGGTGTTCCTGCAGCGGTGGATCGCTGATCACCCTGAGTTCGCCTCCAACCC
ACTCTACATCGGCGGCGACTCCTACTCCGGGTACACCGTCCCGGTCGCCGCGCTCGAGATCGCCGACCAGCCGGATAAGG
GAGG------------------GCTGAACCTCAAGGGGTACCTGGTGGGCAACGCCGGCACCGACGACAAGTACGACTCC
GGCGGCAAGGTCCCCTTCATGCACGGCATGGGGCTCATCTCCGACGAGCTCTACGAGGCGGCGAAGGGCAGCTGCGGCGG
GGACTTCGTGACGACGCCCAGGAACGTGCAGTGCGCCAACGCGCTCATGGCGATCACCATGGCCACCTTCGCCGTCAACC
CGGTGCACATCCTCGAGCCCATGTGCGGCCTGGCGCTGCGCCCTCCGACGACCCCAATCAGCAGCATCCTCTCCACGGGC
ACGAGGAGAAGGTCGGCGAGGCTGCTGGTGCAGGAGGCGG------ACCGGCTGGCGCTCCCGGTGGAGTGCCGGGACAA
CGGGTACCGGCTGTCCTACACCTGGGCGGACGACGCGGAGGTGAGGGCGACGCTGGGCATCCGGGAGGGGTCGGTCGGCG
CGTGGAGCCGGTGCGTCACGCTGACGCACTTCCGGCACGACGTGTACAGCACCGTGCCCTACCACGCCAACCTGACGCGG
CGCGGCTACCGCGCGCTGGTGTACAACGGCGACCACGACCTGGACATGACCTTCGTGGGCACGCAGGCGTGGATCCGGAC
GCTGGGGTACCCCGCGGTGGCGCCGTGGCGGCCGTGGTACGCCAACCGGCAGGTCGCCGGGTTCACGACGGAGTACGCCC
ACAACCTCACCTTCGCCACCGTCAAGGGCGGCGGCCACACCGCGCCCGAGTACCGCCCCAAGGAGTGCCTCGCCATGCTC
GACAGGTGGACCTCCGCCGACGGCAGGCTCTGAGCCTGTGATCCGACTCGCCACTCCGTTGCCATCGGTCGGAGTACTAT
ATACATACTGCCTACGAGTACAAATGAGTGTACTGTATGTATATTTCGATTTGGAACAGGGC--TAGCTGTTCACATCAT
TGCATGTACGGTGTCGTACTATTGATTGAAGTGCCATGCA--------CACGAGAGGACGAAGACATAAATAAAAGTCAG
AAAAAACCTGGAGAGTTCCATGGAGTCTTTCCAAATGCATGGGGTAGCTCGAGACCACCGAGCTAGCCCTATCACGTAGT
ACGTCTGTACTTCTCGTCT----------------------------------------------------GTACTTCTG
TTCCCGTGACCGAATGGGTATGAATGAACCGATAAACTGGGATGACATTGCAGATTATGATGGTGTGCAACAGCGACGAA
GACGAAGGTGA---CTTCTTCCCATTGTTCTCCAACTTACTGGAATTGTTTGCTGGATTCAACTAAAACGAGCAAAATTT
TCAGGATATGTCCACCATTGTTTGTACTAATGAAAAATGGTTCTATTGCATGAATGGTCTTAGGTTTTACGTGACACTTG
ACCAAGATAATCCATTATCCACATTTAGATCCTTTCCAACACGAGCTCTTTTACTGTACCCCCTAATAGATATGGACCGT
CTATTATCAAAATCCAAGGGTGGTGATCCATCCATATTGCTCAACTGCGCGAGGACCATCGCCAGCAGTATCGGTACCAC
TGGCCGCTCCAGGTGCAGCAGTATACTTGCCATGAGGGTGATTTAGGAAGAAAAAAAAGTCAGCCCGCCTCATGACCGAG
CGAACTCGTTCTCTTCACTTGTTCTTCTCGGCTGTAAGCACGCGCCCGTCGGCTAGGATTCTAGCGGCCGCCTCGTCACT
TCCATATTGTTGACCATGCTCGTGGACCGATGCTGCTACGCCGCCGGCCATGATCGTCCACCGTCAGTGCACCTGCATCG
TCTTCCTTGACGAGGCCTTCTCTCCTCCCGGCTCCCCTTCCTCTCTGCCGGCGCCGCCGTTGCATCTCATCTTCTTCCGC
GTCCTTACTCAGCCATGACCGTGGATTGAGCGCGATTCCAATGAGCTCCTCTTCTTCGGCAGGGCCGCACGCAACTGTCA
GGCGCCATATAGCGAGGGACATTAGAGGTAGTATTTCAGAAGCCGCCAATCGATGGACTCTATCAATCAAACCAAAACAG
AACATTTCCGTCGAGAAGGTGACTTATACTGACTAGGACGTGGACATACAATGAGGATGATACGAGGCGCGGCTGGAGGT
TCTAGAACACCACGGCCAGGTCGACCAACGTCCGACGCTCTAGGTCAAGCACGCGGGCGGAGGCCAGTGGCGAGGGCGAG
CTGTGAAGCCAGGACGTAGTGGCGAGTTCGACCACGGCGGAGCCGACTACTCGTCGAGTGGGCGGCGGGGAACAGGGCGA
CATCACAACCAGGAAGAACACACTAATTTCTGATGGGTTAGCGTTATTCTGGAAAAAGGAAATCTGACGAGACTGCCCTC
GGGAAATCAACGGCGTAGATGATTGTATACTGCTCACTTTCATCTATAGCAGTATAGGGTACCATAAAAAAATTTCAGGA
TATGTCCACCATTGTTTGTACTAATGAAAAATGGTTCTATTGCATGAATGGTCTTAGGTTTTACGTGACACTT
>chr3A_1018
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------CATGGCCAGGCTGCTCCTCCTCCTCCTCCTCCTCGTGGTCGTCGACCTGGCCTTCGGCTCGCCGG
CGGCAGCGTAC---------GAGCGGCGGC--------GGAACGCCATCACGCACGTCAAAGGGTTCGATGGCCCTCTGC
CTTTCTACCTGGAGACGGGGTACGTGGAGGTGGACGACACGCACGGCACGGAGCTCTTTTACTACTTCATCCAGTCGGAG
CGCAGCCCGAGGGAGGACCCCCTCATCCTGTGGATCACCGGCGGCCCCGGCTGCTCCGCGCTCTCCGGCCTCTTCTTCGA
GATCGGCCCTCTCAAATTCGACGTGGCCGGCTACACCGAAGGGTTCCCAACCCTCGTCTACTTCGAGGACTCGTGGACCA
AGGTGAGCAACGTCATTTTCCTCGACGCGCCCGTCGGCACGGGCTTCTCCTACGCGCGGGAGGAGCAGGGCCTCAACGTC
AGCCTCACCGGCACCGGCGCGCAGCTCTGGGTATTCCTCGAGAAGTGGATCGCCGACCACCCCGAGTTCGCCTCCAACCC
GCTCTACATCGGCGGCGACTCCTACTCCGGCTACCTCGTGCCGGTCACCGCGCTCGAGATCGCCAACCATAATGATGCCG
GCCACGCAAGCGGAGGACCCAAGCTGAACCTGCAGGGCTACCTGGTGGGCAACCCTGGCACGGACGACAGGTACGACACC
CCGGGCAAGGTGCCTTTCATGCACGGCATGGGGCTCATCTCCGACGAGCTCTACGAGGCGGCGCAGGTCAGCTGCAGCCG
GGACGACTTCGTCACGCCGAGCAACGCGCGGTGCGCCAACGCTCTCGACGCCATCAACCTGGTCACCACCGACATCAACC
CCGTGCACATCCTGGAGCCCTTTTGCGGCCTCGCGCTGCGAGA---------CCCCGGCGGCGCCACCGTCTTCACGAAG
A------------CGGCAAGGCTGCTGCTCCAGGACAACCTGCAGCACAGGCTGGCCCTCCCCGTGGAGTGCCGGGACAA
CGGGTACCGGCTGTCGTACATCTGGTCGGACGACGCGGAGGTGAGGGAGACGCTGGGCATCCGCGACGGCTCCATCGGCG
CGTGGAGCCGGTGCACCACGCTGTCGCATTTCCGGCACGACGTGCGAAGCACAGTACCGTACCACGTCAACTTGACGCGC
CGGGGCTACCGAGCGCTGGTGTACAACGGTGACCACGACCTGGACTTCACCTTCGTGGGCACGCAGGCATGGATCAGGAC
GATGGGCTACCCCGTGGTGGCGCCCTGGAGGCCGTGGTACTCCAAGCAGCAGGTCGCGGGGTTCACGACGGAGTACGCCC
ACAACCTCACCTACGCCACCGTCAAGGGCGCCGGGCACACCGCGCCGGAGTACCGCCCCAAGGAGTGCCTTGACATGCTT
GACAGATGGACCTCGCCAGCCGGCAAGCTCTGA-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr3D_1018
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------CATGGCCAGGCTGCTCCTCCTCCTCCTC------GTGGTCGTCGACCTGGCCTTCAGCTCGCCGG
CGGCAGCGTAC---------GAGCGGCGGC--------GGAACGCCATCACGCACGTCAAAGGGTTCGACGGCCCTCTGC
CTTTCTACCTGGAGACGGGGTACGTGGAGGTGGACGACACGCACGGCACGGACCTCTTCTACTACTTCATCCAGTCGGAG
CGCAGCCCGAAGGAGGACCCCCTCATCCTGTGGATCACCGGCGGCCCCGGCTGCTCCGCGCTCTCCGGCCTCTTCTTCGA
GATCGGCCCTCTCAAGTTCGACGTGGCCGGCTACACCGAGGGGTTCCCGACCCTGGTCTACTTCGAGGACTCGTGGACCA
AGGTGAGCAACGTCATATTCCTCGACGCGCCCGTCGGCACGGGCTTCTCCTTCGCGCGGGAGGAGCAGGGCCTCAACGTC
AGCCTCACCGGCACCGGCGCGCAGCTCCGGATATTCCTTGAGAAGTGGATCGCCGACCACCCCGAGTTTGCCTCCAACCC
GCTCTACATCGGCGGCGACTCCTACTCCGGCTACACCGTCCCGGTCGCCGCGCTCGAGATCGCCAATCATAATGATGCCG
GCCACGCAAGCGGAGGCCCCAAGCTCAACCTGCAGGGCTACCTGGTGGGCAACCCTGGCACGGACGACAGGTACGACACC
CCGGGCAAGGTGCCTTTCATGCACGGCATGGGGCTCATCTCCGACGAGCTCTACGAGGCGGCGCAGGTCAGCTGCAGCCG
GGACGACTTCGTCACCCCGAGCAACGCGCGGTGCGCCAACGCTCTCGACGCCATCAGCGTGGTCACCACCGACATCAACC
CCGTGCACGTCCTGGAGCCCTTTTGCGGCCTCGCGCTGCGAGA---------CCCCGGCGGCGCCACCGTCTTCACGAAG
A------------CGGCAAGGCTGCTGCTCCAGGACAACCTGCAGCATAGGCTGGCCCTCCCTGTCGAGTGCCGGGACAA
CGGGTACCGGCTGTCGTACATCTGGTCGGACGACGCAGAGGTGAGGGAGACGCTGGGCATCCGCGACGGCTCCGTCGGCG
CGTGGAGCCGGTGCACCACGCTGGCGCACTTCCGGCACGACGTGCGAAGCGCAGTACCGTACCACATCAACCTGACGCGC
CGGGGCTACCGGGCGCTGGTGTACAACGGTGACCACGACCTGGACTTCACCTTCGTCGGCACGCAGGCATGGATCAGGAC
GATGGGCTACCCCGTGGTGGCGCCCTGGAGGCCGTGGTACTCCAAGCAGCAGGTCGCGGGGTTCACGACGGAGTACGCCT
ACAACCTCACCTACGCCACCGTCAAGGGCGCCGGGCACACCGCGCCGGAGTACCGCCCCAAGGAGTGCCTCGACATGCTT
GACAGATGGACCTCGCCCGCCGGCAAGCTCTGA-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>chr3B_1018
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------CATGGCCAGGCTGCTCCTCCTCCTCCTCCTC---GTGGTCGTCCTCCTGGCCTTCGGCTCGCCGG
CGGCAGCGTCC---------GAGCGGCGGC--------GGAACGCCATCACGCACGTCAAAGGTTTCGATGGCCCTCTGC
CTTTCTACCTGGAGACGGGGTACGTGGAGGTGGACGCCACGCACGGCACGGAGCTCTTCTACTACTTCATCCAGTCGCAG
CGCAGCCCGAAGGAGGACCCCCTCATCGTGTGGATCACCGGCGGCCCCGGCTGCTCCGCCCTCTCCGGCCTCTTCTTCGA
GATCGGCCCTCTCAAATTCGACGTGGCCACCTACACCGAGGGGTTCCCGACCCTGGTCTACTTCGAGGACTCCTGGACCA
AGGTGAGCAACGTCATATTCCTCGACGCGCCCGTCGGCACGGGCTTCTCCTACGCGCGGGAGGAGCAGGGCCTCAACGTC
AGCCTCACCGGCACCGGCGCGCAGCTCAGGATATTCCTCGAGAAGTGGATCGCCGACCACCCCGAGTTCACCTCCAACCC
GCTCTACATCGGCGGCGACTCCTACTCCGCCTACCTCGTGCCGGTCACCGCGCTCGAGATCGCCAATCATAATGATGCGG
GCCACGCAAGCGGAGGCCAGAAGCTCAACCTTCAGGGCTACCTGGTGGGCAACCCTGGCACGGACGACAGGTACGACACC
CCGGGCAAGGTGCCTTTCATGCACGGCATGGGGCTCATCTCCGACGAGCTCTACGAGGCGGCGCGGGTCAGCTGCAGCCG
GGACGACTTCGTCACGCCGAGCAACGCGCGGTGCGCCAACGCGCTCGACGCCATCAGCCTGGTCACCACCGACATCAACC
CCGTGCACGTCCTGGAGCCCTTTTGCGGCCTCGCGCTGCGAGA---------CCCCGGCGGCGCCACCGTCTTCACGAAG
A------------CGGCGAGGCTGCTGCTCCAGGACAACCTGGAGCACAGGCTGGCCCTCCCCGTGGAATGCCGGGACAA
CGGGTACCGGCTGTCGTACATCTGGTCGGACGACGCGGAGGTGAGGGAGACGCTGGGCATCCGCGACGGCTCCATCGGCG
CGTGGAGCCGGTGCACCACGCTGGCGCACTACCGGCACGACGTGCGAAGCGCAGTACCGTACCACGTCAACCTGACGCGC
CGGGGCTACCGGGCGCTGGTGTACAACGGTGACCACGACCTGGACTTCACCTTCGTGGGCACGCAGGCATGGATCAGGAC
GATGGGCTACCCCGTGGTGGCGCCATGGAGGCCGTGGTACTCCAAGCAGCAGGTCGCGGGGTTCACGACGGAGTACGCCT
ACAACCTCACCTACGCCACCGTCAAGGGCGCCGGGCACACCGCGCCGGAGTACCGCCCCAAGGAGTGCCTCGACATGCTT
GACAGATGGACCTCGCCCGCCGGCAAGCTCTGA-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>SNPs
S---------SS--------SS-SSS--S---------S---SS-----S-SSS----------S-----------SS--
-S---S--------SS-------S------S-----------SS-------S-------------SS-S--S--S-SSSS
---------S------S--SS---------S-S----------S----S---S-------S---------------S---
------------S---S--------------------S--------SS---------S-------S----------S---
S---------S-S--------S----S-----S------SS--------------------------SS-----------
---S-S--SSSSSSSS------S------------------S----------S---S-----------------------
----SSSSSSS-----------SS-S------------------------------------S-----------------
----S-----S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S---S---S--------S--
-----------------------------------S------------S-S-----------------------------
---------------S-------------S------S-------------S-----------------------------
---------------SS-------------------------------SSSSS-------------------SS------
---------------S-S------------------------------------------S-------------------
---------------------SSS-----------------S--------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
---------S----------------------------------------------------------S-----------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S--------------------------------------------------------S-------------------
--------------------------------------------------------------------------------
-------------------------------------------------S-----------------S------------
---------------------------------S---------------------S------------------------
---------------------------------------SSSSSSSSS--------------------------------
----------------------------------------------------------SS-S----S-------------
---S----------------------------------SS-------------------------------------S--
------------S------------------------S----------S-------------------------------
----------------------------------------------------S--------------S------------
---------------------------------------------------S-----S-S--S----------------S
S-SSSS--------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------SSSS-SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-SSSS----SSSSSSSS-S-S---SSSSSSS--SS
--SSSSSSSSSSSSSSSSS-S-SS-SSS-SSSSSSSS-SS-SSS-SSS-SSSSS-S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>forward_984
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TCGCACGCTGCAACATACTA--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
>reverse_2688
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------GCACGAGAGGACGAAGACAT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------
