>input_sequence_51942
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-TCCGTCGCAATTCGTTGGTGGCGTTTGTAGGGTG---------TTGATTGCTTTCTTTACCGTCGTCCTCCGGCGCCGT
ATCGATCTGCAGGGACGTGCCCCGGCGCGCAGCCCGCGGGGACGCCGGAGATGAGCTACAGCGGGAGCGGCGGAGGGAAG
CGCCTCCGCACGTCGCCGAGCGAGGCGGAGGGCAGCCCCAGGCGTCGTCGTGGGTCGCCGTCGGTCTACTCCCCTTCGCC
GTCGCCCTACCGGTCGCCCTCGCCGCTGCCGTCCCCGTCGACCTACCGGTCGCTCTCGCACTCGCCGTCGCCCTGCCGCT
CGTGGTCGCAGAGGCCGCCAAGCAACGACGATGCCGACGATCTGAGCCGCAGCCGCGGGTCGGACGACCTCGACCGGCAC
GGGCGGAGGCCTGCCTGGAGGCCGCACGCGAACAAGGAGCTGGGCGAGCACGGGCGCACCGGCGAGTACAGCGTCCGGAT
CGACGACTACGACCGCCTCTTCACCTGCAAGGCCTGCCGCCGCATGCTCTCGCCGCCGGTCTACCAGGTAACTTTCGGTT
GCAGCTGCAGCACAGTTCTATTTATTTATCATTACGTTCAGAATCAACTCAGCCGTGTTCTTGATACATGGTGTGCGTGC
AGTGCCCCTTCGCCCACGTCACCTGCTCGAGGTGCCACGAGGAAGTCGGGGACAACCGATGCAGCTGCTGCGGCAGCGGC
AATGGCTATGGGCGCAACCGCGTCGTCGAGGAGTTCCTAGGCCGCATCCGCTTCTCCTGCCGCAACAAAGTGCATGCCTG
TGAGGCCTTCCTTCCGCACCACGAGATGCGCCAGCATGAGCAGACCTGCCGCCACGAGCCTATCTTCTGCCCTGTCCCCC
AATGCGGCTTCGCCAGCCGGGCTGTTGCACTCACGACCCACCTCACCCTCCGCCACCACTGGGACACGATCAGGTTTCAC
TATGATGAGAACTTCCGGGCCTCTGCCTTCACGTCGACCATCTTTCAGAGCCGCGACGACGGCGAGCTGTTCTTCCTCGA
CAGCTTCAGCGAGGGCCGTGGCATTGCTCTGTCCACGATCTGCATCCGCCCTGAGAATGCCCGTGAGCAGGAGTTTGTGT
ATGAGCTGAAGACGCCGGTAGGCAACGGCGGCAGACGGCCCTGGCTGCAGATGCAGTCGACGGCGCGGAACACGTCGCTG
CGGCACGGGCTGGGGGAGAAGGAGAAGGTCTTCCTGCTGGTCCCCAAGGACTTGCCGGGCACCGAGGATGGCAACGTGGA
GGTGTGCATCCGTAAGCTTGGCCACCAGCGTGACTCTGTATAGGTTAGGCGACCTTGGTTGATGGCGATAC-TCGCTGAA
TTTTATAGGATTACTGCTAGTTGATTCCGGTTCATTGCTGAATGTTGATGTTGAGGTAGTCTGAATTTCATATTGG----
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>chr2D_1_TraesCS2D01G600200
TAAAAAAGTCCACCGTCTTT-ATAAAAAATGTCATCTCTTATAATAAAAAATGCCATAACATGGTTAATAAAAAAAATAC
CATGCACTTAGTGATAAAAACTGCCATGCCACTAATATTGAAAAAGATGCCATCCTCTTAAAAA--TGCCATGCTGCAAA
AAACAAAACTGCTATGGGATTTTCGGGACCGAAAATATAAGTGGCAGTTAAAACCA----TAAAAGGGCCTCGCACACTG
GAGGTCGTGGGTTCGACCCCCGACCCCGCCTCGTGATTTTTTGGAAGAAAAAACACAG--ACCCGTTCGCCATAAAGCAG
TCGCGCAACGAACTATCCCAATGATCCTATG------------TGGCGTCGGTTCTGCTCCAAGATTCGTGCGACGGCAA
GGAGGGCGTTCGCTGCGAAATCCCCT-TGGGTGACGGTCGCCGGTTAGCATTTCCGACTATTTATGGATGGCCAACATGT
TTGGCAGTTGAACTTCCCGGTGGATGTAATACGTGCTGTGACCACCAATTTGGTTGGTCCATCGTAATTTGGATTGCAAG
GTGTTCCAGCTCAAAAAAAGAAAAAAGACACAACAACTGTTTTTCATTAC-GAAGGCAAGAGCGG--AAAAAGGGGCATT
GTTCGAGTA--GTCTGGGCTAAACGGGCCACGCAGGAAGTGTTGTACTCGGAGTCTCGGACTGGGCCGCCTCCGGCACCG
ACTAGGCAGC----ACAAAAATAAAGAGCAGGAGCCCCTCAAAAATAAAAAATAAATAAAGAGCAGGGCAGAAACCCCC-
ACCGCTCGCCCGTTCCGTTCCGATCCCCTCTCCTCTCGTCCCCCGACTCCGCGCCGCCGGCGAGGGTTTGGCTCGCGCCG
TCCGCCCCCACGGCCGCCGCC---------GCCCCTCCTCTCCCCGAGCCGCGCCTGCCCTCGGCGACGGGCGGGCGAGA
GCCGAGCCCCCTGCCGCCGCCAGATCCGTCGTCTTCGAGCTCAGGTAAGAAGGCTCCGTCCAATCCCCATCCCTCGAATA
CTCCGTCGCAATTCGTTGGTGGCGTTTGTAGGGTG---------TTGATTGCTTTCTTTACCGTCGTCCTCCGGCGCCGT
ATCGATCTGCAGGGACGTGCCCCGGCGCGCAGCCCGCGGGGACGCCGGAGATGAGCTACAGCGGGAGCGGCGGAGGGAAG
CGCCTCCGCACGTCGCCGAGCGAGGCGGAGGGCAGCCCCAGGCGTCGTCGTGGGTCGCCGTCGGTCTACTCCCCTTCGCC
GTCGCCCTACCGGTCGCCCTCGCCGCTGCCGTCCCCGTCGACCTACCGGTCGCTCTCGCACTCGCCGTCGCCCTGCCGCT
CGTGGTCGCAGAGGCCGCCAAGCAACGACGATGCCGACGATCTGAGCCGCAGCCGCGGGTCGGACGACCTCGACCGGCAC
GGGCGGAGGCCTGCCTGGAGGCCGCACGCGAACAAGGAGCTGGGCGAGCACGGGCGCACCGGCGAGTACAGCGTCCGGAT
CGACGACTACGACCGCCTCTTCACCTGCAAGGCCTGCCGCCGCATGCTCTCGCCGCCGGTCTACCAGGTAACTTTCGGTT
GCAGCTGCAGCACAGTTCTATTTATTTATCATTACGTTCAGAATCAACTCAGCCGTGTTCTTGATACATGGTGTGCGTGC
AGTGCCCCTTCGCCCACGTCACCTGCTCGAGGTGCCACGAGGAAGTCGGGGACAACCGATGCAGCTGCTGCGGCAGCGGC
AATGGCTATGGGCGCAACCGCGTCGTCGAGGAGTTCCTAGGCCGCATCCGCTTCTCCTGCCGCAACAAAGTGCATGCCTG
TGAGGCCTTCCTTCCGCACCACGAGATGCGCCAGCATGAGCAGACCTGCCGCCACGAGCCTATCTTCTGCCCTGTCCCCC
AATGCGGCTTCGCCAGCCGGGCTGTTGCACTCACGACCCACCTCACCCTCCGCCACCACTGGGACACGATCAGGTTTCAC
TATGATGAGAACTTCCGGGCCTCTGCCTTCACGTCGACCATCTTTCAGAGCCGCGACGACGGCGAGCTGTTCTTCCTCGA
CAGCTTCAGCGAGGGCCGTGGCATTGCTCTGTCCACGATCTGCATCCGCCCTGAGAATGCCCGTGAGCAGGAGTTTGTGT
ATGAGCTGAAGACGCCGGTAGGCAACGGCGGCAGACGGCCCTGGCTGCAGATGCAGTCGACGGCGCGGAACACGTCGCTG
CGGCACGGGCTGGGGGAGAAGGAGAAGGTCTTCCTGCTGGTCCCCAAGGACTTGCCGGGCACCGAGGATGGCAACGTGGA
GGTGTGCATCCGTAAGCTTGGCCACCAGCGTGACTCTGTATAGGTTAGGCGACCTTGGTTGATGGCGATAC-TCGCTGAA
TTTTATAGGATTACTGCTAGTTGATTCCGGTTCATTGCTGAATGTTGATGTTGAGGTAGTCTGAATTTCATATTGGTGAA
TGCTTGGTCTGTTGTGGATTTTTCGGATGGTTGAGATGGGGAATGTAAGCACCACATGTTGCTGTGTGAACTTCCAGCTA
TATGTAGATACTCGTAGGCC--TTTATCTGAGGACGGAACTTTTATTTATTTATGATGGTCTCGCACATGTCATCTCATG
AATTCGTCAGGTAACACATATCTGAGTTTCACACTGATTGTTTATCCTGAAGTCCCAATGCTTATACCAGATGTTTCTCT
ATGTTCAGTGGGTTTGCCATTTTCCTCTTGCTTTCTCTGGATGTCAGTATGAATTGCTGCTGCATATCAAGAGCAA----
TTTGCGTGAGTAGTGAAGAAACAGCGACACTG--------CAAACTAACCAGGGATTGGTAGCTGCAGTTTGTTCACCTG
TGCTGATATTACTAACTCTTTTGCGTATAT-AAGAGTTTGCTTCCATCTTATCAATATTTGCGATTGAGTTTACACGTGC
AGTTTTGGTTGCTTGGTTTGTTTACTGTTAGCTTCACTATGTAACCCAGCTTTCCCGCATCTATTTTGTAGAGATGCA--
--AGCCATGTCTAAGTTTTGGCTTGTCGATGATTAATTGTCTTATGATTGGTGAGCTTATATGAGACAAAAATCATAGAT
GATTGCAATAAGATTGAAACATTAGCACAACAATGGAAGCTCATTGTTGCAG---CAAAGCTGCGCTCTTGCAAATGCAG
CAAAACCAGAAAAAAGGCCTTTGCAAGAAATATGTAACAATGCGACACAAGAAATTTGTGATTGCTACTGGATCCTTCGT
GGTCAT--ACCACTTAAAATATAAATATATAAATATAGAGGCAACAACAAATGATTGCCATGGGTCCCAACAGCGTCCAC
GTCTTCTAGCAACAAAACACATGTTTTAATTTTCT-AAGAAGAAAACACTTCCAACTTTC--------------------
---------------------------------------------------------------TATCTAGTTAGACTCTG
-------GCACAGTAGGTAACCGAACTTTTTTATTTTGCGGGAAAATCAACTTGTATAATTTGCTACACAA
>chrUn_1
TAAAAAATGCCATCTCTTGTAATAAAAAATGCCATCTCTTATAATAGAAAATGTCATAACATTAT---TAAAAAAAATAC
CATGCACGTAGTAATAAAAACTGCCATGCCATCGAAAT---AAAAAATGCCATCCTCTTAAAAAAATGCCATGCTGCAAA
AAACAAAACTACAATGGGATTTTCGGGACTGAAAACATATGTGGCAGTTAAAACCATATATAAAAGGGCCTCGCGCACTG
GAGGTCGTGAGTTCGACCCCACACCTCCCCTCGTAATTTTTTGGAAGAAAACACACACACACCCGTTCGCCAGAAAGCAG
CCGCGCAGGAAACTATCCCATCGATCCTACATGGCATCGGTTCTGGCGTCGGTTCGGCTCCAAGATTCGTGCGACGGCAG
GGAGGGTGTTCGCTGCGAAATCCCCCCTGGCTGACGGTCGCCGGTTAGCATTTCCGACTACTTATGGGTCTACTCTGACA
CAAGAATTTGTTTTTTTTTTGAGGGATCCCCTCTAG--------------------------------------------
----------------------------CACAACAATTGTTTTTCCCTGG-AAAGGCAAGAGCGGAAAAAAAGGGGCATT
GTTCGGGTATAGTCTGGGCCAAACGGGCCGCGCAGGAAGTGTTGTACTCGGAGTCTCGGACTGGGCCGCCTCCGGCACCG
ACTAGGCAGC----AGAA-----------------------------------AAATAAAGAGCAGGGCAGAAACCCCCC
ACCGCTCGCCCGTTCCG-----ATCCCCTCTCCTCTCGTCCCCCGACTCCGCGCCGCCGGCGAGGGTTTCGCTCGCGCCG
CCCGCCCCCACGGCCGCCGCCGCCGCCGCTGCCCCTCCTCTCCCCGAGCCGCGCCTGCCCTCGGCGACGGGCGGGCGAGA
GCCGAGCCCCCTGCCGCCGCCAGATCCGCCGTCCTCCAGCTCAGGTAAGACGGCCCCGCCCAATCCCCGGCCCTCGAATA
CTCCGCCGCAATTCGGTAGCGGGATTTGCAGGGTGTTGAGTTGATTGATTTCTTTCTTTACCGTCGTCCTCCGGCGCCGT
CGCGGCCTGCAGGGACGTGCCCCGGCGCGCAGCCCGCGGGGACGCCGGAGATGAGCTACAGCGGGAGCGGCGGCGGGAAG
CGCCTCCGCACGTCGCCGAGCGAGGCGGAGGGCAGCCCCAGGCGCCGCCGCGGGTCGCCGTCGGTCTACTCCCCGTCGCC
GTCGCCCTACCGGTCCCCCTCGCCGCTGCCGTCCCCGTCGACGTACCGGTCGCTCTCGCACTCGCCGTCGCCCTGCCGCT
CGTGGTCGCAGAGGCCGCCCAGTGATGATGATGCCGACGATCTGAGCCGCAGCCGCGGGTCGGACGACCTCGACCGGCAC
GGGCGGAGGCCTGCCTGGCGGCCGCACGCGAACAAGGAGCTGGGCGAGAATGGGCGCACCGGCGAGTTCAGCGTCCGGAT
CGACGACTACGACCGCCTCTTCACCTGCAAGGCCTGCCGCCGCATGCTCTCGCCGCCGGTCTACCAGGTGAGTTTCGATC
GCAGTTGTAGCACGGTTTTATTTAT----CATTACGGTCAGAATCAACTCAGCTGTGTTCTTGATACATGGCGTGCGTGC
AGTGCCCCTTCGCCCACGTCACCTGCTCGAGGTGCCACGAGGAAGTCGGCGACAACCGGTGCAGCTGCTGCGGCAGCGGC
AATGGCTATGGGCGCAACCGCGTCGTCGAGGAGTTCCTAGGCCGCATCCGCTTCTCCTGCCGCAACAAAGTGCATGCCTG
TGAGGCCTTCCTTCCGCACCACGAGATGCGCGAGCATGAGCAGACCTGCCGCCACGAGCCTATCTTCTGCCCTGTCCCCC
AATGCGGCTTCGCCAGCCGGGCTGTCGCACTCACGACCCACCTCATCCTCCGCCACCACTGGGACACGATCAGGTTCCAC
TATGACGAGAACTTCCGGGCCTCTGCCCTCACGTCGACCATCTTTCAGAGCCGCGACGACGGCGAGCTCTTCTTCCTTGA
CTGCTTCAGCGAGGGCCGTGGCATCGCTCTGTCCATGATCTGCATCCGCCCTGAGAACGCCCGTGAGCAGGAGTTTGTGT
ATGAGCTGAAGACGCCGGTAGGCAACGGCGACAGACGGCCCTGGCTGCAGATGCAGTCTACGGCACGGAACACGTCGCTG
CGTCACGGGCTGGGGGAGAAGGAGAAGGTCTTTCTGCTGGTCCCCAAGGACCTGCCGGGCACCGAGGATGGCAACGTGGA
GGTGTGCATCCGTAAGCTTGGCCACCAGCGCGACTCTGTATAGGTTAGGCGACCTTGGTTGATGGCAACACTT-GCTAAA
TTTTATAGGATTAC--------------AGTTCATTGTTGAATGTTGATGTTGAGGTAGTCTGAATTTCATATCGGTGAA
TGCTTGGTCTGTTGTGGATTTTTCGGATGGTTGAGATGGGGAATGTAAGCAGCGCGTGTTGCTGTGTTAACTTTTATCCA
TATGTAGATACTCGTAGGCTCTTTTATCTGAGGACGAAACTTTTATTTATTTGT---------------------TCATG
AATTCGTTAGGTAACACATCTCTGGGTTTCACACTGATAGTTGATCCTGAAGCCCCAATGCTTATACCAGATGTTTCTCT
CTGTTCAGTGGGTTTGCTATTTTTCTCTTGGTTTCTCTGGATGTCAGTATGAATTGTTGCTGCACCTCAACAAGGGCAGC
TTTGCAGTAGTAGTGAAGGAACAGCGACACTGTCACACTGCAAACTAACCAGGGACTGGTCGCTGCAGTTTGTTCACCTG
TGCTGATGCTACTTCTCCTTTTGCC------AAGAGTTTGCATCCATCTTATCAACATTTGCAATTGCC----------C
AGTTTTGGTTGCCTGGTTTCTTTACTGTTTAGCTTCAC------------------------------------------
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>chr2A_565
AAATAAAGAGCAGGGCAGACCCCCCATTGCTTCACCGTTCTGATCCCCTCTCCTCTCGTCCCCCGACTCCGCGCCGCCGG
CGAGGGTTTGGCTCGCGCTCGGCTGCCCCATGGCCAGCGCCGCTCCTCCTCTCTGCGACCTTCGCCCGCTCTCGGCGACA
GGCGGGTGGGCGAGAGCTGAGCCCCCTGATGCCTCTTAGTAATAAAAATGCCTTTTATATAAAGAAATGCCATATCTTAA
AATCCGAACGAGTAGCATTTCCGACTATCTGTGGGTCAACTCTGACAC--------------------------------
--------------------------------------------------------------------------------
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-------------------------------AACAATTGTTTTTCATTAGAAAAGGCGAGAGCGGAAAAGGGGGGGCATT
GTTCGAGTA--GCCTGGGCTAAACGGGCCACGCAGGAAGTGTTGTAGTCGGAGTCTCGGAGTGGGCCGCC---------G
ACTAGGCAGCAGAAAGAA-----------------------------------AAATAAAGAGCAGGGCAGAAACCCCC-
ACCGCTCGCCCGTTCCG-----ATCCCCTCTCCTCTCGTCCCCCGACTCCGCGCCGCCGGCGAGGGTTTGCCTCGCGCCG
CCCGCCCCCACGGCCGCCGCCGCT---------CCTCCTCTCCCCGAGCCGCGCCTGCCCTCGGGGACGGGCGGGCGAGA
GCCGAGCCCCCTGCCGCCGCCAGATCCGTCGTCCTCGGGCTCAGGTAAGAAGGCCCCGTCCAATCCCCGGCCCTCGAATA
CTCCGTCGCAATTCGTTGGTGGGATTTGTAGGGTG---------TTGATTGCTTTCTTTACCGTCGTCCTCCGGCGCCGT
CGCGGTCTGCAGGGACGTGCCCCGGCGCGCAACCCGCGGGGACGCCGGAGATGAGCTACAGCGGGAGCGGCGGAGGGAAG
CGCCTCCGCACGTCGCCGAGCGAGGCGGAGGGGAGCCCCAGGCGCCGTCGTGGGTCGCCGTCGGTCTACTCTCCGTCGCC
GTCGCCCTACCGGTCGCCCTCGCCGTTGCCGTCCCCGTCGACCTACAGGTCGCTTTCGCACTCGCCGTCGCCCTGCCGCT
CGTGGTCGCAGAGGCCGCCCAGCGACGACGATGCCGACGATCTGAGCCGCAGCCGCGGGTCGGACGACCTCGACCGGCAC
GGCCGGAGGCCTGCCTGGAGGCCGCACGCGAACAAGGAGCTGGGCGAGCATGGGCGCACCGGCGAGTTCAGCGTCCGGAT
CGACGACTACGACCGCCTCTTCACCTGCAAGGCCTGCCGCCGCATGCTCTCGCCGCCGGTCTACCAGGTGACTTCCGGTT
GCAGTTGTAGCACAGTTTTATTTAT----CATTGCGGTCATAATCAACTCAGCCTTGTTCTTGATACATGGTGTGCGCGC
AGTGCCCCTTCGCCCACGTCACCTGCTCGAGGTGCCACGAGGAAGTCGGGGACAACCGATGCAGCTGCTGCGGCAGCAGC
AATGGCTATGGGCGCAACCGCGTCGTCGAGGAGTTCCTAGGCCGCATCCGCTTCTCCTGCCGCAACAAAGTGCATGCCTG
TGAGGCCTTCCTTCCGCACCATGAGATGCGCGAGCATGAGCAGACCTGCCGCCACGAGCCTATCTTCTGCCCTGTTCCCC
AATGCGGCTTCGCCAGCCGGGCTGTCGCACTCACGACCCACCTCACCCTCCGCCACCACTGGGACACGATCAGGTTTCAC
TATGATGAGAACTTCCGGGCCTCTGCCTTCACGTCGACCATCTTCCAGAGCCGCGACGACGGCGAGCTGTTCTTCCTCGA
CAGCTTCAGCGAGGGCCGTGGCATTGCTTTGTCCATGATCTGCATCCGCCCTGAGAACGCCCGTGAGCAGGAGTTTGTGT
ATGAGCTGAAGACGCCGGTAGGCAACGGCGGCAGACGGCCCTGGCTGCAGATGCAGTCGACGGCGCGGAACACATCGCTG
CGTCACGGGCTGGGGGAGAAGGAGAAGGTCTTTCTGCTGGTCCCCAAGGACCTGCCGGGCACCGAGGATGGCAACGTGGA
GGTGTGCATCCGTAAGCTTGGCCGCCAGCGTGACTCTGTATAGGTTAGGTGACCTTGGTTGATGGCAATAC-T-GCTAAA
TTTTATAGGATTACTGCTAGTTGATTCCAGATCATTGCTGAATGTT-ATGTTGAGGTAGTCTGAATTTCATATTGGTGAA
TGCTTGGTCTGTTGTGGAATTTTCGGATGGTTGAGATGGGGAATGTAAGCACCGTATGTTGCTGTGTTAACTTTCAGCTA
TATGTAGATACTCGTAGGCTTTTTTATCTGAGGACGAAACCTTTATTTATTTATGATGGTCTCGCACATGTCATATCATG
AATTCGTCAGGTAACACATCTCCGGGTTTCACACTGATTGTTGATCCTGAAGTCCCAATGCTTATACCAGATGTTTCTCT
ATGTTCAGTGTGTATGCATTTTTCC-CTTGCTTTCTTTGGATGTCAGTATGAATTGCTGCTGCATATCAAGAGCAA----
TTTGCGTGAGTAGTGAAGGAACAGCGACACTG--------CAAACTAACCAGGGATTGGTAGCTGCAGTTTGTTCACCTG
TGCTGATATCACCAACCCTTTTGCGTATATAAAGAGTTTGCTTTCATCTTATCAATATTTGCGATTGAGTTTACATGTGC
AGTTTTGGTTGCTTGGTTTGTTTACTGTTAGCTTCACCATGTAACCCAGCTTTCCTGCATCTATCTTGTAGAGATGCAAG
CAAGCAATGTCTAAATTTTGGCTTTCCGATGGTTAATTGTGTTGTGATTAGTGAGCTTAT--GAAACAAAAGTCTTAGAT
AATTGCAATAAAATTGAAACATTAGCACAACAATGGAAGTTCATTGTTGCAGCATCAAAGCTGCGCTCTTGCAAATGCAG
CAAAACCAGAAAAAGGCATTCGCAACAACATGCAACAATTGGAG--ACAAGAAACTTGTGATTGCTACTGGATCCTTCGT
GATCATATACCACTTAAA--------------ATATAGAGGCAACAACAAATGATTGCCATGGGTCCCAACAACGTCCAC
GTCTTCTAGCGACAACGCACATGTTTTAATTTTCTAAAGAAGAAAACACTTCCAACAATCTACTCCCTTTATAAACCAAT
ATAAAAGTGTTTAGATCATTATTTTAGTGATCTAAACGCTTTTATATTAGTTTACGGAGAAAGTATCTAATTAGACTCTG
AGCAGAGGCACAGTAGGTAACCGAACTTTTTTATTTTGCGAGAAAATCGACTTGTATAATTTGCTACACAA
>SNPs
--------S---S--SS-S---------------------------S------S--------SS-SSS------------
------------S------------------SSS-S--SSS----S----------------------------------
----------S-S----------------S---------S----------------------------------S-----
---------------------S---S-S-----------------------S-----S--------------S-------
S------SSS----------SS-------SS------------------------S-----------------------S
------S------------------S----S-----------------------------S------S-SSS-SSSSSSS
SSS-S-S---SSS--SSSSSSS-SSS-SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S------------S-S----------------------------
--------------------------------------------------------------------------------
---------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------
-----------------SSSSS----------------------------------------------------------
S-------------------------------------------------------------------------------
---------------------------------S--------------------S-------------SS----------
----------------------SS--------------------------------------------------------
SS--S---------------------------------------------------------------------------
--------------------------------------------S-----------------------------S-----
--------------------------------------------------------------------------------
-------------------S---S--------------------------------------------------------
--------------------------------------------------S----------------S------------
---------------------------------------------------------------------S----------
----S--S---------S-------SSSS-------S-------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------S------------------------------------------------
-------------------------S------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S---------------------S----------------------
--------------------------------------------------------------------------------
--S-----------------------------S------------------S----------------------------
------------------------------------------------------------------S------S---S--
----------------------------S---------------------------------------------------
-----------------------------------------------------S-------------S-----S------
-------------------S----------------S-------------------------------------S-----
-------------------S----S-----------------S-------------------------------------
-----------------S--------------------------------------------------------------
------------------S-------------------------------------------------------------
----------------S----------------------------------------------------------S----
-------------------------------------S-----------------S--------S---------------
-----S--------S---------SS-----S--------S--S-----S----------SS--S------S--S-----
S----------S---------------------------S----------------------------------------
--------------S-SSS-SSSS-SS-S--SSSSS-SSSS-S-SS--------S-------------------------
-S----------------SSSSSSSSSSSSSS----------------------------------------S-------
----------S----SS---------------------------------------SS----------------------
---------------------------------------------------------------------S----------
----------------------------------------S-------S----------------------
>forward_235
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-------------------------------------------------------AACCATAAAAGGGCCTCGCA-----
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>reverse_1590
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---------------------------------------------------------------------AACTTTCGGTT
GCAGCTGC------------------------------------------------------------------------
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>forward_573
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------TTGCAAG
GTGTTCCAGCTCA-------------------------------------------------------------------
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>reverse_1637
--------------------------------------------------------------------------------
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------------------------------------TTCAGAATCAACTCAGCCGTGT----------------------
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>forward_574
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------TGCAAG
GTGTTCCAGCTCAA------------------------------------------------------------------
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>reverse_2534
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-----------------------------------------------------ACATGTTGCTGTGTGAACTTCC-----
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