>input_sequence_51871
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--------------------------------------------------------ATGGAACATGGCCGTCTCGACGGC
GAGCGCCACGGGCACGACGCCGCCGCCGCTGAGCTCGGCGAACAGCGGGCTGAAGCGGAGCAGGTACGGCTCGCGGCAGG
TGGTGCCCTCGGGGCAGACCACGACGTGCGCTCCCCCGGCCAGGAGGCGCGCCATGGCGGCGCCGTCGTGGGCGCGGTCC
CTGGCGAGGTGCACGGTGCGGCCGATGGGGGAGATGAGCTCCGAGAGGCGGCTCAGGCTGTAGGACACGGCGCGCACGGG
GCGGTCCAGCGCGATGGACACGTACACGGGGTCGATGAGCGTCCGGTGGTTGCACACGTAGAGCTGCCCGCGCGACGACG
GCGGCGGCGGCGGCGAGCCGCG--------------------GAGGCGCCACGACTGGCCGGTGGCGGCGAGGATCAGCG
TGGCGTACTTGTATGGGAGCGCCATCGCGACGGCGATGCGGGTCACCGCGAGGGCGGCGCCCAAGGGGAGCCACACGAGC
ATGGCGACGGTAGCGAGCGGCGTCGGAAGGAAGGCGAGGCGGCCATCGTGGAAGACGAGCGGCCTCGGGTACTCGTGCCG
CGGCAATGGCCGCCACTTGCTCTTCTCCTCGGCGCTCACCACGTACACCTCCTTGCACGAGGACGACAGAGTGTTGTTGC
AAAGAAATTCCATGGATCCTCCGGAGAAGCCCACGACATCATCGCCGATGGCGCCCTCCATGATCTTCTTCCTCGCCTCG
GACGCCGCCTCGCCGTCCCCTTCCTCCATGAGTCCCGTATAGAGCCCCCACAGCACCTTCATCTCCCTCGCCGCGACGAC
ATCGGCCACGTCAGCCTCCAGGTACTCTTTCAAGAACGGCTCCACCATCACCCTCGGCATCCTGCTGGCCCACACCACCG
CCGCCCTCCTACCGGCAGCGCCAGATGC---CTGCCGCCGCACGGCGTCGAACGCCTCGAGACCGACGTCCTCGAGGAGC
CACCGCGGCAACACGGCACGGCCAGCGCGGAACCTCGTGGCGCGGAGCCCGCAGAAGGCGACGAAGGCCATCGCCCTCAC
GGCCATGTCGCCGCCGATGAAGGCGATGAAAGGGTAGAGGAGGAGCAGGAGGAGGCCCCTGAGCAAGCCGCCGGCCTCGA
TGGCGACCAGCATGAAGTAGGGGAAGAGGGAGCCCGAGGAGAGGAGCAAGCCGCCGTCGACGTCGACGACCAGCGCGGTT
GCGTCGGTGAGCCGCGCCGAGGGAGGCGCCCGCTTGTGGACAAGGACGTCGGAGGGGTGCGGTGGCGGCAATGCGGCCCC
ACAGCCACCATGGAAGAAGAGCGAGAGGAAGTTGGGGAAGATGAACGTGTGGGCTCCCGCCATTTCTCCTCAACCATGCA
GCTAGATGTAGTTGTCGCCGTGTTATATATGCCACCGCGGCACATCGTCGTCATGGTGCAAGCCTAA-------------
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-------
>chr5D_1_TraesCS5D01G099600
ACCATGGCGGGGAAGGGCGGACGGCGAGGGAGCTGCGGACCGCGGCGGGGAAGGACGCCGGAGATGCGGACGGCGGAGGA
GCCCGGCGGAGAATCCTGGCGGAGGGGAGGTGCGACGGAGGAAGACGCCTCCTGATCAATTTCAAATCAGGGGTATTTCC
GTACTTTCACGCCATTTCATCTGGTCGGAACGAAACCCCCAACAATAAATAAATCGGAACAGAGGGAGTATTTGTCTGGT
AGCTGGGCTCATGGGTTATCGGTCAATTTGGGTCCAACTTTGGTGATGAATTGGCAGCTCTAGATTGCCAAAAAGGGCAA
GATGGACAAATGGGGAAGAATTACCATGGTGCCTAGTGGTTATTGCTTCCTCATTTGTTAACTCAGCCACTTTTTGGACA
ATTAGGGAGAACAATTGGAGGCGCCCTTTGCAGTACGTAAGACTACCTACTGAACATTATATGCAGACATTATTTGTGTC
ATTTCTTTCACTAAAAGTATATTTATATTATTTTTCCAAACATATATTCATATAAAAAAGGTAATGCACGTTGAAGAATG
TGCAAAAACTTTAAGAGTATATATATATCTTTAACAGAGGGACTGGTAGTCTACAACTTTACAGAGTACATATTGCTGTA
GCAAGCTCTCGTTCTCAAATTTGTCCTGT-----CTCTCTCTATTTTTTTTTCCTTTTTTTTCGACGCTTGCATCTAATT
CT----TTTTCCGTCACGGTCACTAGCACGCTGCCCCTTTTGCGCGCACCACGCCGTCGTTGCCGGCGAGCATCAGATAC
TTGTCCTTCCTGGTGAGCATGGTGCACTCGTACCCGAGCGACGCCGCCATCAGCCGCTGCACGCGGTTGGCCACGTCCGT
GCTCGCGGCGCCGCCGTCCCTGACGGGCGCC------GTGTCGACCCTGCCGAGGAACTCCACCGTGTAGCACATCCTGG
GGTTGGCCAGGTAGTAGAGCGCGTCCATGGACTTCCA-GCCGCCCGCCGTGGTGCCATGGAACATGGCCGTCTCGACGGC
GAGCGCCACGGGCACGACGCCGCCGCCGCTGAGCTCGGCGAACAGCGGGCTGAAGCGGAGCAGGTACGGCTCGCGGCAGG
TGGTGCCCTCGGGGCAGACCACGACGTGCGCTCCCCCGGCCAGGAGGCGCGCCATGGCGGCGCCGTCGTGGGCGCGGTCC
CTGGCGAGGTGCACGGTGCGGCCGATGGGGGAGATGAGCTCCGAGAGGCGGCTCAGGCTGTAGGACACGGCGCGCACGGG
GCGGTCCAGCGCGATGGACACGTACACGGGGTCGATGAGCGTCCGGTGGTTGCACACGTAGAGCTGCCCGCGCGACGACG
GCGGCGGCGGCGGCGAGCCGCG--------------------GAGGCGCCACGACTGGCCGGTGGCGGCGAGGATCAGCG
TGGCGTACTTGTATGGGAGCGCCATCGCGACGGCGATGCGGGTCACCGCGAGGGCGGCGCCCAAGGGGAGCCACACGAGC
ATGGCGACGGTAGCGAGCGGCGTCGGAAGGAAGGCGAGGCGGCCATCGTGGAAGACGAGCGGCCTCGGGTACTCGTGCCG
CGGCAATGGCCGCCACTTGCTCTTCTCCTCGGCGCTCACCACGTACACCTCCTTGCACGAGGACGACAGAGTGTTGTTGC
AAAGAAATTCCATGGATCCTCCGGAGAAGCCCACGACATCATCGCCGATGGCGCCCTCCATGATCTTCTTCCTCGCCTCG
GACGCCGCCTCGCCGTCCCCTTCCTCCATGAGTCCCGTATAGAGCCCCCACAGCACCTTCATCTCCCTCGCCGCGACGAC
ATCGGCCACGTCAGCCTCCAGGTACTCTTTCAAGAACGGCTCCACCATCACCCTCGGCATCCTGCTGGCCCACACCACCG
CCGCCCTCCTACCGGCAGCGCCAGATGC---CTGCCGCCGCACGGCGTCGAACGCCTCGAGACCGACGTCCTCGAGGAGC
CACCGCGGCAACACGGCACGGCCAGCGCGGAACCTCGTGGCGCGGAGCCCGCAGAAGGCGACGAAGGCCATCGCCCTCAC
GGCCATGTCGCCGCCGATGAAGGCGATGAAAGGGTAGAGGAGGAGCAGGAGGAGGCCCCTGAGCAAGCCGCCGGCCTCGA
TGGCGACCAGCATGAAGTAGGGGAAGAGGGAGCCCGAGGAGAGGAGCAAGCCGCCGTCGACGTCGACGACCAGCGCGGTT
GCGTCGGTGAGCCGCGCCGAGGGAGGCGCCCGCTTGTGGACAAGGACGTCGGAGGGGTGCGGTGGCGGCAATGCGGCCCC
ACAGCCACCATGGAAGAAGAGCGAGAGGAAGTTGGGGAAGATGAACGTGTGGGCTCCCGCCATTTCTCCTCAACCATGCA
GCTAGATGTAGTTGTCGCCGTGTTATATATGCCACCGCGGCACATCGTCGTCATGGTGCAAGCCTAATAATGTGGGGTGG
CTTGCCACGGCGCCCTCGTGCGTGCCTAG---------------------------------------------------
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--------------------------------------------------------------------------TAAACC
TTT---GTACGAATTTTGCTAACAGACAGACAGACAGTCAAC---TGTTCATTAATTATTTG-----TATTTTTTGGCGA
GGGAACTGTTCGTTAATTCCATTTTGGCAGTAAGTGTCACTTTGAGGCCATAAGTCAAAACTATCAAAAAGAGATCTTTG
ACACTGAGAA--GAAATATTTGTTACCACGTGCTCAAAGATCAAACTCCAAAAACCCATAAAATTTCTCATCCTTTCAAG
TTCCAACTCTCTCAGATATACTCGTCGCGCAGTCTCACCCCTATGCTCTCCACGGCACCTAAAGGGTTTGGGAATGTCCA
TGTTGCTGACAAGACCGTGGAACCCTGTGGCACTCCGAGACTAGTTCGATGGAGAGACCTTCGTCGAAAATGTGCTCCCC
ATGGAAAAATGTTTGGA-GGCGTTCGAGGGGATGTTGGGACTCAAGTAGGGAGAGAAGAATGAGAAGGCGGCGGAGGGTG
TGCAGGACCCCACCTCGCCAATCACGGCTTCTACCTTCCAGGGAGAGTGTGATGTTGGCCGTCATGTCGGCTTCGGGTAT
GATGGAGAGGGCAATGAACCTTAAGGCGGCACGGGGCCTCGAAGGTATATTTTCT-AAGGCCATTACGTGATCTATGCCA
ACCTTTAAAGTTTTGGCTCTTACGTCTAATGCAAACTTGTTGAAAGTGGCCTCAGATAGTCATGTTATTTGGAGTCCCGA
GCAAGGCTCACTTTGGAGAGGTTGGAAAGCTTTGGGGCACAGGAGTTGGACCGGGCTGTTATCGCGGAGAGCGTGACGAA
GAGGGGCCCGATTCATACTCGAGCGACTGAGGGGCATGCACGCATGATGGCCATGGCTTCTGATGCGAACCATGCTAGGG
AGGAGACTGGTTCCGACCAGGAGGTGGTTTCTGGTCGTGCCTCGTCCATGGGAGGACGTGACTGTGGGCGCGAAAGAGGT
CGAGCCG
>chr5B_229
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--------------------------------------------------------------------TATTTGTCTGGT
AGCTGGGCTCATGGGTTATCGGTCAATTTGGGTCCAACTTTTGTGATGAATTGGCAGCTCTAGATTGCCAAAAAGGGCAA
GATGGACAAATGGGGAAGAATTACCATGGTGCCTAGTGGTTATTGCTTCCTCATTTGTTAACTCAGCCACTTTTTGGACA
GTTAGGGAGAACAATTGG---------TTGGAGTACGTAAAACAACCTACTGAACATTATATGCATACATTATTTGTGTC
ATTTCTTTCACTAAAAGTATATATT-----TTTTTCCAAACATATATTCATATAAAAAAGGTAATGCACGTTGAAGAATG
TGCAAAAACTTTAAGAGTATATATAT--CTTTAACAGAGGGACTGGTAGTCTACAACTTTACAGAGTATATATTGCTGTA
GCAAACTCTCGTTCTCAAATCTGTCCTGC-------CTCTCTCTATTCTTTTTCTTTTTTTCCGACGCTTGCATTTAATT
CT----TTTTCCGTCACGGTCACTAGCACGCTGCCCCTTTTGCGCGCACCACGCCGTCGTTGCCGGCGAGCATGAGATAC
TTGTCCTTCCTGGTGAGCATGGTGCACTCGTACCCGAGCGACGTCGCCATCAGCCGCTGCACGCGGTTGGCCACGTCCGT
GCTCGCGGCGCTGCCGTCCCTGACGGGCGCC------GTGTCGACCCTGCCGAGGAACTCCACCGTGTAGCACATCCTGG
GGTTGGCCAGGTAGTAGAGCGCGTCCATGGACTTCCA-GCCGCCCGCCGTGGTGCCATGGAACATGGCCGTCTCGACGGC
GAGCGCCACGGGCACGACGCCGTCGCCGCTGAGCTCGGCGAACAGCGGGCTGAAGCGGAGCAGGTACGGCTCGCGGCAGG
TGGTG---------------------------------------------------------------------------
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>chr5A_620
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-----------------------------------------------------------TACAGAGTACATA-TGCTGTA
GCAAACTCTCGATCTCAAATCAAATTTGTTCTGCCTCCCTCTATTTTCTTTTTCTTTTTTTCCGACGCTTGCATGTAGAG
TAATTCTTTTCCGTCACGGCCACTGGCACGCTGCCCCCTTTGCGCGCACCACGCCGTCGTTGCCGGCGAGCATGAGATAC
TTGTCCTTCCTGGTGAGCATGGTGCACTCGTACCCGAGCGACGCCGCCATCAGGCGCTGCACGCGGTTGGCCACGTCCGT
GCTCGCGGCGCCGCCGTCCCTGACGGGCGAC------GTGTCGACCCTGCCGAGGAACTCCACGGTGTAGCACATCCTTG
GGTTGGCCAGGTAGTAGAGCGCGTCCATGGACTTCCA-GCCGCCTGCCGTGGTGCCATGGAACATGGCCGTCTCGACGGC
GAGCGCCACGGGCACGACGCCGTCGCCGCTGAGCTCGGCGAACAGCGGGCTGAAGCGGAGCAGGTACGGCTCGCGGCAGG
TGGTGCCCTCGGGGCAGACCACGACGTGCGCTCCCCCGGCCAGGAGGCGCGCCATGGCGGCGCCGTCGTGGGCGCGGTCC
CTGGCGAGGTGCACGGTGCGGCCGATGGGGGAGATGAGCTCCGAGAGCCGGCTCAGGCTGTAGGACACGGCGCGCACGGG
GCGGTCCAGCGCGATGGACACGTACACGGGGTCGATGAGCGTCCGGTGGTTGCACACGTAGAGCTGCCCGCGCGACGACG
GCGGCGGCGGCAGCGAGCCGCG--------------------GAGGCGCCACGACTGGCCCGTGGCGGAGAGGATCGGCG
TGGCGTACTTGTATGGGAGCGTCATCGCGACGGCGATGCGGGCCACGGCGAGAGCGGCGCCCAATGGGAGCCACACGAGC
ATGGCGACGGTAGCGAGCGGCGTCGGAAGGAAGGCGAGGCGGCCGTCGTGGAAGACGAGCGGCCTCGGGTACTCGTCCCG
CGGCAATGGCCGCCACTTGCTCTTCTCCTCGGCGCTCACCACGTACACCTCCTTGCACGAGGAAGACAGAGTGTTGTTGC
AAAGAAATTCCATGGATCCTCCGGAGAAGCCCACGACATCATCGCCGAAGGCGCCCTCCATGATCTTCTTCCTTGCCTCG
GACGCCGCCTCGCCGCCTCCTTCCTCCATGAGGCCGGTATAGAGCCCCCACAGCACCTTCATCTCCCTCGCCGCGACGAC
ATCGGCCACGTCGGCCTCCAGGTAATCTTTCAAGAACGGCTCCACCATCACCCTCGGCATCCTGCTGGCCCACACCACCG
CCGCCCTCCTACCGGCAGCGCCAGAGGACCACCGCCGCCGCACGGCGTCGAACGCCTCGAGACCGACGTTCTCCAGGAGC
CACCGCGGCAACACGGCGCGGCCAGCGCGGAACCTCGTGGCGCGGAGCCCGCAGAAGGCGACGAAGGCCATAGCCCTGAT
GGCCACGTCGCCGCCGATGCAGGCGATGAAAGGGTAGAGGAGGAGCAGGAGGAGGCCCCTGAGCAAGCCGCCGGCCTCGA
TGGCGACCAGCATGAAGTAGGGGAAGAGGGAGCCCGAGGAGAGGAGCAAGCCGCCGTCGACGTCGACGACCAGCGCGGTT
GCGTCGGTGAGCCGAGCCGAGGGTGGCGCCCGCTTGTGGACAAGGACGTCAGAGGGGTGCGGTGGTGGCAATGCGGCCCC
ACAGCCACCATGGAAGAAAAGCGAGAGGAAGTTGGGGAAGATGAACTTGTGGGCTCCCGCCATTTCTCCTCAACCATGCA
GCTAGATGTAGTTGTCGCCGTCTTATATATACCACCGCGGCACATCGTCGTCATGGTGCAAGCCTAATAATGTGGGGTGG
CTTGCCACGGCGCCCTGGTGCGTGCCTAGGGCCCTGTTTGGTTCATAAGTCTTAAGATTTTTTTTAGTTCCAATTTATAA
GTCCCAAGTCCCTAAAAAGTCCCTACCTGTTTGGTTTCTGGGACTTATAAGTCTCTATAAGACCATATTACAACTATAAG
TCCCTATAAGTCCCTTATTGAGAGTCTTATTTCATAAGTCCCAAATGCCCACTTTAAGTCCCTATAAGTCCCTCCTGTTT
GGTTTAGATGAGACTTATAGGGACTTATTTAAGTCCCTAGACCAATAAGTCCCTGAAAACAAACACCCTTCTAATAAACC
TTT---CCATGAATTTTGCTAGCAGACAGACAGT-------C---TGTTCATTAACTATTATTTGTATATTTTTTGGCGA
GGGCACTGTTTATTAATTCCATTTTGGCAATAAGTGTCACTTTGAGGCCATTAGTTGATACTATCAAAAAGAGATCTTCG
ACGATATGAGAGGAAATATTTGTTACTACATGCTCAAAGATCAAACTCCAAA-ACCCTTAAAATTTCCCATCCTTCCAAG
TTCCAACTCGCTCAGGTATACTCGTCGCGCAGTCTCACCCTTATGCTCTCCACGACACCTAAAGGGTTTGGAAATGTCCA
TGTTACTGACAAGACCGTGGAACTCTATGGCACTCCTGGACTAGTTCGATGGGGAGACCTTCATCGAAAATATGCTCCCC
ATGGAAAAATGTTTGGGGGGCGTTCAAGGGGATGCTGGGACTCAAGTGGGGGGAGAAGAATGAGAAGGCGGCGGAGGGTG
TGCAGGACCCCACCTCGCCAATCACGGCTTCTACCTTCCAGGGAGAGTGTGATGTCGGTCATCACGTCGGGTTCGGGTAT
GATGGAGAGGGCAATGAACCTTAAGGCGACACAAGGCCTCGAAGGTATATTTCCT-AAGCCCATTACGTGATCTATGCCA
ACATTTAAAGTTTTGGCTCTTACGTCTAATGCAAACTTGTTGAAAGTGGCCTCAAGTAGTCATGTTATTTGGAGTCCTGA
GCAAGGCTCCCTTTGGAGAGGTTGGAAAGCTTTGGAGCACAGGAGTTGGCCTAGGCTGTTGTCGCGGAAAGTGTGACGAA
GAGGGGCCTAATTCATACTCGAGTGGCTGAGGGGCATGCACGCGTGATGGCCATGGCTTCTGATGCAAACCATGCTAGGG
AGGAGGCTGGTTCTGATTAGGAGGTGATTTCTGGT---------------------------------------------
-------
>chr4D_750
TTT-----------------------------------------------------------------------------
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-------------------------------------------GCGGACGACGCCGTCGTTGCCGGCGAGCATGAGGTAC
TTGTCCTTCCTGGTGAGCATAGTGCAGCTGTATCCGAGCGCATCTCCGATCTTCTTCTGTACGAGATTGGCCATGTCGGC
GCTCGGCACCTTCCCCTCCCTGACCACCGCC------GTGCGCACCCGCTCCAGGAACTGCACCGTGTAGCACATCCTCG
GGTTGACCATGTAGAAGAACGGGTCGAGGCACTTGAG-GCCCCCCGCCGTGGTGGGGTAGAACATGGCCGTCTCGACGGC
GACACCCACGGGGACCACG---TCGTCGCTGAGCTCCGCGAAAAGTGGACTGAACCGGAGCAGGTACGGCTCGCGGCAGG
TGGTGCCCTCGGGGCAGACGACGACGAGGTCCCCACTCTCCAGGAGTCGGCCCATGGCACGTCCGTCGGCGTCGCGGTCT
CGTGTCAGCCGCACGGTGCGGCCGATTGGCGAGATGAGCTCCGAGAGGCGGCTGAGGCTATACGACACGGCGCGCACCGG
TCGGTCCAGCGCCACTGACACGTACACCGGGTCGAGGAGAGTGCGGTGGTTGCACACAAACAGCTGCCCGCGC-------
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>chr4A_750
TTT-----------------------------------------------------------------------------
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-------------------------------------------GCGGACGACGCCGTCGTTGCCGGCGAGCATGAGGTAC
TTGTCCTTCCTGGTGAGCATGGTGCAGCTGTATCCAAGCGCATCTCCGATCTTCTTCTGCACGAGATTGGCTATGTCGGC
GCTCGGCACCTTCCCCTCCCTGACCACCGCC------ATGCGCACCCGGTCCAGGAACTGCACCGTGTAGCACATCCTCG
GGTTGACCATGTAGAAGAACGGGTCGAGGCACTTGAG-GCCCCCCGCCGTGGTGGGGTAGAACATGGCCGTCTCGACGGC
GACGCCCACGGGGACCACG---TCGTCGCTGAGCTCCGCGAAAAGTGGACTAAACCGGAGCAGGTACGGCTCGCGGCAGG
TGGTGCCCTCGCGGCAGACGACGACGAGGTCCCCACTGTCCAGGAGTCGGGCCATGGCACGTCTGTCGGCGTCGCGGTCT
CGTGTCAGCCGCACGGTGCGGCCGATTGGAGAGATGAGCTCCGAGAGGCGGCTGAGGCTATACGACACGGCGCGCACCGG
TCGGTCCAGCGCCACTGACACGTACACCGGGTCGAGGAGAGTGCGGTGGTTGCACACAAACAGCTGCCCGCGC-------
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>chrUn_750
TTT-----------------------------------------------------------------------------
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-------------------------------------------GCGGACGACGCCGTCCTTGCCGGCCAGCATGAGGTAC
TTGTCCTTCCTGGTGAGCATAGTGCAGCTGTATCCGAGCGCATCTCCAATCTTCTTCTGCACGAGATTGGCCATGTCGGC
GCTCGGCACCTTCCCCTCCCTGACCACCGCC------GTGCGCACCCGCTCCAGGAACTGCACCGTGTAGCACATCCTCG
GGTTGACCATGTAGAAGAACGGGTCGAGGCACTTGAGCCCCCCCCGCCGTGGTGGGGTAGAACATGGCCATCTCGACGGC
GACACCCACGGGGACCACG---TCGTCGCTGAGCTCCGCGAAAAGTGGACTGAACCGGAGCAGGTACGGCTCGCGGCAGG
TGGTGCCCTCGGGGCAGACGAAGACGAGGTCCCCCATCTCCAGGAGTCGGGCCATGGCACGTCCGTCGGCGTCGCGGTCT
CGTGTCAGCCGCACGGTGCGGCCGATTGGTGAGATGAGCTCCGAGAGCCGGCTGAGGCTATACGACACGGCGCGCACCGG
TCGGTCCAGCGCCACTGACACGTACACCGGGTCGAGGAGGGTGCGGTGGTTGCACACAAACAGCTGCCCGCGC-------
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>chrUn_751
-TT-----------------------------------------------------------------------------
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-------------------------------------------GCGGACGACGCCGTCGTTGCCGGCCAGCATGAGGTAC
TTGTCCTTCCTGGTGAGCATAGTGCAGCTGTATCCGAGCGCATCTCCAATCTTCTTCTGCACGAGATTGGCCATGTCGGC
GCTCGGCACCTTCCCCTCCCTGACCACCGCC------GTGCGCACCCGCTCCAGGAACTGCACCGTGTAGCACATCCTCG
GGTTGACCATGTAGAAGAACGGGTCGAGGCACTTGAG-CCCCCCCGCCGTGGTGGGGTAGAACATGGCCGTCTCGACGGC
GACACCCACGGGGACCACG---TCGTCGCTGAGCTCCGCGAAAAGTGGACTGAACCGGAGCAGGTACGGCTCGCGGCAGG
TGGTGCCCTCGGGGCAGACGACGACGAGGTCCCCCATCTTCAGGAGTCGGGCCATGGCACGTCCGTCGGCGTCGCGGTCT
CGTGTCAGCCGCACGGTGCGGCCGATTGGTGAGATGAGCTCCGAGAGCCGGCTGAGGCTATACGACACGGCGCGCACCGG
TCGGTCCAGCGCCACTGACACGTACAC-----------------------------------------------------
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>chr3A_759
--------------------------------------------------------------------------------
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-----------------------------------------------ACGACGCCATCGTTGCCGGCGAGCATGAGGTAC
TTGTCCTTCCTTGTGAGCATGGTGCATCCGTAGCCGAGCGCCTCCCCCATCTTCCTCTGCACGAGGTTGGCCAAGTCGGT
GCTGGGCA------CCTCCCTCCCCATCGCCGCCGTGGTGCGCACCCGCTCCAGGAACTGCACCGTGTAGCACATCCTCG
GGTTCACCATGTAGTAGAGCGGGTCGAGGCACTTGAA-CCCGCCCGCCGTCGTCGCGTAGAACATGGACGTCTCGACGGC
GATGCCGACCGGGACAACG---TCGTCGCTGAGCTCGGCGAACAGCGGGCTGAACCGCAGCAGGTAGGGCTCGCGGCAGG
TGGTGCCCTCGGGGCAGACGACGACGAGGTCGCCGCGGTCCAGGAGGCGCGCCATGGCGCGGCCGTCGCTGTCGCGGTCG
CGCGTCAGCCGCACGGTGCGGCCGATCGGCGAGATGAGCTCCGACAGCCGGCTGAGGCTGTAGGACACGGCGCGCACCTG
CCGGTCCAGCGCCACCGAGACGTACACCGGGTCGATGAGCGTGCGGTGGTTGCACACGAACAGCTGCCCGCG--------
GCCGCGGCCGTGGCCGGGCGGGGGACCCGGCCGCTCCCCCTTGAGCCGCCACGACATGCCGGTGGCCGCCAGGATGGGCG
TGGAGTACCTGTACGGCATGGTGAGCGCGACGGCGAGACGGGCGGCACCCAGGGCGGCGCCGATAGGGAGCCACATGAAC
ACGGCGAGCGTGCTGCCGGCGGTTGGCCGGAGCGCGAGCCGGCCGTCGTGGAACACCATGGCCTTCGGGTACT-------
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>chr3D_759
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-----------------------------------------------ACGACGCCATCGTTGCCGGCGAGCATGAGGTAC
TTATCCTTCCTTGTGAGCATGGTGCATCCGTAGCCGAGCGCTTCCCCCATCTTCCTCTGCACGAGGTTGGCCAAGTCGGT
GCTAGGCA------CCTCCCTCCCCATCGCCGCCGTGGTGCGCACCCGCTCCAGGAACTGCACCGTGTAGCACATCCTCG
GGTTCACCATGTAGTAGAGCGGGTCGAGGCACTTGAA-CCCGCCCGCCGTCGTCGCGTAGAACATGGCCGTCTCGACGGC
GATGCCGACCGGGACAACG---TCGTCGCTGAGCTCGGCGAACAGCGGGCTGAACCGCAGCAGGTACGGCTCGCGGCAGG
TGGTGCCCTCGGGGCAGACGACGACGAGGTCGCCGCGGTCCAGGAGGCGCGCCATGGCACGGCCGTCGCTGTCGCGGTCG
CGCGTCAGCCGCACGGTGCGCCCGATCGGCGAGATGAGCTCCGACAGCCGGCTGAGGCTGTAGGACACGGCGCGCACCTG
CCGGTCCAGCGCCACCGACACGTACACCGGGTCGATGAGCGTGCGGTGGTTGCACACGAACAGCTGCCCGCG--------
GCCGCGGCCGTGGCCAGGCGGGGGACCCGGCCGCTCTCCCTTGAGCCGCCAAGACATGCCGGTGGCCGCCAGGATGGGTG
TGGAGTACCTGTACGGCACGGTGAGCGCGACGGCGAGACGGGCGGCACCCAGGGCGGCGCCGATAGGGAGCCACATGAAC
ATGGCCAGCGTGCTGCCGGCGGTTGGTCGGAACGCGAGCCGGCCGTCGTGGAACACCATGGCCTTCGGGTACT-------
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>chr3B_759
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-----------------------------------------------ACGACGCCATCGTTGCCGGCGAGCATGAGGTAC
TTGTCCTTCCTTGTGAGCATGGTGCATCCGTAGCCGAGAGCTTCCCCCATCTTCCTCTGCACGAGGTTGGCCAAGTCGGT
GCTAGGCA------CCTCCCTCCCCACCGCCGCCGTCGTGCGCACCCGCTCCAGGAACTGCACTGTGTAGCACATCCTCG
GGTTCACAATGTAGTAGAGCGGGTCGAGGCACTTGAA-CCCGCCCGCCGTCGTCGCGTAGAACATGGCCGTATCGACGGC
GATGCCGACCGGGACAACG---TCGTCGCTGAGCTCGGCGAACAGCGGGCTGAACCGCAGCAGGTACGGCTCACGGCAGG
TGGTGCCCTCGGGGCAGACGACGACGAGGTCGCCGCGGTCCAGGAGGCGCGCCATGGCACGGCCGTCGCTGTCGCGGTCG
CGCGTCAGCCGCACGGTGCGGCCGATCGGCGAGATGAGCTCCGACAGCCGGCTGAGGCTGTACGACACGGCGCGCACCTG
CCGGTCCAGCGCCACCGAGACGTACACCGGGTCGATGAGCGTGCGGTGGTTGCACACGAACAGCTGCCCGCG--------
GCCGCGGCCGTGGCCAGGCGGGGGACCCGGCCGCTCCCCCTTGAGCCGCCACGACATGCCGGTGCCCGCCAGGATGGGCG
TAGAGTACCTGTACGGCACGGTGAGCGCGACGGCGAGACGGGCGGCACCCAGAGCGGCGCCGATAGGGAGCCACATGAAC
ATGGCCAGCGTGCTGCCGGCGGTTGGCCGGAACGCGAGCCGGCCGTCGTGGAACACCATGGCCTTCGGGTACT-------
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>chr5B_1103
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------------------------------------------------------------------------------GG
TGGTGCCCTCGGGGCAGACCACGACGTGCGCTCCGCCGGCCAGGAGGCGCGCCATGGCGGCGCCGTCGTGGGCGCGGTCC
CTGGCGAGGTGCACGGTGCGGCCGATGGGGGAGATGAGCTCCGAGAGCCGGCTCAGGCTGTAGGACACGGCGCGCACGGG
TCGGTCCAGCGCGATGGACACGTACACGGGGTCGATGAGCGTCCGGTGGTTGCACACGTAGAGTTGCCCGCGCGACGACG
GCGGCGGCGGCGGCGAGCCTCG--------------------GAGGCGCCACGACTGGCCGGTGGCGGCGAGGATCAGCG
TGGCGTACTTGTATGGGAGCGCCATCGCGACGGCGATGCGGGTCACCGCGAGAGCGGCGCCCAAGGGGAGCCACACGAGC
ATGGCGACGGTAGCGAGCGGCGTCGGAAGGAAGGCGAGGCGGCCGTCGTGGAAGACGAGCGGCCTCGGGTACTCGTGCCG
CGGCAATGGCCGCCACTTGCTCTTCTCCTCGGCGCTCACTACGTACACCTCCTTGCACGAGGAAGACAGAGTGTTGTTGC
AAAGAAATTCCATGGATCCTCCGGAGAAGCCCACGACATCATCGCCGACGGGACCCTCCATGATCTTCTTCCTCGCCTCG
GACGCCGCCTCGCCGTCCCCTTCCTCCATGAGTCCGGTATAGAGCCCCCACAGCACCGTCATCTCCCTCGCCGCGACGAC
ATCGGCCACGTCAGCCTCCAGGTACTCTTTCAAGAACGGCTCCACCATCACCCTCGGCATCCTGCTGGCCCACACCACCG
CCGCCCTCCTACCGGCAGCGCCAGATGC---CCGCCGCCGCACGGCGTCGAACGCCTCGAGACCGACGTCCTCGAGGAGC
CACCGCGGCAGCACGGCACGGCCAGCGCGGAACCTCGTGGCGCGGAGCCCGCAGAAGGCGACGAAGGCCATCGCCCTCAC
GGCCATGTCGCCACCGATGAAGGCGATGAAAGGGTAGAGGAGGAGCAGGAGGAGGCCCCTGAGCAAGCCGCCGGCCTCGG
TGGCGACCAGCATGAAGTAGGGGAAGAGGGAGCCCGAGGAGAGGAGCAAGCCGCCGTCGACGTCGACGACCAGCGCGGTT
GCGTCGGTGAGCCGAGCAGAGGGAGGCGCCCGCTTGTGGACAAGGACGTCGGAGGGGTGCGGTGGCGGCAATGCGGCCCC
ACAGCCACCATGGAAGAAGAGCGAAAGGAAATTGGGGAAGATGAACTTGTGGGCTCCCGCCATTTCTCCTCAACCATGCA
GCTAGATGTAGTTGTCGCCGTCTTATATATACCATCGCGGCACATCGTCGTCATGGTGCAAGCCTAATAATGTGGGGTGG
CTTGCCACGGCGCCCTCGTGCGTGGCTAG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TAAACC
TTTCTAGTACGAATTTTGCTAACAGACACACAGT-------CAACTGTTCATTAG---TTACTTGTATTTTTTTGGGCGA
GGGCACTGTTTGTTAATTCCATTTTGGCAATAAGTGTCACTTTGAGGCCATAAGCCGAAACTATCAAAAAGAGATCTTCG
AC------------------------TACGTGCTCAAAGGTC-AACTCCAAAAACCCTTAAAATTTCTCATCCTTTCAAG
TTCCAACTCTCTCAGATATACTCATCGCGCAGTCTCACCTCTATGCTCTCCGCGGCACCTAAAGGGTTTGGGAATGTCCA
TGTTGCTGACAAGGCCGTGGAACCTTGTGGCACTTCGGGACTAGTTTGATGGGGAGACCTTCATTGAAAATGTGCTG-CC
ATGAAAAAATGTTGGGA-GGCTTTCGATGGGACGTTGGGACTCAAATAGGGGGAGAAGAATGAGAAGGCGGCGGAGGGTG
TGCAGGACCCCACCTCGCCAATCACTGCTTCTACCTTCCAGG-AGAGTGTGATGTCGGCCGTCACATCGATTTCGGGTAA
GATGGAGAGGGCAATGA-CCTTAAGGCGGCACGGGGCTTCGAAGGTATATTATTCCAAGCCCATTGTGTGATCTATGCCA
TCCTTTAAAGTTTTGGCCCTTACGTCTAATGCAAACTTGTTGAAAGTGGCCTCAAATAGTCATGTTATTTGGAGTCCCGA
GCAAGGCTCCCTTTGGAGAGGTTGGGAAGCTTTGGGGCACAGGAGTTGGACCAGGCTGTTGTCGCGGAGAGCGTGACGAA
GAGGGGCCTGATTCATACTTGAGCGGCTGAGGGGCAGGC-----------------------------------------
--------------------------------------------------------------------------------
-------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
S-----------------SSSSSSSSS---S---------S--S---------------------S--------------
----------------------S-SSSSSS--------------------------------------------------
--------------------------SS----------------------------------------------------
----S---------------S--------------------------S----S--------S------------S-----
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
---------------------------------------------------------------S----------------
------------------------------------------------S-------------------------------
-----------------------------------S--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------S-----------------------------------------------------------------
----------------------------------------------S---------------------------------
---------------------S--------S-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------SSSSSSSS--------------S----SS------------------
---S------S------------------S--------------------------S---------------------S-
--SS-SS--S----------------S------------------------------S----------------------
--------------------------------------------------------------------------------
-------------------------------------S--------------S---------S-----------------
---------------------------------------------------S----------------------------
-------------------------------------------------------S--------S-----S---------
-----------------------------------------------------------S--------------------
------------------------------------------------------S-------------------------
---------S------------------------------------------S-------S-------------------
--------S----------------S-----------------S----------------------S-------------
-----S-------S--SS--------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_423
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AGGGAGAACAATTGGAGGCG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>reverse_1796
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------CGTATAGAGCCCCCACAGC--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>forward_441
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CGCCCTTTGCAGTACGTAAG---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>reverse_2884
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AACTGTTCGTTAATTCCATTTTGGC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
