>input_sequence_51661
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----------------------------ATGTCTCCCTCTCTTGATCTGCCCTCCCGGATCCTGCCCCGCGTGCTCATCG
TCTCCCGCCGCACCGTCCGCAAGAACAAGTTCGTCGACTTCGTCGGTGAGT--TTCTTGCT-CATCACTTCATCCATGTT
GGGAAAGTGCTGGATTCGTTGGAACTTGGAAGAATGTTCCAATTGCTGACATTTGCATG-----CATGGATGGATGCAGG
GGAGTACCATCTGGACCTGGTGGTGGGCTACGGCGCGGTGCCGGTCATCGTGCCGCGGGTCGCCGGCGTGCACGCCATGC
TTGACTCCTTCGAGCCCATCCATGGCGTGCTCCTTTGCGAGGGCGAGGACATCGACCCCTCCCTCTACGACGCCGGCGGC
GACGGC---ATCGACGGCGACGCGCTCTCGCCGGAGCAGCTCGAGGCCGTGCGGCGCCTCCACCCGAGCGACGCCGCGGT
GGACCACGAGAAGGACTCCATCGAGCTCCTCCTAGCGCGCCGCTGCCTCGAGCGCAGCGTCCCGTTCCTCGGCATCTGCC
GCGGCTCGCAGGTGCTCAACGTCGCCTGCGGCGGCTCGCTCTACCAAGACGTCGAGCAAGAGCTGCACCCCGCG---GCC
GATGCCACCGTCTGCCACATGGACTACGCCAACTACGACGGGCACAGGCACCCGGTGCGCGTGCTCCCCGACACGCCGCT
GCACGACTGGTTCGCCGAGTCGCTGATCGGCGGCGACCAGCTGATGGTGAACAGCTACCACCACCAGGGCGTGCGGCGCC
TGGCCGAGCGGTTCGTCCCGATGGCGCATGCGCCGGACGGGCTGGTCGAAGGGTTCTACGACCCTGACGCATACAACCCC
GGCGAAGGCAAGTTCCTCATGGGGCTCCAGTTCCACCCGGAGCGCATGCGCAAGGAGGGCTCCGACGAGTTCGACTACCC
CGGCTGCGCCAAGGCCTACCAGGAGTTCGTCCGCGCAGTCGTCGCATACAAGGCGAAGCTGGCCGCCGCGCATGCTCATG
TGCACGTCCAGAGCGCGGTCACCACGCCGGCGACATTGAACCACGAAATGGAGAAGCAGCGCAAGGTGATCGGCCGGAGC
GTCTCGCTCGCCAAGAACATGTACATGTTCGGCAACAACAACAGCGCGCAGCATCCGGCGCAGCACCGGGACGGGGACCT
GGACGGCGGCGCGGAGTTCCTGGAGTCGAACACGGCGCTGAGCGTGCAGCAGGAGAAGCGGCTGAAGCAGATGGGCGCGA
CGGTCCGGAATGCGTCGGGGTACATGAACAGGCTCAAGGTTAGCGAGGAGCGGGAGGCGGCAGCGCGGGCGCTCATGGCG
AAGATGTCGGTCGCCCAGCTCGCCAGCCTCGCCGCCTTCTACCGCGCCATGGGCAACGTCTGCTCCGAGGTGCTCGACGC
CAAGCTCCAGCCGCCGTCTACAACCCTGCACGAGTGA-------------------------------------------
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>chr3B_1_TraesCS3B01G059500
TTATCATTTTTTCCCTTTGGTAAACCAATAAGTGCTTACCAAATAAAATCCTAAAACTTA-TTTTGGCAGGTAAATCACA
TGCAGAAATTTATTTGGTAAAGACTTATTTACATAATCATATTAATATGGGCAGGTAAATAATGAGATAACATATTAGAA
TATTTATACCCTGTTGCAATGCATTGGCTATTATCTATTTAACTATCAGAATTTTGAAAACATAGCCATTGTTTAAGTGC
CCTGTGGTGAAGGAGGCTGAGTAGAGGTTAGTGCGAGCTGTAGGAGCTA-TTTTTTT-TTCTCCCGGAAAAAGTTTCAAT
CTATTCATCATTTGTCATGGCAGTACAAAAAATATCAGAAACAGT-AAAAATTACATTCAGATCC-TACAACACGTAGCG
ACGACTATAAGCACTGGATGAGCGACCCGAACACAAACTCAAAGTTCATCTAATTCAAATAGAGCCCAAAGTTGACATGG
CCTTCTGGCAGATTAAATAAATAAGTAGTGTAATTTTTATGTGATTGTGGGATGAAGACTGAAGAGATTAGATTGAAAGA
CTGCTCCGTAGCATATGCTGTACTGGACTGCTGGATATGCGTCAATCGCTAATGCTGGCCAGCTAGAGTGTATTTTC--A
ATAAG-AAAAAG-AAAAACTTACTTTTGGGTGTACGTAGCAATACCACACTTGGTTCCTTTGACCTCTGGTGTCTGCACG
CGGCGGCTAGACGGTGTTGCACTGCACACAGACGTCGTTAATGACGTGGGCGCAAGTTTC---------CTCGTCCTGAC
GCGCATGGTAATACGCTCCAGTTTTGGCACTAAATCATTTTTTACTCAGAGCAAGGATGATTTCGTGATAAGATTGCTGC
ATCAGCCACCGCC-----------CCCGATTGCCTTCTACAAATACTACCTCGATCCAGATACATCTTCCCCACAGAAAT
CCAATAAAACCAACAA--------------------GATCTCCAAC---------------CTTCTGGTTGAGAATTTTG
AGGCAAGAGGTAG----CTAGCCTAGCCATGTCTCCCTCTCTTGATCTGCCCTCCCGGATCCTGCCCCGCGTGCTCATCG
TCTCCCGCCGCACCGTCCGCAAGAACAAGTTCGTCGACTTCGTCGGTGAGT--TTCTTGCT-CATCACTTCATCCATGTT
GGGAAAGTGCTGGATTCGTTGGAACTTGGAAGAATGTTCCAATTGCTGACATTTGCATG-----CATGGATGGATGCAGG
GGAGTACCATCTGGACCTGGTGGTGGGCTACGGCGCGGTGCCGGTCATCGTGCCGCGGGTCGCCGGCGTGCACGCCATGC
TTGACTCCTTCGAGCCCATCCATGGCGTGCTCCTTTGCGAGGGCGAGGACATCGACCCCTCCCTCTACGACGCCGGCGGC
GACGGC---ATCGACGGCGACGCGCTCTCGCCGGAGCAGCTCGAGGCCGTGCGGCGCCTCCACCCGAGCGACGCCGCGGT
GGACCACGAGAAGGACTCCATCGAGCTCCTCCTAGCGCGCCGCTGCCTCGAGCGCAGCGTCCCGTTCCTCGGCATCTGCC
GCGGCTCGCAGGTGCTCAACGTCGCCTGCGGCGGCTCGCTCTACCAAGACGTCGAGCAAGAGCTGCACCCCGCG---GCC
GATGCCACCGTCTGCCACATGGACTACGCCAACTACGACGGGCACAGGCACCCGGTGCGCGTGCTCCCCGACACGCCGCT
GCACGACTGGTTCGCCGAGTCGCTGATCGGCGGCGACCAGCTGATGGTGAACAGCTACCACCACCAGGGCGTGCGGCGCC
TGGCCGAGCGGTTCGTCCCGATGGCGCATGCGCCGGACGGGCTGGTCGAAGGGTTCTACGACCCTGACGCATACAACCCC
GGCGAAGGCAAGTTCCTCATGGGGCTCCAGTTCCACCCGGAGCGCATGCGCAAGGAGGGCTCCGACGAGTTCGACTACCC
CGGCTGCGCCAAGGCCTACCAGGAGTTCGTCCGCGCAGTCGTCGCATACAAGGCGAAGCTGGCCGCCGCGCATGCTCATG
TGCACGTCCAGAGCGCGGTCACCACGCCGGCGACATTGAACCACGAAATGGAGAAGCAGCGCAAGGTGATCGGCCGGAGC
GTCTCGCTCGCCAAGAACATGTACATGTTCGGCAACAACAACAGCGCGCAGCATCCGGCGCAGCACCGGGACGGGGACCT
GGACGGCGGCGCGGAGTTCCTGGAGTCGAACACGGCGCTGAGCGTGCAGCAGGAGAAGCGGCTGAAGCAGATGGGCGCGA
CGGTCCGGAATGCGTCGGGGTACATGAACAGGCTCAAGGTTAGCGAGGAGCGGGAGGCGGCAGCGCGGGCGCTCATGGCG
AAGATGTCGGTCGCCCAGCTCGCCAGCCTCGCCGCCTTCTACCGCGCCATGGGCAACGTCTGCTCCGAGGTGCTCGACGC
CAAGCTCCAGCCGCCGTCTACAACCCTGCACGAGTGACC-----------------TGTGCGC------TCTGTCTCTGT
GAACCTGGCCGGAAATGCTTGCTCAGTTCATCAGAAAT-C-AAATGTTGCATGGCATCCTGAATTAATTAAACCGTGTGA
TGTTGATGCATGTC---ACTCGCGAAGTGTTACTAGTTGACTTTGTTTCTGGGTCCGTACAAGGCATCTAG-CCGCTGAC
TTCGATGAGCTCAAAGGAAAGACGAAGAGAGTAAGTAGTGTAGATCGTTGGTAATTGAGGTGCCATTCTGATCCAGTGGT
CATCCCCCTCGTATGTACTCCTATCTAACTTGTGTACCACAGTTTCTTCATCGAATTAGCTTGATGACGAAGAGGGAAAA
TATGAAGCTACTTTTCCACTGCGCAGGAGGGGCGATGATGTTGGTGCACCCGCGGCTCGGCTTGCTTTACTGTTTGTAGT
CGTTGTTACGTGCTTTACAGATGTGGATACAATATTTTTTCTTCGGATGTTCTTTATGCTACCTTGACAACTA-------
--------------------------------------ATAAATAGATCGTGTGTTTTCTTTAAA--AAAAATAGCAAAT
----GTGTTGACTTCATCAGTTGGACGGCTAGCATTTTTT--AGCAAGTTCCGTTCTGAAACCACAACTACTGGCTAGT-
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-----AGTAACATTCAGTTGGACAAAACAAAAACTTATCGCCGCATCTGCATGACGGCAGGAAAAGAGTAGTA-------
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------------------------------------------------------------TAGCAAAGTTGCTTGTCACA
TGGGAAGCGCCAAAGGCACAGCTGATGGCCACGGACGGCCTAGGAGCTTCATTCAGGGTGGTTGCCAACTAACTTCGGAG
AAGAACTGCTAGTGACACCCTGATGTGCCGGAGAAAACGCACGAAGGTTGCAGCTCTACATGGTGGCAGGCATGCATGGC
CAACAGGTTGCAGCTCTGCCGCAACACTTGGCTAGCAGGCGCAAAGCAAGATATATATCACCAATTCGCCATTGAGTGTT
CAACAGTAACGCCAGATCTGAGCGATAACTACGGCGCATCCCAGGGTAGCGTAGGCAGCACTTGCACGGCGC
>chr3A_1
TTATCA-TGTTTTCCTTTGGTAAGCCAATAAGTGCTTACCAAATAAAATCCTAAAACTTATTTTTGGCAGGTAAATCACA
TGCAGAAATTTATTTG-TAAGCACTTATTTACATAATCATATTAATATGGGAAGGTAAATAATGGGCTAGCATATTAGAA
TTTTTATAGCCCATTGCAATTCATTGATGATTATCTATTTAACTATCACAATTTTGGAAACGTAGCCATTGTTTAAACTT
GATAGA-TGATGGGGGCTGAGTAGAGGTTGGTGCGAGCTGTAGT---TGTTTTTTTT-TTCTTCCGGAAAAACTTTCAAT
CTATTCATCATTTGTCATGACAGTACAAAAAATATCATAAGCAAC-AAAAATTATATCCAGATCCATAGAATACCTGACA
ACGACTATAAGCACTG---GAGCAACACGAACACAAACTTAAAGTTCATCTAAACCAAATAGAGCCCAAAGTTGACATGG
CTTTCTGGCATTTTAAATTAGTGTGATT-----------TGTCATTGTGGGATGAAGACTGAAGAGATTAGAGCAA----
----TCCGTAGCATATCCTGTACTGGAGTGCTGGATATGCGTCAATGACCAATGCTGACCAGCTAGAGTATATTTCA--A
A-AAG-AAAAAG-AAAAACTTACTTTTGGGTGTACGTAGCAACACCACAATTGGTCCCTTTGACCTGTGGTGTCTGCACG
CGGCGGCTAGACGGTGTTGCACTGCACACAGACGTCGTTAATGACGTGGGCGCAAGTTTC---------CTCCTCCTGGC
GCGCATGGTAATACGCTCCAGTTTTGGCACTAAATCAATTTTTACTCAGAGCCAGGATGATTTCGTGATAAGATTGCTGC
ATCAGCTACCGCC-----------CCCGATTGCCTTCTATAAATAC---GTCGATCCAGATACATCTTCCCCACACAAAT
CCAAGAAAACCAACAAGAT--CACCGACCGACCATTGATCTCCAAC---------------CTTCTGGTTGAGAATTCCG
AGGCAAGAGGTAG---------CTAGCCATGTGTCCCTCCCCTGATCTGTCCTCCCGGATCCTCCCCCGCGTGCTCATCG
TCTCCCGCCGCACCGTCCGCAAGAACAAGTTCGTCGACTTCGTCGGTGAGT--TTCTTGTTTCATCACTTTATCCATGCC
GGAAAGGTGTTGGCTTCGTTGGAAGAA----------------TGCTGCAATTTCTGACGTTTCCATTGATGGATGCAGG
GGAGTACCACCTGGACCTGGTTGTGGGCTACGGCGCGGTGCCGGTCATCGTGCCGCGGGTCGCCGGCCTGCACGCCATGC
TCGACTCCTTCGAGCCCATCCACGGCGTGCTACTCTGCGAGGGCGAGGACATCGACCCCTCCCTCTACGACGCCGGCGGC
GACGAC---GGCGACGGCGACGCGCTCTCCCAGGAGCAGCTCGAGGCCGTGCGGCGCCTCCACCCGAGCGACGCTGCCCT
GGACCACGAGAAGGACTCCATCGAGCTCCTCCTCGCGCGCCGCTGCCTCGAGCGCAACGTCCCGTTCCTCGGCATCTGCC
GCGGCTCGCAGGTGCTCAACGTCGCCTGCGGCGGCTCGCTCTACCAGGACGTCGAGCACGAGCTCCACCCCGCG---GCC
GACGATGCCGTCTGCCACATGGACTACGCCAACTACGACGGGCATCGGCACCCTGTGCGCGTGCTGCCCGGCACGCCGCT
GTACGACTGGTTCGCGGAGTCGCTGCTCGACGGCGACCAGCTGATGGTGAACAGCTACCACCACCAGGGCGTGCGGCGGC
TTGCCGAGCGGTTCGTGCCGATGGCGCATGCGCCCGACGGCCTGATCGAAGGGTTCTACGACCCTGAGGTGTACAACCCC
GGCGAGGGCAAGTTCATCATGGGGCTCCAGTTCCACCCGGAGCGCATGCGCAAGGAGGGCTCCGACGAGTTCGACTTCCC
CGGCTGCGCCAAGGCCTACCAGGAGTTCGTCCGCGCGGTGGTGGCATACCAGGGGAAGCTTGCCGCCACGCAC------G
TGCACGTCCGGAGCGCGGTCACCACGTCGCCCAAACTGAACCAGGAAGTGGAGAAGCAGCGCAAAGTAATTGGGCGGAGC
GTCTCGCTCGCCAAGAACATGTACGTGTTCGGCAACAACACCGTAGCGCAGCTTCCGGCGGAGCACCGGAACGGGGACCT
TGACGCCGGCGAGGAGCTCCTGGCGTCCAACACGGCGCTGAGTGTGCAGCAGGAGAAGCGGCTGAAGCAGATGGGCGCGA
CGGTGCGGAACGCGTCGGGGTACATGAACAGGCTCAAGGTGAGCGACGAGCGGGAGGCGGCGGCGCGGGCCCTCATGGCG
AAGATGTCGGTAGCCCAGCTCGCCAGCCTCGCCGCCTTCTACCGCGCCATGGGCAACGTCTGCTCCGAGGTGCTCGACGC
CAAGCTCCAACCGCCGTCTCCAACCCTGCACGAGTGACC-----------------TG---------------------T
GAACCTGGCCGGAAATGCTTGCTTGGTTCATAAGAAAT-CCAAGTGGTGCATGGCATCCTGAATTAATTAGACCGTG--A
TGTTGATGCATGTA---ACTCGACAAGTGT---TAGTTGACTTTGTTTCTGTGTCCGTACATGGCATCTAG-C-GCTGAC
TTTGATGAGCTGAAATGAAAGACGAAGAGAGTAAGTAGTGTAGATCGTTCGTAATTGAGGTGTCATTCTGATCCAGTGGT
CAT-CCCCTCGTATGTACTCCTATCTAACTTGTGTACCACAGTTTCTTCATCGAATTAGCTTCATGAAGCGAA---AAAA
TATGAAGCTACTTTTCGACTGTGCAGGAGGGG------------------------------------------------
-----------------------TGGATACAATA-TGTTTCTTCTGATGTTCTCTGTGCTACCTTGACAA----------
-----------------------------------TTGATAAATATATCGAATGTTCTCTTTAAAAGAAAAATAGCAAAT
----GTGTTGACTTCATCAGTTGGACGGCTAGCATTTTTT--AGCAAGTTCCGTTCTCAAACCACTACTACTGGCTAGT-
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-----AGTAACATTCTGTTGGACAAAACAAAAACTTATCGCCGCATCTGCATGACGCCAGAAAG----------------
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-----------------------------------------------------GGAGCAGTAGCAAAGTTTTTGGTCACA
TGGGAAGCGCCAAAGGCACAGCTGATGGCCACGGACGGTCTAGGAGCTTCATTCAGGGTAGTTGCCAACTAACTTCGGAG
GAGAACTGGTAGTGGCACCCTGATGTGCCGTGGAAAATGCACGAACGAACGAACG--ACATGGTGGCATGCATGCATGGC
CAACAGGTTGCAGCTCTGCCGCAACACTTGGCCAGCAGGCG---------------------------------------
------------------------------------------------------------------------
>chr3D_1
TTATCATTTTTTTCCTTTGGTAGGCCAATAAGTGCTTACCAAATAAAATCCTAAAACTTATTT-TGGCAGGTAAGTCACA
TGCAAAAATTTATTTGGTAAACACTTATTTACATAATCATATTAATATGGGCAGGTAAATAATGGGCTAACATGTTAAAA
TATTTATACCCTGTTGCAATGCATTGGCGATTATCTATTTAACTATCAGAATTTTGGAAACATAGCCATTGTCTTAG-GC
CCAGTGGTGATGGAGGTTCAGTAGAGGATGGTGCGAGCTGTAGTAGCTGTTTTTTTA-TTCTTCCGGAAAAACTTTTAAC
CTATTCATCATGTGTCGTGGCAGTA-AAAATATATCAGAAACAAC-AAAAATTACATCCAGATCCGTAGAACACCTAGCG
ACGACTATAAGCACTGAAGGAGCGTAT-----ACAAACTCAAAGTTCATCTAATCCAAATAGAGCCCAAAGTTGACATGG
CTTTCTGTCAGATTAAATAAATAAATAGTATGATTTTTATGTCATTGTGGGATGAAGACTGAAGAGATTAGAGCAA----
----TCCGTAGCATATACTGTGCTGGACTGCTGGATATGCGTCAATCACGAGTGCTGGCCAGCTAGAGTGTATTTTC--A
ATGAGAAAAAGAAAAAAACTTACTTTTGGGTGTACGTAGCAATACCGCACTTGGTCCCTTTGACCTCTGGTGTCTGCACG
CAGCGGCTAGACGGTGTTGCACTGCACACAGAGGTCGTTAATGACGTGGGCGCAAGTTTC---------CTCGTCCTGAC
GCGCATGGTAATACGCTCCAGTTTTGGCACTAAATCATATTTTACTCAGAGCAAGGATGATTTCGTGATAAGATTGCTGC
ATCAGCTACCGCC-----------CCCGATTGCCTTCTATAAATAC---GTCGATCCAGATACATCTTCCCCACACGAAT
CCAAGAAAACCAACCATTGATCTTCAACCTCCACACAAGTCCTTCGGTTAACAAGGAATCACTTCTGGTTGAGAATTTCG
AGGCAAGAGGTAG---------CAAGCCATGTCTCCCTCCCCTGATGT---------GATCCTCCCCCGCGTGCTCATCG
TCTCCAGGCGCACCGTCCGCAAGAACAAGTTCGTCGACTTCGTCGGTGAGT--TTCTTGTT-CATCACTTCATCCATCTT
GGGAAAGTGTTGGATGCGTTGGAAGAA----------------TGCTGACATTTGGC-------CATGGATGGATGCAGG
GGAGTACCACCTGGACCTGGTGGTGGGCTACGGCGCGGTGCCGGTCATCGTGCCGCGGGTCGCCGGCGTGCACGCCATGC
TCGACTCCTTCGAGCCCATCCACGGCGTGCTCCTCTGCGAGGGCGAGGACATCGACCCCTCCCTCTACGACGCCGGCGGC
GACGGCGACGGTGAAGGCGACGCGCTCTCGCAGGAGCAGCTCGAGGCCGTGAGGAGCCTCCACCCGAGCGACGCCGCCGT
GGACCACGAGAAGGACTCCATCGAGCTCCTCCTCGCGCGCCGCTGCCTCGAGCGCAGCGTCCCGTTCCTCGGCATCTGCC
GCGGCTCGCAGGTGCTCAACGTCGCCTGCGGCGGCTCGCTCTACCAGGACGTCCAGCACGAGCTCCACCCCGCGACTGCC
GACGCCGCCGTCTGCCACATGGACTACGCCAACTACGACGGGCACCGGCACCCGGTGCGCGTGCTCCCCTGCACGCCGCT
GCACGACTGGTTCGCGGAGTCGCTGCTCGACGGCGACCAACTGATGGTGAACAGCTACCACCACCAGGGCGTGCGGCGGC
TGGCCGATCGGTTCGTGCCGATGGCGCATGCGCCGGACGGCCTGATCGAAGGGTTCTACGACCCCGACGCGTACAACCCC
GGCGACGGCAAGTTCATCATGGGGCTCCAGTTCCACCCGGAGCGCATGCGCAAGGAGGGCTCCGACGAGTTCGACTACCC
CGGCTGTGCCAAGGCCTACCAGGAGTTCGTCCGCGCGGTCGTGGCATACCAGGGGAAGCTGGCCGCCGCGCATGCTCATG
CCCACGTCCAGAGCGCGGTCACCACGCCGGCCGAACTGAACAGGGAAATGGATAAGCAGCGCAAGGTCCTCGTCCGGAGC
CTCTCGCTCGCCAAGAACATGCACGTCTTTGGCAACAACACCGGCGTGCAACAGACGGCGGAGCACCGGGACGGGGACCT
TGACGCCGGCGCGGAGTTCCTGGAGTCGAAGACGGCGCTGAGCGTGCAGCAGGAGAAGCGGCTGAAGCAGATGGGCGCGA
CGGTGAGGAACGCGTCGGGGTACATGAACAGGCTCAAGGTGAGCGAGGAGCGGGAGGCGGCGGCGCGGGCGCTCATGGCC
AAGATGTCGGTGGCCCAGCTCGCCAGCCTCGCCGCCTTCTACCGCGCCATGGGCAACGTCTGCTCCGAGGTGCTCGACGC
CAAGCTCCAGCCGCCGTCTCCAACCCTGCACGAGTGACC-----------------TG---------------------T
GAACCTGGCCGGAAATGCTTGCTTGGTTCATCAGAAAT-TCAAATGTTGCAAGACATCCTGAATTAATTAAACCGTG--A
TGTTGATGCATGTAGTAACTCGGGAAGTGT---TAGTTGACTTTGTTTCAGTGTCCGTACAAGGCATCTAGCC-GCTGAC
TTTGATGAGCTCAAAGGAAAGACGGAGAGAGTAAGTAGTGTAGATCGTTCGTAATTGAGGTGTCAATCTGATCCGGTGGT
CAT-CCCCTCGTATACAATATACCAAATACATATACTACAATGAAACACCATTTCACAACGAATCTAACAATATTAATTT
GGCA----------------------------------------------------------------------------
--------------TTATGAATGTTGATACATTTCTCTATAGTTTGGTCAAAGTAAAGACAGTTTAACTTGGACAAAATT
TATATGCAAAAAGAACACGAGGGAGTACCTCCACGTTGATAAATAGATCAAAAATCTTTC----AAGAAAAAAAGCTAAA
ACAAGTGTTGACTTCATCAATTGGACGGCTAGCATTTTTTTTAGCAACCTCCGTTCTCAAACCACTACTGGCTAGTACTC
CCTCCGTTCCTAAATATTTGTCTTTCTAGAGATTTCAAATGATCACCACATACGGATGTATATAGACATATTTTAAAGTG
TAGATTCACTCATTTTGTTCCGTATGTAGTCATCATTTGAAACCTCTAGAAAGACAAATATTTAGGAACGGAGGGAGTAA
TAGTAAGTAACATTCAGTTGGACAAAACAAAAACTTATCGCCGCATCTGCATGACGCCAGAAAAAGAGTAGTA-------
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------------------------------------------------------------TAGCAAAGTTTTTGGTCACA
TGGGAAGCGCCAAAGGCACAGCTGATGGCCACGGACGGTCTAGGAGCTTCATTCAGGGTAGTTGCCAACTAACTTGGGAA
GAGAACTGCTACTGGCACCCTGATGTGCCGGGGAAAATGCACCAACGAACGAAT------TGGTGGCATGCATGCATGGC
CAACAGGTTGCAGCTCTGCCGCAACACTTGGCCAGCAGGCGGAG-GCACGATACATATCGCTAT------ATTGAGTGTT
CAAGAGTAACTCTAGATCAGTGCGATAACTATGGTGCAGCCCAGGGTAGAGTAGGCAGCACTT---------
>chr3D_1
TTATCA-TTTTTCCCTTTGGTAAGCCAATAAGTGTTTGCCAAATAAAATCCCAAAACTTA-TTTTGGCAGGTAAATCACA
TGCAGAAATTTATTTGGTAAACAATTATTTACATAATCATATTAATATGGGCAGGTAAATAATGGGCTAACATATTAGAA
TATTTATACCCTGTTGCAATGCATTGGCGATTATCTATTTAACTATCAGAATTTTGGAAACATAGCCATTGTTTAAGCGC
CCAGTGGTGATGGAGGCTGAGTAGAGGATGGTGCGAGCTGTAGTAGCTGTTTTTTTTCTTCTTCCGGAAAAACTTTCAAC
CTATTCATTATCTATCGTGGCTGTAAAAAATATATTAGAAGCAAC-CAAAATTACAT-CAGATCCGTAGAACACCTAGCG
ACGACTATAAGCACTGGAGGAGCATAT-----ACAAACTCAAAGTTCATCTAATCCAAATAGAGCCCAAAGCTGACATTG
CTTTCTGGCAGATTAAATAAGTAG----TATGATTTTTATGTCATTCTCGGATGAAGACTGAAGAGATTAGAGCAA----
----TCCGTAGCATATGCTGTACTTGACGGCTGGATATGCGTAAATCACCAATGCTGACCAGCTAGAGTATATTTTG--A
A-AAG-AAAAGGAAAAAACTTACTTTTGGGTGTACGTAGCAA-ACCACAATTGGTCCCTTTGACCTGTGGTGTCTGCACG
CGGCGGCTAGACGGTGTTGCATTGCACACAGACGTCGTTAATGACGTGGGCGCAAGTTTC---------CTCGTCCTGAC
GCGCATGGTAATACGCTCAAGTTTTGGCACAAAATCATTTTTTACTCAGAGCA---------------------------
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>chr3B_292
TTGT----------------------------------------------------------------------------
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----------------------------------------------------------TTCTGCTAGAAAAACTTTCAAT
CTATTCATCATCTGTCATGACAGTACAAAAAATATCAGAAGTAAC-AAAAATTACATACAGATACGTAGAACACTAGCC-
---ACTATAAGACCTG---GAGCTACCCGAACACAAACTCAAAGTTCATCTAATCCAAACAGAGCCCAAAGTTGACATGT
CTTTCAGGCAGATTAGATGAATAC----TATGATTTTTATGTGATTGTGGGATGAAGACTAAAGAGATGAGAGCAA----
----TCCGTAGCATATGCTGTGCTGGACTCCTGGATATGCACCAATCACCTATGCTGACAAGCTAGAGTATTTTTTT--A
ATG---------------TTTATGTTTGGGTGCATGTAGCAATATCGAGCTTGGGCACTTTGACCTGCGGTGTTTGCACG
CGGCGCCCAGACGGGGTTGCCCACACAC--GCCGTAGGTAATGACGTCGGCGCAAGTTAATTACTACTACTAGTCCTCGC
GCGCATGTTAATACGCTCTAGTTTTGGAATCAAATGA-TTT----------------------CGTGATAAGATCGATCC
ATCATC--------------------------CCTTCTATAAATAC---CTCCATCCAGATACATCTTCCCCACAAACCA
-----------AACAAGAACACACCGACCCACCATTGAG-------------AAGTAATCACTTCTGGTTGAGAAATCGG
AGGCAAGAGATAA----CTAGCCTAGCCATGTCTCCCTCTCCTGATCTGCCCTCCCGGATCCTCCCCCGCGTGCTCATCG
TCTCTCGCCGCACCGTCCGAAAGAACAAGTTCGTCGACTTTGTCGGTAAGTATTTCGTCTTGACTT---------TGGGG
AAATAA-TGGTGGATTCATTGGAAGAA----------------TGCTGACATTTGCATG-----CATGGATTGATGCAGG
AGAGTACCATCTGGACCTGGTGGTGGGCTACGGCGCGGTGCCGGTCATCGTGCCGCGGGTCACCGGCGTGCACGCTATGC
TCGACTCCTTCGAGCCCATCCACGGCGTGCTCCTCTGCGAGGGCGAGGACATCGACCCCTCCCTCTACGACGCCGGCGGC
GACGGCGACGCCAGG---GACGCGCTCTCGCAGGAGCAGCTCGAGGCCGTGAGGAGCCTCCACCCGAGCGACGCCGCCGT
GGACCATGAGAAGGACTCCATCGAGCTCCTCCTCGCGCGCCGCTGCCTCGAGCGCAACGTTCCGTTCCTCGGCATCTGCC
GCGGCTCGCAGGTGCTCAACGTCGCCTGCGGCGGCTCGCTCTACCAGGACGTCGAGCAGGAGCTCCACCCCGCG---GCG
GACGCGGCCGTCTGCCACATGAACTATGCCAACTACGACGGGCATCGGCACCCGGTGCGCGTGCTCCCCGGCACGCCGAT
GCACGACTGGTTCGCGGAGTCGCTGCTCGACGGCGACCAGCTGATGGTGAACAGCTACCACCACCAGGGCGTGCGGCGCC
TGGCGGACCGGTTCGTGCCCATGGCGCACGCGCCAGACGGGCTGGTCGAAGGGTTCTACGACCCCGACGCGTACGATCCC
GGCGAGGGCAAGTTCCTCATGGGGCTCCAGTTCCACCCGGAGCGCATGCGCAAGGAGGGCTCCGACGAGTTCGACTTCCC
CGGCTGCGCCAAGGCCTACCAAGAGTTCGTCCGCGCGGTGGCGGCACACCAGGCAAAGATGGCCGCCGCGCAC------G
TGTACGTCCGGAGCACGGTCACCACGCCGCCCAAACTGAACCAGGAAATGGACAAGCAGCGCAAGGTGATCGTCCGGAGC
GTCTCGCTCGCCAAGAACATGTACATGTTCGGCAAGAACACTGACGCGCAGCATCCGGCGGATCACCGGGACGGGGACCT
CGACGCCGGCGCGGAGTTCCTGGAGTCGAACAAGGCGCTGAGCGTGCAGCAGGAGAAGCGGCTGAAGCAGATGGGCGCGA
CGGTGCGGAACGCGTCGGGGTACATGAACAGGCTCAAGGTTAGCGAGGAGCGGGAGGCAGCGGCGCGGGCGCTCATGGCC
AAGATGTCGGTCGCCCAGCTCGCTAGCCTCGCCGCCTTCTACCGCGCCATGGGCAACGTCTGCTCGGAGGTGCTCGACGC
CAAGCTCCAGCCGCCGTCTCCAACCCTGCACGAGTGATC-----------------TACCTGTGCTCTGTCTGTCTCTGT
GAACCTGGCCGGAAATGCTTGCTCAGTTCATAAGAAATCC-AAATGTTGCATGGCATCCTGAATTAATTAAACCGTG--A
TGTTGATGTTACAC---ATTCAAGAAGTGT---TAGTTTACTTTGTTTGTGTGTCCATAC--------------------
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>chr3D_306
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--------------------------------------------------------------------AAAACTTCCAAT
CTATTCCTCATGTGCCATGATAGTGCAAAAAATATCAGAAGTAACGAAAAATTACATCCTGATACGTAAAACATCTAGCG
ACGATAATGACCACTG---GAGCGACCTGAACACAAACTCAAAGTTCATCTAATCCAAACAGAGCCCAAAGTTGACATGG
CTTTCCGCCAGATTAGATCAATAC-TAATATGATTTTTATGTGATTGTGGGAAGAAGACTGAAGAGATTAGAGCAA----
----TTCGTAGCATATGCTGTGCTGGACTGCTGGATATGCGTCAATCACCAATGCTAACAAGTTTTAGTAATTTTTTTAA
ATG---------------CTTATTTTTGGGTGCATGTAGCAATATCGAGCTTGG-CCCTTTGACCTGCGGTGTGTGCACG
CGGCGCCCAGACGGGGTTGCCCACCCAC--GTCGTAGGTAATGACGTCGGCACCAGTTAATTACTTCTAGTACCAAATGG
TA-----GTAATGCGCTCCAGTATTGGAACTAAATAATTTT----------------------CGTGATAAGATCGATCC
ATCAGCGCTGCCTCCATCCATCATCCTGATCGCCTTCTATAAATAC---CTGAATCCAGATGCATCTTCCCCACCCAAG-
------AAACTAACAAGAACACACCGACCTCCACACAAGTCCTTGTTCGGTTAA------------GGTTGAGAATTTGG
AGGCAAGAGG-AGGTAGGTAGCCTAGCCATGTCTCCCTCCCCTGATCT---------GATCCTCCCCCGCGTGCTCATCG
TCTCCCGCCGCACCGTCCGCAAGAACAAGTTCGTCGACTTCGTCGGTATGT--TTCGTCTTGACAAGTTTTGTCCTGTGC
AAATAT-TGGTGGATTCGTTGGAAGAA----------------TGTTAACCTTTGCATG-----CATGGATTGATGCAGG
GGAGTACCACCTGGACCTGGTGGTGAGCTACGGCGCGGTGCCGGTCATCGTGCCGCGGGTCGCCGGCGTGCACGCCATGC
TCGACTCCTTCGAGCCCATCCACGGCGTGCTCCTCTGCGAGGGAGAGGACATCAACCCCTCCCTCTACGGCGCCGGCGGC
GACGGCGACGGTGAAGGCTACGCGCTCTCGGCGGAGCAGCTCGAGGCCGTGCGGAGCCTCCACCCGAGCGACGCCGCCGT
GGACAACGAGAAGGACTCCATCGAGCTCCTCCTCGCGCGCCGGTGCCTCGAGCGCAACGTCCCGTTCCTCGGCATCTGCC
GCGGCTCGCAGGTGCTCAACGTCGCCTGCGGCGGCTCGCTCTACCAGGACGTCGAGCACGAGCTCCACCCCGCG---GCC
GACGCCGCCGTCTGCCACATGGACTACACCAACTACGACGGGCACCGGCACCCGGTGCGCGTGCTCCCCGGCACGCCGCT
GCACGACTGGTTCGCGGAGTCGTTGCTTGATGGGGACCAGGTGATGGTGAACAGCTATCATCACCAGGGCGTGCGGCGCC
TGGCCGACCGGTTCGTGCCGATGGCGCATGCGCCGGACGGGCTGATCGAAGGGTTCTACGACCCCGACGCGTACAACCCC
GGCGACGGCAAGTTCATCATGGGGCTCCAGTTCCACCCGGAGCGCATGCGCAAGGAGGGCACCGACGAGTTCGACTACCC
CGGCTGCGCCAAGGCCTACCAGGAGTTCGTCCGCGCGGTCGTGGCATACCAGGCGAAACTGGCCGCAGCGCAC------G
TGCACGGCCGGAGCGCGGTCACCACGTCGCCCAAACTGAACCGGGAAGTAGAGAAGCAGCGCAAGGTGATCGGCCGGAGC
TTCTCGCTCGCCAAGAACATGCACGCCTTCAGCGACAACACCGGCGCGCAGCATCCGGCGGAGCACCGGGACGGGGACCT
CGATGTCGGCGCGGAGTTCCTGGAGTCGAACACGGCGTTGAGCGTGCAGCAGGAGAAGCGGCTGAAGCAGATGGGCGCAA
CGGTGAGGAACGCGTCAGGGTACATGAACAGGCTCAAGGTGAGCGAGGAGCGGGAGGCGGCGGCGCGGGCGCTCATGGCC
AAGATGTCCGTCGCCCAGCTCGCCAGCCTCGCCGCCTTCTACCGCGCCATGGGCAACGTCTGCTCCGAGGTGCTCGACGC
CAAGCTCCAGCCGCC-----------------------------------------------------------------
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>chr3A_963
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------------------------------------------------------------------GGTTGAGAATTTCG
AGGCAAGAGGTAGGTAGCTACCCTAGCCATGTCTCCCTCCCCTGATATAAA---------CCTCCCCCGCGTGCTCATCG
TCTCCCGCCGCACCGTCCGCAAGAACAAGTTCGTCGACTTCGTCGGTGAGT--TTCTTGTT-CATCACTTCGTCCATGTT
GGGAAAGTGTTGGATTCGTTGGAACTTGGAAGAATGCTCCAATTGCTGACATTTGCATG-----CATGGATGGATGCAGG
GGAGTACCACCTGGACCTAGTGGTGGGCCACGGCGCGGTCCCGGTCATCGTGCCGCGGGTGGCCGGCGTGCACGCCATGC
TCGACTCCTTCGAGCCCATCCACGGCGTGCTCCTCTGCGAGGGCGAGGACATCGACCCCTCCCTCTACGACGCCCGCCGC
GACGGCGACGGTGAAGGCGACGCGCTCTCGCCGGAGCAGCTTGAGGCCGTGAGGCGCCTCCACCCGAGCGACGCCGCCGT
GGACCACGAGAAGGACTCCATCGAGCTCCTCCTCGCACGCCGCTGCCTCGAGCGCAACGTCCCGTTCCTCGGCATCTGCC
GCGGCTCGCAGGTGCTCAACGTCGCCTGCGGTGGCTCTCTCTACCAGGACGTGGAGCAAGAGCTCCACCCCCAGGA---C
GACGCAGCCGTGTGCCACATGGACTACGCCAACTACGACGGCCACCGGCACCCGGTGCGCGTGCTCCCCGGCACGCCGCT
GCACGACTGGTTCGCGGACTCGCTGCTCGACGGCGACCAGCTGATGGTGAACAGCTACCACCACCAGGGCGTGCGGCGCC
TGGCGGAGCGGTTCGTGCCCATGGCGCTTGCGCCGGACGGGCTGATCGAAGGATTCTACGACCCCGAAGCGTATCACCCC
GGCGAGGGCAAGTTCATCATGGGCCTCCAGTTCCACCCGGAGCGCATGCGCAAGGAGGGCTCCGACGAGTTCGACTTCCC
CGGCTGCGCCAAGGCCTACCAGGAGTTCGTCCGCGCGGTGGTGGCATACCAGGGGAAGCTGGCCGCCGCGCAA------G
TGCACCTCCGGAGCGCGGTCACCACGCCGCACAAACTGAACCAGGAAATGGAGAAGCAGCGCAAGGTGATCGTCCGGAGC
GTCTCGCTCGCCAAGAACACGTACGTGTTCGGCAACAACACCGGTGCGCGGCAGCCGGCGGAGCACCGCGACGGGGACCT
TGACGCCGGCGCGGAGTTCATTGAGTCGAACACGGCGCTGAGCGTGCAGCAGGAGAAGCGGCTGAAGCAGATGGGCGCGA
CGGTGCGGAACGCGTCCGGGTACATGAGCAGGCTCAAGGTGAGCGAGGAGCGGGAGGCGGCGGCGCGGGCGCTCATGGCC
AAGATGTTTGTCGCCCAGCTCGCCAGCCTCGCCGCCTTCTACCGCGCCATGGGCAACGTCTGCTCCGAGGTGCTCGACGC
CAAGCTCCAGCCGCCGTCTCCAACCCTGCACGAGTGACCCGTGCGTCCTCTGTCTATG---------------------T
GAACCTGGCCGGAAATGCTTGCTTGGTTCATCAGAAAT-CCAAATATTGCATGGCATCCTGAATTAATTAAACCGTG--A
TGTTGATGCATGTA---ACTCGACAAGTGT---TAGTTGACTTTGTTTCTGTGTCCGTACATGGCATCTAG-C-GCTGAC
TTTGATGAGATGAAATGAAAGACGAAGAGAGTAAGTAGTGTAGATCGTTCGTAATTGAGGTGTCATTCTTATCCCGTGGT
CAT-CCCCTCGTACGTACTCCTATCTAACTTGTGTACCACAGTTTCTTCATCGAATTAGCTTCATGAAGCGGA---AAAA
TATGAAGCTACTTTTCGACTGTGCAGGAGGGGCGATGTTGTTGGTGCACCTTCGGCTCGGCTTGCTCTAGTGTTTGTAGT
TGTTATTAGGTGGTTTACAAATGTAGATACAATA-TTTTTCTTCTGATGTTCTCTATGCTACCTTGACAA----------
-----------------------------------TTGATAAATAGATCGAATGTTTTCTTTAAAAGAAAAATAGCAAAT
----GTGTTGACTTCATCAGTTGGACGGCTAGCATTTTTT--AGCAAGTTCCGTTCTCAAACCACTACTACTGGCTAGT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AGTAACATTCTGTTGGACAAAACAAAAACTTATCGCCGCATCTGCATGACGCCAGAAACAATAATCCTACGCCTA
CGAAAGGACTATGTAGGGCTACGTAAACCTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCCTGCTCTCCCGGCGTGCGCCCATCCGTGCTCCCGCATACGTGGCATGGTTTGATT
GAAATCAAATAAAGCCCGGCCCCACCCCTTTAAAATCAGGGGAGGGAGGGAGATGATTATTTTTTAAGCTCAGGGGAAGA
TAATTAGATTAGAAAGAAAAAAAAGAAAAAGACAGCCGTAGGATGGAGTGTGTGCACGGATGGAAGCATGGGGAAGGAGC
ACGTAACAATTACGTAAGGCCCTTCGTAGGTGTAGCATTGCCCCGCCAGAAAAGGAGCAGTAGCAAAGTTTTTGGTCACA
TGGGAAGCGCCAAAGGCACACCTGATGGCCACGGACGGTCTAGGAGTTTCATTCAGGGTAGTTGCCAACTAACTTCGGAG
GAGAACTGGTAGTGGCACCCTGACGTGCCGTGGAAAATGCACGAACGAACGA------CATAGTGGCATGCATGCATGGC
CAACAGGTTGCCATTCTGCCGCAACACTCGGCCAGCAGGCGGAG-GCAAGATACATATCGCCACTTCGCCATTGAGTGTT
CAACAGTAACGCTAGATCTGAGCGATAACTGCGGTGCAGCCCAGGGTAGCGTAGGCAGCACTTGCACGGCGC
>SNPs
-----------------------S--------------------------------------------------------
---------------------S------------------------------------------S-S-------------
----------------------------S---------------------------S--------------------S--
----------S------------------S-------------S----S-------------S---------S-------
-------------------------------------------SS------------S----------S-----S-----
------------------S-----------------------------------S-------------------------
-S---------------------------S-S----------------------------------------SSS-SSSS
SSSS-------------------------------------------S-S------------------------------
-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S--------------------------------S------SSS--------------------------S----
----S-------------------------------------------------------------------------S-
-----------------------------------------S---------------------S----------------
-----------------------------------------------------------S--------------------
---------S--------------------------S-------------------------------------------
--------------------------------------------------------------------------------
-S--------------------S-----------S---------------------------------------------
---------SS------------------------------------------------------------------S--
---------------------------------S----------------------------------------------
----------------------------------------------S-----------------S---------------
--S---S--------------------------------------S------------------------S---------
---------------S---------S---S--------------------------------------------------
----------------S-----------------------------------------------------S---------
-----S--------------------------------------------------------------------------
------------------------------------S-----S------S------------------------------
-------------------------------S-S-S-------S------------------------------------
----------------------------------------S-S-----------------S-------------------
S----S--------------------------------------------------------------------------
----S-----S--------------------------------------------------S------------------
--------------------------------------------------------------------------------
-------------------S--------------------------------------SSS-S-----------------
-----------------------------------------------------------------------------SS-
----------------------S-------SSS------------------S---------------------S------
--S----------------------------------------------S------------S-----------------
---S----------------------------------------------------------S----S-----SSS----
----------------S----S---------------S------------SS--------------S--S----------
S---S---S---S------S--------------S---------S-------------------------SS--------
--------------------------------------------------SS----------------------------
---------------------------------------------------------S-------S--------------
--------------------------------------------------------------------------------
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--------------------------------------------------------S---S-------------------
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----------------------------------------------------------------------SS-S------
--------------------------------------S--------------------S--------------------
S-------------S----------------S-----S-------S-SSSS-S-SSS-----------S-----------
--------------------------------S--------S-SS--------S-----S---S----------------
------------S---------------------S---S---------------------------------
>forward_189
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---------CCTGTTGCAATGCATTGGCT---------------------------------------------------
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>reverse_1687
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------ACCGTCTGCCACATGGACTA------------------------------------------------------
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>forward_1383
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---ACTCCTTCGAGCCCATCCAT---------------------------------------------------------
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>reverse_4192
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-------------------------------AGAAAACGCACGAAGGTTGC-----------------------------
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------------------------------------------------------------------------
