>input_sequence_51658
--------------------------------------------------------------------------------
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--------------------------------------------------------------------ATGGATTCCTTT
TTCCAAAGAGCTTTCGGCGACCCAATGTGCTCGGAAGACAGTAATGTTGTCCAACAAGGAATTGATAAATGCCCATTCCT
GAGGAACATCAACGAGCCTACAAGTTTTTCCTTGACATCCATTAATTTCCCCACTCCGGTATGTCCTTACCATCCACCCC
TCTTTATCTGAATATATAAGTGTATGTATGTTATTTATTTGCTTGCTAAACTTTATCATTTTCTGCTCGTGAAGGCAACC
GGAGCAAAGGGTCCAATTTTTGAAGACGGGCCCAACTTTGACACGGCATTTCGAGTTTTCCACGGCAGAGACGGGGTTGT
TCCACTTTCAGAAGGAGCGTTTGCACATATTGAGAAGCCTCTGCCAAAGCCCGCTCCAGAATTTAACCCCTTGGCAGCCA
AAGCAGCTACCATCAGTCTCTCAGGATTCGGAGGCTTTTTCAGCTTCGGTGATTTCTCAAACAAGCGCAATAAGCAGAAC
TCCAACAAGAAGAATCCCAACAACCTCCCCCAGGTAATTATGGTTCCTCTTTTCCTCGTGCATTTGTTCTATCC------
-TTCAAATTATCATCCTT-GTGTTAGAAAGTTTCATTACC----------AGCCTTTAGACGAGACCAGTTTTTTAGTAC
CAAAAGAAAGCAAATCTATCTTTGATGCAAGCTTCACATGATATTTTTGAACTACCAGACATGGAGCT--TATTAAAACG
AGCAACGAATATAAGGTTATTCCTTAGAATTGGAGCATGCCATTCATTTACCTGATTTTGCTTTCCTTGTCATTTCAGAA
TAAAGGCCAGTCTAATAACAATCATGAAGCGATGAGCAATGACTGGCTGGAAAATGGTCAATGCCCTCTTGCAAAGTCAT
ATAGAGCAATTGGTGGAGTCGTGCCTCTTGTCGCAAAGCTGCTGGCGCCCCCAGCTGGTATGAAACTGACGTGCCCTCCT
GCAATTGTTGCTGCCCGTGCAGCAATATCCCGCACGGCGTTTGCAAAGGGGCTTCGCCCTCAGCCCCTACCGACAAAAGT
AGTGGTGATCGCACTGCTCGGTATGGCAGCCAATGTTCCTCTTGGCATCTGGAGGGAGCACACCACGAAGTTTTCAGTGC
AATGGTTTGCGGCGGTCCATGCTGCAGTGCCTTTCATAGGGATGCTGAGGAAGTCCATCCTGATGCCGAAGAGTGCCATG
GCCCTTACCATAGCTGCCTCAATATTGGGTCAGACAATTGGTTCAAGAGCTGAACGTATCAGATTGAAGAGGGCAAAATT
AGCAGCAGAGGGCCATGGCCATGAACATGCTACCCGGATTGAAGCTCCGGTGAGCCTGAAAACTGGGAGCTCAGGTGCTG
TCCAGCTCTGGGACCCGCTCGGCCTTAGGGTCAAAGGCGGCGTGTCTCCAACCCTGGTTCCGACTGTTGGTGCCATGTAT
TGA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------
>chr1A_1_TraesCS1A01G198500
ATTGCAATTCGCTGTCGGTTGGCCGAGTCACAACACAGGGTCAAACCTTCCGAACCCACCCCCGTTTCCCTGTCTACGCA
TCTGCTGATGG------GTGCCAACCACCGCACCCAACAACTACCCAACCAATCCCTCCCTCTCGGAGTCGCCTCCTACC
CCCTCCCCCTCCTCGTCTC---TCCTCATCTCACCTGTGCTCTCCACACGACCACACCAAAA-ATCCAGAGCCGCCCGCC
CGCCTCGCCTC-----CTCGTCTGCCTCCTCCTCTCCTGCGCTTCAGTTTCCAGGTTACTCTCTCTCCTCTCTCCCGCCT
CCTCTAC-CACTAGCTGCGTCGAATTCGATTTAGGGCGGGCGGACGGATTGGTTGATTGGTTGCTCTGCATGATTAGCAC
CCCCCTCGTCGAATTCGATTTGGGA-GGATGGGTGGCCGGGCCGGTCGATTCGTTGATTGCCCTGCGAGA--TTAAACAT
CTCACAGCGAGTGGGATCGAATTGCGATTCCGAGCAAATCTACCGTGATCCTTGCCCCTATCATTTCCCCTGATTCGGTG
CCCGGCTTCCAGCCGGCAATCATGGAATGAAATTAATTTTGCATCATTTCGTTTTTTTTTTTCATTCCAACCAAGAAGAT
GAAAG-AGCCGATACTGAT----TAGTAACAGGGGTGGTTGC-GGGTTGGTTGGCGGGTCTCTGTGTAGTGCGTGTTTTA
TTAGGTGATTAGTTCGATGACTCAATCACCATGGATTAACAAATTGTTTATGACTACTGTCAACCAATCCGACCATATGC
ACCCAGGGATGAAATTTAATCAGACTGTATTGAGTTAATCTGTCTATCCACAGCCTATCAATTCTGTCGGTGCTAAAGAA
GATAC--TTTTATTGATTTCATAAGTTCTGATCATGGCGCTCCCACCATAGGGTGACTGGCAGCTGCATCTCTTGCAGTT
CTGGCATATACCATCTCTTGACTCATATTACTCTCAC-CTCACAGGCTAGGTTGCTGCTGTTGTTCACATGGATTCCTTT
TTCCAAAGAGCTTTCGGCGACCCAATGTGCTCGGAAGACAGTAATGTTGTCCAACAAGGAATTGATAAATGCCCATTCCT
GAGGAACATCAACGAGCCTACAAGTTTTTCCTTGACATCCATTAATTTCCCCACTCCGGTATGTCCTTACCATCCACCCC
TCTTTATCTGAATATATAAGTGTATGTATGTTATTTATTTGCTTGCTAAACTTTATCATTTTCTGCTCGTGAAGGCAACC
GGAGCAAAGGGTCCAATTTTTGAAGACGGGCCCAACTTTGACACGGCATTTCGAGTTTTCCACGGCAGAGACGGGGTTGT
TCCACTTTCAGAAGGAGCGTTTGCACATATTGAGAAGCCTCTGCCAAAGCCCGCTCCAGAATTTAACCCCTTGGCAGCCA
AAGCAGCTACCATCAGTCTCTCAGGATTCGGAGGCTTTTTCAGCTTCGGTGATTTCTCAAACAAGCGCAATAAGCAGAAC
TCCAACAAGAAGAATCCCAACAACCTCCCCCAGGTAATTATGGTTCCTCTTTTCCTCGTGCATTTGTTCTATCC------
-TTCAAATTATCATCCTT-GTGTTAGAAAGTTTCATTACC----------AGCCTTTAGACGAGACCAGTTTTTTAGTAC
CAAAAGAAAGCAAATCTATCTTTGATGCAAGCTTCACATGATATTTTTGAACTACCAGACATGGAGCT--TATTAAAACG
AGCAACGAATATAAGGTTATTCCTTAGAATTGGAGCATGCCATTCATTTACCTGATTTTGCTTTCCTTGTCATTTCAGAA
TAAAGGCCAGTCTAATAACAATCATGAAGCGATGAGCAATGACTGGCTGGAAAATGGTCAATGCCCTCTTGCAAAGTCAT
ATAGAGCAATTGGTGGAGTCGTGCCTCTTGTCGCAAAGCTGCTGGCGCCCCCAGCTGGTATGAAACTGACGTGCCCTCCT
GCAATTGTTGCTGCCCGTGCAGCAATATCCCGCACGGCGTTTGCAAAGGGGCTTCGCCCTCAGCCCCTACCGACAAAAGT
AGTGGTGATCGCACTGCTCGGTATGGCAGCCAATGTTCCTCTTGGCATCTGGAGGGAGCACACCACGAAGTTTTCAGTGC
AATGGTTTGCGGCGGTCCATGCTGCAGTGCCTTTCATAGGGATGCTGAGGAAGTCCATCCTGATGCCGAAGAGTGCCATG
GCCCTTACCATAGCTGCCTCAATATTGGGTCAGACAATTGGTTCAAGAGCTGAACGTATCAGATTGAAGAGGGCAAAATT
AGCAGCAGAGGGCCATGGCCATGAACATGCTACCCGGATTGAAGCTCCGGTGAGCCTGAAAACTGGGAGCTCAGGTGCTG
TCCAGCTCTGGGACCCGCTCGGCCTTAGGGTCAAAGGCGGCGTGTCTCCAACCCTGGTTCCGACTGTTGGTGCCATGTAT
TGATGAGATGATCATGCTTCGTTGCGGCGGCTGTGATAATTGTATCAAGAGTTTCAGAAATTGTTTCTTGTACTCATTGT
TATTGTGTCTTGTAAAGGATTACTGGCTACATTGGATTCTTCTCCCCACATGAGT---TTGGGTGCAATCAATAAATTTC
ACCGTGTCCTTTGGTTTCTTCTTTGCAGCAAGGTTGGCTGATTAGACTATTTCTATGTTCCATATG-----CTTTCATTT
GCTTGGTCAAAAGCCAGAACACAACAGCTCCCAA-C--ATACCAAATGCAACAGCCAAT------TAGTAGTAAAACAAG
TGTTACAAAC---TTTTGACAAAAGCTCCAGCAGTTGCTTGCTGTGCAGAATA---------CATTCGACGAGGCTAGCT
GGTTAGACCAGTTTTAAGTTCCATGTGCTTTCATTTGCTTGGTCAAATGCCAAAACACAACAGCTACACCATCACACCAA
ATGCAACGGCAGATAAAGTCTACTGCTAAGGATTACATCATCTTTGTTTGACGAAAGCTCAAGCTAGCT-----------
-------------------------TTAGTATATCTCATCGTCTGGGACATGCGGCGTAAGGAACTTCTGAGGGTCCTTG
TACATTTCCTCGTAGTTGTACTTAGGCTTCACCCTCTCCGGAACCGGCTCAAGTGGCATGATGCTGTCTTCGTCGATCAC
GCTGTCGATGATCCCATAATCGACAGCCTCAAGAGGACCCATGTATCGGTCCCTATCGATGTCTTTCTCTACCTGCTCCA
GTGTGCGCCCCGTGAAGCCTGAAATCAGCCGGATGACATTCCTCTTGCTAGCCAGAATTTCCTTGGCTTGGACCTCTACA
TCCAAGGCCTGGCCACTCGCGCCTCCCACGGGCTGATGCATCATAATCCTGGTGTTGGGCATGGCGAATCGTTTGCCCTT
TGCGCCACCACCAAGGATTATAGAAGCTGTGGATCCAGCTATGCCCATTCCAATAGTGGATACATCTGCCCTCACCAGCT
GCATTACATCAAAGATAGCCATTGTCGC
>chr1B_1
ATTGCAATTCGCTGTCGTTTGGCCGGGTCACA------GGTCAAACCTTCCGAACCCACCCCCGTTTCCCTGTCTACGCA
TGTGCTGATGGGTGTGCGTGCCAACCACCGCACCCAACAACTACCCAACCAATCCCTCCCTCTCGGAGTAGCCTCCCACA
CCGCCCCCCTC---CTCGGCCATCCTCATCTCGCCTGTGCTCTCCACACGACCACACCAAAAAATCCAGACCTGCCCGCC
CGCCTCGCCTCGCCTCCTCGTCTG---CCTCCTCTCCTGCGCTTCAGTTTCCAGGTTACTCTCTCTCCTTCCTCCCGCCT
CCTCTCATCACTAGCT-CGCCGAATTCGATTTAGGACGGGCGGACGGATTGGTTGATTGGTTACTCTGCAAGATTAGCAT
CGCCCTCGTCCAATTCGATTTAGGACGGTGTGTGTCT--GGCCGGTCAATTCGTCGATCGTCCTGCGAGA--TGAACA--
-TCACAGCGAGTGGGATCGAATTGCGATTCCGAGCAAATCTACCGGGATCCTTGCCCCTATCATTTCCCCTGATTGGGTG
CCCGGCTTCCAGCCGGCAATCATGGAATGAAATTAATTTTGCACCATCTCGTA--TTTTTTTCATTCCAACCAAGAAGAT
GAAAG-AGCCGATACTAAT----TAGTAACAGTCGTGGTTGCTGGGTTGGTTGGTGGGTCTCTGTGTAGTGCATGTTTTT
ATAGATGAGTTGTTCGATGACTCAATCACCATGGATTAACAAATTGTTTATGACTACAGTCAACCAATCCGACCATATGC
ACCTAGGGATGAAATTTAATCAGACTGTATTGGGTTAATCTGTCTATCCACGACCTATCAATTGTGTCGGTGCTAAAGAA
GATTGAATTTAATCGATTTCATAAGTTCCGATCATGGACCTCC-ACCGCAGGACGATTGGCAGCTGCATCCCTTACAGTT
CTGGTATATACCATCTCCTGACTCATATTGCTTCCTCACTCACAGGCTAGGTTGCTGTTGTTGTTCACATGGATTCCTTT
TTCCAAAGAGCTTTCGGCGACCCAATGTGCTCGGAAGACAGTAATGTTGTCCAACAAGGAATTGATAAATGCCCATTCCT
GAGGAACATCAACGAGCCTACAAGTTTTTCCTTGACATCCATTAATTTCCCCGCTCCGGTATGTCCTTACCATCTACCCC
TCTTTATCTGAATATATAAGTGTATGTATGTTATTTATTTGCTTGCTAAACTGTATCATTTTCTGCTCGTGAAGGCAACC
GGAGCCAAGGGTCCAATTTTTGAAGACGGGCCCAACTTTGACACGGCGTTTCGAGTTTTCCATGGCAGAGACGGGGTTGT
TCCACTTTCAGAAGGAGCCTTTGCACATATTGAGAAGCCTCTGCCAAAGCCCACTCCTGAATTTAACCCCTTGGCAGCCA
AAGCAGCTACCATCAGTCTCTCGGGATTCGGAGGCTTTTTCAGCTTCGGTGATTTCTCAAACAAGCGCAATAAGCAGAAC
TCCAACAAGAAGAATCCCAACAACCTCCCCCAGGTAATTATGGTTTCTCTTTTCCTCGTGCATTTGTGTTAGAATGTTTA
GTTCAAATTACCATCCTTTGTGTTAGAATGTTTCGTTATCCTGTCGAACGAGCATTTAGATGAGACCAATTTTTTAGTAC
CAAAAGAAAGCAAATCTATCTTTGATGCAAGCTTCACATGATATTTTTGAACTGCCATATATGGAGCAAATATTAAAACA
AGCAACGAATATAAGGTTATTCCTTAGAACTGGAGCATGCCATTCATTTACCTGATTTTGCTTTCCCTTTCATTTCAGAA
TAAAGGCCAGTCTAATAACAATCATGAAGCGATGAGCAATGACTGGCTGGAAAATGGTCAATGCCCTCTTGCAAAGTCAT
ATAGAGCAATTGGTGGAGTCGTGCCTCTTGTCGCAAAGCTGCTGACACCCCCAGCTGGTATGAAACTGACGTGCCCTCCT
GCGATTGTTGCTGCCCGTGCAGCAATATCCCGCACGGCGTTTGCGAAGGGGCTTCGCCCTCAGCCCCTACCGACAAAAGT
AGTGGTGATCGCACTGCTCGGTATGGCAGCAAATGTTCCTCTTGGCATCTGGAGGGAGCACACTACAAAGTTTTCAGTGC
AGTGGTTTGCGGCGGTCCATGCTGCAGTGCCTTTCATAGGGATGCTGAGGAAGTCCATCCTGATGCCGAAGAGCGCCATG
GCCCTTACCATAGCTGCCTCGATATTGGGTCAGACAATTGGTTCAAGAGCTGAACGTATCAGATTGAAGAGGGCAAAATT
AGCAGCAGAGGGCCATGGCCATGAACATGCTACCCGGATTGAAGCTCCGGTGAACCTGAAAACTGGGAGCTCTGGTGCTG
TCCAGCTCTGGGACCCGCTTGGCCTCAGAGTCAAAGGCGCCGTGTCCCCAGCCCTGGTTCCGACTGTCGGTGCCATGTAT
TGATGAGATGATCGTGCTTCATTGCGGCGGTTGTGAGAATTGTATCA-GAGTTCCAGAAATTGTTTCTTGTATTCATTGT
TGTTGTGTCTTGTAAAGGATTACTGGCTACATTGGATTCTTCTCCCCACTATCATGAGTTGGGTGCAGTCAATAAATTTC
ACCATGTTCTTTGGTTTCCTCTTTGCAGCAAGGTTGGCTGATGAGCCTATTTCTATGTTCAGAACACAATTCTTTCATTT
GCTTGGTCAAAAGCCAGAACATAATAGCTCTCAATC--ATACCAAATGCAACGGCCAACAAAGTCTACTGCTAAAATTAG
TGCTACAACTTTGTTTTGACAAAAGCTCCAGCAGTTGCTTGCTGTGTAAAATAGTACTAGTACATGCGACGAGGCTAGCT
GGTTAGACCAGTTGTATGTTCCATGTGCTTTCATTTGCTTGGTCAAATGC-AAAACACAACAGCTACGCCATGACACCAA
ATGTAACGGCAGATAAAGTCTACTGCCAAGGATTACATCATCTTTGTTTGACGAAAGCTACAGCGACTGCCTGCTGTTTG
AAATACATGTGACTGACAGGCTAGCTTAGTATATCTCATCGTCTGGGACATGCGGCGTAAGGAACTTCTGAGGGTCCTTG
TACATTTCCTCGTAGTTGTACTTAGGCTTCACCCTCTCCGGAACCGGCTCAAGTGGGATAATGCTGTCTTCGTCGATCAC
ACCATCGATGATACCGTAATCAACAGCCTCAAGAGGACCCATGTATCGGTCCCTATCGATGTCTTTCTCTACCTGCTCCA
GTGTACGCCCCGTAAAGCCTGAGATCAGCCGGATGACATTCCTCTTGCTAGCCAGAATTTCCTTGGCTTGGACCTCCACA
TCCAAGGCCTGGCCACTCGCGCCTCCCACGGGCTGATGCATCATAATCCTGGTGTTGGGCATGGCGAATCGTTTGCCCTT
TGCGCCACCACCAAGGATTATAGAAGCTGTGGATCCAGCTATGCCCATTCCAATAGTGGATACATCTGCCCTCACCAGCT
GCATTACATCGAAGATAGCCATTGTCGC
>chr1D_1
ATTGCAATTCGCTGTCGCTGGGCCGGGTCACAGCACAGGGTCAAACCTTCCGAACCCACCCCCGTTTCCCTGTCTACGCA
TGTGCTGATGGGTGTGCCTGCCAACCACCGCACCCAACAACTACCCAACCAATCCCTCCCTCTCGGAGTTGCCTCCCACA
CCGTCCCCCTC---GTCTC---TCCTCATCTCGCCTGTGCTCTCCACACGACCACACCAAAA-ATCCAGACCTGCCCGCC
CGCCTCGCCTC-----CTCGTCTG---CCTCCTCTCCTGCGCTTCAGTTTCCAGGTTACTCTCTCTCCTCTCTCCCGCCT
CCTCTCATCACTAGCTGCGCCGAATTCGATTTAGGACGGACGGACGGATTGGTTGATTGGTTACTCTGCAAGGTTAGCAT
CGCCCTCGTTGAATTCGATTTAGGAAGGATGGGTGGCTGGGCCGGGCGATTCGTTGATCGCCCTGCGAAGATTGAACA--
-TCACGACGAGT-GGATCGAATTGCGATTCCGACCAAATCTGTTGTGATCCTTGCCCCTATCATTTCCCCTGATTT-GTG
CCCGGCTTCCAGCCGGCAATCATGGAATGAAATTAATTTTGCATCATTTCGTA-----TTTTCATTCCAACCAAGAAGAT
GAAAGGAGCAGATACTAATTACGTAGTAACAGGGGTGGTTGCTGGGTTGGTTGGTGGGTCTCTGCGTAGTGCTTGTTTTT
ATAGGTGAGTAGTTCGATGACTCAATCACCATGGATTAACAAATTGTTTATGACTGCGGTCAACCAATCCGACCATATGC
ACCTAGGGATGAAATTTAATCAGACTGTATTGAGTTAATCTGTCTATCGACAGCCTACAAATTCCGTCGGTGCTAAAGAA
GATTGAATTTTATCGCTTTCATAAGTTCTGATCATGGACCTCC-ACCACAGGCCGATTGGCAGCTGCATCTCTTACAGTT
CTGGTATATACCATCTCTTGACTCATATTGCTCTCACACTCACAGGCTAGGTTGCTGCTGTTGTTCACATGGATTCCTTT
TTCCAAAGAGCTTTCGGCGACCCAATGTGCTCGGAAGACAGTAATGTTGTCCAACAAGGAATTGAGAAATGCCCATTCCT
GAGGAACATCAACGAGCCTACGAGTTTTTCCTTGACATCCGTTAATTTTCCCGCTCCGGTATGTCCTTACCATCCACCCC
TCTTTATCTGAAT----AAGTGTATATATGTTATTTATTTGCTTGCTAAACTGCATCATTTTCTGCTCGTGAAGGCAACC
GGAGCCAAGGGTCCAATTTTTGAAGACGGGCCCAACTTTGACACGGCATTTCGAGTTTTCCACGGCAGAGACGGGGTTGT
TCCACTTTCAGAAGGAGCCTTTGCACATATTGAGAAGCCTCTGCCAAAGCCCACTCCTGAATTTAACCCCTTGGCAGCCA
AAGCAGCTACCATCAGTCTCTCGGGATTCGGAGGCTTTTTCAGCTTCGGTGATTTCTCAAACAAGCGCAATAAGCAGAAC
TCCAACAAGAAGAATCCCAACAACCTCCCCCAGGTAATT---------CTTTTCCTCGTGCATCTGTTCTATCC------
-TTCAAATTACCATCCTT-GTGTTAGAATGTTTCATTATCGTGTCGAACGAGCCTTTAGATGAGACCAATTTTGTAGTAC
C-AAAGAAAGCAAATCTATCTTTGATGCAAGCTTCACATGATATTTTTGAACTACCATATATGGAGCAAATATTGAAACA
AGCAACGAATATGAGGTTATTCCTTAGAACTGGAGCATGCCATTCATTTACCTGATTTTGCTTTCCCTGTCATTTCAGAA
TAAAGGCCAGTCTAATAACAATCATGAAGCGATGAGCAATGACTGGCTGGAAAATGGTCAATGCCCTCTTGCAAAGTCAT
ATAGAGCAATCGGTGGAGTCGTGCCTCTTGTCGCAAAGCTGCTGACACCCCCAGCTGGTATGAAACTGACGTGCCCTCCT
GCGATTGTTGCTGCCCGTGCAGCAATATCCCGCACGGCGTTTGCGAAGGGGCTTCGCCCTCAGCCCCTACCGACAAAAGT
AGTGGTGATCGCACTGCTCGGTATGGCAGCAAATGTTCCTCTTGGCATCTGGAGGGAGCACACTACGAAGTTTTCAGTGC
AATGGTTTGCGGCGGTCCATGCTGCAGTGCCTTTCATAGGGATGCTGAGGAAGTCCATCCTGATGCCGAAGAGCGCCATG
GCCCTTACCATAGCTGCCTCTATATTGGGTCAGACAATTGGTTCAAGAGCTGAACGTATCAGATTGAAGAGGGCAAAATT
AGCAGCAGAGGGCCATGGCCATGAACATGCTACCCGGATTGAAGCTCCGGTGACCCTGAAAACTGGGAGCTCAGGTGCTG
TCCAGCTCTGGGATCCGCTTGGCCTCAGAGTCAAAGGCGCCGTGTCCCCAGCCCTGGTTCCGACTGTTGGTGCCATGTAC
TGATGAGATGATCATGCTTCACTGCGGCGGCTGCGAGAATTGTATCAAGAGTTCCAGAAATTGTTTCTTGTATTCATTGT
TATTGTGTCTTGTAAAGGATTACTGGCTACATTGGATTCTTATCCCCACATGAGT---TTGGGTGCAATCAATAAATTTC
ACCATGTCCTTTGGTTTCTTCTTTGCAGCAAGGTTGGCTGGTTAGACTATTTCTATGTTCCATGTG-----CTTTCATTT
GCTTGGTCAAAAGCCAGAACACAACAGCTCCCAATCATATACCAAATGCAACGCCCAACAAAGTCTACTGCTAAAAAAAG
TGTTACGTCTTTGCTTTCACAAAAGCTCCAGCAGTCGCTTGCTGTGCAAAATA---------CAGGCCATGAGGCTA---
------------------------------------GCTTGGTCAAATGCCAGAACAAAACAGCTACGCCATCACACCAA
ATGCAACGGCAGATAAAGTCTACTGCTAAGGATTACATCAT--TTGTTCGATGAAAGCTCCAGCGACTGCCTGCTGTTCG
AAATACATGTGACTGGCAGGCTAGCTTAGTATATCTCATCGTCTGGGACATGCGGCGTAAGGAACTTCTGAGGGTCCTTG
TACATTTCCTCGTAGTTGTACTTAGGCTTCACCCTCTCCGGAACCGGCTCAAGTGGCATGATGCTGTCTTCGTCGATCAC
GCCGTCGATGATCCCGTAATCGACGGCCTCAAGAGGACCCATGTATCGGTCCCTATCGATGTCTTTCTCTACCTGCTCCA
GTGTGCGCCCCGTGAAGCCTGAAATCAGCCGGATGACATTCCTCTTGCTAGCCAGAATTTCCTTGGCTTGGACCTCTACA
TCCAAGGCCTGGCCACTCGCGCCTCCCACGGGCTGATGCATCATAATCCTGGTGTTGGGCATGGCAAATCGTTTGCCCTT
TGCGCCACCACCAAGGATTATAGAAGCTGTGGATCCAGCTATGCCCATTCCAATAGTGGATACATCTGCCCTCACCAGCT
GCATTACATCGAAGATAGCCATTGTCGC
>SNPs
-----------------S-------S------S-----------------------------------------------
-S-------------------------------------------------------------------S------S--S
--S--------SSS------------------S-------------------------------------S-S-------
------------------------SSS-----------------------------------------------------
-----SS------------S---------------S--------------------------S-------S--------S
-S-------------------S---------------S--------------------S--------------S--SSSS
S--------------------------------------------------------------------------S----
----------------------------------------------------SSS-------------------------
----------------S-------------------------------------S-----------------S------S
S-------S------------------------------------------------S----------------------
---S----------------------------------------------------------------------------
---SS--------S-----------------------SS----S----S---SS--S-----------------S-----
----S------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
----------------------------------------------------S---------------------------
-----S--------------------------------------------------------------------------
------------------S---------------------------------S----S----------------------
----------------------S---------------------------------------------------------
---------------------------------------------S----------------------------------
----------S-----------------S---------S---------------------S-------S-----------
---------------------------------------------------------S-S-------S-----------S
-----------------------------S------------------------------------S-------------
--------------------------------------------------------------------------------
--------------------------------------------S-S---------------------------------
--S-----------------------------------------S-----------------------------------
------------------------------S--------------------------------S----------------
-------------------------------------------------------------------------S------
--------------------S-----------------------------------------------------------
-----------------------------------------------------S--------------------------
-------------------S-----S--S----------S------S---S-----------------------------
--------------------S---------------S----------------S------------------S-------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
----------------------------------------------------S-----S--------S-SS-----S---
--------SS--------------------------------------S----------------S--------------
-------------S--S--------------------------------------------------S------------
------------------------------------------------------------S---S-SSS-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S------------S----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S-----------------
>forward_340
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TCCTCTACCACTAGCTGCGT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------
>reverse_1639
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CCAGCCTTTAGACGAGACCA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>forward_955
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------ACTGGCAGCTGCATCTCTTG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>reverse_2374
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GCCTGAAAACTGGGAGCTCA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>forward_2234
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------CCATCCTGATGCCGAAGAGT------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>reverse_3216
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---------------ATAATCGACAGCCTCAAGAGGAC------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------
