>input_sequence_51579
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------------------------------------------------------CTATATATACATAAATAGACATAAGC
AATGTATTCAACCACTCGACATGCTTCTCAAATGAGGCA-AAAAAATTATGCTTGATGTAACCAGCCATAAATTGAATGA
TTTGTG----ATAACTCCGTTTGTTCATACATTATAAAAATATGTCAGCATTTTATCTTATGATATATAGTAAATGCACG
AGTTTAGTTTATGGAAAGTTGGCCATAACTGATTCATAGAAATACATTTCCTTATGAATTAGTTTTTGGATGTATGTCAG
GTCTAAGGTGATATTTTGCAACTAACCCGTGCGAAGGTTCACGACGAGTTACAATAATCTTGCTAGATTGTTTCCACCTG
GTTATGCCGGCCACTTTGTGGC-TGGGTAGTTGACGCAAAAACAAAATTTAAACCGTGAACGGTTTTCCACCTTATAAAA
TAGCCAAGGCACACGTAGTTCTGTCTGGACTCTGGACCTCTGCTCCGCTATAAACCGCTCGTGATACCACGTCCAGTCAG
TCGTCCATCCATGCTCCAGAGCAACCCCTCGCTTCCATTCCGTCAAGCCCACCGAGCAGGGCCACCCATGGCCGCTCCCC
AAGAAGACGCGCCAGTGTCGGCCGAGCCGTCGTCCTGGGAAACCAGCAGCAGCCCGCCGCGGGCGCGGGCGCCGCGGCGG
CCGGACATGGGCACCGGGTGCGCCGCGCTGTGCTTCCACCTCCCGCGCCGCTCCAAGAAGAAGCAGCCCCCGCTGGCGAA
GCTGAGCTCCGGCGGCAAGAGCGTGGACGAGGCCGCCGT------CGACGCGTCCGCGTCCCAGCGCGTCACCTTCCTGG
CGTCGGCGTCGCTCTCCACGTGGTGGCCGTCGTCCCCGTCCGCGGCCGGCGCGCCGCCCGGCGGC---GGCGACGTGGCG
TGGAGGAGGTCGTCCTCGTCGGCGCGGGGCGGG---------GGCGCCGGCCGGAGGGCGCTGTCGTCGTCCTTCTCGTA
CTGGCGCCGGTCGCAGCACTCGTCGTCCCGCGTCATGCCGCA---CGGCGGCGCGG------CGTCCGCGCGCGTGTCCT
TCTCCTTCCCGTCGTCGCCCGTGTCCGTGTCCTCCTGCATGAGCACGCCCAAGATATCGCACGGGTGCGATCAGGAGTAG
GCCCGCACGTCCATCGGCATGA--------------TGTTCCGCGCCTGCGTTCTCTATCGG--------ATCGATCTCG
TACGCCGGTGCACGTA----------GTACGTAAATTGCTGCTGGTCTCTGGACAATTTC--ACGCTGATGTGCGTCATG
ATCGTGAGTGAGCTTAA-TTTCAATTGATTGTTATATGGAACTTGCATCATTATTTCGTGTTGTCTCTTATTGACGTATA
ATGTGCTGCCTAATCTTTTCTATCAGATCGATCTTTTGGTTGCAGTGGCTAGAACATGTATTTAGAAAGCCACACGTGAG
AGGAAGTGTTGACGTATAATGTACTGGCTAGTCTCTTCTA----------------------------------------
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>chr1D_1_TraesCS1D01G314500
GGATGCGTGAGCTCGAGAATGCAAGGCACCCTTTCTGCCTCTACCAGGTTGCCAAGTAGATTTGAACTATGGCTTCGCGC
TGGCATATATGGCTACAAAATTCTAAACCCACCAGGTTGGTCGTTCATGGCGAGTACTACTTCACTTTGGGAG-------
--GACAATCCACCAAGTAAGTACATGAAAGAAATTAAATCACTGTTATTGTTATCACCGGGAATATTTGTCAAGAGAGGA
ATAGCTGCGATATTATGGCGGCGATTAGAAGCGCCCTTGATCAATGGCGTCTAGCTGGCGTAAGTTGCTTAGAAAGATAG
TGAACACTCTTTACCAGCTGATGTTCCAAAACAATGAATTTACTGTCATTTAATATGTACGTAAACATGAAAGGAAAATT
GTCATCTGAGAGTATCAATATACTATCTACAATAAAAAAAAGTCTATACAATCTCCTTCACTACAGATTTTTTCCTTGAA
GTTCGACGTAAGCTCTCCGTAAGTTATGATGTTCTCCTTTTTGCACTTT---GTGTTGTTTATTCAAATATATATATTTT
TATCACCAATTAGTTTACATCGATTCACTCACTTGAGTAAGATGCATTCTTTAGCTACTTCTTTTGCTTTCAATTAACTG
GAACGATATCAAGTGCAAAGCATAATAGTATATGTTTGCGTTTTTCTAAAATGATTTATTAAAAAGAGTAGAAAAAAGTA
GGATTAGGGAAATAAATATTTTATTACACATAATATTTTAAAATATAATACTCAATATATATCACAA--AAATGATACTT
TGGATACTCACATGGCCTTCATGATGTAACATTAACCACTAATTTCTATTGTAATGTGTAATAAAATAATATTCATAATC
AAAGTTTTAGAAGTTCGATTGAAGGTAGGTGCAAAATGTTACTTATTATGATATGCATGGAGCATTTCATAAAAGACTAC
GACCGACTACTGTGTGAACATTTCTAGATAGTAACTCTGCATGAATGTTCAAATCTATATATACATAAATAGACATAAGC
AATGTATTCAACCACTCGACATGCTTCTCAAATGAGGCA-AAAAAATTATGCTTGATGTAACCAGCCATAAATTGAATGA
TTTGTG----ATAACTCCGTTTGTTCATACATTATAAAAATATGTCAGCATTTTATCTTATGATATATAGTAAATGCACG
AGTTTAGTTTATGGAAAGTTGGCCATAACTGATTCATAGAAATACATTTCCTTATGAATTAGTTTTTGGATGTATGTCAG
GTCTAAGGTGATATTTTGCAACTAACCCGTGCGAAGGTTCACGACGAGTTACAATAATCTTGCTAGATTGTTTCCACCTG
GTTATGCCGGCCACTTTGTGGC-TGGGTAGTTGACGCAAAAACAAAATTTAAACCGTGAACGGTTTTCCACCTTATAAAA
TAGCCAAGGCACACGTAGTTCTGTCTGGACTCTGGACCTCTGCTCCGCTATAAACCGCTCGTGATACCACGTCCAGTCAG
TCGTCCATCCATGCTCCAGAGCAACCCCTCGCTTCCATTCCGTCAAGCCCACCGAGCAGGGCCACCCATGGCCGCTCCCC
AAGAAGACGCGCCAGTGTCGGCCGAGCCGTCGTCCTGGGAAACCAGCAGCAGCCCGCCGCGGGCGCGGGCGCCGCGGCGG
CCGGACATGGGCACCGGGTGCGCCGCGCTGTGCTTCCACCTCCCGCGCCGCTCCAAGAAGAAGCAGCCCCCGCTGGCGAA
GCTGAGCTCCGGCGGCAAGAGCGTGGACGAGGCCGCCGT------CGACGCGTCCGCGTCCCAGCGCGTCACCTTCCTGG
CGTCGGCGTCGCTCTCCACGTGGTGGCCGTCGTCCCCGTCCGCGGCCGGCGCGCCGCCCGGCGGC---GGCGACGTGGCG
TGGAGGAGGTCGTCCTCGTCGGCGCGGGGCGGG---------GGCGCCGGCCGGAGGGCGCTGTCGTCGTCCTTCTCGTA
CTGGCGCCGGTCGCAGCACTCGTCGTCCCGCGTCATGCCGCA---CGGCGGCGCGG------CGTCCGCGCGCGTGTCCT
TCTCCTTCCCGTCGTCGCCCGTGTCCGTGTCCTCCTGCATGAGCACGCCCAAGATATCGCACGGGTGCGATCAGGAGTAG
GCCCGCACGTCCATCGGCATGA--------------TGTTCCGCGCCTGCGTTCTCTATCGG--------ATCGATCTCG
TACGCCGGTGCACGTA----------GTACGTAAATTGCTGCTGGTCTCTGGACAATTTC--ACGCTGATGTGCGTCATG
ATCGTGAGTGAGCTTAA-TTTCAATTGATTGTTATATGGAACTTGCATCATTATTTCGTGTTGTCTCTTATTGACGTATA
ATGTGCTGCCTAATCTTTTCTATCAGATCGATCTTTTGGTTGCAGTGGCTAGAACATGTATTTAGAAAGCCACACGTGAG
AGGAAGTGTTGACGTATAATGTACTGGCTAGTCTCTTCTATTAGATCGGTTTTTGGTTGCATTGACTAGAGCATGCATTT
CTACATCTCTGTCTACACTTCCTGAGAAGCGGTCGGGCCGTAGTTGGCGTCCGGACTAATCATCGTGGGGAGGTGTTAGA
TACTTCTTCTTTCTTAAGTATTTTCTTGACCTTGGACGCACGTACAAAGGTCGAATCCATCGACGTGATCTAGCAGCATC
ACGACCTGCGCCATACATTGTGGGTGTTGACGACGAAGATGAGCTGTCTAATCTATTCGGATGTAGTCGCTGGCTCGTCT
CCAGTATTCTGTTGTAAACAAGGACAGGAAAAAGATGTTCCGTTGCTAAAGAAAATTTATCCGGAGAACCGTACCGCGGT
CAGCCAGTTGCTCTCCAGAATGATCGGCGACCACGAAACGTACCCTCATCAAGTACAGTACACAGTTCATCTATATGGAA
TCCACCGACCACAGTACATAGCAGATAGCCCGTGCAAGGTGCAACGATCTAAGAGCAACTCCAAAGGGCCGACCCATTTT
GTCCGCCTGTGTCCGTTTGGGTCGGCGCGGACAAAAGTGGCGGCCCAACACGCCGACCCAAACCCAAATCACGTCCGCGT
CGCGTCCGTGCCGACGCATTTGCAGCCCAAATTTGCGTCCCAAATGTGTCGGCGCGGACGCCGAACGGACGCTTCGCGCG
CCTTCTCGCTATCCGCCGTGTCCCCACATGGTGACCGTCCAACTACCCGCTGCCCACGCGGTCAGCTTAATTTATGACGA
CGGGTCCACGCGTCAGCGACGGCGCTCGTCCTTTTTTAAGCCGACCGTGCGGCGGGGCCGTCCTCATCCAAACTCGTCGT
CCACATCTGCCCATCTTTGCTCCCTCGTCGCCGGCAAACCCTAGCCACCACAACCACAGCGAAATGGGTCTCTTCTCCGG
CGCCAGCGGCAGCAAGGCCAAGGGCAAGTCCCCCGCCACCCCTTTCCCCTCAGAGTTCCTCCCACCTCCGCCGGCGCCTC
>chr3A_1
GGATGCATGAGCTCGAGAATGCAAGGCACCCTTTCTGCCTCTACCAGGTTGCCAAGTAGATTTGAACTATGGCTTCGCGC
TGGCATATATGGCTACAAAATTCTAAACCCACCAGGTTGGTCGTACATGGCGAGTACTACTTCACTTTGGGAG-------
--GACAATCCACCAAGTAAGTACATGAAAGAAATTAAATCACTATTATTGTTATCACCGGGAATATTTGTCAAGAGAGGA
ATAGCTGCGATATTATGGCAGCGATTAGAAGCGCCCTTGATCAATGGCGTCTAGCTGGCGTAAGTTGCTTAGAAAGATAG
TGAACACTCTTTACCAGCTAATGTTCCAAAACAATGAATTTACTATCATTTAATATGTATGTAAACATGAAAGGAAAATT
GTCATCTGAGAGTGTCAATATACTATCTACAATAAAAAAAGTC---TACAATCTCCTTCACTACAGATTTTTGCCTTGAA
GTTCGACGTAAGCTCTCCGTAAGTTATGATGTTCTCCTTTTTGCACTTT---GTGTTGTTTATTCAAATATATATATTTT
TATCACCAATTAGTTTACATCGATTCACTCACTTGAGTAAGATGCATTCTTTACCTACTTCTTTTGCTTTCAATTAACTG
GAACGATATCAAGTGCAAATCATAATAGTATATGTTTGCATTTTTCTAAAATGATTTATTAAAAAGAGTAGAAAAAAGTA
GGATTAGGGAAATAAATATTTTATTACACATAATATTT---AATATAATACTCAATATATATCACAA--AAATGATACTT
TGGATACTCACATGGCCTTCATGATGTAACATTAACCACTAATTTCTATTGTAATGTGTAATAAAATAATATCCGAAGTC
AAAGTTTTAGAAGTTCGATTGAAGGTAGGTGCAAAATGTTACTTATTATGATATGCATGGAGCATTTCATAAAAGACTAC
GACCGACTACTGTGTGAACATTTCTAGATAGTAACACTGCATGAATGTTCAAATCTATATATACATAAATAGACATAAGC
AATGTATTCAACCACTCGACATGCTTCTCAAATGAGGC--AAAAAATTATGCTTGATGTAACCAGCCATAAATTGAATGA
TTTGTGATTTATAACTCCATTTCTTCATACATTATAAAAATATGTCAGCATTTTATCTTATGATATATAGTAAATGCACG
AGTTTAGTTTATAGAAAGTTGGCCATAACTGATTCATAGAAATACATTTCCTTACGAATTAGTTTTTGGATGTATGTCAG
GTCTAAGGTGATATTTTGCAACTAGCCCGTGCG-----------------------------------------------
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>chr3D_3
--ATGCTTGAGCTCGAGACTTCAAGGCACCCATTCTGCCTCTGCCAGGTTGCCAAGTAGATTTGGACCAAGGCTTCACAC
TGGCATATATGGGTACAACACTCTGAACCCAGTAGGTTGGTCATCCATGGTGAGCACTACTTCCGCTTGGAAGAAGATGA
TTGAAAATCAGCCAAGTAAGTACATGAAAGAAATGAAATTATTCTTATTTTTATCACGTGGAAGATTTGGCAAGAGAGGA
ATTGTC-----ATTTTGGCGGTGATTAGAACCGGCCTTCATCAATGACGTCTGGCTGGCGCAAGTTGCTTAGAAAGATAG
TGAACACTCTTTACCAATTGTTGTTCCAACACAATGAAAATACCGCCATGTAATATCTATGTAAACATGAAATCAAAATT
GTCATATAAGCATATCAATAT----------------------------AATCTGCTTCATTGCAGGTTTTTGCCATGAA
GTTTGGCGTAGGCTCTCTATAAGTTGTGCTTTTTTGCACTTTGTTATGTTGGGTGTTGTTTATTCAAATTTATTTGTTGT
AT---------------CATCGATTCACTCACTTGAGTAGGATGCATTCTTTAGCTACTTCTTTTCCTCTTAATTAATTG
GAACGATATCAAGTGTAAAACATGATATTATATGTTTG------------------------------------------
-----------------------------------------AATATAATACTCACTCCATATCACGAATAAGTGATGTTT
TGGCCACTCACATGGCCTTCACAATGTAACATTAACCACTAATTTCTATTGTAATGTGTATATGAAAA------------
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>chr6D_795
CACAT---------------------------------------------------------------------------
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---------------CCTTCATGATGTAACATTAACCACTAATTTATATTGTAATGTGTAATAAAATAATATTCATAGTC
AAAGTTTTAGAAGTTCGATTGAAGGTAGGTGCAAAATGTTACTTATTATGATATGCATGGAGCATTTCATAAAAGACTAC
GACCGACTACTTTGTGAACATTTCTAGATAGTAACTCTGCATGAATGTTCAAATCTATATATACATAAATAGACATAAGC
AATGTATTCAACCACTCGACATGCTTCTCAAATGAGGCAAAAAAAATTATCCTCGATGTAACCAGCCATAAATTGAATGA
TTTGTGATTTATAACTCCGTTTGTTCATACATTATAAAAATATGTCAGCATTTTATCTTATGATATATAGTAAATGCATG
AGTTTAGTTTATGGAAAGTTGGCCATAACTGATTCATAGAAATACATTTCCTTACGAATTAGTTTTTGGATGTATGTTAG
GTCTAAGGTGATATTTTGCAACTAGCCCGTGCGAA---------------------------------------------
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>chr1A_1310
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------------------------------------------------TTACAATAATCTTGCTAGATTGTTTCCTCCTG
GTTATGCCGGCCACTTTGTGGC-TGTGTAGTTGACGCAAATGCAAATTATAAACCGTGAACGGTTTTCCGCCT--TAAAA
TAGCCAAGGCACACGTAGTTCTGTCTGGACTCTGGACCTCCGTCCCGCTATAAACCGCTGGTGATACCACGTCCAGTCAG
TCGTCCGCCCATGCTCCAGAGCAACCCCTCGCTCCCATTCCGTCGAGCCCACCGAGCAACGCCACCCATGGCCGCTCCAC
AAGAAGACGCGCCGGTGTCGGCCGAGCCGTCGTCACGGGAAACCAGCAGCAGCCCGCCGCGGGCGCGGGCGCCGCGCCGG
CCGGACATGGGCAGCGGATGCGCCGCGCTGTGCTTCCACCTCCCACGCCGCTCCAAGAAGAAGCAGCCCCCGCTGGCGAA
GCTGAGCTC---CGGCAAGAGCGTGGACGAGGCCGCCGCCGCCGCCGACGCGTCCGCGTCCCAGCGCGTCACCTTCCTGG
CGTCGGCGTCGCTCTCCACGTGGTGGCCGTCGTCCCCGACCGCGTCCGGCTCGCCACCCGGCAGCGGAG---ACGTGGCG
TGGAGGAGGTCTTCCTCGTCGGCGCGGGGCGGGAGCGGCGGCGGCGCCGGGAGGAGGGCGCTGTCGTCGTCCTTCTCGTA
CTGGCGCCGGTCGCAGCACTTGTCGTCCCGCGTCATGCCGCACGGCGGCGGCGCGG------CGTCCGCGCGCGTGTCCT
TCTCCTTCCCGTCGTCGCCCGTGTCCGTGTCCTCCTGCATGAGCACGCCCAAGATATCGCACGGGTGCGATCAGGAGTAG
GCGGCACGCACG-----CACGAACTCAACGATCCGTTGAGACTCC------GTTCCGTTCTGCATCGTACATCGATCTTG
TACGCCGGTGTACTACCGTGTTGTACGTACGTAAA---CTGCTGATCTCTGGATAGTTTCATACGCTGGTGTGCGTCATG
ATCGTGCGTGAGCTTGA-TTTTGATTGATCATTT--TGGAACTTGCGTCATTATTTCGTG--------------------
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>chr1B_1310
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------------------------------------------------TTACAATAGTCTTGCTAGATTGTTTCCACCTG
GTTATGCCGGCCACTTTGTGGGTTGGGTAGTTGAAGCAAAAACAAATTATAAACCGTGAACGGTTTTCTGCCT--TAAAA
TAGCCAAGGCACACGTAGTTCTGTCTGGACTCTGGACCTCTGCTCCGCTATAAACCGCTCGTGATACCATGTCCAGTCAG
TCGTCCGTCCATGCTCCAGAGCAGTCCCTCGCTTCCATTCCGTCGAGCCCACCGAGCAACGCCACCCATGGCCGCTCCCC
AGGAAGACGCGCCGGTGTCGGCCGAGCCGTCGTCCCGGGAAACCAGCAGCAGCCCGCCGCGGGTGCGGCCGCCGCGGTGG
CCGGACATGGGCAGCGGGTGCGCGTCGCTGTGCTTCCACCTCCCGCGCCGCTCCAAGAAGAAGCAGCCCCCGCTGGCGAA
GCTGAGCTC---CGGCAAGAGCGTGGACGAGGCCGCCGCCGCCGCCGACGCGTCCGCGTCCCAGCGCGTCACCTTCTTGG
CGTCGGCGTCGCTCTCCACGTGGTGGCCGTCGTCCCCCTCCGCGGCCGGCGCGCCACCCGGCGGC---G---ACGTGGCT
TGGAGGAGGTCGTCCTCGTCGGCGCGGGGCGG---CGGCGGAGGCGCCGGGCGGAGGGCGCTGTCGTCGTCCTTCTCGTA
CTGGCGCCGGTCGCAGCACTCGTCGTCCCGCGTCATGCCGCA---CGGCGGCGGCGCCGCCACGTCCGCGCGCGTGTCCT
TCTCCTTCCCGTCGTCGCCGGTGTCCGTGTCCTCCTGCATGAGCACGCCCAAGATATCGCACGGGTGCGATCAGGAGTAG
GCGGCACGCACGGCACGCACGAACTCGACGATCCGTTGATCGCCTGTTGAGGTTCCGTTCTG--------TGTGATCGTG
TACGG------------------------CGTACA---TTGCTGATCTCTGGATAATTTCATATGCTGCTGTGCGTCATG
ATCGTGGGTGAGCTTAATTTTTGATTGATCATTT--TGGAACTTGCATCACTATTTCGT---------------------
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>chr6D_2924
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---------------------------------------------GATCTAAGAGCAACTCCAAAGGGCCGACCCATTTC
ATCCGCCTGCGTCCGTTTGGGTCGGCGCGGACAAAAGTGGCGGCCCTACGCGCCGACCCAAACCCAAATCACGTCCGCGT
CGCGTCCGCGCCGACGCATTTGTGGCCTAAATTTGCGTCCCAAATGCGTCGGCGCGGACGCCGAACGGACGCTTCGTGCG
CCTTCTCGCTATCCGCCGCGTCCTCACATGGCAGCCGTCCAACTATCCGCTGCCCACGCGGTCAGCTTAATTTATAACGA
CGGGCCCACGCGTCAGTGACGGCGCTCGTCCTTTTTTAAGCCGACCGTGCGGCGGGGCCGTCCTCATCCAAACTCGCCGT
CCACATCTGCCCACCTTTGCTCCCTCCTCGCCGGCAAACCCTAGCCACCACAACCACAGCGAGATGGGCCTCTTCTCCGG
CGCCAGCGGCAGCAAGGCCAAGGGCAAGTCCCCCGCCACCCCTTTCCCCTCAAAGTTCCTCCCACCTCCGCCGGCGCCTC
>chr7D_2924
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---------------------------------------------GATCTAAGAGCAACTCCAAAGGGCCGACCCATTTC
GTCCGCCTGCGTCCGTTTGGGTCGGCGCGGACAAAAGTGGCGGCCCAAGGCGCCGACCCAAACCCAAATCACGTCCGCGT
CGCGTCCGCGCCGACGCATTTGCGGCCCAAATTTGCACCCCAAATGCGTCGGCGCGGACGCCGAACGGACGCTTCGCGCG
CCTTCTCGCTATCCGCCGGGTCCCCACATGGCGGCCGTCCAACTACCCGCTGCCCACGCGGTCAGCTTAATTTATGACAA
CGGGCCCACGCGTCAGCGACGGCGCTCGTCCTTTTTTAAGCCGACCGTGCGGCGGGGCCGTCCTCATCCAAACTCGCCGT
CCACATCTGCCATCCTTTGCTCCCTCGTCGCCGGCAAACCCTAGCCACCACAATCACATCGAGATGGGCCTCTTCTTTGG
CGCCAGCGGCAGCAAGGCCCAGGGCAAGTCCCCCGCCACCCCTTTCCCCTCATAGTTCCTCCCACCTCCGCCGGCGCC--
>chr2D_2925
ATA-----------------------------------------------------------------------------
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-------------------------------------------------TAAGAGCAACTCCAAAGGGCCGACCCATTTC
GTCCGCCTG--TCCGTTTGGGTCGGCGCGGACAAAAGTGGCGGCCCAACGCGCCGACCCAAACCCAAATCACGTCCGCGG
CGCGTCCGCGCCGACGCATTTGCGGCCCAAATTTGCGCCCCAAATGCGTCTGCGCGGACGCCAAACGGACGCTTCGCGCG
CCTTCTCGCTATCCGCCGAGTCCCCACATGGCGGCCGTCCAACTACCCGCTGCCCACGCGGTCAGCTTAATTTATGACGA
CGGGCCCACACGTCAGCGACGACGCTCGTCCTTTTTTAAGCCGACCGTGCGACGGGGCCGTCCTCATCCAAACTCGCCGT
CCACATCTGCCGTCATTTGCTCCCTCGTCGCCGGCAAACCCTAGCCACCACAACCACAGCGAGATGGGCCTCTTCTCCGG
CGCCAGCGGCAGCAAGGCCAAGGGCAAGTCCCCCGCCACCCCTTTCCCCTCAGAGTTCCTCCCACCTCCGCCGACGCCTC
>chr1D_2926
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-----------------------------------------------TCTAAGAGCAACTCCAAAGAGCCGACCCATTTC
GTCCGTCTGCGTCTGTTTGGGTCGGCGCGGACAAAAGTGGCGGCCCAACGCGTCGACCCAAACCCAAATCACATTCACGT
CGCGTCCGCGCCGACGCATTTGCGGCCCAAATTTGCGCCCCAAATGCGTCGGCGCGGACGCCGAACGGACGCTTCGCGCG
CCTTCTCGCTATCCGCCGCGTCCCCACATGGCGGCCGTCCAACTACCCACTGCCCACGCGGTCAGCTTAATTTATGATGA
CGGGTCCATGCGTCAGCGACAGCGCTCGTCCTTTTTTAAGCCGACCGTGCGACGGGGCCGTCCTCATCCAAACTCGCCGT
CCACATCTGCCCACCTTTGCTCCCTCGTCGCCGGCAAACCCTAGCCACCACAACCACAGCGAGATGGGCCTCTTCTCCGG
CGCCAGCGGCAGCAAGGCCAAGGGCAAGTCCCCCGCCACCCCTTTCCTCTCAGAGTTCCTCCCACCTCCGCCGGCGCCTC
>chr3D_2926
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-----------------------------------------------TCTGAGAGCAACTCCAAAGGGCCGATCCATTTC
GTCCGCCTGCGTCCGTTTGGGTCAGCGCGGACAACAGTGGCGGCCCAACGCGCCGACCCAAACCCAAATCACGTCTGCGT
CGCGTCCGCGCCGACGCATTTGCGGCCCAAATTTGCGCCCCAAATGCGTCGGCGCGGACGCCGAACGGACGCTTCGCGCG
CCTTCTCGCTATCCGCCGCGTCCCCACATGGCGGCCGTCCAACTACCCGCTGCCCACGCGGTCAGCTTAATTTATGACGA
CGGGCCCACGTGTCAGCGACGACGCTCGTCCTTTTTTAAGCCGACCGTGCGGCGGGGCCGTCCTCATCCAAACTCGCCGT
CCACATCAGCCCATCTTTGCTCCCTCATCGCCGGCAAACCCTAGCCACCACAACCACAGCTAGATGGGCCTCTTCTCCGG
CGTCAGCGGCAGCAAGGCCAAGGGCAAGTCCCCCGCCACCCCTTTCCCCTCAGAGTTCCTCCCACCTCCGCCGGCGCCTC
>chr5D_2927
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------------------------------------------------CTAAGAGCAACTCCAAAGGGCCGACCCATTTC
GTCCGCCTGCGTCCGTTTGGGTCGGCGCGGACAAAAGTGGCGGCCCAACGCGCCGACCCAAACCCAAATCACGTCCGCGT
CGCGTCCGCGCCGATGCATTTGCGGCCCAAATTTGCGCCCCAAGTGCGTCGGCGCGGACGCCGAACGGACGCTTCGCACG
CCTTCTCGCTATCCGCTGCGTCCCCACATGGTGGCCGTCCAACTACCCGCTGCCCACGCGGTCAGCTTAATTTATGACGA
-GGGCCCACGCGTGAGCGACGGCGCTCGTCCTTTTTTAAGCCGACCGTGCGGCGGGGCCGTCCTCATCCAAACTCGCCGT
CCACATCTGCCATCCTTTGCTCCCTCGTCGCCGGCAAACCCTAACCACCACAACCACAGCGAGATGGGCCTCTTCTCCGG
CGCCCGCGGCAGCAAGGCCAAGGGCAAGTCCCCCGCCATCCCTTTCCCCTCAGAGTTCCTCCCACCTCCGCCGGCG----
>chr7D_2928
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-------------------------------------------------TAAGAGCTACTCCAAAGGGCCGACCCATTTC
GTCCGCCTGCGTCCGTTTGGGTCGGCGCGGACAAAAGTGGCGGCCCAACGCGCCGACCCAAACCCAAATCACGTCCGCGT
CACGTCCGCGCCGACGCATTTGCGGCCCAAATTTGCGCCCCAAATGCGTCAGCGCGGACGCCGAACGGATGCTTCGCGCG
CCTTCTCGCTATCCGCCGCGTCCCCACATGGCAGCCGTCCAACTACCCGCTGCCCACGCGGTCAGCTTAATTTATGACGA
CGGGCCCACGCGTCAGCGACGACGCTCGTCCTTTTTTAAGCCAACCGTGCGGCGGGGCCGTCCTCATCCAAACTCGCCGT
CCATATCTGCTCACCTTTGCTCCCTCGTCGCCGGCAAACCCTAGCCACCACAACAACAGCGAGATGGGCCTCTTCTCCGG
TGCCAGCGGCAGCAAGGCCAAGGGCAAGTCCCCCGCCACCCCTTTCCCCTCAGAGTTCCTCCCACCTCCGCCGGCGCCTC
>chr7D_2928
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-------------------------------------------------TAAGAGCAACTCCAAAGGGCCGACCCATTTC
GTCCGCCTGCGTCCGTTTGGGTCGGCGTGGACAAAAGTGCCGGCCCAACGTGCCGACCCAAACCCAAATCACGTCCGCGT
CGCGTTCGCGCCGACGCATTTGCGGCCCAAATTTGCGCCCCAAATGCGTCGGCGCGGACGCTGAACGGACGCTTCGCGCG
CCTTCTCGCTATACGCCGCGTCCCCACATGGCGGCCGTCCAACTACCCGCTGCCCACGCGGTCAGCTTAATTTATGACGA
CGGGCCCACGCGTCAGCGACGGCGCTCGTCCTTTTTTAAGCCGACCGTGCGGCGGGGCCCTCCTCATCCAAACTCGCCGT
CCACATCTGCCAACCTCTGCTCCCTCGTCGCCAGCAAACCCTAGCCACCACAACCACAGCGAGATGGGCCTCTTCTCCGG
CGCCAGCGGCAGCAAGGCCAAGGGCAAGTCCCCCGCCACCCCTTTCCCCTCAGAGTTCCTCCCGCCTCCGCTGACGCC--
>chr2D_2928
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-------------------------------------------------TAAGAGCAACTCCAAAGGGCCGACCCATTTC
GTCCGCCTGCATCTGTTTGGATCGGTGCGGACAAAAGTGGCGGTCCAACGCGTTGACCCAAACCCAAATCACGTCCGCGT
CGCGTCCTCGCCGACGCATTTCCGGCCCAAATTTGCGCCCCAAATGCGTCGGCGCGGACGCCGAACGGACGCTTCGCGCG
CCTTCTCGCTATCCGCCGCGTCCCCACATGGCGGCCGTCCAACTACCCGCTGCCCACGCGGTCAACTTAATTTATGACGA
CGGGCCCACGCGTCAGCGACGGCGCTCGTCCTTTTTTAAGCCGACCGTGCGGCGGGGCCGTCCTCATCCAAACTCGCCGT
CCACATCTGCCCACCTTTGCTCCCTCGTCGCCGGCAAACCATAACCACCACAACCACAACGAGATGGGCCTCTTCTCCGG
CGCCAGCGGCAGCAAGGCCAAGGGCAAGTCCCCCGCCACCCCTTTCCCCTTAGAGTTCCTCCCACCTCCGCCGGCGCCTC
>SNPs
------S-------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
-------------------------------------------S------------------------------------
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-----------------------------------------------------------S--------------------
----------------------------------------SSSSSS--------------------------S-------
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-------------------S-------------------S----------------------------------------
--------------------------------------SSS---------------------------------------
-----------------------------------------------------------------------------S--
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------------------------------------------------------S-------------------------
------------------------S----------SSSSSSSSSSSSS--------------------------------
----------------------------------------------S-S--------------------S---SS-----
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------S-------------------------------------S-------------SS--------------------
-------------S---------------------S--------------------------------------------
-------------S------------------------------------------------------------------
---------SSS--------------------------S-----------------------------------------
-------------------------------------------------------S-------------SSS--------
--------------------------------------------------S-----------------------------
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--SSSSSSSS-SSSSS---S------------------S---S-SSS--S-S-SS-SS--S-----------------S-
----------S--SSS-------------------SSS------S--------S--------------S-----------
------S--------------SS------SS--SSS------------------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------S
---------S---------------------------------------S------------------------------
--------S--------------S----------------------S---------------------------------
------------------S--------------S----------------------------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------S-----S-----------
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>forward_660
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----------------------------------------------------------------------------ACTG
GAACGATATCAAGTGCAAAG------------------------------------------------------------
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>reverse_2607
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----------------------------------------------GCGTCCGGACTAATCATCGT--------------
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