>input_sequence_51442
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--------------------------------------------ATGAAGGTGCAATCTTTGCTTTTCCTTCAACATTCT
CACCCAGCAAAAGTTGAGAGGAAGAGATGCCGCGTCACAGTTGGTTCCTGTATGATGTTGCGGGAATCTGCTGCAAGTAA
GAAA-ATATTTCCTTCTACTTCTTCATTTTTCAGATGCATGACGCATGTACACACACTGCGGCGCCGGTGCGCGCAGCGA
AGGATATAGATTCTAGGATAGAGATAAGCTTGTCCTTTGCATATCTGCCTTGATAGTTGTCACCTGGAATGAAAATGGGA
ATAATCACAATGAGAGAGAAAAAGGCATAGTGCTCTGTAGAGCAATCTCCAGACTCCAGAGCTCAAGAATTTTGCGATTC
TTCGTCACTTCTTTGGCTCCTCGCCTTCCCAAGGGGTATTCTTGCTTGGCCCCTGCAAGTAGAATGCACAACTAGCTCTT
CAGATCAAATCTTTGCTGCGACTACCCGCCATGATATTCTGAATCTACTAATTCCTCAACTCGGATCTTAAGGCCACTGG
ACGTGCACTATTTCAGCAGTACTTTGTTAATC-TTACTGTTTTTTAAGATGTTTA-TATCACACGACTGAATTAACAGTT
TAACACAGCTACAGCACAACCCTCCTCCCGCGACCCTTGCCTGCCGCCGCCACCCACC-----------CTCTCCCTCT-
---C---------------------------------CCGCGCGGTGCCTATGATGGG----------------------
-------------------------------------------------------------------AACGAGCACGGTG
GCCAGGGCGGAGTTCCCTGTTCAGGCGGCGGCAGCGGCGGCCACCTCCATAGCCGGAGGGTCAGCTGGGATTGGTCTCCG
GCGTGCTCTCAGGCGATGGTTGCTGGCGGCGGTCGTGGATCTGATGCTCGTTCAGATCCATCGCGAAGTGGCCCTTGGCC
GGCCGGCAGCACATAGAAGGGTTGGTGAGGGGCGGCTGGAGGTCATCCTCGACCGGAGTTCCGGCGGCTGCGTGCGTCTT
CACAGCGCG--GCTTCGCATGGATCCCATCAACTACGGAGTTGGG-TGGTACCATTGTCGGTGAAAATCATGTCGACTTC
GGTCATGGCGAACGATGATGGCATCGCTTTGATGCCGTTTTCTTGTCCAGACATCGTTGTTGTAGTCTGTGTTACCTCAC
TCGGGCTGCTACGGGAAAACTCTAGAGTTGGTTCTCTCCGATCAGTTGATGTCGACGTCTTTGATGTTGTTTTCCCTCCT
TGGGGCATCGTTTTAGAGCGGGTGCTGGCTGAAGTGGCCAAGAGGTGGAGCTATGTTGGATCTACTGCTTCGACGACAGC
AAGTTTTAGCC-CGTGGCGCAATGGAGTCTTGGCGATAGATAAGCGCAGTGTGGTGGAGCTGTCATGCATCGTGGTGGCG
TCGACTACAGTTGGGCCCGGCAAGGTCAATAT-GTTGATCCCTTCTAAAGATGGGACGAAGGAAGATGGCGGCGACGGCG
GATTTCGAGTGTGTGCATGCTATGTGTGTTGA------------------------------------------------
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>chr5B_1_TraesCS5B01G100800
TCGCCGGTGAGATACGGCGAGCATCTACAGAGAAGAAGAGGGGGGAGAGCGGAGCTTGCGGTGCAGAGGAGATGTTCGCG
AGCAGAAGAATGAGTGGATCTCGTTCACCCGTGAAGAGATAAGGTAAAAAGACTAGGCGGCCGTTCGGTGATGGACCCAC
GTGTAGACGAACGAGTTGCGGAGTGCGCGCTGTGACCGGCCGAAACTCGGCCCGTCGACCGCACGTAAGAGCATGGTTAA
TAGTATAGCCAGCTGCTGCCTATAAGCCAGTGTCAATGTCATCTACAACTCATCTTATAGCCAACATGTACAATAGTATA
CCAAGAGAGTGTACTACTTTTTTATTTTGTGGCCCACCTTTCATTCTCACAAAGTGCCTAGGAGCACGTGCTAGAGCTGG
CTCTTCACGAAGAACCCACTTACTTTCTCTCTCCTCTTCTATTTCCTCCAACTAAGCAGAAATATGCTAGTTTATTTCTT
ATAGCCCGCTGACTCAGCTCTATTATACTTGCTTTAAATGTTTCCCTAAAAAAATTGAATAAGAAAGCATTGAGAAATTG
TTGACTC--GGTCAAAATCGGGTTACCTAATTTTAATTAGAGACCTCAATTTAATATGGGATTTTAAAAACTAGGGAGTT
TTGTGCTGTAGGGATTATACCGGAGA--AAATGTGTCAGCGACGAGAAGTACCCTGTCGGCTACGATGCAGGATACCGAT
ATGGTACGGCCAGTGCTTTTCCAAGAACTGATTCCGACCAGCTCACCAAGCTGGTTTCTGAGGAACCGGTGCCGAGTCGC
CTCAGCTTCAGAATAGCATCCACACAGCTCCTCTCACCACGCTTCAGAGTAGCATCCACACGGCTCCTCTCATCACTTAT
CTGTTGGAGGAGAATCATGTCCAACTTGTTTTGCTTCTTCTACTTTTGACGGCCACATCACCATCGTCGACCTGGACCTG
GCCTAGCTTATCAAATATATGCGGCGCGGTGAGGCCACGATCCAATGAAGGTGCAATCTTTGCTTTTCCTTCAACATTCT
CACCCAGCAAAAGTTGAGAGGAAGAGATGCCGCGTCACAGTTGGTTCCTGTATGATGTTGCGGGAATCTGCTGCAAGTAA
GAAA-ATATTTCCTTCTACTTCTTCATTTTTCAGATGCATGACGCATGTACACACACTGCGGCGCCGGTGCGCGCAGCGA
AGGATATAGATTCTAGGATAGAGATAAGCTTGTCCTTTGCATATCTGCCTTGATAGTTGTCACCTGGAATGAAAATGGGA
ATAATCACAATGAGAGAGAAAAAGGCATAGTGCTCTGTAGAGCAATCTCCAGACTCCAGAGCTCAAGAATTTTGCGATTC
TTCGTCACTTCTTTGGCTCCTCGCCTTCCCAAGGGGTATTCTTGCTTGGCCCCTGCAAGTAGAATGCACAACTAGCTCTT
CAGATCAAATCTTTGCTGCGACTACCCGCCATGATATTCTGAATCTACTAATTCCTCAACTCGGATCTTAAGGCCACTGG
ACGTGCACTATTTCAGCAGTACTTTGTTAATC-TTACTGTTTTTTAAGATGTTTA-TATCACACGACTGAATTAACAGTT
TAACACAGCTACAGCACAACCCTCCTCCCGCGACCCTTGCCTGCCGCCGCCACCCACC-----------CTCTCCCTCT-
---C---------------------------------CCGCGCGGTGCCTATGATGGG----------------------
-------------------------------------------------------------------AACGAGCACGGTG
GCCAGGGCGGAGTTCCCTGTTCAGGCGGCGGCAGCGGCGGCCACCTCCATAGCCGGAGGGTCAGCTGGGATTGGTCTCCG
GCGTGCTCTCAGGCGATGGTTGCTGGCGGCGGTCGTGGATCTGATGCTCGTTCAGATCCATCGCGAAGTGGCCCTTGGCC
GGCCGGCAGCACATAGAAGGGTTGGTGAGGGGCGGCTGGAGGTCATCCTCGACCGGAGTTCCGGCGGCTGCGTGCGTCTT
CACAGCGCG--GCTTCGCATGGATCCCATCAACTACGGAGTTGGG-TGGTACCATTGTCGGTGAAAATCATGTCGACTTC
GGTCATGGCGAACGATGATGGCATCGCTTTGATGCCGTTTTCTTGTCCAGACATCGTTGTTGTAGTCTGTGTTACCTCAC
TCGGGCTGCTACGGGAAAACTCTAGAGTTGGTTCTCTCCGATCAGTTGATGTCGACGTCTTTGATGTTGTTTTCCCTCCT
TGGGGCATCGTTTTAGAGCGGGTGCTGGCTGAAGTGGCCAAGAGGTGGAGCTATGTTGGATCTACTGCTTCGACGACAGC
AAGTTTTAGCC-CGTGGCGCAATGGAGTCTTGGCGATAGATAAGCGCAGTGTGGTGGAGCTGTCATGCATCGTGGTGGCG
TCGACTACAGTTGGGCCCGGCAAGGTCAATAT-GTTGATCCCTTCTAAAGATGGGACGAAGGAAGATGGCGGCGACGGCG
GATTTCGAGTGTGTGCATGCTATGTGTGTTGAGGGTTTGCTATACTGATTGCTGCTTTCGGTCCGCTATGGGGCGGCTTT
GCAAGGCCATCGGCTTAGATGGTGTGTGGTGATGCAAGGTCAGGGCACATTATCAAATTTATGGGTGTAGCGACAAAGGC
CGCTAGAAAGGTGTCTTTGAATTGATCAATGTATTTATTTTGT-----TTGTTGAATAATATACTTCCTCCATTTTTTAT
GCAAGGCCACCATCAAAATTACAATTTGCAGCTATAGAAGGCCATTAACACAAATCGATGTAAAATTGATGAGCTTTGCC
TCGTACTAGCAACCGAAGACATTACCTCATGCATGCATGTGGGAGTGAGAAGATTGATTTGCATGCACCGTATTAATCAA
CCAACGAGAAGTGAGAGAGTTGTCTTGTTATGCGTTGGAGAGAAAATACACAAACACGTCAAGCAAGAAGAAAAGACTAG
TTTGTAACATTGGTTTAAGTAGCCGTTAATTTTTACCTTAGTACTCCCTCCTTTCCGGTTTATAGGGTTTATCTCAAAAT
TTTAGTTTTTCCATTTTGTAATGCTCAATTTGGTTGTTTTCCATCACATGTTCAGATTCCAAGATGCATTAAATTGTTGC
ATGCAAGTATTAAGAGAAAATTAACCTATGCATGTACTTTATGCATGCATGCATTGCAATTAATGCATTGATAAACATAA
TTTTTTGAGGGAAATAAGAGCATTAATTAGGTGCTTTTGCAAAACTACAAAAAGTATTCCACCACTCACCATCTATCTTG
ATTGGTGAGATTTTTGAATTGAGCGCTATAAACTGGAACGGAAGGAGTACCTGTAATATGATTTTGTGGCCTTGTATAAA
AAATTGAAGGGAGTAATAAAGATGGTTATGTACATTATTGAATGTAGAGGAGGGGTTTCAAGAAAAATTCAAAAGAAAAA
-----CACACCGCTACAGCTACATATGGGCTAACGCCTCACGCACCTAAGAGGATCTTAGACCATTTTCAATTGGACCCA
AA
>chr5A_527
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----------------------------------------------TAAAAGAATTGAATAAGAAAGCATTGAGAAATTG
TTGACTCTTGGTCAAAATCGGGTGACCTAATTCTAATTAGAGACCTCAATTTAATATGGGATTTTAAAAACTAGAGAGTT
TAGTGTTATAGGGATTATACAGGAGA--AAATGCGTCAGCGACGAGAAGTACCCTGTCGGCTACGATGCAGGATACCGAT
ATGGTACGGCCAGTGCTTTTCCAAGAACTGATTCCGACCAGCTCACCAAGCTGGTTTCTGAGGAACCGGTGCCGAGTCGC
CTCAGCTTCAGAATGGCATCCACACAGCTCCTCTCACCACGCTTCAGAATAGCATCCACACGGCTCCTCTCATCACTTAT
CTGTTGGAGGAGAATCATGTCCAACTTGCTTTGCTTCTTCTACTTTTGACGGCCACATCATAATCGTCGACCTGGACCTG
GCCTAGCTTATCAAATATATGCGGCGCGGTGAGGCCACGATCCGATGAAGGTGCAATCTTTGCTTTTCCTTCAACATTCT
CACCCAGCAAAAGTTGAGAGGAAGAGATGCCGCGTCACAGTTGGTTCCTGTATGATGTTGCGGGAATCTGCTGCAAGTAA
GAAAAATATTTCCTTCTACTTCTTCATTTTTCAGATGCATGACGCATGTACACACACTGCGGCGCCGGTACGCGCAGCGA
AGGATGCAGATTCTAGGATAGAGATAAGCTTGTCCTTTGCATATCTGCCTTGATAGTTGTCACCTGGAATGAAAATGGGA
ATAATCACAATGAGAGAGAAAAAGGCATAGTGCTCTGTAGAGCAATCTCCAGACTCCAGAGCTCAAGAATTTTGTGATTC
TTCGTCACTTCTTTGGCTCCTCGCCTTCCCAAGGGGTATTCTTGCTTGGCCCCTGCAAGTAGAATGCACAATTAGCTCTT
CAGATCAAATCTTTGCTTCGACTACCCGTCATGATATTCTGAATCTACTAATTCCTCAACTCGGATCTTAAGGCCACTGG
AGGTGCACTATTTCAGCAGTACTACTTTGGTAATTACGGTTTTTTAAGATGTTTAA---CACAGGACTGAA--------T
TAACACAGCTACAGCACAACCCTCCTCCCGCGACCCTTGCCTGCCGCCGCCACCCTCCTCCCAATTTCTCTCTCTCTCTC
TCTCCTCGCCGCTCCCGGAGGCTGCTGCTAGACAAGGCCACG--GTGCCCATGATGGGGCGGCGTGGATCTGATCCCCAG
TGGTC------TCATAGGCCACCGATGGTGTATCCTCCCTAGGGAGTTTGGTGGTGGTCATTGGACCAACGAGCACGATG
GCCAGGGCGGAGTTCCCTGTTCAGGCGGCGGCGGCAGCGGTCCCCTCCATGGCCGGAGGGTCAGCGGGGATCGGTCTCCG
GCGTGCTCTCAGGCGATGGTTGCTGGTGGCGATCGTGGATCTGATGCCAGTTCAGATCCATCGCGGTGTGGCCCTTGGCC
GGCCGGCGGCACATAGAAGGGTCGGTGAGGGGCGGCTGCAGGTCATCCTCGACTGGCGTTCCGGCGGCTGCGTGCGTCTT
C-------------------------------------------------------------------------------
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>chr5D_652
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-------------ATTATTCCGGAGAAAAAATGCGTCAGCGACGAGAAGTACCCTGTCGGCTACGATGTAGGATACCGAT
ATGGTACGGCCAGTGCTTTTCCAAGAACTGATACCGGCCAGCTCCCCAAGCTGGTTTCTGAGGAACCGGTGCCGAGTCGC
CTCAGCTTCAGAATAGCATCCGCCCAGCTCCTCTCACCACGCTTCAGAATAGCATCCACACGGCTCCTCTCGTCACTTAT
CTGTTGGAAGAGAATCATGTCCAACTTGCTTTGCTTCTTCTACTTTTGACGGCCACATCACCATCGTCGACCTGGACCTG
GCCTAGCTTATCAAATATATGCGGCGCGGTGAGGCCACGATCCGATGAAGGTGCAATCTTTGCTTTTCCTTCAACATTCT
CACCCAGCAAAAGTTGAGAGGAAGAGATGCCGCGTCACAGTTGCTTCCTGTATGATGTTGCGGGAATCTGCTGCAAGTAA
GAAA-ATATTTCCTTCTACTTC---ATTTTTCAGATGCATGACGCATGTACACACACTGCGGCGCCGGTACGCACAGCGA
AGGATGCAGATTCTAGGATAGAGATAAGCTTGTCCTTTGCATATCTGCCTTGATAGTTGTCACCTGGAATGAAAATGGGA
ATAATCACAATGAGAGAGAAAAAGGCATAGTGCTCTGTAGAGCAATCTCCAGACTCCAGAGCTCAAGAATTTTGTGATTC
TTCGTCACTTCTTTGGCTCCTCGCGTTCCCAAGGGGTATTCTTGCTTGGCCCCTGCAAGTAGAATGCACAATTAGCTCTT
CAGATCAAATCTTTGCTGCGACTACCCGCCATGATATTCTGAATCTACTAATTCTTCAACTCGGATCTTAAGGCCACTGG
AGGTGCACTATTTCAGCAGT------------------------------------------------------------
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>chr5D_1546
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------------------------------TC-TTACGATGTTTTAAGATGTTTATTATCACACGACTGAA--------T
TAACACAGCTACAGCACAACCCTCCTCCCGCGACCC-----TGCCGCCGCCACCCTCCTCCCAATCTCTCTCTCTCTCT-
---CCTCGCCACTCCCGGAGGCTGCTGCCAGACAAGGCCGCGCTGTGCCCATGATGGGGCGGCATGGATCTGATCCCCAG
TGGTCTCATAGTCATAGGCCACCGATGGTGTATCCTCCCCAGGGAGATTGGTGGTGGTCATTGGACCAACGAGCACGGTG
GCCAGGGCGGAGTTCCCTGTTCAGGCGGCGGCGGCGGCGGTCACCTCCATGGCCCGAGGGTCAGCGGGGATCGGTCTCCG
ACGTGCTCTCAGGCGATGGTTGCTGGCGGCAGTTGTGGATCTGAT-----------------------TGGCCCTTAGCC
GGCCGGTGGCACATAGAAGGGTCGGTGGGGGGCGGCTGGAGGTCATCCTCGAC-GGCGTTCTGGCGGCTGCGTGCGTATT
CACAGCGCGCGGCTCCGCGCGGATCCAATCAACTACGGAGTTGGGGTGGTACGATTGCTAGTGAAAATCATGCCGACTTC
GGTCATGGCGGAAC-----GGCGTCACTTTGACGCGGTTTTCTTGTACATACATCATCATTGCAGTCTGTGTCACCTCAC
TTGGGCTGCTACGAGGAAACTCTAGAGCCGGTTCTCTCGGATCGGATGATGTCAGCGTTTTTGGTGTTGTTTTCCCTTCT
GGGGGCATCGTTTTAGAGCGGGTGCTGGCTGAAGTGGCCAAGAGGTGGAGTTGTGTTGCATCTACTGCTTCAACGACAGC
AGGTCTCAGCCGCGTGGCACAATGGAGTCTTGGCGATGATTAAGCGCAGTGTGGTGGAGTTGTCATGCGTCATGGTGGCA
TTGACGACAGTTGGGCCTAATATGGTCAATGCCGTTGATCCCTTCTGAAGATGGGACGAAGGAGGATGGCGGC---GGCG
GATTCTGAGTGTGTGCATGCCATGTGCGTTGAGGATTTGCTATACCGATTGCTGCTTTCGGTCCGCTGTGGGGCGGCTTT
GCGAGGCGACCAGTTTAGATGGTGTGTGGTGATGCGAGGTCAGAACACATTATCAAATTTGTAGGTGCAGCGACAAAGAT
CGTTAGAAAGATGTCTTTGAATTAATCAATGTATTTATTTTGTCAGGGTTGTTGAATAATTTT-----------------
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---------------ATAAAGATGGTTGTATACATTACTGAATGCAGAGGAGGGGTTTCAACTTATTGTTTTTCAAAAAG
AAAAGCACACCGCTACAGCTACATATGGGCTAACGCCTCACGCACCTAAGAGGATCTTAGACCATTTCCAATGGGACCCA
AA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----------------------------
-----------------------S--------S-----------------------------------------S-----
-S---S-S-------------------------S----------------------------------------------
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------------------------------------------------S-------------------------------
----------------------------S---------------------------------------------------
-------------------------------------------S------------------------------------
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---------------------------------------------------------------------S----------
-----SS-------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
-----------------------------------------------------------------------S--------
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-S---------------------SSS--SS-------S---------------------------------SSSSSSSS-
-------------------------------------------------------S------------------S-----
-------------------------------------------S-----S------------------------------
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--------------------------------S-------S---------S--------------S-----S--------
-----------------------------------------------SS----------------SS-------------
-------S--------------S------------------------------S--S-----------------------
--------------S---SS------S-------------------------S----SSS------------S-------
----------S-SSSSSSS---S--S------S--S----------S--S-----S-SS---S---------S-------
-S-----------S-S-----------SS---------S----S-S-------SS---S----S-------------S--
S-------------------------------------------------S-S-----S------------S--------
-S--S-S-----------S------------------SSS-------------------S--------S--S-------S
-S---S-----------SSSS-S-------SS--------------S----------------S---------SSS----
----SS--------------S-----S-------S----------S---------------------S------------
--S----S-S-S-S---------------------S-------SS---------------S-S----S----------SS
--S-------S------------S------------------------------------S-SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS------------S-S-------S------S----------------SSS-SSS-SSSSSS----S
-------------------------------------------------------------------S----S-------
--
>forward_418
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------------------------------------------------------------------------------GG
CTCTTCACGAAGAACCCA--------------------------------------------------------------
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>reverse_1730
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-------------------------------------------------TATGATGGGAACGAGCACGG-----------
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--
>forward_849
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-----------------------------CCTCTCACCACGCTTCAGAG-------------------------------
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--
>reverse_2909
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----------------------------ATGCATGCATGTGGGAGTGA--------------------------------
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--
