>input_sequence_51400
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----------------------------------------------------------------ATGGGGAGGTCTCCCT
GCTGCGACAAGGCGAGCGTGAAGCGAGGGCCGTGGTCGCGGGAGGAGGACGCCATTCTCAGGAACTTCGTCAGAAGGTTC
GCCAATGCCGGCAACTGGATCACGCTGCCACAGAAAGCAGGTACCGTATACGTGTTACGTGCTACGGCCGGCCGCCGGCG
TATATAGTTCATCCGAGACGAAAGGAAGAACGCGCCTGCCGGAGCTAGGAATTCATTCGTCAGCCGTACGCACTTAGGTT
CATTTTTGCTTCCACCGTACTACGTACGTACGTGCCTTGAGG----ATGGTGCT--------AACAGTGGTCAAAAGAAA
CTCGTGTGAGCTAGGTTCGTCTGCTAGCAGTGGAATGCATGTGTGAGTTGCGACGTCTCTGTCTAGCAAGGCTGGTTGGT
TGACAATTGACACAGTTTACGTAGTTAGTTTACGCAAGCTTATCATCGCTGC--------------------------GT
AATTAATTTACTCACCTAGCCAGGACTCCAGTTAGCGTGTGGCACACGTCAGAGTGCTTGTCCACTCTGCAAAGCACTTT
ACCTTCTCTATAGCTAGTTCTGTTTCTACTAGTAGTAATTTGCATATGCATCATCAGGGCTTAACCGCTGTGGCAAGAGC
TGCCGGCTGCGGTGGCTCAACTACCTCCGCCCCGCGCTCCGGCACGGCGGCTTCACCGACGAGGAGGACAGCCTCATATT
GTCCCTCTACGGCGACATCGGAAGCAGGTATATATACA-CGGATACATGACTACCTAGT--TCTTTGTTGAACATATATA
CGTTTGACGGCTGAATTAATGTCACTACTTGAAACTATATATGTGGTGGTTTGGTT------------------------
TGTAA----CCAGGTGGTCGGTGATCGCGGCCAAGCTCCCCGGCCGAACAGACAACGACGTCAAGAACCACTGGAACACC
AAGCTCAAGAAGAGGTACTACTCGCTGACCGCGGCGCCATCAACTCCCCCTACAGGCGGCGACGCCGTCGCGTCCGCCGA
CAGCCCTCA------CGGGGTCGATCAATCGTCCCTCCCCCCTCCTCCACCGGCCATGGTGAACCTCGGCGCGGCCCTCG
CCACGCTCGACGACGGCGGAGAGCTCACGCGTGAATCGGAGCAGCTGTACGCCGAGCTCATGGGGCTCATCGAGCCGCAG
TCCACGACCCGTGAATCCACCGGGGAGGTGATGTCGTCGCCGTCGTCA---------------TTTGGAACAAGTCCGAC
GGCCAGT---AGTTTTGCAGCGGGGAGCAGCGCTACGTGGCCAGTGGACGTGCATGACACAATACTGTGGCCGGAGTCTA
GCGGGAGCGGCACGGT---TGAATTTGATGATCCTTGCGTTGCTCACACTTTCGGTCCGGCGTCCACGCCCGACTCTTTC
CAAGATTTGT---TGGCCTCATCTTACGACGAGGTCATAGCGACTCAAGAGTTGCTGTAC--CTAGGAATGAATTGG---
TCTGAAT-TCTGA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------
>chr3D_1_TraesCS3D01G286300
TACATCAAGTTTCTTGGTATGTAACTCATAGAAAGTCTCACACAAGAAG---ACTCCTTCTAAGATGTGCCACCCATGCA
TAAAAGCGGTTTAGGTTTGTCTCACGGCTTTGTGCGGAATTGATGCAATGTGATTAGTGGCTACTTTGGTGGTCGTGGCC
TCATGGGAAACTACCAGCAACACCAGCTACATGTATGTACTACCATCTATATACAATCTTTTGAAGCGGAAGTAATCAAG
CTATCACCAAGCTAGGTCATGAGATTAGCGGCTAAAACGAAATAGATTATCGTCTGGTAGTTGCCAAGTTATCATCAAGC
----TTTTCTAGGTATATGGAATACG------------------------------GGCCAATGCAAGTGCCTATAGACT
AGAGGCCGGGGCCGCCTGACCAAAGCATATATGTCGAGTCTCTTTTGAGCATCTCGGCAAGAACTGAC---ACTTATTGA
ACTTCTATACATA--TAATGTTGCAGCGCGTCATAC----AAAAGAGAATAGT-GGTTATCTTGGTATTTTGTTTTTGCG
AGGATCGGTTATGTATATATGCAAGTTGTAGCTAGTACAGG---------------------------------------
-ATGAGTTAAACTGACCGGTAGTGGTTGAACTCTTCTGGATGAGACTATGAGGGTGTTTGTTTCCAGGGACTTATTGGTT
TAGGGACTTAAAAAAGTCCCTATAAGTCCCATCTAAATCAAACAGGAAGGACTTATAGGGACTTAAAGTGGGCATTTGGG
ATTTAGGAAATAAGACTCTCAAGAAGAGTCTTATAGGACTTATAGTTATAAGTCCCAGAATCAAACAGGTAGGGACTTTT
TAGGGACTTGGGACTAAAAAAGTCTTAGGACTTACTATGAACCAAACAGGGCCTATATATGCTTGGTCAACTTGCTCAGT
GCAG---GGCCCTTGCTGCT----CTACATAACCCCTTCCTAACCGTCGGGAGGATTACTCGACCGGAATCGGCGATCCC
TCTCCCTCTCCTTCCCACATCTGCATTCTGCGGCCTGAACTGTTG-G---------ACTGATCCATGGGGAGGTCTCCCT
GCTGCGACAAGGCGAGCGTGAAGCGAGGGCCGTGGTCGCGGGAGGAGGACGCCATTCTCAGGAACTTCGTCAGAAGGTTC
GCCAATGCCGGCAACTGGATCACGCTGCCACAGAAAGCAGGTACCGTATACGTGTTACGTGCTACGGCCGGCCGCCGGCG
TATATAGTTCATCCGAGACGAAAGGAAGAACGCGCCTGCCGGAGCTAGGAATTCATTCGTCAGCCGTACGCACTTAGGTT
CATTTTTGCTTCCACCGTACTACGTACGTACGTGCCTTGAGG----ATGGTGCT--------AACAGTGGTCAAAAGAAA
CTCGTGTGAGCTAGGTTCGTCTGCTAGCAGTGGAATGCATGTGTGAGTTGCGACGTCTCTGTCTAGCAAGGCTGGTTGGT
TGACAATTGACACAGTTTACGTAGTTAGTTTACGCAAGCTTATCATCGCTGC--------------------------GT
AATTAATTTACTCACCTAGCCAGGACTCCAGTTAGCGTGTGGCACACGTCAGAGTGCTTGTCCACTCTGCAAAGCACTTT
ACCTTCTCTATAGCTAGTTCTGTTTCTACTAGTAGTAATTTGCATATGCATCATCAGGGCTTAACCGCTGTGGCAAGAGC
TGCCGGCTGCGGTGGCTCAACTACCTCCGCCCCGCGCTCCGGCACGGCGGCTTCACCGACGAGGAGGACAGCCTCATATT
GTCCCTCTACGGCGACATCGGAAGCAGGTATATATACA-CGGATACATGACTACCTAGT--TCTTTGTTGAACATATATA
CGTTTGACGGCTGAATTAATGTCACTACTTGAAACTATATATGTGGTGGTTTGGTT------------------------
TGTAA----CCAGGTGGTCGGTGATCGCGGCCAAGCTCCCCGGCCGAACAGACAACGACGTCAAGAACCACTGGAACACC
AAGCTCAAGAAGAGGTACTACTCGCTGACCGCGGCGCCATCAACTCCCCCTACAGGCGGCGACGCCGTCGCGTCCGCCGA
CAGCCCTCA------CGGGGTCGATCAATCGTCCCTCCCCCCTCCTCCACCGGCCATGGTGAACCTCGGCGCGGCCCTCG
CCACGCTCGACGACGGCGGAGAGCTCACGCGTGAATCGGAGCAGCTGTACGCCGAGCTCATGGGGCTCATCGAGCCGCAG
TCCACGACCCGTGAATCCACCGGGGAGGTGATGTCGTCGCCGTCGTCA---------------TTTGGAACAAGTCCGAC
GGCCAGT---AGTTTTGCAGCGGGGAGCAGCGCTACGTGGCCAGTGGACGTGCATGACACAATACTGTGGCCGGAGTCTA
GCGGGAGCGGCACGGT---TGAATTTGATGATCCTTGCGTTGCTCACACTTTCGGTCCGGCGTCCACGCCCGACTCTTTC
CAAGATTTGT---TGGCCTCATCTTACGACGAGGTCATAGCGACTCAAGAGTTGCTGTAC--CTAGGAATGAATTGG---
TCTGAAT-TCTGAATTAGCGTGGTTACTTT--TGTATATATTTAGATCTACTGTTTTTAAGTTATACTCCCTCCGGTCGT
TTTTAGTTTGCATATAAGTTTTTGTCCGAAGACAAAGTATCTCTACTTTAACCAAACTTATA--AAAAATATCGACATTC
TCAATGTCAAATTAATATTGTTAGATTCATTATGAAATATAGTTTCATAATACATATATATTTGGTTTTGTAGATGTTAA
TATTTTTTAATATAAAATTGGTCAAACTTTGCATAGTTTGACTTGAGACAAATATAATACTCAGAGTAAAAATGACCAGA
GGGAGCGAGTATTACCACACATCATGAAAAGCTTGTCTTAGATCTGTCTACCATCTTTTTGGGACGGAGTATAAAACATT
TTGATTCGTAACTAGAATACCCATGACATGAAATCTTTTTTTAGAAACGGGAACAAAAAATTTGTCTCATCTTATTAATT
AAGAAGAAGAATGACAAGGTTTGAGAGTTTCATGACCACAAATGTCAATACACAAGGGGAGCACTCTCCCGAAATTTTTT
AGCCCCGGCAATGATCCAAATCTTCGCCTCAATGTTGATCGAGAAAATCACGTGGGTTGGTAAAGATGACTTGTTTCGAA
AAACTCTCGCATTTCTTCATTCCAGATTGGCCAACAAACCAGCATCTTCATAAAATTGAACGCCCTCCCGCCATTCCGAG
TTGTCCGTCGCTAGCATTCCACCAATATCTTACCCAATGTAGGTCAGACCCATCGCTAGCCTGAGATTACATCCCAAGCC
AGTTATAGATCATGTTCCAAAGACGAATAGAGTAGGGATATTTGAAAATAAGGTGTACTGCCGATTCCGTTCCGTTTTGC
ACAACTGGCAAAGACTACAGTTTGGCCAACCCCTCTATGCAAATATTTCCGCCGTCCAAATTATGTTTCGGAGAATGAGC
CATGAGAAAAAACATAATCTTTGGTGACGCAAAAAACATTCCACACCATCCTAGACA
>chr3B_1
TACATCAAGTTTCTTGGTATGTAACTCATAGAAAGTCTCACACAAGAAGACCACTCCTTCTAAGATGTGCCACCCATGCA
TAAAGGCGGTTTAGGTTTGTCTCACGGCTTTGTGCGGAATTGATGCAATGTGATTAGTGGCTACTTTGGTGGTCGTGGCC
TCATCGGAAACAACTAGCAACACCAGCTACATGTATGTACTACCATCCATAGACAT------------------------
-------CAAGCTAGGTCATGAGATTAGTGGCTATAACGAAATAGATTATCGTCTGGTAGTTGCCAAGTTATCATCAAGC
TAGGTTTTCTAGGTATATGGAATACG------------------------------GGCCAATGCAAGTGCCTATAGACT
AGAGGCCGGGGCCGCCTGACCAAAGCATATATGTTGAGCCTCTTTTGAGCATCTTGGCAAGAACTGTCACTACTTATTGA
ACTTCTATACATACATAATGTTGCAGGGCATCATCATACAAAAAGAGAATAGT-GGTTATCTTGGTATTTTGTTTTTGCG
AGGATCGGTTATGTATATATGCAAGTTGTAGCTAGTACAG----------------------------------------
TATGAGTTAAACTGACCGGTAGTGGTTGAACTCTTCTGGATGAGA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------CTATATATGCTGGGTCAACTTGCTCAGT
GCAGCATGGCCGTTGCTGCT----CTATATAACTCCTTCCTAACCGTCGGGAGGATTACTCGACCGGAATCGGCGATCCC
GATCCATCTTCTTCCCAGATCTGCATTCTCCCTCATCGGGCGGCCTGAACTGTTGGACCGATCAATGGGGAGGTCTCCCT
GCTGCGACAAGGCGAGCGTGAAGCGAGGGCCGTGGTCGCGGGAGGAGGACGCCATCCTCAGGAACTTCGTCCAGAGGTTC
GCCAATGCCGGCAACTGGATCACGCTGCCACAGAAAGCAGGT-CCGTATACGTGTTACGTGCTACGGCTGGCCGCCGGCG
TATATACTTCATCCGAGACGAAAGGAAGAACGCGCGGGCCGGAGCTAGGAAATCTTTCGCCGGCCGTACGTACTTAGGTT
TATTTTTGCTTCCACCGTACTACGTACGTACGTGCCTTGAGG----ATGGTGGTAACA--AAAACAGTGGTCAAAAGAAA
CTCGTGTGAGCTAGGTTCGTCGGCTAGCAGTGGAATGCATGTGTGAGTTGCGACGTCTCTATCTAGCAAGGCTGGTTGGT
TGACAATTGACACAGTTTACGTAGTTAGTTTACGCAAGCTTATCATCGCTGCTTAATTTTAAAAAATAATAATTTTCCGT
AATTAATTTACTCACCTAGCCAGGACTTTAGTTCGCGTGTGGCACACGTCAGAGTGTTT-----------------CTTT
ACCTTACTTGT--CTAGTTCTGTATC---------TAATCTGCATATGCATCATCAGGGCTTAACCGATGTGGTAAGAGC
TGCCGGCTGCGGTGGCTCAACTACCTCCGCCCCGCGCTCCGGCATGGCGGCTTCACCGAGGAGGAGGACAGCCTCATATT
GTCCCTCTACGGCGACATCGGAAGCAGGTACATATACA-TGGATACATGACTAACTAGT--TCTTTGTCGAACATATATA
CGTTTGACAGCTGAATTCATGTCACCACTGGAAAAAACTCT----GTGGTTTGGTT------------------------
TGTAA----CCAGGTGGTCGGTCATCGCGGCCAAGCTCCCCGGCCGAACAGACAACGATGTCAAGAACCACTGGAACACC
AAGCTCAAGAAGAGGTACTACTCGCTGACCGCGGCGCCATCAACTCCCCCTACAGGCGGCGACGCCATCGCGTCCGCGGA
CAGCCCTCA------CGGGGTCGACCAATCGTCCCTCCCCCCTCCTGCTCCTGCCCTGGTAAATCTCGACGCGGCCCTCG
CCACGGTCGACGACGGCGGAGAGCTCACGCACGAATCGGAGCAGCTGTACGCCGAGCTCATGGGGCTCATCGAGCCGCAG
TCCACGACCCATACGTCCACCGGGGAGGTGATGTCGTCGCCGTCATCGTCATCGCAGCCACCGTTTGGAGCAAGTCCGAC
CGTCAGT---AGTTTTGCAGCGGGGAGCAGCGCTACGTGGCCAGTGGACGTGCATGACACAATACTGTGGCCGGAGTCTA
GCGGGAACGGCATGGT---TGAATTTGACGATCCATGCGTTGCTCAGGCTTTCGGTCCGCCGTCCA--------------
--------------------------------------------------------------------------------
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---------------------------------------------------------
>chr3A_3
--CATCAAGTTTCTTGGTATATAACTCATGGACGCTCTCATTCAAGATGATCACTCCTTCTAGGATGTGCCGCA---GCA
TAAAAGCGGTTTAGGTTGGCCTCACCACTTTGTTCGCAATTGATGTAGTGCGATTAGTGCCTAGGTTGGCGGTCGTGGGA
-----------AACCAGCAACATCAGTTACATCTAAGTACG---ATCCATAGACAATCTTTTGAAGCGGAACTAATGAAG
TAAGTCAAAAT-----------------CGGCTAAAACGAAATAGATTATCGTCTGGTAGTTGCCAAGTTATCATCAAGC
TAGGTTTTCTAAGTATATACATATATTTTTGATGGAAATGGGTTTTCTAGGTATATGGCCAATGCAAGTGCCCATGGAGT
ATGGACATTGTCGTCCAACC--AAGCATATATGTTGAGCCTGTTTTGAGCATCTAGACAAGAACTGTC---GCTTATTGA
ACTTCCATACATA----ATGTTGCAGG----CATCATACAAAATTTAAACCCACGGTTATCTTGGTATTTTGTTTTTGTA
AGGAACGGTTATGTATATATGCAAGTTGTGGCACGGAACAACGCCTTATGAGTTAATCCTAAAAAAAGAAAGCTAGTACT
TATGAGTTAATCTGACCGGTAGTGGTTGAACTCTTCTGGATGAGA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------CTATATATGCTGGGTCAACTTGCTCAGT
GCAGCAGGGCCGTTGCTCCTCTAGCTATATAACCCCTTCCTAACCGTCGGGAGGATTAGACGACGGGAATGTCAGCAA--
--TCCCGCTTCTTCCCACACCTGCATTCTGCCTCATCCGGCGGCCTG---------ACTGATCAATGGGGAGGTCTCCCT
GCTGCGACAAGGCGAGCGTGAAGCGAGGGCCGTGGTCGCGGGAGGAGGACGCCGTCCTCAGGAACTTCGTCCAGAGGTTC
GCCAATGCCGGCAACTGGATCACGCTGCCACAGAAAGCAGGTACCGTATACGTGTTACGTGCTACGGCTGGCCGCCGGCG
TATATACTTCATCCGAGACGAAAGGAAGAACGCGCGGGCCGGAGCTAGGAAATCTTTCGCCGGCCGTACGTACTTAGGTT
TATTTTTGCCTTGACC-TACTACGTACGTACGTGCCTTGAGGGAGGATGGTGGTAACAAAAAAACAGTGGTCAAAAGAAA
CTCGTGTGAGCTAGGTTCGTCGGCTAGCAGTGGAATGCATGTGTGAGTTGCGACGTCTCTGTCTAGCAAGGCTGGTTGGT
TGACAATTGACACAGTTTACGTAGTTAGTTTACGCAAGCTTATCATCGCTGCTTAAC------------TAATTTTCCGT
AATTAATTTACTCACCTAGCCAGGACTCCAGTTCGCGTGTGGCACACGTCAGAGTGTTTGT-------------------
-CCTTCTCTATAGCTAGTTCTGTTTC---------TAATTTGCATATGCATCATCAGGGCTTAACCGCTGTGGCAAGAGC
TGCCGGCTCCGGTGGCTCAACTACCTCCGCCCCGCGCTCCGGCACGGCGGCTTCACCGAGGAGGAGGACAGCCTCATATT
GTCCCTCTATGGCGACATCGGAAGCAGGTATATATGGAGTGGATACATGACTAGCTATAGCTCTTTGTTCAAC----ATA
CGTTTGACAGCTGAATTAATGAAC---------CTCTGTGCA----TGGTTTGGTT------------------------
TGTACTGACCCAGGTGGTCGGTGATCGCGGCCAAGCTGCCCGGCCGAACAGACAACGACGTCAAGAACCACTGGAACACC
AAGCTCAAGAAGAGGTACTACTCGCTGACCGCGGCGCCATCAACTCCTCCTACAGGCGGCGACGCCATCGCGGCCGCCGA
CAGCCCTCA------CGGGGCCGACCGATCGTCCCTCCCCCCTCCTCCTCCCTCCCTGGTGAATCTCGACGCGGCCCTCG
CCACGGCCGACGACGGCGGAGAGCTCACGCGCGAATCGGAGCAGCTTTACGCCGAGCTCATGGGGCTCATCGAGCCGCAG
TCCACGACCCGTGAATCCACCGGGGAGGTGATGTCGTCGCCGTCTTCA---------------TTTGGAACAAGTCCGGC
CGCCAGT---AGTTTTGCAGCTGGGAGCAGCGCTACGTGGCCAGTGGACGTGCATGACACAATACTCTGGCCGGAGTCTA
GCGGGAACGGCATGGT---TGAATTTGATGATCCTTGCGTTGCTCACATTTTCGGTCCGCCGTCCACGCCCGACTCTTTC
CTAGATTTGT---TGGCCTCATCTTACGACGAGGTCATAGCGACGCAAGAGTTGCTGTAC--CTAGGAACGAATTGG---
TCTGAAGATCTGAATTAGCGTGGTAACTTTTGTGTATATATTTAGATCTACTGTTTCTAAGTTATACTCCATCCAGTCAT
TTTTAGTCTGCATATAAGTTTT-GTCCAAAGATAAAATATCTCTACGTTAACCAAACTTGTAGAAAAATTATCAACATTC
TCAATGTCAAATCAATATTGTTAGGTTCATTATGAAATGTAGTTTCATACTATATATAT---------------------
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>chr4D_1584
ATGAAT--------------------------------------------------------------------------
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----------------------------------------------------ATCAGGGCTTAACCGCTGCGGCAAGAGC
TGCCGCCTACGGTGGCTCAACTACCTCCGCCCGGCGCTCCGGCACGGCCGCTTCACCGACGAGGAGGACAGCCTCATATT
GTCCCTCTACGCCGACATCGGAAGCAAGTATATATAGCTAGCCAGCTGC-------------------------------
------------------ATGAAC---------CTCTTTGTTTCTCG-AAACATTAGTCTGGCAGCTAA-----AACTTA
TGTCA----CCAGGTGGTCCGTGATCGCCGCCAAGCTCCCCGGCCGAACGGACAACGACGTCAAGAACCACTGGAACACC
AAGCTCAAGAAGAGGCACCTTCTGGCCATGGCGCCGTCACCAACTCCTCCTAC---------------CGCGGCCACCGA
CAGCCCTTCCGCCTCCGACTCCGATGAATCCTCCCTCCCCCCTCCACCTCTCGACGAA------------GCCGCCGTCG
CCACGGTGGACCACGGCGGAGAGCTCACGCACAGATCGGAGGAGCTGTACGCCGAGCTCATGGGGCTCATCCAACAGCAG
CCCA------------CCAACGGGGACGTGAGGTCGTCATCGTCGTCGTCGTTGCCATCGACA------------CCGAC
GGCTGGTGCAAGTTCTGCCGGCGTCACCAGCGCTGGGTGGCCCGTAGACG------ACAAAGAGTTCTTGCCGGAGTCCA
GCGGGAGCAGCATGGTCGTTGACCTTGACGATCCTTGCGCTGCTCACGCATTCGGTGCGACGAC------------TTTC
CAAGAC---T---TGGCCTCGTCTTATGACGAGATCATAGGGACGGAAGGGTTACTCTACTACTAGGAACGAATTGGGGT
TCTAAGT-TCTGAAGTAGC-------------------------------------------------------------
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>chr5A_1584
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---------------------------------------------ATGGATCATCAGGGCTTAACCGCTGCGGCAAGAGC
TGCCGCCTGCGGTGGCTCAACTACCTCCGCCCGGCGCTCCGGCACGGTCAGTTCACCGACGAGGAGGACAGCCTCATATT
GTCCCTCTACGCCGACATCGGAAGCAAGTATATATAGCTAGCTAGCTGC-------------------------------
------------------ATGCGCTGCATGCATCTCTTTGTTCCTCG-AAACATTAGTCTGGCAGCTAA-----AACTTA
TGTCA----CCAGGTGGTCCGTGATCGCCGCCAAGCTCCCCGGCCGAACGGACAACGACGTCAAGAACCACTGGAACACC
AAGCTCAAGAAGAGGCACCTGCTGGCCATGGCGCCGTCACCAACTCCTCCTAC---------------CCCGGCCACCGA
CAGCCCTTCCGCCTCCGAGGCCGACGAATCCTCCCTCCCCCCTCCACCTCTCGACGAA------------GAAGCCCTCG
CCACGGTTGACGACGGCGGAGAGCTCAAGCACAGATCGGAGGAGCTGTACGCCGAGCTCATGGGGCTCATCCAGCAGCAG
CCCA------------TGACCGGGGACGTGAGGTCTTCATCGTCGTCGTCGTTGTCATCGACA------------CCGAC
GGCTGGTGCAAGTTCTGCCGGGGTCAGCAACGCTGCGTGGTCCGTAGACG------ACGAAGAATTCTTGCCGGAGTCTA
GCGGGAGCAGCATGGTCGTTGACCTTCACGATCCTTGCGCTGCTCACGCATTCGGTGCGACGTC------------TTTC
CAAGAC---TTGCTGGCCTCATCTTATGACGAGATCATAGGGACGGAAGGGTTGCTCTACTACTAGGAACGAATTGG---
--------------------------------------------------------------------------------
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---------------------------------------------------------
>chr4B_1584
--------------------------------------------------------------------------------
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---------------------------------------------ATGGATCATCAGGGCTTAACCGCTGCGGCAAGAGC
TGCCGCCTACGGTGGCTCAACTACCTCCGCCCGGCGCTCCGGCACGGCCGCTTCACCGACGAGGAGGACAGCCTCATTCT
GTCCCTCTACGGCGACATCGGAAGCAAGTATATATAGCTAGCTAGCTGC-------------------------------
------------------ATGCGCTGCATGCATCTCTTTGTTACTCGTAAACATTAGTCTGGCTCTGGCAGCTGAACTCA
TGTCA----TCAGGTGGTCCGTGATCGCCGCCAAGCTCCCCGGCCGAACGGACAACGACGTCAAGAACCACTGGAACACC
AAGCTCAAGAAGAGGCACCTGCTGGCCATGGCGCCGTCACCAACTCCTCCTAC---------------CGCGGCCACGGA
CAGCTCTTCCGCCTCCGACGCCGATGAATCCCCCCTCCTCCCTCCTCCTCTCGACGAGCCCGCCCT------CGCCCTCG
CCACGGTTGACGACGGCGGAGAGCTCACCCACAGATCGGAGGAGCTGTACGCCGAGCTCATGGGGCTCATCCAGCAGCAG
CCCA------------CGACCGGGGACGTGAGGTCGCCATCGTCGTCGTCGTTGTCATCGACA------------CCGAC
GGCTGGTGCAAGTTCTGCCGGCGTCAGCACCGCTACGTCGCCCGTGGA------TGACAAAGAATTCTTGCCGGAGTCTC
GCGGGAGCAGCATGGTCGTTGAACTTGACGATCCTTGCGCTGCTCACGCATTCGGGGCGACGTC------------TTTC
CAAGAC---TTGCTGGCCTCGTCTTACGACGAGATCATCGGGAAGGAAGGGTTACTCTACTACTAGGAACGAATTGG---
--------------------------------------------------------------------------------
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---------------------------------------------------------
>SNPs
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S------S-----------------------------------S---S-------------------S----S---
SS-SSSS-------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S---S---------------S-----------S-------------
--------------------------S--S----SS--------------------------------------------
----------------------------------------S---------------------------------------
---------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S----------------
-----------S---------------S----------------------------------------------------
SS-------S---------------------SS-S-SSSSS-SSS------------------S----------------
-------------------------------------------------------S---------------SSS------
--------------------------------------------------------------------S-----------
------S----------------------------SS--------------S--S----S-S--------S---------
S---------------------------------------------------S---------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S----------------------S----SSSSSSSSSSSSSSS----
--------------------------SSSSSSSSS---------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S-------------S--------------------------
--------S----------------S---S----SS--SSS-SSS-----------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------S-------------
------------------------------------------------S--S---S------------S-----------
-----S-------------------------S------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S----------------------------------------------S--------------------
--------------------------------------------S------------------------S----------
------------------------S-------------------------------S-------------S---S---S-
-------S--------------S----S----S---S---------S------------S--------S----S------
------------S-----------S-------------S----------S--S------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_516
--------------------------------------------------------------------------------
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----------------AATGTTGCAGCGCGTCATAC--------------------------------------------
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>reverse_2272
--------------------------------------------------------------------------------
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-------------------------------TGAATCGGAGCAGCTGTACG-----------------------------
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---------------------------------------------------------
>forward_1675
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------GCTTGTCCACTCTGCAAAGC-----
--------------------------------------------------------------------------------
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---------------------------------------------------------
>reverse_3490
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------------------AAGGTGTACTGCCGATTCCG-----------
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---------------------------------------------------------
