>input_sequence_51300
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--------------------------------------------ATGCCTCAAACACTGCCGGACGACCTCCTTGAGGAG
GTCTTCCTCCGCCTCCCGCCGGGCGAGCCCGAGCACCTCCTGCGCGCTTCCCTCGCCAGCAAGCTCTGGCTCAGCCTCCT
CGCCAGCGCTCGCTTCCGTGGCCGCTACGGCGACCGCCACGGAGCTCCACCCATGCTCGGCTTCCTCTACTCCTGGCCTG
AGTACGCCGGTCCGGAGGACGAAGAACACAAGCCG---CACTTCGTCTCGACCACGAAGTTCGCCCCACGTGTCCCCGAC
GACGAGTGGAGCGATCTGGCCTACGCTGCGTGGGACTGCCGCCATGGCCTCGTCCTCCTCGGGGATAG------------
---GTGCAGGTCGCCCATGGGGTTC-------------------------------------------------------
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----------GTCGTCTGGGACCCCATGACGGGCTGCAGGTGGGAGCTCGACGTGCCGACGGGATACATGTCCACTAAAC
AACGGGGGGCC---GCTGCCGTGCTCTGTTCTATGGCTGGCTGCGACCACCGCGTGTGCCATGAGGGGTGCTTCCGGGTC
GTCTTCATCAGCCTGGACCCGAAAA------------------------ATGGTGTTGGTGTTGCACGCGCGGGCATCTT
CTCCATGGAGAAGGGTGGGGT---------------------GAGCAAGCCGTGCTCTCCTCTTCATCTTGACGATGGAG
CAACC---ATCGACCAAATGCCATCTGTCCTCGTCCAAGACGCACTTCACTTCATGGTTCGGCAA------CCTCAACCT
TATGTAGCACGAGCAATTCTCAAGTACGACTTGGGCTTTGATAGCTTATCGCTGATTCATGTGCCGCC---GGAGTTGAC
TACGACTGTTGGTAGCACCAT-------CCTCATGGCGATGGAGGATGGAAGTTTGGGGATTGCTGGGATTACACACGAG
GATAAGTTTATCCTCCACCTCTGGTCCAAGCAGATGGGTTCTGACGGAGTTGAGGCATGGACTCACCGTAGAGCTGTAGA
TCTCAAGGAATTCCTCCCCATTCAAAATACCAAGAAAAGAGTTATTAGACTGATTGGATCTATGGAGGGCAGTGATATCA
TTTTCGTTACCACAGATCTTGGCATCTACGAGATTAATCTCAAGTCATTACGGTGGAAGAAGCTATTGAAGAGAGAAAGG
---------TTCCGTGCCTTGATTCCGTATGTGAGTTTCTGCAATCCACAAGGTATAT------GTCCTTTCTTTTGGGT
TTTTGGAAACATTTCTTGTATAAATAACAATACATTAATCATGGCAACAAAATGTCATGTTTAATTAGATCAAAAGTTAT
ATATATTTGATGTTTCACTTAGT-ATAAACATAGATCTTGAAGTTTGGAATATGCGTATGCATGTGCC------------
---------------------------------------------------------------CGAACAAACTTTGAGTG
ATATGTAACACACAAATGTTACGCCTCCCTAATTGGCAATATTATATAACATCACTTCATCTCCTTTCTTGAATCACACA
CTA-ACAAATCTATATTTGCAGAAAGGGTGAGCACAAGCGATGCGGCTCATTGA--------------------------
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-----------------------------------------
>chr5D_1_TraesCS5D01G540400
TCCAACAGCTGCCCAAAAATAGGGCACCAAAACATCAAAACTAAACAAGATCATTGCAAATTCGATCCAAACATGCTAGC
ATTCGAAGTTTTAAACATGCAAACTTAAACATAGTTCGGGTACGATCATGCAAACACACATAGTTCAAGTACAAAATGCA
AACTTAGAATACCAATAACTACAGACAACTAATAGTGAGGAAGATCACTCCAGTCAATGTTGGAATGCACCACACCATGA
ACATTGTACACATATGTACATATACTCACCCCTATGAACGTGTGTATGTGTGCATATCATCTTGAGATTGATGAAATCAC
CATACGCGCCTCCGTAGACGACGAGAATATCTCCTCCACTGAACGAATATCATCAGGAAGTCTAAATAAATCCAGAAAAA
TGTGATTATCAGTGTCAACTCTAGTACAATTTAAACCCTGATGGGCTATTTTCACCACAAAGAGCCTTGACATCTGAGCT
TGGCTCATTTTGCTATTAAGATCATAGTTTGATGGACCTGATTATGTTACCACAACCCTGCATTTTCTAGGACTAGTTTT
TTTTTGGGGGGAATGCATTTTCTACTTGTTTACTCTCTTTTTTAGAAGCTCTTTGAGAAAAGTGGTATGCTACTCCTGTC
ATGACAGAGCACTAATTGTTGTTAATTGATTGGCTTCA----------ACGCAGCAGCAGTTAATTGCCTCCTCGTGCGC
GCACATGCTGAGCACAAGAAAGAAAAAGCTTGAAATATATACCTACCACCCCAACCATGCACACAC--------------
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-------------CACACCATGACCATAGTGGAGTTTCCTGCCTCTTTCCAAAGCACACCGCGTGCATCTCTCACTTTGC
TTTAATTAACTATTATTCCCTTAACACCGCGTATCTCTCTCGCTTTGCTTAACGGACACAT-------------------
-----------------GTATCCACTGGAGTACATCATATATATCCACACAGAGTCTCTCTGCAGCTAGCCTCCA-----
---TCTCCGTCCACTTTGACTTGAC---CCTCCACCGATCCACCATGCCTCAAACACTGCCGGACGACCTCCTTGAGGAG
GTCTTCCTCCGCCTCCCGCCGGGCGAGCCCGAGCACCTCCTGCGCGCTTCCCTCGCCAGCAAGCTCTGGCTCAGCCTCCT
CGCCAGCGCTCGCTTCCGTGGCCGCTACGGCGACCGCCACGGAGCTCCACCCATGCTCGGCTTCCTCTACTCCTGGCCTG
AGTACGCCGGTCCGGAGGACGAAGAACACAAGCCG---CACTTCGTCTCGACCACGAAGTTCGCCCCACGTGTCCCCGAC
GACGAGTGGAGCGATCTGGCCTACGCTGCGTGGGACTGCCGCCATGGCCTCGTCCTCCTCGGGGATAG------------
---GTGCAGGTCGCCCATGGGGTTC-------------------------------------------------------
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----------GTCGTCTGGGACCCCATGACGGGCTGCAGGTGGGAGCTCGACGTGCCGACGGGATACATGTCCACTAAAC
AACGGGGGGCC---GCTGCCGTGCTCTGTTCTATGGCTGGCTGCGACCACCGCGTGTGCCATGAGGGGTGCTTCCGGGTC
GTCTTCATCAGCCTGGACCCGAAAA------------------------ATGGTGTTGGTGTTGCACGCGCGGGCATCTT
CTCCATGGAGAAGGGTGGGGT---------------------GAGCAAGCCGTGCTCTCCTCTTCATCTTGACGATGGAG
CAACC---ATCGACCAAATGCCATCTGTCCTCGTCCAAGACGCACTTCACTTCATGGTTCGGCAA------CCTCAACCT
TATGTAGCACGAGCAATTCTCAAGTACGACTTGGGCTTTGATAGCTTATCGCTGATTCATGTGCCGCC---GGAGTTGAC
TACGACTGTTGGTAGCACCAT-------CCTCATGGCGATGGAGGATGGAAGTTTGGGGATTGCTGGGATTACACACGAG
GATAAGTTTATCCTCCACCTCTGGTCCAAGCAGATGGGTTCTGACGGAGTTGAGGCATGGACTCACCGTAGAGCTGTAGA
TCTCAAGGAATTCCTCCCCATTCAAAATACCAAGAAAAGAGTTATTAGACTGATTGGATCTATGGAGGGCAGTGATATCA
TTTTCGTTACCACAGATCTTGGCATCTACGAGATTAATCTCAAGTCATTACGGTGGAAGAAGCTATTGAAGAGAGAAAGG
---------TTCCGTGCCTTGATTCCGTATGTGAGTTTCTGCAATCCACAAGGTATAT------GTCCTTTCTTTTGGGT
TTTTGGAAACATTTCTTGTATAAATAACAATACATTAATCATGGCAACAAAATGTCATGTTTAATTAGATCAAAAGTTAT
ATATATTTGATGTTTCACTTAGT-ATAAACATAGATCTTGAAGTTTGGAATATGCGTATGCATGTGCC------------
---------------------------------------------------------------CGAACAAACTTTGAGTG
ATATGTAACACACAAATGTTACGCCTCCCTAATTGGCAATATTATATAACATCACTTCATCTCCTTTCTTGAATCACACA
CTA-ACAAATCTATATTTGCAGAAAGGGTGAGCACAAGCGATGCGGCTCATTGATGACAGAGAGTAGTTGAATATGCTTA
ATGGCACGAGGCCACTAACATAATTTCGAGGTGGTGGGGTCTTGTGATGAGTTATGCACTATTTAGTTGCTGGTA-TGTG
CAATGGTGTATGTTTTCTCACCTCGTTGGTGGTTTTCATGAGTGACCTTGTTAATTTCCTCGTGTTAGTGGAATGTGTAA
GTGGGTGAATGAATTGTCTTCGTAATGAACAGCTAATTTTTGTAGCATTAACTCTGATGTTTAATTTACTGGAAAATGCA
TTTGTAGACAATATCTTAGTGTTCCCATATTCTAATAAAATTGTACTACAATTTACACTCCCAGTTTTGATCAAATCTCT
AAATTCATCTCCCAAAAGGTACATAGCTCATTTCATTATGTGTTGCATCTTTTTTGCCTGCAGAATATGGTGCCCATGTA
GACATAGATGCCCCATGTAGTATGATGAACATATTCATATGTTCAATCATAGAGTGTAAGGCTATAGTGATCACTGCAAC
TGTCTTGGTTTATCATACTTTCCAAATGTTCACAGATTTTACTTAATTCTTGGACAAGCTCTTTTTTTGTTCAAAGGGTC
AACACACATTTCTCTAAACTTCAGTGCCTCTATATATGAAAGAGGTGTGGCTTTTTTCTAGATGCTTGGTAACTAATTAA
CTTTGTTCATCATTCATTGTTAAAACAAATTGCCTCTTCTTATCTTGGTGTT----------------------------
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-------------------------------------------------TGTGATGTGGAAATTTGTTTCTTTACATCTG
GATATATATTTATATC----------------------------------------------------------------
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-----------------------------------------------TTATTATTTTACTACACAGTCCTAGATAATTGC
TTGTTTTGTTGGTTGAGTATGTTGAGGAGGAGGATGCCATTCTAGTCAACAAGAAATATGGTCACCCGGAGGCAACTTGA
GTCCTGTAATTAACCTTGTCATCGGCAGGTCACTACTAGGAAAAGCCTACTAGTGGCGCACCAGTTTTTCCTACTAATGG
CGCACTACTGGTGCGCCACTAGTACCACGCCACTAGTATTTTT-------------------------------------
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>chr4A_339
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------------------CGACGGGAATATCTCCTCCACTGAACGAACATCACCAGGAAGTCTAAATAAATCCAGAAAAA
TATGATTATCAGTGCCAACTCTAGTACAATTTAAACCTTGATGGGCTATTTTCACCAGAAAGAGCCTTGCCATCTGAGCT
TGCCTCAGTTTGCTATTAAGATCATAGTTTGATGGACCTGATTATGTTACCACAACCCTGCATTTTCTAGGACTAGTTTT
TTC----GGAGAATGCATTTTCTACTTGCTTACTCCTTTTTCTTTCTTCTTTGAGA-AAAAGTGGTATGCTACTCCTGAC
ATGACAGAGCACTAATTGTTGTCAATTGATTGGCTTTAAGTTTAAGACACGCATCAACAGTTAATTGCCTCCTCGTGCGC
GCACATGCTGAGCAGAAGAAAGAAAAAGCTTTGCAATATA---TACCACCCCAACCATGCACGCACAGGCCCGGCCCGGA
TGGGGGGGCAGGGGGGGCGGCCGCCCCGGGCCCCCGAAATTGAGGGGCCCCCACGTTCGTCTGCTCTCTGTATCCAGCCC
GTGTGCTCTCTGTATCCAGCCCATGAGAAAAAACGATTCTCGCCTAATTTTGATGCAACAGCGAACATTAGCTGTGGGCA
AGTAAATCAGCGATTAGCTAAATTGGTGGAGTTTCTCAAGAAAAAAAAAGCTAAATTAGTGGAACTTCCGTTTCCCTCGC
GCAGGTCCGCGCATGACGACATGAGCGATCGACCTAGCGACATATCCCGCAAGCCCGAGGGCGACCCCGCCGCCGACACA
ACCTCCTCCCGCGGAGGCCTCCCCGATGATTTCTCGTGCAATGGCGGATGGAGAAATTTCATGTTCATCGCCCTGGAGAG
GAGTAACAACACCACCGGCCCTGGCAGGCAGTTTTAAACTACACAGATCAGGTTAGCATCTTCCTGATGCATCATCCAAC
GGAGCTAGCTAGATTGATATGTGACTAGTTGGTGGCAGAATTATTAGATATAGTGAATTAGCGGGGAGGAGTAGGACGTA
GTTGTCCTTCTGACTAATTTTTTTAATGCAATCCTTCTGATTAATTAATCTGGTCGTGTTGGAGATCGATGAAAGATGAG
GGGAAAGGATGCCTAGAATCTATGGGATAATGATAATAGGCAAGCTGAAATTAATTGGAGGATTCATAGTGGATTCAATA
TGCTTAACCCATCAAAAAAAGATTCAATATGATTACATGGCAAAATTAATTTTAATTGTTAAAAAAATTAATTTCTAGTG
TTGCAAATTATGAAGCTATTCTATCTGTGTGCCACCAAGGGCAGTTCAAATTACTTTTTTGTTTGCCAAACTGTGAAGTA
TACAATGCATGAAACTTCCCTATCAAAATCTTAGCAAAAGTGAGAAACAATTATTATAATAATATATAATTAGAACCTGG
AACTAGGTCAACCAGCTGGTTTTGCACTCCATGATAAAAAAATTAACAGCAATTCATGCTTAAAATTTATCTAAACATGC
ACATAATAATTATAATTTTGGATATATAAAGGGCCCCCGATTATATTTTCGCCCCGGGCCCCTGAAATCTCAGGAACGGC
CCTGTGCACGCACCACACCATGACCATAGTGGAGTTTCCTGCCTCTTTCCAAAGCACACCGCGTGCATCTCTTACTTTGC
TTTAATTAACTATTATTCCCCTAACACCGCGTATATCTCTCGCTTTGCTTAATGGACACATCACACATGCATGCCCGTTC
ACCTAACTCCAATCTAAGTATCCACCGGAGCT-------------CACACAGAGTCTCTGTGCAGCTAGCCTCCATGAGT
CCATCTCCATCCACTTTGACCCTCGCCTCCTCCACCGATCAACCATGTCTCAGACACTGCCGGACGACCTCCTTGAGGAG
GTCTTCCTCCGCCTCCCGCCGGGCGAGCCCGAGCACCTCGTGCGCGCTTCCCTCGCCAGCAAGCTCTGGCTCAGCCTCCT
CGCCGGCGCTCGCTTCCGTGGCCGCTACGCCGACCGCCACGGAGCTCCTCCCATGCTCGGCTTCCTCTACTCCTGGCCTG
AGTACGCCGGCCCGGAGGACGAAGAACACAAGCCG---CACTTCGTCTCGACCATGAAGTTCGCCCCACGTGTCCCCGAC
GATGACTGGAGCGATCTGGCCTACTCTGCGTGGGACTGCCGCCATGGCCTCGTCCTCCTCGGGGATAG------------
---GAGCAGGTCGCCCATGGGGTTC-------------------------------------------------------
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----------GTCGTCTGGGACCCCATGACGGGCTGCCGGTGGGAGCTCGACGTGCCGACGGGATACATGTCCACTAAAC
AACGTGGGGCC---GCTGCCGTGCTCTGTGCTGTGGCCGGCTGCGACCACCGCGCGTGCCATGAGGGACGCTTCCGGGTC
GTCTTCGTCAGCCTGGACAAGACAA------------------------ATGGTGTTGGTGTTGCACGCGCGGGCATCTT
CTCCATGGAGAAGGGTGGGGT---------------------GAGCAAGCCGTGCTCTCCTCTTCATCTTGCCGGTGGAG
CAACA---GTCGACGAAATGCCATCAGTCCTCGTCCAAGACGCACTCCACATCATGGTTCGGCGA------CCTCAAGCC
TATGTAGCACTAGCAATTCTCAAGTACGACTTGAGCTCTGATTGCTTATCACTGATTGATATACCGTC---GGAGGTGTC
TGCGACTATCGGCAGCACCAT-------CATCATGGCGATGGAGGACGGAAGTTTAGGGATTGCGGGGATGGCAAACACG
GATAAGTTTATCCTCCACCTGTGGTCCAAACAGATGGGTTCTGATGGAGTTGATGCATGGACTCACCGTAGAGCCATCGA
TCTCAAGGCATTCCTCCCCATTCAAAATACCAAGAAAAGAGTTATTAGACTGATTGGATCTATGGAGGGGAGTGATATCA
TTTTCGTGACCACGGATCTTGGCATCTACGAAATTAATCTCAAGTCACTGCGGTGGACGAAGCTATGGAAGAGAGAAAGG
---------TTCCGTGCCTTGATTCCGTATATGAGTTTCTGCAACCCACAAGGTATATCTATATGTCCTTTCATTTGTGA
TTC-GGAAACAATTCTTGTATCAATAGTAATATATTAAATATGGA---AAAAAATCATGTTTAATTAGGTCAAAAGTTAT
AT----TTGATTTTTCAATTAGTGATATACATAGATATGTGCGGTCAGCAATGTTGCATCCAAAGCATATTTAAAAGATT
GCTTGTTTCATCCGATGCAGGGTTATTTTTAATGTCTCAATTTCGAATACATATAGGGGTGTTCGCACAAACTTTGAGTG
ATATGTGACACAAAAATGTTACACCTTCCTAATTGGCAGTATTATAAAGTATAACTTCATGCATCTCCTTCTAGAATCAT
GTTGACAAATCTATATTTGCAGAAAGAGCGAGCACAAGCGATGAGGCGCATTGACGACCGTGAGTAATGGAATATGCTTA
ATACCATGAAGCCAGTACCATAATTTAGAGGCGTCGGGGTTGTG---TGAGTTATGTACTATTTAGTTCCTCGTTTTGTG
TAATGGTGTTTGTTTTCTCACCCT-TTGGTAGTTTTTGTGAGTGACCTTGATAATTTCCTCTTGTTAGTGGAATGTGTAA
GCAGATGAATGAATTATCTTTGTAATGAACCTCTAACTCGTGTAGCATTAACTCTGATGTTTAATTTATTTGAAAATGCA
TTTGTAGACAATTTTATTTGAAAATTACTTTCGAAAGCATTTTGAAGCACTGATTTTGTTTCAAAAATGTAATTTC----
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---------------------ATGATGAAAATTTTCAAGCTCTTGGAACATTTGTCAATGTTTGTTACAAAAAGAAAAT-
--------------------------------CAGATATTACTTATTTATTGATTGATTTTACTATTCATTTAAGCTCAT
TTGAACTCAGGCTGAGAAGGTGACTTTCCCTTGTGTGCCTGATTCTTACGTATGTATATCAGGGAAGAATCAACCAAGGC
GCTTGTGGTATAGGTGTGTGTTGCCATATACGCTCCATCGGCCAGAAGGAATTGGCCACCGCTAGCTTGTACGAGCGCAC
GTTGGAAAGTACTCGACGGTTGCGTCGTCAAGGTCGGGCATGTGCCAATAAGGTGTCTGGTTTCTTGTGTCGTTGTTGGC
TGATAGTGGAATCACAGGCAAATCTATGTTTGATGAAATGGTGAGTCCCTGTGATGCGGCTCGTTGATGACTGAGACTTG
AATCTATACTACTATTAAACAAGAAAACATACACTCAGGCGAACGAAAACTCCGCCAACCAGCAGACGAGAGATTCAATC
GGCAATAGACAGTGCCCAATTATTTATCAGTTTAATAAAATTCATTGTCCAACAATACATACAGAGATCGAAGTCATGTT
TCACCTTTTATGCTGACAGGAAAGGTATAAATAGGCATAGGGGCCTCGTTTAATGCACCCTATTAATTGAAAATTGGTAG
TGGGAATTAAAACATAGCCACCAGGAAAAAAAATAAACATACCCATTCATGTGAGAGGGCGTGATGGTCAACCAACTAAA
GGGGTGTTTGTTTTCAGGGACTTTTTTGTGTAGGGACTAGAAAAGGTCCCTCTTAGAGACTTTTTTACCAAACGGGAGGG
ACTTTTTAGGGACTAAACTAGGCATTTGGGACTAAATGAAGAAGACTCTTAAGAGAGTTTTTTTGGGACTTTTTCAACAA
TGCCCCTCCATGCACCCATTGGCCCGCCACCCCATGATGTTGTTTGATTGTTATTTTTCTATATAGTAGGGGCAACATGG
TCATTTAATAACCTCTAGCAAAGGACTAGGGACTTTTTAGTCTCTGGAAACAAACAGGGAGAGACTTTTTTAGGGACTAG
GGACTTTTTAGTTGGGACTAGAGAACCAAACACCACCTAATTCACTAATTGTCATATGTAACATAAGTCTAGCCCAGTAA
ACAAATCTTAGGTCAGTCATATATATGGGTATGTTTGGAAGTATTTTTATCTGATTGTCCATGTTCAATTTGATTTACCT
GCAAAGTTCCTGTTTCCGGTGACCATTTGCTCTTCTTTTGACTTATATAAATTGATTTCTGCATTTTATTTAATTGGAAA
AGCAATTCCAGCTAGGCTGGGCTGAATTCACAGGCCTAACATCTCTTTCTCAGGCCCAGCGCCCAACTCCTTTCTCTGTT
CCCCTGGCAGAACGTTGGTTCTTCTTCCTTGCTCACGCATGCACGCACAGAAACGGCAGCCTCGCGTGATTGCCGCCCTC
CCCTCCTCCCGTGATTCCCTCGCTAGTCTTATCTCCTCCCACATTCCCCTCCCCAAAGTCGAAACCCTCGCCTCCACAGA
TCGACCATGCCGCCGCCGCCATCGCTGCCGGACGAGCTCATCGAGGAGGTCTTCCTCCGCCTCCCGCCGGACGAGCCCGC
GTGCCTCGTGCGCGCCTCCCTCGCAAGCAAGCCATGGCTGGACCTCCTCTCTAGCCCCGCCTTCCGCGGCCGCTACCGCG
ATTTCCATGGAGCACCCCCCATGCTGGGCTTCCTTTACGCC
>chr4A_1013
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--------------------------------------------------------CTGCCGGAAGAGCTTCTCGAGGAG
GTCTTCCTCCACCTCCCGCCGGACGAGCCGGAGCACCTCGTGCGCGCCTCCCTCGCCAGCAAGCTCTGGCTCGGCCTCCT
CACCGGCGCTCGCTTCCGCGGCCGCTACCGCGACTTCCATGGAGCTCCCCCCATGCTCGGCTTCCTATATACCCTGCCCT
TCTTATGTTTCAGTCCGCCGTCGACAGACCCCCGCCCACACTTCGTCTCCACCACGAAATTCGCCGCACGCATTCCCGAC
GACCTCCGGGGGCACTCGGAGTACGATGCGCAGGACTGCCGCCATGGCCGCGTTCTCATCAGGTGTAAGGATCTGGGACA
CAGGAT---------------GCTC-------------------------------------------------------
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----------TTCATTTGGAACCCCATGACGGGCTGCTCCACGGAGCTGCGCCCGTTCACAGAATACATGGAGGCCGAAA
GCCATGG---G---GCTGCGGTGCTCTGCGCCCTCACCGGCTGTGACCACCGCGCGTGTCACGAGGGCCCCTTCCGGGTC
GTCTTTGTCTACCTGGACC------------------AGGATGAGGGCGAGGGTGTTTGTGTTGCATCCGCAGCCGTGCT
CTTGTCTGATTCTGATTCCAGCAAGCGGCCCAATGGCAAATGGTGTGAGCCGTGCTCTCGTCTTCATCTTGTGGACGATG
CATTCATTGAGGCAAGA---CCCCCAGTCCTCGTCCAAGACGCACTTCACTTCATGCTTAGGCACTATGAGGATTATCGT
CGTG------TAGGAATTCTCAAGTATGACTTGGGCTCTAACTGCTTATCACTAATTGACGCGCCATT---GGAGGGGCC
TGTCATTGACGATGCCGCCAC-------ACTCATGGCGATGGAGGATGACAGCTTGGGACTTGC---------ACATGTG
GAAAGGTTAACCCTCAATCTGTGGTCAAGGCAGATGGCTTCTCACGGAGTTGCCTCATGGACTCAGCGTGCAATCGTCGA
TCTTGGGAACCTTCTCCCCATTCAAAATCCCGAGGAAGATCTTGA---ACTGCTTGGATCTGTGGAGGGCAGTGATACTG
TGTTCGTGACCACGGACATGGGCATCTATGAGATTAATCTCAAGTCACTACGATGGAAGAAGCTGTGGAAGACAGACAAG
---------TTCTGTGCTTTGATTCCGTACATGAGTTTCTACAACCGCTGAGGTATATATC-------------------
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>chr5B_1013
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--------------------------------------------------------CTGCCGGAAGAGCTTCTCGAGGAG
GTCTTCCTCCACCTCCCGCCGGACGAGCCGGAGCACCTCGTGCGCGCCTCCCTCGCCAGCAAGCTATGGCTCGGCCTCCT
CACCGGCGCTCGCTTCCGCGGCCGCTACCACGACCACCATGGAGCTCCCCCCATGCTCGGCTTCCTATATACCCTGCCCT
TCTTATGGTCCAGTCCGCTGTCGACAGACCCCCGCCCACACTTCGTCCCCACCACGAAATTCGCCGCACGCATTCCCGAC
CACCTCCG---------GGAGTACGATGCGCAGGACTGCCGCCATGGCCGCGTTCTCCTCAGGTATAA------------
---GAT---------------GCTC-------------------------------------------------------
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----------TTCATTTGGAACCCCATAACCGGCTGCTCCACGGAGCTGCCCACCTCCACAGAATACATGGAGGCCGAAA
GCAGTGG---G---GCTGCGGTGCTCTGCGCCGTCACCGGCTGTGACCACCGCGCGTGTCATGAGGGCCCCTTCCAGGTC
GTCTTTGTCTACCTGGACC------------------AGGATGAGGGCGAGGGTGTTTGTGTTGCATCCGCAGCCGTGCT
CTTGTCTGATTC------CAGCAAGCGGCCCAATGGCAAATGGTGCGAGCCATGCTCTCGTCTTCATCTTGTGGATGATG
CATTCATTGAGGCAAGA---CCCCCGGTCCTCGTCCAAGACGCACTTCACTTCATGCTTAGGCACTATGCGGATTATCGT
CGTG------TAGGAATTCTCAAGTATGACCTGGGCTCTAACTGCTTATCACTAATTGATGCGCCATT---GGAGGGGCC
TGTCATTGACGATGCCGCTAC-------ACTCATGGCGATGGAGGATGACAGCTTGGGATTTGC---------ACATGTG
GAAAGGTTAACCCTCAATCTGTGGTCAAGGCAGATTGGTTCTCACGGAGTTGCCTCATGGACTCAGCGTGCAATCGTCGA
TCTTGGGAACCTTCTCCCCGTTCAAAATCCCGAGGAAGATCTTGA---ACTGCTTGGATCTGTGGAGGGCAGTGATACTG
TTTTCGTGACCACGGACATGGGCATCTACGAGATTAATCTCAAGTCACTACGATGGAAGAAGCTGTGGAAGACAGACAAG
---------TTCTGTGCTTTGATTCCGTACATGAGTTTCTACAACCGCTGAGGTATAT----------------------
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>chr1B_1013
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--------------------------------------------------------CTGCCGTACGAGCTCCTCGAGGAG
GTCTTCCTCCGCCTCCCGCCGGAGGAGCCCGCGCTCCTCGCGCGCGCCTCCTTCGCCAGCAAGTTCTGGCTCGGCCTCCT
CTCCGGCCCTCGCTTCCGCCGTCGCTACGGCGAGTTCCATGGAGCGCCCCCCGTGCTGGGGTTCCTTTGTTGCCGGCCTT
GTTCCATCTTCCCGGACGAGCAGGAGGAACCCGTGGCAAGCTTCGTCTCCACCACGAAATTCGCCGAGCGCGCTCCCGAC
GACGACGACCGTGGG------TACACTCCGTGGGACTGCCGCCATGGCCGCGTTCTCCTGGGGAATCGTTATAAACATGA
T---------------ATGGGGCTC-------------------------------------------------------
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----------ATCGTTTGGAACCCAATTACTGGCCGCCGGACGAAGCTGAAATC------------------GCCCGCAC
GCCATTG---GGTGGCCGCGGTGCTCTGCGCTGTGAGCGGCTGTGACCACCGCGCTTGCCATGAGGGCCCCTTCCGGGTG
GTCTTCGTCGGCCTGGACAGGAGCGATCATGATGACGATGATCATGATGACGATGATTGTGTCGCC--------------
------GGAGACGGCCGAGTG---------------------GAGCGAGCAGTGCCCTGGTCTTCATCTTACGGCTGATC
CATTCATCGTCAACCAATTGCCCCCTGTCCTCGTCGGAAACGCATTTCATTTCATGCTTGTGCAC------GATGATCTT
CGTG------TAGGAATTCTCAAGTACGACTTGGGTTCCAACTGCTTATCGCTGATTGACGGGCCACCACCGGAGGGGTT
TACCATTTGCCCTACT-------GCTGTCCTCATGGCGATGGCAGATGGCAGTTTGGGGTTTGC---------ACATGTG
GACAGCTTAACCCTCTGCCTGTGGTCAAGGCATACGGGTTCCGATGGAGCTGCGTCATGGGCTGAGCGTGCAATCATCGA
TCTCAAAAACCATCTCCCCATTCAAAATCCCGGGATAAGACTTA---GACCGACTGGATCTGTGGAGGGCAGTGATATCA
TTTTCGTGACCACAGACCTTGGCATCTACGAGATTAATCTCAAGTCACTACAGTGGAAGAAGCTATGGAAGAGAGAGAAC
GTCCGGTACTTCTTTGCTTTGATTCCGTACATGAGTTTCTACACTCCACAAGGTACAT----------------------
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>chr5B_1292
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------------------GCCTATGTTGTGTGGGGCTGCCGCCATGGCCTCGTCCTCCTCGGGGATAG------------
---GTGCAGATCGCCCATGGGCACTAGTAGAAAAAGAGGCTTCCGTCCAGCCCCATTAGTCGCGAAACTGTAGGAACCGC
GACTAATGAAGTCTTTAGTCGCGGTTCGGCAGATGAACCGCGACCAAATGCCTGGGCCCAGGGCGCTCGCGGGCTTTAGT
CGCGGTTGGCCAGGCCAACCGCGACTAAAGGTGCCCAAAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAAATATTAGTGTT
ACTAAATAATTATTGTTTTTTAAAACAATAGTTTCAAACTCAAACAGTGAAATGTGTCACTTCATGCTCAAGCAAAATTC
CTGAAGGTTAATAGGATTGACATCTTATTATTGTCAGGAAAACAACAAGTGCAGACTTGGAGCGTGGGAGAATAGAACCC
GGAAGTTAAGCGTGCTTGGGCTGGAGTAGTGAGAGGGATGGGTGACCGGTTGGGAAGTTAGATGATTTGGAATGATGAGG
GGTGATAAAAGAATAAATTGAGAAGTGATGAGGGGTGGTGATTAGAGACTAGAGGTTAAAATAATTCAGAAATTTGAAAA
AAATTTCAATTTGAAAAAAATTTCAATTTTTTTTTTCAAAAACCTGTGGCGGCCTTTAGTCGCGGTTAGCCACAAGAACC
GCGACTAAAGGTCCTTCGCCCACGTGGACGGGCCTTTAGTCGCGGTTCTTAAGCAACCGCGACTAAAGGGGGGGGCCTTT
AGTCGCGCCCGTCTGGTCGCGATTGCGCAACCGCGACTAATGGCAGTTGCGAACCGCGACCAAAGGCCTTTTTTCCACCA
GTGGAGGTTTGTCGTCTGGGACCCCATGATGGGCTGCTGTTGGGAGCTCGACGTGTCGGCAGGATACATGTCCACTAAAC
AATGTGGGGCG---GCTGCTGTGCTCTGTTCCGTGGCCGGCTGCGACCATCGCGCCTGTTATGAGGGGCGCTTCCAGGTG
GTCTTCATCACCCTAGACAATACAA------------------------ATGGTGTAGGTATTGCACGCGCGGGCATCTT
CTCCATGGAGAAGGGTGGGGT---------------------GAGCAAGCCGTGCTCTGGTCTTCATTTTGGTGGTGGAG
CAACA---ATCGACCAAATTCCATCGGTCCTTGTCCAAGACGCGCTTCACTTCATGGTTCGGCAA------TCTCAATCC
TATG----------------------------------------------------------------------------
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>chr5B_1593
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-----------------------------------------------AGCCGTGCTCTCGTCTTGATCTTGTGGATGATG
CATTCATTGAGGCAAGA---CCCCCAGTCCTCGTCCAAGACGCACTTCACTTCATGCTTAGGCACTAT--GGATTATCGT
CGTG------TAGGAATTCTCAAGTATGACCTGGGCTCTAACTGCTTCTCACTAATTGATGCGCCATT---GGAGGGGCC
TGTCATTGACGATGCCGCTACCCGCTATACTCATGGCGATGGAGGATGACAGCTTGGGATTTGC---------ACATGTG
GAAAGGTTAACCCTCAATCTGTGGTCAAGGTAGATAGGTTCTCGCGGAGTTGCTTCATGGACTCAGCGTGCAATCGTCGA
TCTTGGGAACCTTCTCCCCATTCAAAATCCCGAGGAAGATCTTGA---ACTGCTTGGATCTGTGGAGGGCAGTGATACTG
TTTTCGTGACCACGGACATGGGCATCTACGAGATTAATCTCAAGTCACTACGATGGAAGAAGCTGTGGAAGACAGACAAG
---------TTCCGTGCTTTGATTCCATACATGAGTTTCTACAACCGCTGAGGTATAT----------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS-----S-----------------------S----S---------------------------
-S------------S----------------------S-------------------S-----------S----------
--S----S------------------------------------------------------------------------
--SSSSS--S------------------S------SS----S-SSSSS--S-SS--S---------------------S-
----------------------S-------------S----------------S--S-----------------------
--------------S----------------SSS-SSSSSSSS-------------------S-----------------
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------------------------------------------------------------------------S-------
--------------------S-------------S-----------------S---------------------------
-------------------------S----SSSSSSSSSSSSSSS--------------S--------------------
--------S-----------SSSSS---------------S------S----S---------------------------
---------------------------------------S----------------------------------------
----S-------------------------------------------S-------------------------------
----------S---------------------------------------------------------------------
-----S--------------------------------------------------------------------------
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-------------------------------------S------------------------------------------
----S---------------------------S----S----------------S-------------S-----------
-------------------S--S---------------------------------------------------------
-----------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
----------S--------------------------S----S--------------S-----------------S--S-
---------S------------------------------------------------------S-----SS------S-
--------------------S-----------------------------------------------------S--S--
--------------------------------------------------------------------------------
-------S---------------------------------------S------------------S-------------
------------------------------S-----------------------------------------S----S-S
--SS-------S---------S----SS----S-----SS----SSSS----SS--------------S-----------
--SSSS-----S-----S---------S--------S-SSSS-S-SS-S-SSSSS-S--S--SSSSSS------------
-----------------------------------------------------------------S--------------
------S-----S---------S---S-----------S-------S-SS--S-------SSSSS-S---SS-SS-SSSS
S-S-----------------------S-S--------------S---S------S---S-S-----S-S-----------
--SS--S--S----S--S--------S----S-SS-----SS--SSS---------S-----------S--S--S-----
S--------S------------SSS-----S-----SS------------S----------S------------------
-SS-S----------S----S---------SS----S-SS----------------------------S-S---------
------------S-SS-SSSSSSSSS-SS---S--SSS-S--SS-SSSSSSSS-SSSS-SS--SSSS--SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS--------S--S----SSSSS-SSSSSSSSSS--SS-S-SS-S-SSSS-SS-SSSS-SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-------S--S---SSSS-SS-SSS-S--SS--S--SSSSSS
SSS-SSSSSSS--SSS--SS-S-S-SS-S--SSSSSSSSSSSSSS-SSS-SS-S-S-S-SSSS-SSSSS-S-SSS-SSSS
SS----SSSSS-SSSS-SSS-SSSSSS-SSS--SS-S--SSSSSSSS-SSS-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S--SSSS---S-SSS-S-S-SS--
S--S----S-SS---S----------------------------------------------------------------
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-------------------------------------------------S-------S---S-S---SSSS-SS-SS--S
-SS---SS-SSSS-SSSSSSSSS--SS---SSSS-SSS-S---SSSS--SS-S-S-SSSS-SS--SSSSSSSSSSSS-SS
-SS--S-SSSSSSSSSSS-SSSSSS-SSSS---S--SSSSSSS-SSSSSSSSSSSSS-S-S--SSSS-SSSSS-S-S-SS
SSS-S-SS-S-SS-SSSSS--SSSSSSS-SSSS-SSSSSSS-S-------------------------------------
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>forward_331
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-----------------------------------------------------------------------TGAAATCAC
CATACGCGCCT---------------------------------------------------------------------
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>reverse_4940
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-----------------------------------------------------------GCATGTGCCCGAACAAACTT-
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>forward_4100
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GTCTTCATCAGCCTGGACCC------------------------------------------------------------
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>reverse_6735
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--------------CTTGTCATCGGCAGGTCACT----------------------------------------------
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-----------------------------------------
