>input_sequence_51293
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---------------------------ATGGCTGACCAAGCCAAGCTTTCCCACCACAACCCCTATAGGGACCATGTGTT
CCATCGTGTCATCATCTCGGCACTCGTCCTGCTGCTGTCCTGCACGGCGGCGACCAGTGACCGGCAGCC------ACCAC
TGATCTCGCAGCTCGCCAAGGACCCCGAGACCTCCCTCTATACCATCTCCGTCAAGGCCGACAAGTCGCCGCTCCTCCTC
GACCTCGCCGGCTCGCTCGTCTGGTTGACGTGCCCGCCCTCGTCGGCG---------CACAGCACGGTGCCGTGCGAATC
CGACA---CGT---GCGCCGTGGCCAAACAGCAGTCCTCGCGTCGCTGCCGGTACGTGGACGGCGGCCGGTTCTGG----
--------------GAGAACCGCAAGCCGGGGTCGTCGTGGTGCGCTTGCGCTGCCCGCCCGCTCAACCCGGTCACCGGC
GAGTGCTCCACCGGCGATCTCACGAGCCTCACCATGAAGGTCAACACCACCAACGGCACCATGGAGCTGCGCCCGGAGGA
GTCG-------TTCGCCGTCGTCGGCGCGTGCGCGCCGGGCCGCCTACTGAGTTCGCTCCCCGCAGGCGCCGCCGGCGTC
GCGGGGCTCTCCCGGCGCTCGCTCTCGCTGCCGTCCCAGCTCGCGGCTCAGCGCGGCTTCGGACGCAAGTTCTCCCTGTG
CCTCCCCGCCTTCGCGACCTTCGGTGACACGCCGGTGTACCTGCCCACGCCG------GAGCGAGGCTTCATCGACTACA
CGACCTCCATCCCGTACACCCCGCTCCTGACAAACCCGGCGAACGCCGGC------GGATACTACATCCCCGTCAAGGGC
ATCTCCGCGTCGTGGCACGGGGCGAACGCGGCGGCGGCCCTGCCCCCCGGCGCGCTCGACATTGACGTCCGCACGGGCCG
CGGCGGCGTCGTGCTGAGCACGGCCACGCCGTACACGGTCATGCGGCCCGATGTGTTCCGCGCTTTCGCCAAGGCCTTCG
ACCACGCCATAATAAGGTACAGCACATATTAAATGCTTTCAACGCAAACCACCGCACCATTACAGAGTTCCT--GCTAAA
CTA---AGC----TCCATG---------ATGGGCGTCCGAAATGGCGTGC----AGAGGGAAGGT---------GAGCTT
CATGGAAAG---GGTGCCGGCGACGAAGCCGTTCGAGCTGTGCTACCACGGCGCGTTCCCGAT---GCTGAAGCGAGCTG
---GCCTCGACATGCCTTACATTAAGCTTGAGCTGGGCGACGGCGCCACGCGCAA---CTGGACA-CTGTTCAACGATAA
CTACATGGTGCCTGTGGACGGGGCGATGTGCGTGGGGATCCTGCCGATGGGGCCCGGCGGCATGCCGGTTGACGGCGAGC
CGGCGGTGGTGATCGGCGGGAAACAGCTGGAGAACAACCTGCTGGTGTTCGATCTGGAGAAACAGGTGCTCGGGTTCAGC
ATGCTGCTGAGCGTCCAATTGTCCGGCTGTCGAAGCTCCTATTTCTTCAGAAACTAA-----------------------
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>chr3B_1_TraesCS3B01G515000
CATAGATTTTTTTGTTTTTATTCATTTTTTGATTTTGTTTAGTTTTTTATTTTATTTTCTTCTGTAAGGATAACACTGAT
GTCAGTAATCCATTACTTTTTAGAAAACTCTTTTTTTTTGCAAATCTCACTATTATATGCTCATATTTTCATAATAATAA
TGCAAATTATATA----------TATGTATGTATATGTTTATATATGTATTGTATGCATGTATATAAAAGAAATATACAT
ATGTGTATACTCACTAACCGTTGTATGCCAATGTGTGTGAGATTTTTTTTAGCAAAGCCAATATGTGTGAGAGTGCTATT
CATTGCTCTTGTACAAAGGCTTGGCCAACAATATGCTAGAGCAGCCCGTAATCAATGTAAAAAAAA-----TAATAGACT
GGCTTGGCAG-------------------------------CGTTGGGCTTCTGGTGCTGCTGCTGCTACCGATCCGAAC
CACAAGCTTCACGAGTTCATTGAGCTGCCATAACTGGGCTGCCTAATTAGGCTCGACTGAAACAGAGTTTGGGGTCAATC
GAGTGACCTAAAATTCATTTTCAGACGATTGACCAGTAGCCAGTCTCAACCTTGTTTGCCGAGTGGCTAACTGACTATAA
GAAAACGCCCGACATAGGTAATCTTTGCCGCGTACCTTTCTTTTCTT---------TTTTTTGCACATCGTGTTTAGGTC
GGCTTTACCAAGTGTATTTTTTGTTGACACTCGGTTTAGGTGGCTGTTTCGGCAAACAGCCGAGCACTGGGCATGAAGCT
ATTTTCTGGTAGTGATTGGACCAAATAGAAACCGAAGCATGTCGGCACATTGATGCGAAGAGCTAGCCAAGGTTTAGATG
TCTTGACTTT------------ATATTGTCAACTCCTCGGTATCTGAAAACAACTGGAAAGATCGATGATGAAACCACTG
CTAATTCACGTTCCATGAACCATGATTCCAATATTGGTATAAATACAGTCGCCAACTCATTTCTTTCGGCATCAATCCAA
ACCATCTTCCCTAGCTAGCAATTAGAAATGGCTGACCAAGCCAAGCTTTCCCACCACAACCCCTATAGGGACCATGTGTT
CCATCGTGTCATCATCTCGGCACTCGTCCTGCTGCTGTCCTGCACGGCGGCGACCAGTGACCGGCAGCC------ACCAC
TGATCTCGCAGCTCGCCAAGGACCCCGAGACCTCCCTCTATACCATCTCCGTCAAGGCCGACAAGTCGCCGCTCCTCCTC
GACCTCGCCGGCTCGCTCGTCTGGTTGACGTGCCCGCCCTCGTCGGCG---------CACAGCACGGTGCCGTGCGAATC
CGACA---CGT---GCGCCGTGGCCAAACAGCAGTCCTCGCGTCGCTGCCGGTACGTGGACGGCGGCCGGTTCTGG----
--------------GAGAACCGCAAGCCGGGGTCGTCGTGGTGCGCTTGCGCTGCCCGCCCGCTCAACCCGGTCACCGGC
GAGTGCTCCACCGGCGATCTCACGAGCCTCACCATGAAGGTCAACACCACCAACGGCACCATGGAGCTGCGCCCGGAGGA
GTCG-------TTCGCCGTCGTCGGCGCGTGCGCGCCGGGCCGCCTACTGAGTTCGCTCCCCGCAGGCGCCGCCGGCGTC
GCGGGGCTCTCCCGGCGCTCGCTCTCGCTGCCGTCCCAGCTCGCGGCTCAGCGCGGCTTCGGACGCAAGTTCTCCCTGTG
CCTCCCCGCCTTCGCGACCTTCGGTGACACGCCGGTGTACCTGCCCACGCCG------GAGCGAGGCTTCATCGACTACA
CGACCTCCATCCCGTACACCCCGCTCCTGACAAACCCGGCGAACGCCGGC------GGATACTACATCCCCGTCAAGGGC
ATCTCCGCGTCGTGGCACGGGGCGAACGCGGCGGCGGCCCTGCCCCCCGGCGCGCTCGACATTGACGTCCGCACGGGCCG
CGGCGGCGTCGTGCTGAGCACGGCCACGCCGTACACGGTCATGCGGCCCGATGTGTTCCGCGCTTTCGCCAAGGCCTTCG
ACCACGCCATAATAAGGTACAGCACATATTAAATGCTTTCAACGCAAACCACCGCACCATTACAGAGTTCCT--GCTAAA
CTA---AGC----TCCATG---------ATGGGCGTCCGAAATGGCGTGC----AGAGGGAAGGT---------GAGCTT
CATGGAAAG---GGTGCCGGCGACGAAGCCGTTCGAGCTGTGCTACCACGGCGCGTTCCCGAT---GCTGAAGCGAGCTG
---GCCTCGACATGCCTTACATTAAGCTTGAGCTGGGCGACGGCGCCACGCGCAA---CTGGACA-CTGTTCAACGATAA
CTACATGGTGCCTGTGGACGGGGCGATGTGCGTGGGGATCCTGCCGATGGGGCCCGGCGGCATGCCGGTTGACGGCGAGC
CGGCGGTGGTGATCGGCGGGAAACAGCTGGAGAACAACCTGCTGGTGTTCGATCTGGAGAAACAGGTGCTCGGGTTCAGC
ATGCTGCTGAGCGTCCAATTGTCCGGCTGTCGAAGCTCCTATTTCTTCAGAAACTAAACACTAGTGGGTTTGCCAGCCGG
CTCGTTGTCCACCTTTTCAGCAGTTGTAAAAGTATGTGGGTTTGTCAGGCTGACATTCTACACACACACTATAGTCACTT
CAATTTCACTTGGACCGGTTGGAACTTTCACTGTACCTGTACTGTGTACTTGCAATAAACACGCATGTTTTTTACTTTCG
ACCTAAATGGACCCTTTATCTCTACACAATAGCTGTATGTAAGTCGCCCGAATTTGCAATTTGGGTCAGTTGATTTTTTG
AAGAAGAAGCAAGTTGGCCGGAGGCAAAGGAAGGAAGGAAGGAGCAGCCGCCGGAGATCTATCTTAGGGTGGCAGACTTG
TCGACGATCTGTCTTAGCGTGACAGGCTCGCCGACGATCTATCTTAGGGGT--------GTGGGGAGAGTGCAGGCTCGA
CGGAAAATTATGTTCCTCGCCAGGGTTAGAGGGATGGCCATGGATGGGCCAGGCGATCGGGCGGGGGGGAGGGGGGGTCA
GCGAGGTAGGCGCTGGAGCACCTCCGGCCGCGGGCAGCGACGGCAGGCGGTTTGTCGAAGAAGATGCACAGGAGATCTTG
GCTAGATATTAAAGAAAGAGATCCGGCCGTCCATTTTTCATCCAACGGCTTAAACCAAATCGATTAACCCAAAAAAAAAA
TCAGAGGACTGTGATATTGTCACTCTCTTATCTTTCTACTCGTCATTTTTTGCAAACATACAGGAGAGCTGCATACCATT
AATTAAGAAGACAGATAGTACAACCAGTGGCGGAGCCAAGATTTAAACTCTGTGTAGTCAATACAAAATTGTGTAGTAAA
ATACACGTATTTGTAATATTTTGTAAATATATTTTGCATAATTCTTGCTTGTATTACCAAAAACCTGTGTAGTCAGTTGA
CTACACTGCCTCTAAGGTAGTCCTGGCCATGGGCAGCCCGGCCCGGCCCGGCGGATGGCCAGGTCTACTCTAAGGTGGCC
TCGCCACTGAGTACAACATCAATGA
>chr3A_6
ATTTTTA---TTAGTTTTTATTCATTTTTTAATTTTGTTTTAGTTTTCATTTTCTTTTCTTTTGTAAGGATAACACTGAT
GTCACTAATCCATTACTTTCTAGAAAATTCGTTTTTTTTGCTAAT---------ATATGCTCATTTTTGCATAGTAATTA
TATAAATTATGTACGTATGTATGTATGTATGTATATGTTTATATATGTAATGTATGCATGTAT--AAAAGAAATATACAT
TTGTGTATAGTCACTAACCGTTGCATGCCAATATGTGTGAGATTTTTTTTAGCAAAGCCAATATGTGTGAAAGTGTTATT
CATCACTCATCTACAAAGGCTTGGCCAACAATATACTAGAGCAGCCCCTAATCAGTATAAAAATAATACTGTAATAGACT
GGCTTGGCAGTACTGGGATGCAGCTTGCGCACAAGACCCTGCGTTGGGCTTA------TGCTGCTGCTACCGATCAGAAT
CACAAGCTTCAGGAGTTCATTGAGCTGCCGTAACTGGGCTGCCCAATTAGGCTCGGCCGAAACAGAGTTTGGGGTCAATC
TACTCC---AAAATTCATTCTCAGTCCATTGACCAGTAGCCAGTCTCAACCTTGTTTGTCGAGTGGC--------TATCA
GAAGATGCTCGGCATAGGTAGTCTTTGCTGCGTACCGTGGCTTTGCCGAATGTTTCTTTTTCTCACACCCAGTTTAGGTC
GGCTTTGCCAAGTG--TTTTTGGTTGACACTCGGTTTATGTGAGCACATG------------------------------
---------------------------------------------------GATACGAAGAGCTAGCCAAGGTTTAGATG
TCTTGACTTTGTACACTTACGTATATTGTCAACTCCTCGGTATCTGAAAACAACTGGAAAGATCGATGATGAAACCGCTG
CTAATTCACGTTCCATGATTCCAAAACTA-------GTATAAATACAGTCGCCAACTCATTTCTTTCGGCATCAATCCGG
ACCATCTTCCCTAGCTAGCAAGTAGAAATGGCTGACCAAGCCAAGCTTTCCCGCCACAACCCCTATACGAACCATGTGTT
CCATCGTGTCATCATCTCGGCACTCGTCCTGCTGCTGTCCTGCACGGCGGCGACCAGTGACCGGCAACC------ACCAC
TGATCTCCCAGCTCGCCAAGGACCCCGAGACCTCCCTCTATACCATCTCCGTCAAGGCTGACAAGTCGCCGCTCCTCCTC
GACCTCGCCGGCTCGCTCGTGTGGTCGACGTGCCCGCCCTCGTCGGCG---------CACAGCACGGTGCCGTGCGAATC
CGACA---CGT---GCGCCGTGGCCAAACAGCAGTCCTCGCATCGCTGCCGGTACGTGGACGGCGGCCGGTTCTGG----
--------------GAGAACCGCGAGCCGGGGCCGTCGTGGTGCGCCTGCGCCGCTCGCCCGCTCAACCCGGTCACCGGC
CAGTGCTCCACCGGCGATCTCACGAGCCTCACCATGAAAGCCAACACCACCAACGGCACCATGGAGCTGCGCCCGGAGGA
GTCG-------TTCGCCGTCGTCGGCGCGTGCGCGCCGGGCCGCCTACTGGGTTCGCTCCCCGCAGGCGCCGCCGGCGTC
GCGGGGCTCTCCCGTCGTTCGCTCTCGCTGCCGTCCCAGCTCGTGGCTCAGCGCGGCTTCGGACGCAAGTTCTCCCTGTG
CCTCCCCGCCTTCGCGACCTTCGGCGACACGCCGGTGTACCTGCCCACGCCG------GAGCGAGGCTTCATCGACTACA
CGACCTCCATCCCGTACACCCCGCTCCTAACCAACCCGGCGAACGCCGGC------GGATACTACATCCCCGTCAAGGGC
ATCTCCGCGTCGTGGCACGGGGCGGACGCGGCGGCGGCCCTGCCCCGTGGCGCGCTCGACATTGACGTCCGCACGGGGCG
CGGCGGCGTCGTGCTGAGCACGGCCACGCCGTACACGGTCATGCGGCCCGATGTGTTCCGCGCTTTCGCCAAGGCCTTCG
ACCACGCCATAATAAGGTACAGTTCATGTTAAATGCTTTCAACGTAAACCACTGCACCAGTACAGAGTTCCT--GCAAAA
CTA---AGC----TCCATG---------ATGGGTGTCTGAAATGGCGTGC----AGAGGGAAGGT---------GAGCTT
CATGGAAAG---GGTGCCGGCGACGAAGCCGTTCGAGCTGTGCTACAACGGCGCGTTCCCGAT---GCTGAAGCGAGCTG
---GCCTCGACATGCCTTACATTAAACTTGAGCTGGGCGACGGCGCCACGCGCAA---CTGGACA-CTGTTCAATGATAA
CTACATGGTGCCAGTGGATGGTGCGATGTGCGTGGGGATCCTGCCGATGGGGCCCGATGGCATGCCGGTCGACGGCGAGC
CGGCGGTGGTGATCGGCGGGAAACAGCTGGAGAACAACCTGCTGGTGTTCGATCTGGAGAAACAGGTGCTCGGGTTCAGC
ATGCTTCTGAGCGTCCAATTGTCCGGCTGTCGAAGCTCCTATTTCTTCAGAAACTAAACACTAGTGGGTTTGCCGGCCAG
CTCGTTCTTCACCTTTTCAGCAGGTGTAAAAGTATGTGAGTTTGTCAGGCTGACATTCT--ACACACACTGTAGTCACTT
CAATTTCACTTGGACGGGTTAGAACTTTCACTGTATCTGTACTGTGTACTTGCAATAAACACGTATCTTTTTTACTTTCG
ACCTAAATGGACCCTTTATCTTTACACAATAGCTGTATGTAAATCGCCCGAATTTGCAATTTGGGTCAGTTGATTTTTCG
AAGAAGAAGCAAGTTGGCCGGAGGCAAAGTAAAGAAGGATGGAGCAACCGCTGGAGATCTATCTTAGGGTGGCAGGCTTG
CCGACAATCTATCTTAGGGTGGCAAGCTCGCCAACGATCTATCTTAGGGGTGTGGGCCCGTGGGGAGAGTGCAGGCTCGA
CGAAAATTTTTGTTCC----------------------------------------------------------------
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>chr3A_997
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-----------------------AGAAATGTCTGCCCGAGCCAAGCTTTTCCACCCTACTCCCAA---GAACCATGTGTT
TCATCGTGCCATCCTCTCGTCGCTCGTCCTGATGCTGTCATGCACGCCGGCGAGCAGCGAGCAAACCCCGCACAAACCAC
TGGTCACCAAGCTCGCCAAGGACCCCATCACCTTTCTCTACACCATCACCGTCAAGGCCGACAAGTCGCCGCTCCTCCTC
GACCTCGCCGGCTCGCTCGTCTGGTTGACGTGCCCGCCGCCGTCG------TCATCACACAGCAATGTGGCAAGCCAGTC
CGGTC---CGTGCGGGGGCGCGGCCAGCCAGCAGTGGCCACGCCGCTGCCCGCACGT------------------G----
--------------GAGCCGGG------------GTCGGGATGCGCCTGCGCGGG---------CAATCCGGCCACCCGC
GAGTGCTCCACCGGCGGCCTCACGAGCTTCGCGATGTCGGCTAACACCACCGACGGCGCCATGGAGCTTCCCCCGGAAGA
GTCG-------TTCGCCGTCGTCGGCGCGTGCGTGCCGGGCAGCCTGCTGAGGTCGCTCCCCGCGGGCGCCACCGGCGTC
GCGGGGTTCTCCCGGCGCCCGCTCTCGCTGCCATCGCAGCTCGCCGCCCAGCGCGGCTTCGGAGGTAAGTTCGCCCTGTG
CCTCCCCGACTTCGCGACCTT-----------------------------------------------------------
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>chr3A_999
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-------------------------AAATGTCTGTCCAAGCCAAGCTTTTCCACAGTACTCCCAA---CAACTATGTGCT
CCATCGTATTTTGGTCTCATCGCTCGTCTTGCTGCTGTCATGCACGGCGGTGAGTGGCCAGCAAGCCCCGCACAAACCAC
TGATCTCCCGGCTCGCCAAGGACCCCAACACCTCCCTCTACACCATCACCGTCAAGGCCGACAAGTCGCCGCTCCTCCTA
GACCTTGCCGGCTCGCTCGTCTGGTCGACGTGCCCGCCCTCGTCGGTG---------CACGGCACTGTGGCATGCGGGTC
CAGTAATTAGTGCGGCAGCGCGGCATGCCAGCAGTGCCCACGCCGCTGCCTGCATGTGGGCGGCGGCCAGTTAGGG----
--------------GAGTTAGG------------GTCGCGATGCGCCTGCGCCGG---------CAACCCGG-CACCCGC
CAGTGCTCCACCGCCGGCCTCACGAGCTTCCCGATGTTGGCCAACTCCACCGACGGCGCGATGGAGCTGCCCCCGGAAGA
GTCG-------TTCGCCGTCCTCGGCGCGTGCGCGCCGGACAGGCTGCTAAGGTCGCTCCCCGCGGGCGTCACCGGAATG
GCGGGGTTCTCCCGGCGGCCGCTCTCGCTGCCGTCGCAGCTCGCCGCGCAGCGCGGCTTCGGAGGTAAGTTCGCCCTGTG
CCTCCCCGTGTTCGCGATCTTCGGCGATTCGCCTGTCAACCTGTCGGCGCCATGGCAAGCGCCGGGCTACGCCGACTACA
CGACCATCATACTATACACCCCGCTCCTCACGAACCCGGCGAACCCCGCC------GGATACTACATCCCCGTCAAGGGC
ATCTCCGTGTCGTGGCACGGGGCCAACGCTGAGGCTGTCCTCCCTAGCGCCGCGCTCGACCTCGACACCGCGGCCGGCAC
GGGCGGCGTCGTGCTCAGCACGGCCACGCCCTACATGATCATGCGCCCCGACCTGTTCGACGCGTTCGCCAAGGCCTTCG
ACGACGCGATTACCAGGTACGC----------ATTCTTCGACCGCAAACCACGGCGGCGCCACAGGCAAGGAGTACTAAA
CTA---AGC----TCACTG---------ACGGCTGCCGGAAATGCCGTGC----AGGGGAAAGTTT---------ACGAC
GGTGGAGCGCGTGGTGCCGGCGCCGAAGCCATTCAAGCTGTGCTACGGCGGCGGGTTCCCGCT---GCTGAAGCGCCCGG
TGCTACCGGACCTGCCGTACATCGACCGGGAGCTGGGCGCCGGCGCCACGGGGAA---CTGGACGCCTGTTCAACAACAA
CTACATGGTGCACGTGGACGGGGCGTTGTGCCTGGCGATCCTTCCGACGGGTCCCGGTGGCATGCCGGTGGACGGCGAGC
CGGCGGTGGTGATCGGCGCGAAGCAGCTGGAGAACAACCTGCTGGTGTTCGACCTGGAGAAGCAGGTGCTCGGGTTCAGC
AAGCTGCTGGACTTCTCTTTGTCCAGTTGTATAAGCTCCACGTTCTTCAGGAACTAGACA--------------------
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>chr3A_999
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-------------------------AAATGTCTTCCCGAGCGAAGCTTTTCCACACTACTCCCAA---GAACCATGTGTT
CCATCGTGTCATCGTCTCGTCGCTCGTCCTGCTGCTGTCATGCACGCCGGCGAGCGGCGAGCAAACCCCGCACAAACCAC
TGGTCACCAAGCTCGCCAAGGACCCCATCACCTCTCTCTACACCATCACCGTCAAGGCCGACAAGTCGCCGCTCCTCCTC
GACCTCGCCGGCTCGCTCGTCTGGTCGACGTGCCCGCCGCCGTCG------TCATCACACAGCAATGTGGCAAGCCAGTC
CGGTC---CGTGCGGGGGCGCGGCCAGCCAGCAGTGGCCACGCCGCTGCCCGCACGT------------------G----
--------------GAGCCGGG------------GTCGGGATGCGCCTGCGCGGG---------CAATCCGGTCACCCGC
GAGTGCTCCACCGGCGGCCTCACGAGCTTCGCGATGTCGGCCAACACCACCGACGGCGCCATGGAGCTTCCCCCGGAAGA
GTCG-------TTCGCCGTCGTCGGCGCGTGCGCGCCGGGCAGCCTGCTGAGGTCGCTCCCCGCGGGCGCCACCGGCGTC
GCGGGGTTCTCCCGGCGCCCGCTCTCGCTGCCGTCGCAGCTCGCCGCCCAGCGCGGCTTCGGAGGTAAGTTCGCCCTGTG
CCTCCCCGATTTCGCGACCTT-----------------------------------------------------------
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>chr3D_999
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-------------------------AAATGTCTGTCCAAGCCAAGCTTTTCCACAGTACTCCCAA---CAACTATGTGCT
CCATCGTGTTTTCGTCTCATCGCTCGTCTTGCTGCTGTCATGCACGGCGGCGAGTGGCCAGCAAGCCCCGTACAAACCAC
TGATCTCCCGGCTCGCCAAGGACCCCAACACCTCCCTCTACACCATCACCGTCAAGGCCGACAAGTCGCCGCTCCTCCTA
GACCTTGCCGGCTCGCTCGTCTGGTCGACGTGCCCGCCCTCGTCGGTG---------CACGGCACTGTGGCATGCGGGTC
CAGTA---AGTGCGGCGGCGCGGCCAGCCAGCAGTGCCCACGCCGCTGCCTGCATGTGGGCCGCGGCCAGTTAGGG----
--------------GAGTCAGG------------GTCGCGATGCGCCTGCGCTGG---------CAACCCGGTC------
--------------------------------------GGCCAACTCCACGGACGGCGCGATGGAGCTGCCCCCGGAAGA
GTCGTTCGCCCTTCGCCGTCCTCGGCGCGTGCGCGCCGGACAGCCTGCTGAGGTCGCTCCCTGCGGGCGTCGCCGGCGTG
GCGGGGTTCTCCCGGCGCCCGCTCTCGCTGCCGTCGCAGCTAGCGTCCCAGCGCGGCTTCGGAGGTAAGTTCGCCCTGTG
CCTCCCCGTGTTCGCGATCTTCGGCGATTCGCCAGTCAACATGTCGGCGCCAGGGCAAGCGCCGGGCTACGCCGACTACA
CGACCATCATACCATACACCCCGCTCCTCACCAACCCGGCGAACCCCGCGCCCGCGGGATATTACATCCCCGTCAAGGGC
ATCTCCGTGTCGTGGCACGGGGCCAACACCGAGGCGATCCTCCCCAGCGCCGCGCTCGAGCTCGACACCGCGGCCGGCAC
GGGCGGCGTCGTGCTCAGCACCGCCACGCCCTACATGATCATGCGCCCCGACCTGTTCGACGCGTTTGCCAAGGCCTTCG
ACGACGTCATTATCAGGTACGC----------ATTCTTCGCCCGGAAACCACGGCGCCACTACAGGTCTA----------
--A---AGC----TCACTG---------ATGGCTGCCGGAAATGGGGTGC----AGGGGAAAGCG---TCCGATGACGAC
CGTGGAGCGCGTGCTGCCGGCGCCGAAGCCGTTCAAGCTGTGCTACAGCGGCGGGTTCCCGCT---GCTGAAGCGCCCGG
TGCTACCGGACATGCCGTACATCAACCTGGAGCTGGGCGCCGGTGCCACGGGGAA---CTGGACG-CTGTTCAACAACAA
CTACATGGTGCAGGTGGACGGGGCTTTGTGCCTGGCGATCCTGCCGACGGGGGCCGGCGGCATGCCGGTGGACGGTGAGC
CGGCGGTGGTGATAGGCGCGACGCAGCTGGAGAACAACCTGCTGGTGTTCGACCTGGAGAAGCAGGTGCTCGGGTTCAGC
GAGCTGCTGGACTTCTCCTTGTCCAGTTGTATAAGCTCCACGTTCTTCAGGAACTAGACA--------------------
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>chr3D_999
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-------------------------AAATGTCTGCCCGAGCCGAACTTTTCGACACTACTCCCAA---GAAGCATGTGTT
CCATCGTGTCATCGTCTCGTCGCTCGTCCTGCTGCTGTCATGCACGTTGGCGAGCGGCGAGCAAACCCCGCACAAACCAC
TGGTCACCAAGCTCGCCAAGGACCCCATCACATCTCTATACACCATCACCATCAAGGCCGACAAGTCGCCGCTCCTCCTC
GACCTCACCGGC-CGCTCGTCTGGTCGACGTGCCCACCCCCACCGTCGTCGTCATCGCACACCACTGTGGCATGCCAGTC
CGGTC---CGTGCGGCGGCGCGGCCAGCCAGCAGTGCCCACGCCGCGGCCCGCACGT------------------G----
--------------GAGCCGGG------------GTCGGGATGCGCCTGCGCCTG---------CAACCCGGTCACCCGC
GACTGCTCCACCGGCGGCCTCACGAGCTTCGTCATGTCGGCCAAGACCACCGACGGCGCCATGGAGCTTCTTCCGGAAGA
GTCGTTCGCCGT-----------------------------AGCCTGCTGAGGTCGCTCCCCGCGGGCGCCACCGGCGTC
GCGGGGTTCTCCCGGCGCCCGCTCTCGCTGCCGTCGCAGCTCGCCGCCCAGCGCGGCTTCGGAGGTAAGTTCGCCCTGTG
CCTCCCCGACTTCGCGACCTTGGGCTACGGCGACGTGCCTCCGGACCCGTACTT--------------------------
----------------CACCCCGCTCCTCACCAACCCGGTGAACGCTGCC------GGCTACTACATCCCTGTCAAAGGC
ATCTCCGTGTCGTGGCACGAGGTCGACGCTCCAGCGGCCCTGCTCCGCGGCGCGCTCGACCTCGACGCCGCCACCGGCCG
CGGCGGCGTCGTGCTGAGCACCGCCACGCCGTACATGATCATGCGTCCCGACGTGTTCCGCGCGTTCGCCAAGGCGTTCG
ACGCCGCCATTACTAGGTACTC----------ATCCTTTCATCGTGAACCACGTCGCCATCACTGGCAAGTAGGAGT---
--ACTAAGCTCGCTGATGG---------ATGGCTGCCGAAAATGGCGTACGTGCAGGGGGAAGAA---TCCGACGAGCAC
GGTGAAGCGGGTGGTGCCGGCGCCGAAGCCGTTCGAGCTGTGCTACAAGGGCGGGTTCCCGACGACGCTGAAGCGGCCGG
TGAGCCGCGACGTGCCGCGCATCAACCTGGAGCTGGGCGGCGGCGCCACGGGGAA---CTGGACG-CTGTTCAACGACAA
CTACATGGTGCAGGTGGACGGGGCGACGTGCCTGGCGATCCTGCCGGTGGGGCCCGGCGGCATGCCGGTGGACGGCGAGC
CGGCGGTGGTGATCGGCGGGAAGCAGCTGGAGAACAACCTGCTGGTGTTCGACCTGGAGAAACAGGTGCTCGACTTCCGC
ATG-----------------------------------------------------------------------------
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>chr3B_1048
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--------------------------------------------------------------------------TGTGCT
CCATCGTCTCATCGTCTCATCGCTCGTCTTGCTGCTGTCATGCACGGCGACGAGCTGTGAGCAAACCCC------ACCAC
TGATCTCCCGGCTCGCCAAGGACCTCAACACCTCCCTCTACACCATCACCATCAAGGCCGACAAGTCGCCGCTCCTCCTC
GACATCGCCGGCTCGCTCGTTTGGTCGACGTGCCCGCCGCCATCGGCG---------CAGAGCACTGTGGCATGCGGGTC
CGGTA---AGTGCGGCGGCGTGGCCAGCCAGCAGTGCCCACGCAACTGCCTGCACGT------------------GGACG
GCGGCCAGTTAGGAGAGTCAGG------------GTCGGGATGCGCCTGCGCCAG---------CAACCCGGTCAGCCGT
CAGTGCTCCACCGCCGGCCTCACGAGCTTCGCAATGTCGGCCAACGCCACCGACGGCGCGATGGAGCTTCCCCCGGAAGA
GTCG-------TTCGCCGTCCTCGGCGCGTGCGCGCCGGACAGCCTGCCGAGGTCGCTCCCCGCGGGCGTCACCGGCGTG
GCGGGGTTCTCCCGGCGCCCGCTCTCGCTGCCGTCGCAGCTCGCCGCCCAGCGCGGCTTCGGAGGTAAGTTCGCCCTGTG
CCTCCCCGTCTTCGCCATCTTCGGGGACTCGCCTGTGAACCTGACGGCGCCCGGGCAAGCGCCGGGCTACGTCGACTACA
CGACCGTCATACCATACACCCCGCTCCTCACCAACCCGGCGAACCCCGCC------GGATACTACATCCCCGTCAAGGGC
ATCTCCGTGTCGTGGCACGAGGCCGACGCCCAGGCGGTCCTCCCCAGCGCCGCGCTAGAGCTCGACCCCGGCGCCGGCAC
CGGCGGCGTCGTGCTCAGCACCGCCACGCCCTACATGATCATGCGCCCCGACGTGTACGAACCGTTCGCCAAGGCCTTCG
ACGTCGCCTTTACAAGGTATATACGCTACGCATTCGCCGCAAGGGC------------------TTGTACCT--CCTGAA
CAT---AGCTTGTTGACGT---------ATGGCTGCCGAAAATGGCGTGC----AGGGGGAGGAATGTTCCGGCGACCTC
CGTGGAGCG---GGTGCCGGCGCCAAAGCCGTTCGAGATCTGCTACAATGCCGGGTTC---ATGAGGCTGAAGCGGCCGT
CGGCCTACGACGTGCCTCGCATCCAGCTAGAGCTGGGCGCCGGCGCCACGTGGAAGAACTGGACG-CTGTACGGCGACAA
CTACCTAGTGAAGGTGGACGGGGCTTTGTGCCTGGGGATCCTGCCGACGGGGCCCGGCGGCATGCCAGTCGACGGCGAGC
CGGCGGTGGTGATCGGCGCGAAGCAGCTGGAGAACAACCTGCTGGTGTTCGACCTGGAGAAGCAGGTGCTCGGGTTCAGC
ATGCTGCTGGACTTCGCGTTGTCCAGTTGTACAAGCTCCAACTTCTTCAGAAACTAGACA--------------------
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>chr3A_1048
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--------------------------------------------------------------------------TGTGCT
CCATCGTATCATCGTCTCATCGCTCTTCTTGCTGCTGTCATGTACCGCGGCGAGCGGCCAGCAAGCCCCGTACAAGCCAC
TCATCTCCCGGCTCGCCAAGGACCTCAACACCTCCCTCTACACCATCATCATCAAGGCCGACAAGTCGCCGCTCCTCCTC
GACCTCGCCGGCTCGCTCGTCTGGTCAACTTGCCCGCCG---TCGGCG---------CAGAGCACTGTGGCATGCGGGTC
CGGTA---AGTGCGGCAGCGCGGCCAGCCAGGAGTGCCCACACCGCTGCCTGCACGT------------------GGACG
GCGGCCAGATAGGAGAGTCAGG------------GTCGCAATGCGCCTGCGCCGG---------CAACCCGGTCACCCGC
CAGTGCTCCACCGCCGACCTCACGAGCTTCGCGATGTCGGCCAACGCCACGGACGGCGCGATGGAGCTTCCTCCTGAAGA
GTCG-------TTCGCCATCCTCGGCGCGTGCGCGCCGAACAGCCTGCAGAGATCGCTCCCCGCGGGCGTCACCGGCGTG
GCGGGGTTCTCCCGGCGGCCGCTCTCGCTGCCGTCGCAGCTCGCCGCTCAGCGCGGCTTCGGAGGTAAGTTCGCCCTGTG
CCTCCCCGTGTTCGCCATCTTCGGGGACTCGCCTGTGAACCTGACGGCGCCCGGGCAAGCGCCAGGCTACGTCGACTACA
CGACCATCATACCATACACCCCACTCCTCACCAACCCGGCGAACGCCGCC------GGATACTACATCCCCGTCAAGAGC
ATCTCCGTGTCGTGGCACGAGGCCGACGCCCAGGCGATCCTCCCCAGCGGCGCGCTCGAGCTCGACCCCGGCGCCGGCAC
CGGCGGCGTCGTGCTGAGCACCGCCACGCCCTACATGATGATGCGCCCCGACGTGTACGAGCCGTTCGCCAAGGCCTTCG
ACGACGCCTTCACAAGGTATATACGCGACGCATTCGCCGCAAGGGCAAGGTAAATCAC----CATTGTACCT--ACTGAA
CAACTGAGCTATTTCACGT---------ATGGATGCCGGAAATGGCGTGC----AGGGGGAGGAATGTTCCGGCGACCTC
CGTGGAGCG---GGTGCCGGCGCCGAAGCCGTTCGAGATCTGCTACAACGCCGGGTTT---ATGAGGCTGAAGCGGCCGT
CGGCCTACGACGTGCCTCGCATCCAGCTAGAGCTGGGCGCCGGCGCCACGTGGAAGAACTGGACG-CTGTACGGCGACAA
CTACCTGGTGAAGGTGGACGGGGCTTTGTGCCTGGGGATCCTGCGGATGGGGCCCGGCGGCATGCCGGTGGACGGCGAGC
CGGCGGTGGTGATCGGCGCGAAGCAGCTGGAGAACAACCTGCTGGTGTTCGACCTGGAGAAGCAGGTGCTCGGGTTCAGC
ATGCTGCTGGACTTCGCCTTGTCCAGTTGTACAAGCTCCAACTTCTTGAGGAACTA------------------------
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>chr3D_1048
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--------------------------------------------------------------------------TGTGCT
CCATCGTATCATCGTCTCATCGCTCGTCTTGCTGCTGTCATGTACGGCGGCGAGCGGCCAGCAAGCCCCGTACAAGCCAC
TCATCTCCCGGCTCGCCAAGGACCTCGACACTTCCCTCTACACCATCACCATCAAGGCCGACAAGCCGCCGCTCCTCCTC
GACCTCGCCGGCTCGCTCGTCTGGTCAACTTGCCCGCCG---TCGGCG---------CAGAGCACTGTGGCATGCGGGTC
CGCTG---AGTGCGGCGGCGCGGCCAGCCAGGAGTGCCCACGCCGCTGCCTGCACGT------------------GGACG
GCGGCCAGTTAGGGGACTCGGG------------GTCGAGTTGCGCCTGCGCCGG---------CAACCCGGTCACCCGC
CAGTGCTCCACCGCCGGCCTCACGAGCTTGGCGATGTCGGCCAACGCCACCGATGGCGCGATGGAGCTTCCCCCGGAAGA
GTCC-------TTCGCCATCCTCGGCGCGTGCGCGCCGGACAGCCTGCCGAGGTCGCTCCCCGCGGGCGTCACCGGCGTG
GCCGGGTTCTCCCGGCGCCCGCTCTCGCTACCGTCGCAGCTCGCCGCGCAGCGCGGCTTCGGAGGTAAGTTCGCCCTGTG
CCTCCCCGTGTTCGCCATCTTCGGGGACTCGCCTGTGAACCTGACGGCGCCTGGGCAAGCGCCGGGCTACGTTGACTACA
CGACCGTCATACCATACACCCCGCTCCTCACCAACCCGGCGAACGCCGCC------GGATACTACATCCCCGTAAAGAGC
ATCTCCGTGGCGTGGCACGAGGCCGACGCCCAGGCGATCCTCCCCAGCAGCGCGCTCGACCTCGACCCCGGTGCCGGCAC
CGGCGGCGTCGTGCTCAGCACCGCCACGCCCTACATGATCATGCGCCCCGACGTGTACGAACCGTTCGCCAAGGCCTTCG
ACGACGCCTTCACAAGGTATATACGCTACGCATTCGCCGCAAGAGCAAGGTATATCAC----CATTGTACCA--ACTGAA
CTG---AGC----TTGTTGACGTATGGCATGGCTGCCGGAAATGGCGTGC----AGGGGGAGGAATGTTCCGGAGACCTC
CGTGGAGCG---GGTGCCGGCGCCGAAGCCGTTCGAGATCTGCTACAATGCCGGGTTT---ATGAGGCTGAAGCGGCCGT
CGGCCTACGACGTGCCTCGCATCCAGCTAGAGCTGGGCGCCGGCGCCACGTGGAAGAACTGGACG-CTGTACGGCGACAA
CTACCTAGTGAAGGTGGGCGGGGCTTTGTGCCTGGGGATCCTGCCGATGGGGCCCGGCGGCATGCCGGTGGACGGGGAGC
CGGCGGTGGTGATGGGCGCGAAGCAGCTGGAGAACAACCTGCTGGTGTTCGACCTGGAGAAGCAGGTGCTCGGGTTCAGC
ATGCTGCTGGACTTCGCGTTGTCCAGTTGTACAAGCTCCACGTTCTTCAGGAACTA------------------------
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>SNPs
SS-SSSSSSS--S-----------------S---------SSS----S-----S-------S------------------
----S--------------S-------S--S----------S---SSSSSSSSS----------S---S----S----S-
-SS-------S--------------------------------------S-------------SS---------------
S--------S-------------S--------S-------------------------------------S----S----
---SS---S-S-----------------------S------------S------S-S------S----------------
---------------------------------------------------SSSSSSS-----------------S---S
-----------S-----------------S-------------S-----------S-S----------------------
S-S-SSSSS----------S----S-S-------------------------------S--------SSSSSSSS---S-
---S-S--S--S--------S-------S-------S-SSS---SSS--------------SS----S-SS---------
------S-------SS-----S----------------S---SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-------------------------
----------------------------------------------------------------------------S---
------------------SS-SSS-SSSSSSSSSSS------------------------------------------SS
---------------------S---------------------------------------------S-S----------
------------------------------------------------------------------S-------------
-------S------------------------------------------------------------------------
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-----------------------S--------S-------------S--------S------------------------
----------------------------------------S---------------------------------------
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------------------------S-------------------------------------------------------
----------------------------S--S------------------------------------------------
----------------------------------------------S---------------------------------
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----------------------SS----------------------------S---------------------------
---------------------------------S---S------------------------------------------
----------------------------------------------S---------------------------------
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------------S--------------------------------------------------------S----------
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--------------------------------------------------------------------------S---S-
------S-S--------------S--------------S--------------------SS---------S---------
---------------S----S--------------S---------------------------S--S-------------
---------------------S--------------------S-----------------------------------S-
-----------------------------S--S------S------S----S-----------------------S----
S----S----S------S---S--S-------S-----------------------------------------------
--S---S--S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS
>forward_681
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---------------------TCTTTGCCGCGTACCTTTCT---------------------------------------
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>reverse_2639
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------------------------------------------------------------------------------GG
CTCGTTGTCCACCTTTTC--------------------------------------------------------------
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