>input_sequence_51242
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-----------------------------------------ATGCGATGCAGCCTGTACAGTACCCCCACAACCGCACCA
CC------------TCGTCCTCGTCCCCGTGTCTTCTTCTTCCTCTCGTCTAGTGTTGGCTTCTGGCTTTGGCCTTGGCT
AGCTGAGGCTGAGCTTCTTCCT-----CCCTCCTTCCCTCCCTCTAAAGACCAGGAAACTGAAGGTAGCTGGGCTGCGGG
TCTGGCAATGCCGCCACCCAGGGGGAGCCGGCCGGCAGGGTGCAACGGCGGATCTATGCTACGGCTGGTCGTCGTCGCCT
CCCTCTGCTGTGGTTGCTTCGTCGTCGGGCGCTGGGGGAGCGGCGTCCTCCCTTCGGGTAAGCGATGAGCTGAGCTAGCG
----GGTGTGCGTTCCCTTGTATTGATCCGTGTTGGCAAAGATCTCTTCATCTTGTGCGAGTTAGTGCTGGTTCTTGGTT
TCTTCCCTTCTCTTTCTTTTCTGGTTGCTACAGC-----TACAGATCTGAGAAGAGAGCGTACAGCGTAGTATCAATATC
ATACACTTGTTTTTTGGAGCC------------------------------------------TCTCTATGATGATGATG
CAAGGTGCTGTAGTGTGTTGTTAACAAGTTTCAGTTTCCTTTCGCTCAACAGATTCTGGGGGGATGGCAGGAGCAGCGAT
CTACGCCGGTGATCTGGTGAGTTTGATCCATCTTCTTATGTTGAGTCTTGAGTGTTATAAGCTCTAGAGCGTTCCCCTGC
TAGCTTAGCTTCTCCGTTCATGTAAGAAGAA---------------------TCTGTGGAGAGCAAAGCAAACAAAGATG
CCATCCATCCTAGCTAGATGTCGCAAGCTTTCATGTTTGGCTTCGGCCGATGCGTCTGACAAAGGCACGAAGCCAGATCA
CACGATTGTGA---CTTGCGCAACGATAATCCACCTGGATGCGTCAAAATTAAGGACGCGGACCTTGGCTAGCTAGGGCC
AGCGCCGCCGTCTCGTCGGTGTCGCTCGCTGGTCCCGTCGCCGGCCGCGGACAGCGACCTCCAGCCAGCCAGCTCACGGC
GGCGTACGGCGCACTTGCTAGGCTGCTCGTGCTAGCTTCCGACAACCCTTCCACGGCGCGCGTTGGGGACCAGACGTCGC
CGAGGTAGCGACCAGACGTCGTCGCTGCC----CGTACAACTTTTGCGTAGCAGCACATTAACGCCGCGCGCACGGCCGG
GCGCTCGGACCACACGCGCACGTACTACGT---GCTTGATTGATTGCGCGGACGCGATGTTTTCACTCGTGAACTAACGA
GCAGTTTTCATTGGTGTCGCAGGAGGGCTACC---ATGGGGGCGGCAGGCGGCGGCTGCTGGCCGGGGGCCCCGGCCCCG
GGTCGCACCCGCCGCGGTGCACGTCCAAGTGCGGCAGCTGCAGCCCGTGCGTGCCCGTGCACGTGTCCGTGCCGCCGGGC
GTGCTGGTCACCACGGAGTACTACCCGGTGGCGTGGCGCTGCAAGTGCCGCGACCGCCTCTACATGCCGTGA--------
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>chr1B_1_TraesCS1B01G309600
AACGCTCTCATGTCATATCCCTCTTGAGGACGTCATTTTTGGAGGTATGCATAGAATTGAGGGACCAGTGGACGACATCT
GAGTGGCGTTCCATGTGACGCATCGACGACGTGGAGTCTCTGCGGCGTGGCACGGTAGGGCCTCGGCGACGGATGTATAG
TGATGGACGCACGTAGGGAGGAGGTGTTGTCTGGCGCCGTGGTGGCGTCAACAGCAGGCCTGGCAAGGTCGATGCGTTAG
TATCTGCTCTGAAGATGGATCGATGAAATACGACGGCGACGACCTATGAGAGTGTGTCGGACCAGTTTGTGCCCCAGAGC
TGGTGTGTGGCTTGGTGCGGCCTCCAACTTTAGATGTTATGCTTAGGTTTTTTGATTTGAGGCAATCTTAAGGGCCGCTC
GCGCGACCGATCTGGACACGATGTCTGCATCCCTTCGTAACTGGATAGGAGTAGCGACCGTTATTGCCTAGATGGCGGCT
TCAGATGTATTGACTTATTACTTTGTAATTTTTTAAAATAATTAATAAAATGACTGCATACATCTTTAGAAGCCGTGGGT
CATTTTCTTAAAAAAGAGAAAAGGCAAAGCACCCCCTTTTACCAGCGACTACACTTACCTGTATGATACCCTCCCGTGAA
AAGAACATGAACGGTGGCCACAAGTCCGTCCCTCTTTTTACCGGCGTCCGGAGCTCCATCCCGTCTTTGTAGGTCAGCAC
TGCAGAGCTACGTACTTAGTAGAAACCTTGTAGGTAAGCAGAAGTGGTATGGTACGGCACACGCCAAGATTCAAAGCCGT
ACATGTAGTATACGTGTAGGTGAACGCACATGGCGTACGCCGTACTTTGTGCGCGCCCGATATTAAAGTTAGCGACCGCG
CCTGCCTCCCAGCCAGCTACCGGGGGTGTGCATACATGCAGCATG-CAGCCATGGGTGGCCACTGACTGACAGTGTCGAC
TCCGCATATATAACAGCTGCTTAGAGGAGCTGTGCTCCGAGATGCGATGCAGCCTGTACAGTACCCCCACAACCGCACCA
CC------------TCGTCCTCGTCCCCGTGTCTTCTTCTTCCTCTCGTCTAGTGTTGGCTTCTGGCTTTGGCCTTGGCT
AGCTGAGGCTGAGCTTCTTCCT-----CCCTCCTTCCCTCCCTCTAAAGACCAGGAAACTGAAGGTAGCTGGGCTGCGGG
TCTGGCAATGCCGCCACCCAGGGGGAGCCGGCCGGCAGGGTGCAACGGCGGATCTATGCTACGGCTGGTCGTCGTCGCCT
CCCTCTGCTGTGGTTGCTTCGTCGTCGGGCGCTGGGGGAGCGGCGTCCTCCCTTCGGGTAAGCGATGAGCTGAGCTAGCG
----GGTGTGCGTTCCCTTGTATTGATCCGTGTTGGCAAAGATCTCTTCATCTTGTGCGAGTTAGTGCTGGTTCTTGGTT
TCTTCCCTTCTCTTTCTTTTCTGGTTGCTACAGC-----TACAGATCTGAGAAGAGAGCGTACAGCGTAGTATCAATATC
ATACACTTGTTTTTTGGAGCC------------------------------------------TCTCTATGATGATGATG
CAAGGTGCTGTAGTGTGTTGTTAACAAGTTTCAGTTTCCTTTCGCTCAACAGATTCTGGGGGGATGGCAGGAGCAGCGAT
CTACGCCGGTGATCTGGTGAGTTTGATCCATCTTCTTATGTTGAGTCTTGAGTGTTATAAGCTCTAGAGCGTTCCCCTGC
TAGCTTAGCTTCTCCGTTCATGTAAGAAGAA---------------------TCTGTGGAGAGCAAAGCAAACAAAGATG
CCATCCATCCTAGCTAGATGTCGCAAGCTTTCATGTTTGGCTTCGGCCGATGCGTCTGACAAAGGCACGAAGCCAGATCA
CACGATTGTGA---CTTGCGCAACGATAATCCACCTGGATGCGTCAAAATTAAGGACGCGGACCTTGGCTAGCTAGGGCC
AGCGCCGCCGTCTCGTCGGTGTCGCTCGCTGGTCCCGTCGCCGGCCGCGGACAGCGACCTCCAGCCAGCCAGCTCACGGC
GGCGTACGGCGCACTTGCTAGGCTGCTCGTGCTAGCTTCCGACAACCCTTCCACGGCGCGCGTTGGGGACCAGACGTCGC
CGAGGTAGCGACCAGACGTCGTCGCTGCC----CGTACAACTTTTGCGTAGCAGCACATTAACGCCGCGCGCACGGCCGG
GCGCTCGGACCACACGCGCACGTACTACGT---GCTTGATTGATTGCGCGGACGCGATGTTTTCACTCGTGAACTAACGA
GCAGTTTTCATTGGTGTCGCAGGAGGGCTACC---ATGGGGGCGGCAGGCGGCGGCTGCTGGCCGGGGGCCCCGGCCCCG
GGTCGCACCCGCCGCGGTGCACGTCCAAGTGCGGCAGCTGCAGCCCGTGCGTGCCCGTGCACGTGTCCGTGCCGCCGGGC
GTGCTGGTCACCACGGAGTACTACCCGGTGGCGTGGCGCTGCAAGTGCCGCGACCGCCTCTACATGCCGTGACCACCGGC
CGCCGCTACATGCAGCTACCGCGCGTCGGCGGCCTCGGTCGAACGTCCGGCGGCCACAAGATGACGCAGC----AGCGTC
CGCCGCCCGGGCCGGCCGC-----------------ATACGTACGTACTGTGCC------------------GCACCGTC
AGTGTACATGTATGGCAGTGAGTGACAGACATGGGTGGTGCTGGAGTGATGGATGCACGTGGTGGGCTACCGTGGCATGG
CAGGGCAGGGCAGGGCCGGGCCGGCCTGCATGTGTAGCTGTGGACGGTGCAGCTGTGCCCTGGAGGAGTGTGGACGTGGT
GTGGCAGCACCGGCGCCATGGACCTACC--GGGCGGTGGCGCAGGCAGGCAGCTCCCCCAGGCGCCTCGACCTCGTTGCA
TGATTTTCGTGCGTGCCATTCAGTCATTCTTAGGCACTGAAATATACTACCACATGGCATTTTCTTTTCTCTTATTTCAA
TTTTAGTAGGAGTGTTTCGCTATTTTAGTAGGAGTATTTCGCTATTTT-GTGTTGGATCCATCAGTCATCACTTTCTTTG
TGGGGGAATATCCTTCAACAATT---CTACAGTGTACGTAATAATAATACTGATATAAATTATAACGTGATGTACTTGAT
GAGGAAGACGACGAGGCTCGTCAACAGCGCGATTGTGCAGTGTTTCCGACTTCATTTATTCTTGTCTGGGAGGACATGCA
TGTCCTGAAGCGGCCAGCGATTCATGTGCCCACACTGTGCGTGCAT-CATCTTGAAACCTTGGGACACAAAAATAAAGAT
ACCCTCCCCGCAAAAAAAATAAATAAATAAAGATACCCTGGAACATCTTGCCAAGTGCCCCAAGCAGC--AATAAGAAAA
GGTTGTTCAA-CTAAACAAAATTGAGTATCAACACAATGCTAAACATAACCAGATTATGGAAATCCTAGTACTATTTAGC
TTCCAATTTTTTCCCATTTCAGCCACGATGTACCCTGCGTTAGATTTTACACTTTTGCTATTTCACATCTAGATGTGAAA
T
>chr1D_726
AGCTAGAGTACTTAGT----------------------------------------------------------------
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-------------------TAGAAACCTTGTAGGTAAGCAGAACTGGCATGGTACGGCACACGCCAAGATTGGAAGCCGT
ACAGGTAGTATACGTGTAGGTGAACGCACATGGCGTACGCCGTACTTTGTGCGCGCCCGATATTAAAGTTTGCGACCGCG
CCTGCCTCCCAGCCAGCTACCGGGGGTATGCATACATACATGCAGCCAGCCATGGGTGGCCACTGACTGACAGTGTCGAC
TCGGCATATATAACAGCTGCTTAGAGGAGCTGGGCTCCGAGATGCGATGCAGCCTGTACAGTGCCCCCACAACCGCACCA
CCCCGCCCTCGTCCTCGTCCTCGTCCCCGTCTCTTCTTCTTCCTCTCGTCTAGTGTTGGCTTCTGGCTTTGGCCTTGGCT
AGCTGAGGCTGAGCTTCTCCCTCCCTCCCTTCCTTCCTTCCCTTTGAAGACCAAGAACTTGAAGGTAGCTGGGCTGCGGG
TCTGGCAATGCCGCCACCCAGGGCGAGCCGGCCGGCAGGGTGCAACGGCGGATCTATGCTACGGCTGCTCGCCGTCGCCT
CCCTCTGCTTCGGTTGCTTCGTCGTCGGGCGCTGGGGGAGCGGCGTGCTCCGGCCGGGTAAGCGATGAGCTGAGCTAGCG
CGCGGGTGTGCGTTCCGTTCCCTTGTGGGGTGTTCGTTCTTTCCTCC-------------------------TCTTTGTT
TCTTTCATCCTCTTTGTTTCTGAAAGTGCTAGCTCAGTTTACAGATCTGAGAAAAGAGAGTGTATAGAGGTCGATGTGTA
TCATGCACTACATCACCTTCTTTTTTTTTGCTATATATACACTCGTGTGTACTGCACTCTCCGTTTATATTCTGATGATG
CGAGGGGCTGT--TCTGTTGTTAACTTGATTCACTTTCATCTCACTAAACAGATTCCGGGAGGACGGCAGGAGCAGCGAT
CTACGCCGGTGATCTGGTGAGTTTGATCCATCTTCTTGTGTCGAGT-----GTATTATAAGCTCTAGAGTGTTCCCGTGC
TAGCTTAGCTTCTCCGTTCATGTAAGAAATTCACCACGCGTCTCATCTCATGTCTGTGGAGAGGAAAGCAAACAAAGATG
CCATCCATCCTAGCTAGATGTCGCAAGTTTTCATGTTTGGCTTCGGCCGATGCATCTGACAAAGGCACAAAGCCAAATCA
CACGATTGCGATGACTTGCGCAACGATAATCCACTTGGATGCGTCGAAATTAAGGACGCGGACCTTGGCTAGCTAGGGCC
AGCGCCGCCGTCTCGTCGGCGTCGCTCGCTGGTCCCGTCGCCGGCCGCGGACAGCGACCGCCAGCCAGCCAGCTCACGGC
GGCGTACGGCGCACCTGCTA----------GCTAGCTCCCGACAGGCCTTCCACGGCGCGCGGCGGGGACCAGACGTCGG
CGAGGTAGCGACCAGACGTCGTCGCTGCCCGTACGTACAACTTTTGCATAGCAGCACATTAACGCCGCGCGCACGGCCGG
GCGCTCGGACCACACGCGCACGTACGAGTAGGAGCTTGATTGATTGCGCGGACGCGATACTTTCACTCGTGAGCTAACGA
GCAGTTTTCATTGGTGTCGCAGGAGGGCTACCGCCATGGGGGCGGCAGGCGGCGGCTGCTGGCCGGGGGCCCCGGCCCCG
GGTCGCACCCGCCGCGGTGCACGTCCAAGTGCGGCAGCTGCAGACCGTGCGTGCCCGTGCACGTGTCCGTGCCGCCCGGC
GTGCTGGTCACCACGGAGTACTACCCGGTGGCGTGGCGCTGCAAGTGCCGCGACCGCCTCTACATGCCGTGACCACCGGC
CGCCGCCACATGCAGCCCGCGCGCGTCGGTGGCCTCGGTCGAACGTCCGGCGGCAGGAAGAAGATGCGGCATGTAGCGCC
CGCCGCCCGGGCCGGCCGCCGAGTGTACGCGGCCGCATACGTGCGTACTGTGCCCGTGCCGTACAGGGGCGCGCACCGTC
AGTGTACATGTATGGCAGTGAGTGACAGACATGGGTGGTGCTGGAGTGATGGATGCACGTGGTGGGCTACCGT-------
---GGCATGGCAGGGCCGGGCCGGCCTGCATGTGTAGCCGTGGACGGTGCTGCTGTGCCCTGGAGGAGCGTGGACGTGGT
GTGGCAGCCCCGGCGCCATGGACCTACCGGGGGCGGTGGCGCAGGCAGGCAGCTCCCCCAGGCGCCTTGGCCTCTTTGCA
TGATTTTCGTGCGTGCCATTCAGTCATTCTTAGGCACTGAAATATACTACCTCATGGCATTTTTCTTTTCTCTCATC---
------------------------TTAGTAGGAGTATTTCGCTATTTTTGTGTTGCGTCCATCCATCATCACCTT-TTTG
TGCGGGGACATCCTTCAACAATTCTACTACAGTGTACGTAATAATAATACTGATC--AATTATAACGTGATGTACTTGG-
--GGAAGACGACGAGGCTCGTCAACAGCGCGATTG--CAGTGTTTCCGACTTCATTTATTCTTGTCTGGGACGACATGCA
TGTCCTGAAGCGGCCAGCGATTCATGTGCCCACACTGTGCGTGCATCCATCTTGAAACCTTGGGAAACAAAAAAAA----
----------------------------AAAGATATCCTGGAACATCTTGCCAAGTGCCCCAAGCAGCAAAATAAGAAAA
GGTTGTTTTAGCTAAACAAAATTGAGTGTCAACACAGTGCTAAACATAACCAGATTATGGAAATCCT--TACTATTTAGC
TTTCAATTTTTTCCTGTTTTAACCCAGATGTACCTTGCGTTAGATTTTACGGTTTTGCTATTTCACATCTAGATGTG---
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>SNPs
-S-SSSSSS-SS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS------------------------S---S-----------------------SS-------
---S------------------------------------------------------------------S---------
---------------------------S---------S--SSSS------------------------------------
--S-----------------------------S-----------------------------S-----------------
------------------------------S-------------------------------------------------
------------------S----------S-------S-----S-S-------S---SS---------------------
-----------------------S-------------------------------------------S---S--------
---------SS-----------------------------------S----SSS--------------------------
----------------S--SSS---SSSS-----S-SSSSSSS---SSSSSSSSSSSSSSSSSSSSSSSSSS----S---
----S-S-S------S---SSSSSSSSSSSSSSS-------------------S----S--SS-SS-SS--SSSSS-S-S
SS-SS-SSSSSS-SSSSSS-S-------------------------------------------S-S---SS--------
-S---S-----SS-S----------SS-S----S----S-S--S--S---------S---S---S---------------
-------------------------------------S---S----SSSSS--S---------------S------S---
----------------------------SSS--------------------------------S----------------
---------------------------S-------------------------S--------------S------S----
--------S-------------------------S----------S----------------------------------
-------------------S---------------------------------------S--------------------
--------------S-----SSSSSSSSSS-------S------SS----------------SS---------------S
-----------------------------------------------S--------------------------------
-------------------------S-SSS----------------------------SS------------S-------
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-------------------------------------------S--------------------------------S---
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------S---------SSS----------S------------------------SSS----S--S--S----------S-
------------------------------------------S-------------------------------------
-------------------------------------------------------------------------SSSSSSS
SSS----S------------------------------S-----------S-----------------S-----------
--------S----------------------------------------------------------S-S----S-----
---------------------------------------------------S-----------SS---SSSS-SS-SSSS
SSSSSSSSSSSSSSSSSSSSSSSS-------------------------------SS------SS-------S--S----
--S---S-S---------------------------------------------SSS---------------------SS
SS---------------------------------SS----------------------------------S--------
-----------------------------------------------------------------S-------S--SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S--------------------------------------------
-------SS------------------S--------S------------------------------SS-----------
--S-----------SS---S-S--SS--------S---------------SS-------------------------SSS
S
>forward_294
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----------------------------------GGCGACGACCTATGAGAGTG--------------------------
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>reverse_2208
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-----------------------------------------------GTAGCAGCACATTAACGCCG-------------
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>forward_688
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----------------------------TCCCTCTTTTTACCGGCGTC--------------------------------
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>reverse_2615
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------------------------------------------------------CACAAGATGACGCAGCAGC-------
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