>input_sequence_51233
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------------------------------------------------------------------------------GA
ATATATTGCAAGTTTCTCCGGAAAAAAAATAGCACCTTTGACGGTGGAACCCGTTCCTTGTTTTGGATTGCATGGAAAAG
AAAGAGAGAAAACATATTTTGAGGTCCGTCCGCGCGTAACAGTGTTTCTCGCTGCTTCTAGCGACTGTGTGGCGACTCAG
TGCGCGTTCTCGTCGGCAACCCTTCACGTTCAATCCCCATCTGTTTTCCAAAAAAACATACACAAAATCGCCCTGATTCT
CCTTCCCACCGCCCCATACAGAGATTCCTATCCTCCTCCAGCAAGTGTGAGAGCCCTATCCAGATCTGATTCGGAACAAC
CTGGTGAGGAATAGAGAGGATTTTGGGAGGAGGTTGTGGGGTGTGGCGGCGGCATATTTGGAGGCGTGAAGGGGGCTACG
GTGGAGAGGCGAACCCAGCAGCCATCACCTGCATTGGGGGGACCTGATGGCAGCATACATGGAAGGAGTGGAGATTAAGT
TCAAGAACCTGCAGCTCTGTGAAGCGGAAAAGAAAGGGATCAGGATTGGTAGGAAGCAAGCATGCTCCTCTCAGGTGAGT
AAGATTCAGGCAGTAGGCAAGCTATTTGCAGAGAGGCC-TGCTAGGGCTGAACATGTGGGAAGAACTCTAGGGGGAGTCT
GGAGCCCATTGTTTGGGGTGGATTGCAAAGACTTGGGTAGGAATAGATTTCTATTTATTTTCCAACAAAAGGCTGATAAG
GAAAAGGCACTAGATGTTGGACCATGGAGATTTAACAATGACCTATTGGTGATGGAAGATTTTGTGCCAAGTAGAACCAT
AGATGAATATGAATTCAAGACAATACCTATTTGGGTTAGAGCTTACGGCATCCCAATTGGA-ATGATGAACAGAGAGACA
GGAGACTTAGTAGGAGAACAAATTGGAGAAGTTATTGATGTAGACCCAGATGTTAATGGTGATTCAATGGGGGCATTTAT
GCGGATCAAAGTTAAATTAGATATCACTATCCCAATTATGAGATTTATAACAACGTTCACTGAAGATGAGGTAGAACAAG
AACAGAAAGATGAAATGATTCTTTTGGG--AGATGATGAAATGAAAGAAATAAGAAATGAGAAGAAAGAAGGG-GAGGAA
AAGATTGTCTCATTCACATACGAGTATCT--TCCCGACTTCTGTTATAGTTGTGGAATTATTGGACATACTGAAAAATCG
TGCCCAACTAGATCTAGAAGAACGGGGTCTAGGCAATTTGGATCATGGCTGCGTGCAAATATGTACAAGGGGATCTCAAG
CGAAGAAAGAAGTAGGGCTCCAAATAATAAAGGAAAATTCTAGCCACGCAATAGTACAGGTAA-CAAGGGGAGCAAACAG
GGAAGCGATGGGCCGTTCTGGCGAAGAGATGTACCAAGCGAAGATGATGAGGGAGGACC---A---AGGAGTGATGGGAA
TGAAGTTACAAGTCCTCTCAAA----------------------------------------------------------
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>chr4B_1_TraesCS4B01G141800
TGGTTATCAATGAGCAATACTTCTTTCTGGGGAGCACCTATTCGTCACGTAACTGAAAAAATGTTTCAATAATCACTTTC
TTTTCTGACCATCAAATTGACATTCAACGGCTGACTCATCCTCCTCAAACCCACTCAGCCATGTTCATCTTCTTCCTCAC
GCAGTTGACAGCCGACCTAGCCCTAACCACCTGCCCTAGGATGTTGCTGCAACCTCTTTCATTTGCACCAGGATGATGTT
TTATGTTTTTGTTATATTATAGTACCTTTGACAGCGGGTAGCCTTCTCTTTCCACCTCCACAAGAAA-GATTCCATGCTT
TCCTCCTCCTCCCGTCGATGCCACCGCCGGTCCGCCTCAAC-TTCGATGGCCTTTGGGCCAT--GGAAGTGCGGAGAACC
TCCTCCCCCCTCCCACAGGGGGAGGGACCCCGTTCTCGTTCTT--GTTAAATTTAGCGTCATGGTTGGGGTTGTGTGGTG
GCGGCG---ATGTCCCTCAGTTGG----AATAACGTATCCCACATTCTATCCCCATCCT---AGTGCATCTAGCTTCGAC
AAAGGGTATGTGTGGAGGTGTGTCTCCGTCGGATCTCATGAGATTCAGTCGGTGCTGGTCTTTAGTGGATCTATTTGGAT
CCGGTCTTCTTTCGTCTTTGTTTGAGTGTTT----------A--CTTCTGATCTACGACTTTCTTCATCGACGATGGTTG
CTCCTCTAGTGCG--GGTCCTATGAGTCC----TTAGCACGACAACTTCCCGACTGTCTATTACAAG---GTTTGCCCG-
CTCCGACGAGGGAGAGACGATAACGACGACACACCTTTGGCTCACACTAGTGTTTGTAGTCATCACTAGGTGATCGACGG
ATCTGGTTGTAATTTTTATTACCTCTGTTGTTTGGTGTTCCTATAGACCCAAAGCAGTCGGACCCTTCCCTGGACCCTGC
ACAAGCGGGAGCTACGTGCACAAGGATGTACTTATTTTTTTGGTGTTTAGTGTTCCTTATACTGCCAGGATTGAAGATGA
ATATATTGCAAGTTTCTCCGGAAAAAAAATAGCACCTTTGACGGTGGAACCCGTTCCTTGTTTTGGATTGCATGGAAAAG
AAAGAGAGAAAACATATTTTGAGGTCCGTCCGCGCGTAACAGTGTTTCTCGCTGCTTCTAGCGACTGTGTGGCGACTCAG
TGCGCGTTCTCGTCGGCAACCCTTCACGTTCAATCCCCATCTGTTTTCCAAAAAAACATACACAAAATCGCCCTGATTCT
CCTTCCCACCGCCCCATACAGAGATTCCTATCCTCCTCCAGCAAGTGTGAGAGCCCTATCCAGATCTGATTCGGAACAAC
CTGGTGAGGAATAGAGAGGATTTTGGGAGGAGGTTGTGGGGTGTGGCGGCGGCATATTTGGAGGCGTGAAGGGGGCTACG
GTGGAGAGGCGAACCCAGCAGCCATCACCTGCATTGGGGGGACCTGATGGCAGCATACATGGAAGGAGTGGAGATTAAGT
TCAAGAACCTGCAGCTCTGTGAAGCGGAAAAGAAAGGGATCAGGATTGGTAGGAAGCAAGCATGCTCCTCTCAGGTGAGT
AAGATTCAGGCAGTAGGCAAGCTATTTGCAGAGAGGCC-TGCTAGGGCTGAACATGTGGGAAGAACTCTAGGGGGAGTCT
GGAGCCCATTGTTTGGGGTGGATTGCAAAGACTTGGGTAGGAATAGATTTCTATTTATTTTCCAACAAAAGGCTGATAAG
GAAAAGGCACTAGATGTTGGACCATGGAGATTTAACAATGACCTATTGGTGATGGAAGATTTTGTGCCAAGTAGAACCAT
AGATGAATATGAATTCAAGACAATACCTATTTGGGTTAGAGCTTACGGCATCCCAATTGGA-ATGATGAACAGAGAGACA
GGAGACTTAGTAGGAGAACAAATTGGAGAAGTTATTGATGTAGACCCAGATGTTAATGGTGATTCAATGGGGGCATTTAT
GCGGATCAAAGTTAAATTAGATATCACTATCCCAATTATGAGATTTATAACAACGTTCACTGAAGATGAGGTAGAACAAG
AACAGAAAGATGAAATGATTCTTTTGGG--AGATGATGAAATGAAAGAAATAAGAAATGAGAAGAAAGAAGGG-GAGGAA
AAGATTGTCTCATTCACATACGAGTATCT--TCCCGACTTCTGTTATAGTTGTGGAATTATTGGACATACTGAAAAATCG
TGCCCAACTAGATCTAGAAGAACGGGGTCTAGGCAATTTGGATCATGGCTGCGTGCAAATATGTACAAGGGGATCTCAAG
CGAAGAAAGAAGTAGGGCTCCAAATAATAAAGGAAAATTCTAGCCACGCAATAGTACAGGTAA-CAAGGGGAGCAAACAG
GGAAGCGATGGGCCGTTCTGGCGAAGAGATGTACCAAGCGAAGATGATGAGGGAGGACC---A---AGGAGTGATGGGAA
TGAAGTTACAAGTCCTCTCAAATTAAAACAGTGTGAGAACCAGGTAGTAGGGGAGGAGAAAAGACTGGATCGCGGCGGAA
TAG-----------------------------------------------------------------------------
-TGATACAAGACCCCACTGAAAAGGTACAAAGAATGGAAAGAGAACCAAGTAAGGCTGAAGAGATGAATGACACTATCAC
AAAAGTAATACATGATATCCAAGGGTCAACAAAGGTTATTTTGGAGCAGAACAAGGAAGAGTCCCAGAACAAAGAAGGAA
ATATATTTATGGAGTCAGGAAAAGGCATAAAGAGAGGTACTTTCAAGCGAATTGAGAGGAAGGAAAGAAACCAGCAGGAC
CAATTAAGTACGACAGAATAGAAGAGAGAAAGGTAA-----TTATGATGGAAATTGATGAAGATATAGAACTAGCAAAGA
AAGCAAAGATGGAAGTCGAGGAGGGTGAAGAAAAAGAGGAGAA------------CAACTCTGAAACTGCAAACGCCGGG
CTGCAGGGACAGCCTGGCGAGCCAAAATGAGAATTGTAGTATGGAACTGCCGGGGATTGCGGAATGGCCCGGCGGTGAGA
GGACTTCTGGATCTTCAGAAGCAGGTGGACCCCGACATCCTCTTCTTATCTGAGACCAAATTGGATAAGAGGAGGATGGA
AAAGTTTAAGTGGATGTTACAGATGGGAAACATGATAGTGAGAGATTGCGAGGGGAAGAGTGGGGGATTGGCATTGTTTT
GGAAAAAAGAAGTAAATTTGGAGCTGCTCAACTATTCTAAGAATCATATTGATGCAAAAATAGTGGAAAAGGATGGGTTT
AAATGGCGATTTACAGGTATTTATGGAGAGCCAGCGAATGATAAAAGGAATATAACTTGGAAATTACTTCGCGTAATAAG
TCAGCAGCTGAACCTTCCATGGTTGTGTGCGGGCGACTTTAATGAGATCATGTATAACCATGAGAAGAGAGGGGGGCCAG
CCAGAGCTCAAAGCCAAATGGAAAATTTTAGAGCAGCCCTAGCAAGTTGTGGGTTGAGAGATTTGGGCTATGTGGGG-
>chr4D_1
TGGTTATCGATGAGCAATACTTCTTTCTGGGGAGCACCTATTCGTCACATAACTAAAAAAATGTTTCAACAATCACTTTC
TTTTCTGATCATCAAATTGACATTCAACGGCTCACTCATCCTCCTCAAACCCACTCAGCCATGTTCATCTTCTTCCTCGT
GCAGTTGACAGCCGACCTAGCCCTAACCACCTGCCCTAGGATGTTGCTGCAATCTCTTTCATTTGCACCAGGATGTTGTT
TTATGTTTTTGTTATGTTATGGTACCTTTGACAGTGGGTAGCCTTCTCTTTCCTCCTCCACAAGAAAAGATTCCATGCTT
TC---CTCCTCCTGTCGACGCCACCGCCAGTCCGCCTCATC-TTCGATGGCCTT-GGACCAT--GGAGGTGCGGAGAACC
TCGG----CCCCCCACCGGTAGGAGGGGCCCGTTCTCGTTCTT--GTTAAGTTTAGCGTCTTGGTTGGGGTTGCGTGGTG
GCGACG---ATGTCCCTCAGTTGG----AATACTGTATCCCACATTCTATCCCCATTCAGATAGTGTGTCTAGCTTCATC
AAAGG--GTGTGTGGAGGTGTGTCTCCGTCGGATCTCGTGAGATTCAGTCAGAGCTGGTCTTTAGAGGATCTGTTTGGAT
CCAGTCTTCGTTCGTCTTCATTTGGGTG-TTTACAAGTTTGGTCCTTCCGATCTACGACTTTCTTCATCGACGATGGTTG
CTGCTCTAGTGCG--GGTCATATAAGGTC----TTAGCACGACAACTTCCCGACTGTCTACTACAAA---GTTTGTCCGG
CTCCGACGAGGGAAAAGCGATAACGATGGCACGCCTTTGGCTCACACTAGTGCTTGTAGTCGTTGCTAGGCGATCGACGG
ATCTGGTTATAATTTTTATTACCTCTGTTC----------CTACAACCCAAAAGCGGTCGGACCTTTCCCTGGACACTGC
GCAAGTAGAAGCTACATGCACCGGGCTGT--TTTTTTTTCTGGTGTTTGATGTTCCTTGTACTGCCATGATTGAAGATGA
ATATATTGTAAGTTTCTTAGGAAAAAAA--AGTACCTTTGACAGTGGAACTCGATCCTTCTTTTGGATTGCATGGAAAAG
AAAGAGAGAAA---------------------------------------------------------------------
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>chr4A_1
TGGTTATCGA-GAGCAATACTTCTTTTTGGGGAGCACCTATTCGTCACGTAACTGGAAAAATGTTTCAATAATAACTTTC
TTTTCTGACCATCAAATTGACATTCAACAGCTGACTCATCCTCTTCAAACCCACTCAGCCATGTTCATCTTCATCCTCAT
GAAGTTGACAACCGACCTAGCCCTAACCACTTGCCCTAGGATGTTGCTGCGACCTCTTTCATTTGT----GGATGTTGTT
TTACATTTTTATTATGTTATAGTACCTTTGACAATGGGTAGCCTTCTCTTCCCTCCTCCACAAGAAAAGATTCCATGCTT
TC---CTCCTCCCGTCAACGCCACCACCGGTCCGCCTCATC-TTCGATGGCCTTTGGGCCAT--GGAGGTGCTAAGAACC
TCGG----CCCCCATCGGCGGGAGGGGCCCCATTCTCGTTCTT--GTTAAGTTTAGCGTCTTGCCTGGGGTTGTGTGGCG
GCGGCG---ATGTCCCTCGGTTGG----AATAATGTATCCCACATTCTATCCCCATCCAGATAGTGCGTCTAGTTTCGTT
GAAGG--GTGTGTGGAGATGTGTCTCCGTCAGATCTCGTGAGATTCAGTCGGTGTTGGTCTTTAATGAATTTGTTTGGAT
CCGGTATTTGTTCGTCTTTATTTGGGTGTTTTACAAGTCTGGTCCTTCCGATCTACGACTTCCTTCATCAACGATGGTTG
CTGCTTTAGTGCG--GGTCATATAAGGCC----TTGGCACGACAACTTCCCGATTGTCTACTAGAAG---GTTTGTCCGG
CTCCGACAAGGAAGAGGCGATAACGACAACACACCTTTGACTCGCACTAGTGCCTGTAGTCGTCGCTAGTTGATCAATGG
ATCTGGTTGCAATTTTTATTACCTCTGTTCTTTGATGTTCCTATAGACCCAAAGCGGTTAGACCCTTCCCTAGACCCTGT
GCAAGCGAGAGCTATGTGCATCAGGTTGTTCTTTTCTTT--------TAGTGTTACTTATACTGCCATGATTGAAGATGA
ATATATTTTTAGTTTCTCGGAAAAAAAT--AGTACCTTTGACAGTGGAACCCGATCCTTCTTTTGGATTGCATGGAAAAG
AAAGAGAGAAAA--------------------------------------------------------------------
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>chr7A_285
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--------------------------------------------TCTCTTTCCTCCTCCACAAGAAAAGCTCTT------
-----GTCCTTCCGTCGGTGCCGCCGGCGGTCCATCCCATC-TCCGATGGCCTCTAGACCAT--GAAGGTGCGGAGGATC
TCCTCCCCCCCGCACCGGCGGGAGGGACCGTGTTCTCGTTCTTTTGTTAGAGTCAGCGTCTTGGTTGGGGCTGTGTGGCG
ACGGCG---ATGTCCCTTAGTAGG----AATAATGTCTCCCACGTTCTATCCCCGCCCCGATGGTGCTTCTAGCATCGTC
GGAGG--GTGTGTGGAGGTTTGTCTCCGTCTGATCTTGCGGGATTCGGTCGGTGTTGGTCTTTAGTGGATCTATTTGGAT
CCGTTCTTCGTTCGTCTTCATTTAGGTG-TTTACAGGTTTGGTTCTTCCGATCTACGACTTTCTTCATCGGCGATGGTTG
CTACTCTGGTGTGCTGGTCCTATGAGGCC----TTAGCACGACGACTCCCCGACTGTCTACTACAACAAGGTTTGCCCGA
CTCCGATGAGGGAGGGGCGATGACGGCGGCGCGCCTTTGGCTCGCTCCAGTGCTTGTAGTCCTCGCTAGGTGGTCCACGA
ACATGGTTGTAATTTTTATTACCTATATTGTT------------------------------------------------
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------------------------------------------------------------------------------
>chr7D_320
TCC-----------------------------------------------------------------------------
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-------------------------------------------------------------------------------T
TC---CTCCTCCCGTCGGCGCCGCCGCGGATCCGCCCCGTC-TCCGATGGCCTTTGGCCTGT--GGAGGTGCGGAGGATC
TTGA---CCCCCCGCCGGCGGGAAGGACCCCGTTCTCGTTTTT--GCTAGGTTGAACGCCTTGGTTGGGGCTGTGTGGCG
ATGGCG---ATGTCCCTCGATAGC----AATAATGTCTCCCACGTCCTATCCCCGTCCCGATGGTGCGAATAGCGTTGTC
GGAGG--ATATGTGGAGATGTGTCTCCGTAGGATCGCATGGGATTCGGTCGGTGCTGGTCTTCGGTGGATCTATTTGGAT
CCA----TTGTTCGTCTTCGTTCGTGTG-GTTTCAGGTTTGATCTTTTCAATCTACAACTCTCTTCATCGGTGATGGTTG
CTGCTCTGGTGTGCTGGTCCTTTGGGACC----TTAGCACGACAACTTCCCGACTGTCTAC-ACAACAAGGTTTGCCCGA
CTCCGGTGATGGAGGGGCGATGATGGCGGCGCGCCTTCGGCTCGCTCCAGTGCTTATAGTCGTCGCTAGGTGGTCCATAG
ACCTAGTTGTAATTTTTATTACCTCTTGTGTT------------------------------------------------
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>chr4D_322
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-----------------------------------------------------------------------CTT------
-----CTCCTCCCATCGGCGCCGCCGCCAGTCTGTCCCATC-TTCAATGGCCACTAGGCCAT--GGAGGTGCGGAGGATC
TCGG---CCCCCCGCCAGCAGGAGGGACCCCGTTCTCGTTCTT--GGCAGAGTCGGCGTCTTGGTTGGGGCTCTGTGCCA
GTGGCG---GTGTCCCTTAGTAGG----AATAATGTCTCCCACGTTCTATCCCCGTCCCGATGGTGCGTCTAGCATCATC
GTAGG--GCGTGTGGAGGTTTGTCTCCATCGGATCTTGCGGGATTTGGTCGGTGCTGGTCATCGGTGGATCTATTTGGAT
CCAGTCTTTGTT----------TAGGTA-TTTACAGGTTTGATCCTTCTGATCTACGACTTTCTTCATCGGTGATGGTTG
CTATTCTGGTGCGCTGGTCCTATGGGGTC----TTAGCACGACGACTTCCCGACTGTCTACTACAACAAGGTTTGCCCGG
CTCCGGTGAGGGAGAGGCGATGACGGCGGCGCGCCTTCGGCTCGCTCCAGTGCTTGTAGTCGTCGCTAGGTGGTCCACGG
ACATGGTTGTAATTTTTATTACCTCTGTTGTT------------------------------------------------
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>chr1D_323
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---TCCTCCGCCCGTCGCCGCCACCACCGGTCCACCTCCCCTTTTGATGGCCTTTGGGCCAT--GGAGGTGCAGAGGACC
TCGA---CCCCCCATCGGCGAGAAGGACCCCATTCTCGTTCTT--GTTAGTTTTAGCATCTTGGTTGGGGCTGTGTGGCG
GCGGTG---ATGTCCCTCAGTAGG----AATAATGTCTCCCACGTTCTATCCCCGTACCGATGATGTGTCTAGCTTCATT
GAAGG--GCGTGTGGAGGTGTGTCTCCGTCGGATCTCACGTGATTCAATCTGTGTTAGTCTTCGGTGGATCTATTTTGAT
CTGATCTTCGTTCGTCTTCATTTGGGTG-TTTACAGGTTTGATCCTTCCAATCTACGACTTTCTTCATCGGCGATGGCTG
CTGCTCTAGTGCGCTAGTCCGATGGGGCC----TTAGCACGATGACTTTCGCACTGTATAGTACAACAAAGTTTGCCCGA
CTACAGTGAGGGAGGGGCCATGATGGTGGCGCGCCTTTGGCTTGATATAGTGCTTGTAGTCCTTGCTCGGTGGTCGACGG
ACCTGGTTGTAATTTTTATTGCCTCTGGTGTT------------------------------------------------
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>chr4B_325
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-----CTCCCCCCGTCGGTGCCGCCACCGGTCCGTCCCATC-TCTGATGGCCTCTAGGCCCT--GGAGGTGCAGAGGATC
TCGG---CCCCCTGCCGGCTGGAGGGACCATGTTCTCGTTCTT--GTTAGAGTCAGCGTCTTGCTTGGGGTTGTGTGGCG
GCGGCG---GTGTCCCTTAGTAGG----AATAATGTCTCCCACGTTCTATCTCCATCCTGATGGTGCGTCTAGCATCATC
GGAGG--GCGTGTGGAGGTTTTTCTCCGTCGGATCTTGCGGGATTCGATCGGTGTTGGTCTTGAATGGATCTATTTGGAT
CCGGGTTTCGTTCGTCTTCGTTAGG-TG-TTTACAGGTTTGATTCTTCTGATCTACGACTTTCTTCATCGGCGATGGTTG
CTACTCTGTTGCGCTGGTCCTATGAGGTC----TTAACACGACGACTTTCCGACTGTCTACTACAACAAGGTTTGCCCGG
CTTCGGTGAGGGAGGGGCGATGACGGCGGCGCGCGTTCGGCTCGCTCCAGTGCTTGTAGTCGTTGCTAGGTGGTCTACGG
ATATGGTTGTAATTTTTATTACCTCTGTTGTT------------------------------------------------
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------------------------------------------------------------------------------
>chr3B_325
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-----CTCCTCCCGTCGGCGCCGCCGCCGGTCCGTCCCATC-TCCGATGGCCTCTAGGCCAT--GGAGATGCAGAAGATC
TCGG---CCCCCCGCCGGCGGGAGGGACCCCGTTCTCGTTCTT--GTTAGAGTCAACATCTTGGTTGGAAATGTGTGGCG
GCGGCG---ATGTCCCTTAGTAGG----AATAATGTCTCCCACATTCTATCCTCGTCCTGATGGTGCATCTAGCATCGTC
GGAGG--ACGTGTGGAGGTTTGTCTCTGTCGGATCTTGCGGGATTCGGTCGGTGCTGGTCTTCGGTGGATCAATTTGGAT
CCGGTCTTCGTTCGTCTTCGTTTAGGTG-GTTACTGGTTTGATCTACCTGATCTACGACTTTCTTCATCGGTGATGGTTG
CTACTCTGGTCCGCTTGTCCTATGGGGCCTTAATTAGCACGACGACTTTCCGACTGTCTACTACAACAAGGTTTGCCCGG
CTCCAGTGAGGGAGGGGCGATGACGGCGGTGCGCCTTCACCTCGCTCCAGTGCTTGTAGTCATCACTAGGTGATCCACAG
ACATGGTTGCAATTTTTATTACCTCTGTTGTT------------------------------------------------
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------------------------------------------------------------------------------
>chr5D_343
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-----------------------CCGTCGGTCCACCCCATT-TCCGATGGCCTCTAGGCCATATGGAGGTGCGGAGGATC
TCGG---ACCCCTGCCGGCGGGAGGGACCCCGTTCTCGTTCTT--GTTAGTTCCAGCATCTTGGTTGGGGTTGTGTGATG
GCGGTGGCGATGTACCTTAGTATAAATTAATAATGTCTCCCACGTTCTATCCCTGTCCCGATGGTGTGTCTAGCGTCGTC
GGAGG--ACGTGTGGAGGTTTGTCTCCACTGGATCTCGCGGGATTCGGTCGGTGCTGGTCTTCGGTGGATCTGTTTGGAT
CCGGTCTTCGTTCTTCTTCGTTTGGTTGTGTTACAGGTTGCTAC--TCTGGTCTACGACTTTCTTCATCGGTGATGGTTG
CTACTCTGGTGCGTTGGTCCTATGAGGCC----TTAGCACGACGACTTCCCGAATGTCTAGTACAACAAGGTTTGCCCGG
CTCCGATGAGGGAGGGGCGGTGACGGCGGTGCGCCTTCGGCCCGCTCCAGCGCTTGTAGTCGTCGCTAGGTGGTCCACGG
ACATGGTTGTAATTTTTATTACCTCTGTTGTT------------------------------------------------
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>chr2D_345
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-------------------------GCCAGTCCATCCCATC-TCCGATGGCCTCTAGGCCAT--GGAGGTGCTGAGAATC
TCGG---CCCCCCGCCGGTGGGTGGGACCCCGTTCTCGTTCTT--G--AGATTCAGCGTCTTAGTTGGGGCTGTATGGCG
GTGGCG---ATGTCGCTTAGTAGG----AATAATGTCTCCCATGTTCTATCCCCGTCGTGATGGTGCGTTTAGCATCACT
GGAGG--GCGTTTGGAGGTTTGACTCTGTCGGATCTTGCGGGATTCAGTCGGTGCTGGTCTTCGATGGATCTATTTGGAT
CCGGTCTTTGTTCGTCTTTGTTTAGGTG-TTTACATGTTTGA--CTTCTGATCTACGACTTTCTTCATCGACGATGGTTG
CTACTCCGGTGCGCTGGTCCTATAGGGTC----TTAGCACGACGACTTCCTGACTTTCTACTACAAGAAGGTTTATCCGG
CTCCGATGAGGGAGGGTCGATGACGGCGGCGCACCTTTGGCTCGCTCCAATGCTTGTAGTCGTCGCTAGGTGGTCCACGG
ACATGGTTGTAGTTTTTATTACCTCTGTTGTT------------------------------------------------
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>chr5B_1106
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-----------------------GTCCGTCCGCGCGTGACGGTGCTTCTCGCTGCTTCTGGAGACTGCGTGGCGACTGAG
TGCGCGTCCTCGTCGGCAACCCTTCCCACACAATCCCCATCCGGTTTCCACG-AAACAAACACAAAATCGCCCTGATTCT
CCTTCCCACCATCTCGTGCATAGATTCCAGTCCTCCTCCGGCAAGTGTGAGAGCCC-ATCCAGATTTGATTTAGAACAAC
CTGGTGAGGAATAGAGAGGATTTTGGGAGCAGGTTGTGGTGTGTGGCGGTGACAGATTTGGAG-CGTGAAGGGGGCTACA
GTGGAGCGGCTGACCTAACATCTATCAGCTGCAAT-GGGGGACCTCACGACCGCATACCTTGAAGGAGTGGAGGGCAAAC
TCAAGAACTTGCAGCTCTTCGAAGCGGAAACGAAGGGGATCGGGATTGGTAGGAAGCAAGCATGCTCCTCATAGGTGAGC
AAGCTTCAAGCAGTAGGCAAGCTTATTGTAGAGAGA-C-TACTAGGGTTGAACATGTGGGAAGAACTCT-TGGGGAGTCT
GCAGCCCA--TTGTGGGGTGGATTGTGAAGATTTGGGCAGGACTAGATTTCTATTTATCTTCCAACAAAAGGTTGATAAA
GAAAAGGCAATAGATGTCGTGCCATGGAGATTTAGCAATGACCTATTGGTGATGGAAGATTTTGTGCTAATTCGAACCAT
AGATGAATATGAATTCAAGACCATACATATCTAGGTTAGAGCTTACGGCATCCCAAATGGG-----TGAGCAAAGAGATG
AGAGACTTAGTAGGAGAACAAATTGGAGAAATTATTGTTGTAGACCCAGACGTTAATGGTGATTCAATGGGGGCATTTAT
GCGGATCAAAGTGAGATTAGATATCATTGTACCAATTATGAGATTTATAACAACCTTCATTGAGGATGAGGCAGAACAAG
AGCGGGAAGATGAAATGGT--TTCGGGG--GGACGATGAATCAAAAGAAATAAGAAAAAGGAAGAAAGAAAGG-CAGGAA
AAGATTGTCTCCTTCACATATGAGTATCT--TCCCGTCTTCCGCTATAGTTCTGGAATTATTTGACATACTGAAAAGTCA
TGTACAACTAGATCTAGAAGAACAAGGTCTAGACAATTTGGACCATGGCAACATGCAAATCTGTACGACGGGAGCTCAAG
CAAAGAAATAAGTAGGGGTTCAAATGATAAATGCAAATTGTGGCCAATCAATAGTGCAGGT-A-CAAGGGGAGAAAATAG
GGAAGCAATGGGACGTCCTGGCGAAGAAATATACCAAGCAGAGACGATGAGGGAGGACCAAGA---AGGAGTGATGGGAA
TGAAGTGA-AAGTCCTCTCAAACTAAA-CAGTGCGAGGATCAGGTAGTAGGGGAGGCAAAAAATCTGGATCTCGGCAGAA
TAG-----------------------------------------------------------------------------
-TGATACAAGACCCCACTGGGAAGGTACAAAAAACT-AAAGAGAATCAAGTAAGGCTGAAGATAAGAATGACACTATCAC
AAAAGCAAAACATGGTTTTCAATGGCCAATAAAGGTTATATTGGAGCAGAACAGAGAAGAGGCCCAAACCAAAGAAGGAA
ATACATTTATGGAGTTAAGAAAAGGCATAAAAAGGGGTACCTTCAAGCGAATCGAGAGGAAGAAAAGAAACCAGCAAAAC
CAATTAAGTACAATAGGACAGAAGAACATA----AA-----TTATGATGGAAACTGATGAAGATACAGAACTAGCAAAGA
AACCAACGATGGAAGTAGAGGAGGTTGAAGAAAAGGAGGAGAA------------CAACTCTGAACCTGTGAACGCTAGG
CTGCAGGGACTGCCTGGCGAGCCAAAATGAGAATTTTAGTATGGATTTGCTAGGGATTGGGGAATGGCCCGGCAGTGAGA
GGACTTCTGGATCTCCAAAAGCAGGTGGACCTTGACATCCTCTTCTTATATGAGACCAAACTGGAGAAGAGGAGCATGGA
AAAGTTTAAGTGGATGCTATGGTTGGGGAACATGATGGTGAGAGATTACGAGGGGAAGAGTGGAGGATTGGCATTTTTAT
GAAAAAAAGGTGTAAATTTGGAGCTGCTCAACTATTCCAAGTACCATTTGATGC--------------------------
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>chr5D_1124
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-----------------------------------------GTGTTTCTTGCTGCTTCTGGCGACAGTGTGGCGACTCAG
TGCGTGTCCCTGTCGGTAACCCTTGCCGCTCAATCCCCATTCGTTTTCCACG-AAACAAACACAAAATCGCCCTGATTCT
CCTTCACACCATCTCGTGCATAGATTCCAGTCCTCCCCCAGCAAGTGTGAGAGCCCCATCCAGATCCGATTTAGAACAAC
CTGGTGAGGAAAAGAGAGGATTTTGGGAGCATGTTGTGGTGTGTGGCGGCGCCAGATTTGGAGGCATGAAGGGGGCTGCG
GTGGAGCGGCTGACCTAGCATCTATCAGCTGCAAT-GGGGGACCTGAGGACCACATACCTTGAAGGAGTGAAGGG-----
--AAGAACCTGCAACTCTCTGAAGCGGAAAAGAAGGGGATCAGGATTGGTAGGAAACAAGCATGCTCCTCACTGGTGAGA
AAGCTTCAGGCAGTAGGCAAGCTTATTGCAGAGAGA-CCTGCTAGGGTTGAACATCTGGGAAGAACTGT-AGGGGACTCT
GGAGCCCA--TTGTGGGGTGGATTGTAAATATTTGGGCAGGAATAGGTTTCTATTTATCTTCCAACAAAAGGCTGATAAG
GAAAAGGCACTAGATGCTGGACCATGGAGATTTAACAATGACCTATTGGTGATGGAAGATTTTGTGCCAATTCGAACCAT
AGATGAATATGAATTCAAGACCATACATACCTGGGTTAGAGCTTATGGCATCCCAAATGGGAATGATGAGCAAAGAGACA
GGACACTTAGTAGGTGAACAAATTGGAGATGTTATTGTTGTAGACCTAGACGTTAATGGTGATTCAATGGGCGCATTTAT
GTGGATCAAAGTGAGATTAGATATCACTGTCCCAATTATGAGATTTATAACAACCTTCATTGAGGATGAGGCAGAACAAG
AGCAGGAAGATCAAATGGT--TTTTGGG--GGATGATGAGGCGAAAGAAATAAGAAA----AAGAAAGAAAGG-GAGGAA
AAGATTGTCTCCTTCACATACGAGTATCC--TCCCGACTTCTGCTATAGTTCTGGAATTATTGGACATACTGAAAAGTCA
TGCCCAACTAGATCTAGAAGAACGAGGTCTAGACAATTTTGACCATGGCAGCATGCAAATCTGTACGAGGGGAGCTCAAG
CGAAGAAATAAGTAGGGGTTCAAGTGATAAATGAAAATTCTGGCCAATCAATAGTGCAGTC-A-CAAGGGGAGCAAACAT
GGAAGCGATGGATCGTCCTGGCGAAGAAATATACCAAGCGGAGATGATGAGAGAGGACCAAGA---AGGAGTGATGGGAA
TGAAGTGA-AAGTCCTCTCAAATTAAA--AGTGCGAGGATCAGGCAGTAGGGGAGGGGAAAAGACTGGATCTCAGCAGAA
TAG-----------------------------------------------------------------------------
-TGATACAAGACCCCATTGGAAAGGTGCAAAAAACTAAAAGAGAATCAAGTAAGGCTGAAGAGAAGAATGACACTATCAC
AAAAGCAAAACATGGTTTTCAAGGGCCAATAAAGGTTATATTGGAGC------------------AGAACAAAGAAGGAA
ATACATTTATGGAGTCAGGAAAAGGCATAAAGAGAGGTACCTTCAAGCGAATCAAGAGGAAGGAAAGAAACCAGCAAAAC
CAATTAAGTACGACAAAATAGAAGAAGATA----AA-----TTATGATGGAAATTGATGAAGATACAGAACTAGCAAAGA
AACCAAAGATGGAAGTAGAGGAGGTTGAAGAAAAGGAGGAGA--------------------------------------
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>chr1B_1462
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-----------------------------------------------------------TGGAAGGGGTGGAAGGAAAAC
TCAAGAACTTGCAGCTCTCTGAAGCTGAGAAAAAGGGGACCAGGATTGGGAAGAAGCAGGCATGCTCCTCGCAGGTGAGC
AAGCTTCAGGTTGTGGGTAAACTTCTCTCGGAGCGACC-GGCTAGAGGAGAACATGTAGGAAGATCTCT-GGGGGAGCAT
GGAGCCCAACTTTTGGTGTGGAATGCAAAGATCTGGGTAGGAATCGTTTTTTGTTTATCTTCCAACAGAAGTCAGATAAG
GATAAGGCACTAGATGCTGGACCTTGGAGATTTAACAATGATCTGCTTGTGATGGAGGATTTTGTGCCGAGTAGAACCAT
AGATGATTATGAGTTCAAGTCAATACTTATTTGGGTTAGAGCTTATGGTATCCCAATGGGG-ATGATGAGCAGAGAAACT
GGAATTCTAGTGGGAGAACAAATTGGTGAAGTTGTTGATGTAGACTCAGACATTAATGGGGATTCGATGGGAGTATTTAT
GCAGATTAAAGTGAAGCTAGATATCACAGTCCCAATCATGAGGTTTGTAACATTCTTTAT------TGAGGAGGAACAAG
AACAGAAGAATGAAATGAA--ACTTGGGGGAGATGATGAAGAGAAAGAAATGAAGGA----AAAGAAGGAAGAAGAGGAA
AAGATTGTCTCATTCACATATGAGTATCT--TCCTGATGTCTGTTATAGCTGTGGAATTATTGGACACACTGAAAGGTCA
TGCCCAACTAGATCTAGAAGAACGGGGTCCAGGCAATTTGGACCATGGCTGCGTGCAGTTATGTACAAGGGAAGCTCAAG
CGAAGAAAGAAGTAGGGGCTTGAATGACAGAAGGAATTTCTGGCCAAGCAATAGTGCAGAC-AGTAAGGGGAGTAAACAA
GGAAGTGATGAGACATCCTAGCGAAGAAATGCACCAACAGGAGATGCTAGGGAAGAACC---AGGAAGGGGTGAAGGGAA
AGAAGTGACAAGCCCTCTCAGTTTAAAACAATCTGAGGACTTAAGAACAGGGGAGGGAAAGAGATTGGATTGCAGCAATA
AGCAACAAACCATGAGAAATACATCAGGCAGCCAGGTGAGTGAGGATTTACTGAAGTCAGGTGATGTTAGTCTGGTAAAC
TTGATGGAAAATCCTTTAGGAAAGAAACAAAAACCAGAAATAGAATGGATAAAAGATGAAGAGAAGACAAACAACACCAC
AATAGCAAAGCAGGAGTCAGCAGGACCAATAAAGCTTATGATGACACATAAGAGGGAAGAGGTCCAGAACAAAGAGGAGA
GAAAGTTTCAGAAGTCAGGAATAAGTACAAAAAGGGGTACCTTCAGGCGAATGGAGAGGAAGGAAGGAAATCAGGAAAAT
CAATTCAACATAATGGAACTAAGGAAGAGG----AAGGTTGACATGATGGA---TGTTGACGAGATAGAACTAGCAAAGA
AAGCAAAGATGGACAT---------TGAGGGGAATGAAGAGAAATAAGGAAACACCAACTCAGAATTTGTGAACGTCGGG
CTGCAGGGACAGCCTTTCGAGCCAAAATGAGAATTGTAGTGTGGAACTGCCGGGGACTGGGGAATGGCCCGCCAGTGAGA
GGACTTCTGGATCTCCAGAAGCAGGTGGACCCCGACATCCTTTTCTTATCTGAGACTAAGCTTGATAAAAAGAGGATGGA
AAAGTTTAAGTGGAGGTTAGGTATGGGGAACATGATTGTGAGAGACTGTGAAGGAAAAAGTGGTGGATTGGCTTTATTAT
GGAAGAATGATGTACAAATTGAGCAGCATAACTACTCCAGGTATCACATTGATGCAGAAGTAGTGGAAA-GGATGGATTC
AGATGGCGTTTTACGGGCATTTATGGCGAGCCTGCAAGCGATAAAAGGAAAATAACTTGGAAATTGCTTCGCATCCTCAA
CCAACAACTTAACCTCCCATGGTTGTGTGCTGGTGATTTTAATGAGATCATGTATAACCATGAGAAGAAGGGGGGGCG-G
CTAGAGCACAAGGCCTAATGGAAAGATTTAGAGAGGCCCTAGCAGATTGTGGATTGAGGGACTTAGGCTTTGATGGGG
>chr6B_2113
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---------------------------------------------------------------------------AGGAA
AAGATTGTCTCATTCACATACGAGTATCTCTTCCCGACTTCTGTTATAGTTGTGGAATTATTGGACATACTGAAAAATCA
TGCCCAACTAGATCTAGAAGAACGGGGTCTAGGCAATTTGGACCATGGCTGCGTGCAAATATGTACAAGGGGAGCTCAAG
CGAAGAAAGAAGTAGGGCTCCAAATAATAAAGGAAAATTCTGGTCAAGCAATAGTACAGGT-AGCAAGGGGAGCAAACAG
GGAAGCGATGGGCCGTTCTGGTGAAGAGATGTACCAAGCGAAGATGATGAGGGAGGACC---A---AGGAGTGATGGGAA
TGAAGTTACAAGTCCTCTCAAATTAAAACAGTATAAGAACCAGGTAGTAGGGGAGGAGAAAAGACTGGATCGCGGCGGAA
TAG-----------------------------------------------------------------------------
-TGATACAAGACCCCACTGAAAAGGTACAAAGAACGGAAAGAGAACCAAGTAAGGCTGAAGAGATGAATGACACTATCAC
AAAAGTAATACATGATATCCAAGGGTCAACAAAGGTTATTTTGGAGCAGAACAAGGAAGAGTCCCAGAACAAAGAAGGAA
ATATATTTATGGAGTCAGGAAAAGGCATAAAGAGAGGTACTTTCAAGCGAATTGAGAGGAAGGAAAGAAACCAGTAGAAC
CAATTAAGTACGACAGAACAGAAGAAGAGA----AAGGTAATTATGATGGAAATTGATGAAGATATAGAACTAGCAAAGA
AAGCAAAGATGGAAGTCGAGGAGGGTGAAGGAAAAGAGGAGAA------------CAACTCTGAAACTGCAAACGCCGGG
CTGCAGGGACAGCCTGGCGAGCCAAAATGAGAATTGTAGTATGGAACTGCCGGGGATTGGGGAATGGCCCGGCGGTGAGA
GGACTTCTGGATCTTCAGAAGCAGGTGGACCCCGACATCCTCTTCTTATCTGAGACCAAATTGGATAAGAGGAGGATGGA
AAAGTTTAAGTGGATGTTACAGATGGGAAACATGATAGTGAGAGATTGCGAGGGGAAGAGTGGGGGATTGGCATTGTTTT
GGAAAAAAGAAGTAAATTTGGAGCTGCTCAACTATTCTAAGAATCATATTGACGCAAAAATAGTGGAAAAGGATGGGTTT
AAATGGCGATTTACAGGTATTTATGGAGAGCCAGCGAATGATAAAAGGAATATAACTTGGAAATTACTTCGCGTAATAAG
TCAGCAGCTGAACCTTCCATGGTTGTGTGCGGGCGACTTTAATGAGATCATGTATAACCATGAGAAGAGAGGGGGGCCAG
CCAGAGCTCAAAGCCAAATGGAAAATTTTAGAGCAGCCCTAGCAAGCTGTGGGTTGAGAGATTTGGGCTATGTGGGG-
>SNPs
--------S-----------------------------------------------------------------------
-------------------------------------------------------------------------------S
---------------------------------------------------------------------------S----
---------------S------------------S------------------S--------------------------
--S------------------------------------S---------------------------S------------
----------S-------------------------------------------------S-------------------
---------------------------------S--------------------------------------------S-
-----SS-------------------------------------------------------------------------
---------S--------------S-------------------------------------------------------
--S-----------------------S---------------------------------S-------------------
----------------S-----------------------------------S---------------------------
----------------------------------S--------------------S------------------------
S--------------------S---S---S---S-----S---------------------------S------------
--------S---------S---------SS--S---------S----------S-----S--------------------
------------SSSSSSSSSSS--------------S--S------------------S--------------------
-------S-----------------S--S------------S--------SSS-----S---------------------
----------SS-S-S-S--S-------SS--------------------------S--------------SS-------
-----------------------------S---------S-----------S--S-------------------------
------S---SS---S----S-S----S-----S-S-----------S-S-S------S--------------SSS--SS
------------------S---------------S-----------------------------------S--------S
---S-------------------SS----------S-----------S---------------------S----------
--------SSS--------------------S--------------------------S---------------------
--------------------------------------------------------------------------------
--------------------------S---------------------------------S--------S----------
--------------------------------------------------S-----------------------------
------------S---------------S-------------------------S----S---S-------S--------
-------------------SS-------------------SS---------------SSS----------S---------
-------------------------------------------------------------------------------S
------------------------------------------S------------------------------S------
-----------------------------------------S----S--------------S------------------
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----------------------------------S---------------------------------------------
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-----------------------------------------------------------------------------S--
-------------------------SSSS-SSSS----------------------------------------------
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-----------------------------------------------------------S--------------------
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>forward_294
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----------------------------------CGGGTAGCCTTCTCTTTCCA--------------------------
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>reverse_1352
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-----------------------------------------------------------------------CGGAACAAC
CTGGTGAGGAA---------------------------------------------------------------------
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>forward_1291
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-----------------------------------------------------------------------CCTGATTCT
CCTTCCCACCG---------------------------------------------------------------------
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>reverse_2382
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-------------------------------------------------------------AACAAGGGGAGCAAACAGG
G-------------------------------------------------------------------------------
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>forward_1499
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---------------------------------------GGACCTGATGGCAGCATACA---------------------
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>reverse_2675
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----------------------------------TGGAAAGAGAACCAAGTAAGGCT-----------------------
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------------------------------------------------------------------------------
