>input_sequence_51187
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---ATGAAGCAGACG-----CAGCTTCGTGGCGCCTC---TCGTCTCCCCGGCCGACATGCCACCGCCCGGCCTATAAAA
CCCACACCCTCCCTTATCCACCT---CAACATCAAAATCAATCGTCTCGCACTTTCGGTACCAAACC-----CAAC----
--CACCTCCATCATCTCCCTGCACCCCCGAGCCCACGCTTCCCCTGTCCCGCAGCACCAGTACCAGCACCACCGGCTAGC
CATGGACGACAAGGACTACGCCACACCGCCCACCGCTCCCGCGCCACAGGCCGAGGCCGGGGCGCCGCAGCACTCCTACC
CCCCGACGCACCACGCCATGGACGGCAAGGACGCCACCGCGCCGCAGCCGGGACCGCAGGTCTCCTATCCCTTGATGGAA
CACGCCATCGACGGTCTGGACGCCACCGCGCCACAGCCGGGAGCGCCGCCGCATCCGTCTTCCCCCCTGACGCAGCAGGC
CATGGAGATGGAGGGCAAGTACGCCGCCCCGCAGCCGGGCACGGGAGCGACGCCGCCCTCGTCCTCCCCCCTCATGCAGC
AAGCCGTCGACGGCAAGGACGCCGCCCAGGCACCGCCCGGCGCGTCAGTGCCGCCCGCCGAGTCGGCGAGGTGGGGCACG
CGGCAGATGGGCCCGCCGGCGGCGCCGGGGGCGCACCCCGAGAACCAGCAGGCGGCGCAGTGGACGGCCTCGCGCGGCGA
TCAGGAGCTGCCGCCGTACGTCATCATGGGGGGACCGGAGCCGGCGGCGGCGGCGTCGGCGCGGCGGACGGACAAGGAGA
CCAAGGACAGCCCCATGGAGCACATCCTCGACTTCTTCAACGTCTGGAGCCGCAAGGCCGAGGAGCTCTCCTCCAACATC
TGGCTCAACCGTAAGCACAAACCCATCCAACCT------------TCATCACGATGATACTTTGCTTCTGCTCTGCTCAC
ACCGACCGTTTTCTTCT---TTGTTCCAGTCAAGACTGCGCCGTCCATGTCCGACGCGGCGATGGGGAAGCTGAGCCTGG
GCGCCAAGGCCATCACGGGGGGCGGCTTCGAGAAGCTGTACAAGCAGACCTTCGCCTCCGGCCCCGACGAGCACGTAAAG
AAGACGTTCGCCTGCTACCTGTCCACGGCCACGGGCCCCGTCGCCGGCACGCTCTACCTCACCAACATGAACGTCGCCTT
CTGCAGCGACCGCCCGCTCTCCTTCACCGCGCCGTCGGGCCAGACCGCCTGGAGCTACTACAAGATCATGATCCCGCTGG
CCAAGCTCGCCGCCGTCGAGCCCGTCACGGCCAAGGAGAGCCCGCCGGAGAAGTACATCCACATCGTCACCGTCGACTCG
CACGACTTCTGGTTCATGGGCTTCGTCAGCTACGACAAGGCCGTGCACCACCTGGGCGGGGCCGTCTCCTCGTCGCAGCA
CCACGGCGCCGCTCCCGCCGCGGCGCCGGCGCCGGC------ACCCACCTACGAGTGA----------------------
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>chr5A_1_TraesCS5A01G488500
CATCACCATGTTCTTGCGTGTGCGTAGGAATTTTTTTGAAATTACTACGTTCCCCAACAGTTATTTTATCATGGATCAGC
ATATTTGCATTCAAATTTAACCGGATTAAATTGAACTTGAACAACTGCTGGCTGAGTCATGGTGCCACCATATCGAACTG
ACCAGTGCAACCACGCTTATCTTTATGGGAAGGTCCTAACTGGGTCTATTGTCGTGCCTCTCGCCGGTGCCTCCAACTAG
GGAAGGTTATGGGCGCGCGCTACCCTGATCAGGTAGGCAGACATAAGCCTTGTGTGCCCGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTCGTGCCTCTTGCCGGTGCCTCCAACGTAACTGGGTTGCATCGCTAGTGACA
TGGCACCAGAGGTGGCTCGCTGTCGCTAGTCGGCCGCTGTCGACACAGCGGCAGATTTCCCTTTTTTTAATAGGTGAAGA
CAAAACAAATTTGAAAAAGGTACTGTACATTCTTTTCACATCTAAATTCATCTTTTTTGTTTCTTCATGTATATTTCAAA
TTTTGATCTGAATTTTTTAGAGGTTGTCTTGACAAGTTTAAATTTGATTTTTTTAAATTGATATCATGGTAGCATATAAG
GGCCGGTATCAGCTGATATTTTCCCCGCTGTTGACACATAGGGCCAGATTTCTTTTTTCTTCATTCAAAAATGCCAAGAA
-AAAACAGAACCTTTCAAAAAAGAAGACAAAACAAATTTGAAAAGATACACTTTC---AATATAAAATCGAAAAGCGCGC
GGCTCTAGGCCTCTAGCCAGCTCAGCAACGACATAAT----------------------------------ATGTCCATG
TCACGATCGAGATATTTCCATGAGAAAAGTCGTTTCCCTCGGAAGATTCTAAACTGGCTCGAGGCCACGTTGTCGCCGCG
GCTAAGCGTCCGACCTCCACGTATTCCCGCTTCCCGAAGGCTTCGG-----CCTACCATGCCCAAGCTGGAAGGTCCTTG
CTCATGAAGCAGACG-----CAGCTTCGTGGCGCCTC---TCGTCTCCCCGGCCGACATGCCACCGCCCGGCCTATAAAA
CCCACACCCTCCCTTATCCACCT---CAACATCAAAATCAATCGTCTCGCACTTTCGGTACCAAACC-----CAAC----
--CACCTCCATCATCTCCCTGCACCCCCGAGCCCACGCTTCCCCTGTCCCGCAGCACCAGTACCAGCACCACCGGCTAGC
CATGGACGACAAGGACTACGCCACACCGCCCACCGCTCCCGCGCCACAGGCCGAGGCCGGGGCGCCGCAGCACTCCTACC
CCCCGACGCACCACGCCATGGACGGCAAGGACGCCACCGCGCCGCAGCCGGGACCGCAGGTCTCCTATCCCTTGATGGAA
CACGCCATCGACGGTCTGGACGCCACCGCGCCACAGCCGGGAGCGCCGCCGCATCCGTCTTCCCCCCTGACGCAGCAGGC
CATGGAGATGGAGGGCAAGTACGCCGCCCCGCAGCCGGGCACGGGAGCGACGCCGCCCTCGTCCTCCCCCCTCATGCAGC
AAGCCGTCGACGGCAAGGACGCCGCCCAGGCACCGCCCGGCGCGTCAGTGCCGCCCGCCGAGTCGGCGAGGTGGGGCACG
CGGCAGATGGGCCCGCCGGCGGCGCCGGGGGCGCACCCCGAGAACCAGCAGGCGGCGCAGTGGACGGCCTCGCGCGGCGA
TCAGGAGCTGCCGCCGTACGTCATCATGGGGGGACCGGAGCCGGCGGCGGCGGCGTCGGCGCGGCGGACGGACAAGGAGA
CCAAGGACAGCCCCATGGAGCACATCCTCGACTTCTTCAACGTCTGGAGCCGCAAGGCCGAGGAGCTCTCCTCCAACATC
TGGCTCAACCGTAAGCACAAACCCATCCAACCT------------TCATCACGATGATACTTTGCTTCTGCTCTGCTCAC
ACCGACCGTTTTCTTCT---TTGTTCCAGTCAAGACTGCGCCGTCCATGTCCGACGCGGCGATGGGGAAGCTGAGCCTGG
GCGCCAAGGCCATCACGGGGGGCGGCTTCGAGAAGCTGTACAAGCAGACCTTCGCCTCCGGCCCCGACGAGCACGTAAAG
AAGACGTTCGCCTGCTACCTGTCCACGGCCACGGGCCCCGTCGCCGGCACGCTCTACCTCACCAACATGAACGTCGCCTT
CTGCAGCGACCGCCCGCTCTCCTTCACCGCGCCGTCGGGCCAGACCGCCTGGAGCTACTACAAGATCATGATCCCGCTGG
CCAAGCTCGCCGCCGTCGAGCCCGTCACGGCCAAGGAGAGCCCGCCGGAGAAGTACATCCACATCGTCACCGTCGACTCG
CACGACTTCTGGTTCATGGGCTTCGTCAGCTACGACAAGGCCGTGCACCACCTGGGCGGGGCCGTCTCCTCGTCGCAGCA
CCACGGCGCCGCTCCCGCCGCGGCGCCGGCGCCGGC------ACCCACCTACGAGTGATTGGCTGATTGCCGCCGTGTTC
CATGTTCGTGGCTCTCTGCTTTTCATTGCCGTGTGTGTGCGCTCTGTTTTTCGGGCGGATCTGTTTAGTGAGTGCTCTGG
TGTGTAGTGGATTTTCGTGTGGTTATGTGCTGTTGTCTATACGC------------------------------------
--------------------------------------TTGTGTTCTTCGGAGTTGGACAATGTATTTGAAATTTGAGCA
TGTTTGCTAGTTATCCATTCTATGCTGTCAGGTTTCTAACATGACACGTGTGATTGATAATCCAAAGTTACTTATGGCTT
GCCCTAGCCACCACCCGCCGTCTCCCCCTCCCGGTGACGTCGGAGGCGGCCTCGGGAAGTCTTGGAGGTCTGTTGTGATA
GACCCTCTAAGATCACCTAGGC---TAGATTAGGTCGGTAGC-AATCTCTATTCA-TTGAGCTGTCTATGCATCCGAGAG
AGAGAGAAACATGGAGAGATGGGGACGA-AGAGGAGTACCTTCTCCTTGGCTCGATGAACCCGTGGTGCCGGACATGGTG
GAGGG-CAATGGTGATGGCAGGGTGTGGTCTGAGGCGGCGGCG------GCGGCGGACCTTCCCGTCACTATCTA-----
---------GGTA-GG-TGTGTCGGTGGGGTGTACGGCTCACGACAAACCTCGTGTTGTGTGCCGTCGG-CCCCACCTCT
TTATCC--A--ACGCAGGTGACAGGGGCC-GTCAACCATAGTGGGTTGGATGCCTGCGACCAGGGCGTGGAT-TAAGGGT
CCGGTGGGTCGTTGGGCTCATACGGGAGGAG--ATCAACCTAACATTTTTTTT-TTGATCTCAATTTTTATTTTTAACCA
TATAC-TTTGTACTTTACTCATTTCATCACATATCAATACATAAAAGCATGTTTTATCGTCACAGCTCAATAGCCGATAG
AATCAGACAACCACAACATACCTCTCTGTTTTGAAACAAATACTGTTTCTTTT-AGGCCTCTCATGATCTAGAAATCATA
GCCTTTCTCTTAAACCCATGCTGGCTAAGTGTTCCTTGAACACATTGGGTGGT
>chr5D_665
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------------------------CCGCTGTCGACACATAGGGGCAGATTTCTTTTTTTCCCCTTAAAAAATGAGAAGAC
GAAAACAAATCCTTTCAAAA---AAGACAAATCAAATTTGAAAAGATACCTTTAAATAAATATAAAATCGAAAAGCTCAT
GG--------CTCCAGCCAGCTCAGCAGCGGCATGATCTCAGCGCACACCTGTCGTGCTTTGCTCTATCCAATGTCCATG
TCAGGATCGAGATATTTCAGTGAGGAAAGTCGTTTCCCTCGGAAGATTCTAACTGGGCT-GAGGCCACGTTGTCGCCGCG
GCTAAGCCTCCGTCCTCCACGTATTCCCGCTTCCCGAAGGCTTCGG-----CCTACCATGCCAGAGCTGGAACGTCCTTG
CTCATGAAGCAGACGACACGCAGCTTCGTGGCGCCCC---TCGTCTCCCCGGCCGACATGCCACCGCCCGGCCTATAAGA
ACCTGCCCCGCCTCTGTCCACCTCAACACCATCAGAGTCAATCGTCTCACACTTTCGGTTCCAAACCAAATCCAAC----
--CACCTCCCTGCT----------CCCCGTGCCCACGCTTCCCCTGCCCCGCA-CACCAGCACCACCAGCTAGC---AGC
CATGGACGGCAAGGGCTACACCACACCGCCCACCGCCCCCGCGCCACAGGCCGAGGCCGGGGCGCCGCCGCACTCCTACC
CCCCGACAGAGCACGCCATGGACGGCAAGGACGCGGCCGCGCCACAGCCGGGATCGCAGGTCTCCTATCCCTCCATGGAA
CACGCCATGGACGGCCTGGACGCCACCGCGCCACAGCCGAGAGCGCCGCCGCACCCGTCCTCCCCCCAGACGCAGCAGGC
CATGGAGATGGAGGGCAAGTACGCCGCCCCACAGCCGGGCACGGGAGCGACGCCGCCCTCGTCCTCCCCCCTTACGCAGC
AATCCGTGGACGGCAAGGACGCCGCCCCGGCACCGCCCGCGGA------------CGCCGAGTCGGCGAAATGGGGCACG
CGGCAGATGGGCCCGCCGGCGGCCCCGGGGGCGCACCCCGAGAACCAGCAGGCGGCGCAGTGGACGGCCTCGCGCGGCGA
CCAGGAGCTGCCGCCGTACGTCATCATGGGGGGGCCTGAGCAGGCGCCGGCGGCGTCGGCCCGGCGGACGGACACGGAGA
CCAAGGACAGCCCCATGGAGCACATCCTCGACTTCTTCAACGTCTGGAGCCGCAAGGCCGAGGAGCTCTCCTCCAACATC
TGGCTCAACCGTAAGCACAAACCAATCCAACCTCCCTCACGTTCTTCATCACGATGACACTCTGCTTCTGCTCTGCTCAC
ACCGACCGTTTTCCTAATTGTTCTTGCAGTCAAGACGGCGCCGTCCATGTCGGACGCGGCGATGGGGAAGCTGAGCCTGG
GCGCCAAGGCCATCACGGGGGGCGGCTTCGAGAAGCTGTACAAGCAGACCTTCGCCTCCGGCCCCGACGAGCACGTGAAG
AAGACCTTCGCCTGCTACCTGTCCACGGCCACGGGGCCCGTCGCCGGCACGCTATACCTCACCAACATGAACGTCGCCTT
CTGCAGCGACCGCCCGCTCTCCTTCACCGCGCCGTCGGGCCAGACCGCCTGGAGCTACTACAAGATCATGATCCCGCTGG
CCAAGCTCGCCGCCGTCGAGCCCGTCACGGCCAAGGAGAGCCCGCCGGAGAAGTACATCCACATCGTCACCGTCGACTCG
CACGACTTCTGGTTCATGGGCTTCGTCAGCTACGACAAGGCCGTGCGCCACCTGGGCGGGGCAGTCTCGTCGTCGCAGCA
CCACGGCGCCGCTCCCGCCGCGGCGCCGGCGCCGGCACCAACACCCACCTACGAGTGATTGGCTGACTGCCGTCGCGTCA
GTATCCGC-GGCTCTGCT-TTTTTATCGCCGTGTGTGTGC--TCTGTTTTTCGGGCGGATCTGTTTAGTGAGTGCTCTCG
TGTGTAGTGGATTTTCGTGTGGTTATGTACTGTTGTCTATACGCTTTTGTCGAAATTTAGCGTCATCTTCTTAATTCCGT
TCAAAAATATTGTTCTCCACCTCTTGCCCGATGTATATTTGTGTTCTTCGGAGTTGGACAATGTATTTGAAATTTGAGAA
TGTTTGCTAGTTACCCATTCTATGCTGTCAGGTTTCTAACATGACACCTGTGATTGATAATCCACAGT-ACTTATGACTT
GCC-----------------------------------------------------------------------------
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>chr5B_898
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-------------------------------------------------------GGCGCGAGGACACGTCGTCGCCGCG
GCTAAGCCTCCGCTCTCCACGTACTCCCTCCTCCCGAAGGCTACCGCCTACCCTACCATGCCAAAGCTGGAAGGTCCTTG
CTCATGAAGCAGACGACACGCAGCTTCGTGGCGCCCCTCGTCGTCTCCCCGGCCGACATGCCACCGCCCGGCCTATAAAA
CACAGTCCCTCCCTTATCCACCT---CAACATCAAAATCAATCGTCTCACACTTGCGGTTCCAAATCAACCACCGCCACC
ATCACCTTCCTGCT----------CCCCGAGCCCACGCCCCCCCTGCCCCGCAGCACCAGCACCACCAGCTAGC---AGC
CATGGACGGCAAGGGCTACACCACACCGCCCACCGCCCCCGCGGCGCAGGCCGAGGCCGGGGCGCCGCCGCACTCCTACC
CCCCGACGCAGC---------ACGGCAACGACGCCGCGGCGCCACAGCCGGGATCGCAGGTTTCCTATCCCTCGATGGAA
CACGCCATGGACGGTCTGGACGCCACCGCGCCACAGCCGGGCGCGCCGCCGCACCCGTCCTCCCCCCTGACGCAGCAGGC
CATGGAGATGGAGGGCAAGTACGCCGCCCCGCAGCCGGGCACGGGAGCGCCGCCGCCATCGTCCTCCCCACTGGCGCAGC
AATCCATGGACGGCAAGGACGCCGCCCCGGCACCGCCCGCGGA------------CGCCGAGTCGGCGAAATGGGGCACG
CGGCAGATGGGCCCGCCGGCGGCCCCGGGGGCGCACCCGGAGAACCAGCAGGCGGCGCAGTGGACGGCCTCGCGCGGCGA
CCAGGAGCTGCCGCCGTACGTCATCATGGGGGGGCCGGAGCCGGCGCCGGCGGCATCCACGCGGCGGACGGACAAGGAGA
CCAAGGACAGCCCCATGGAGCACATCCTCGACTTCTTCAACGTATGGAGCCGCAAGGCCGAGGAGCTCTCCTCCAACATC
TGGCTCAACCGTAAGCACAAACCCATCCAACAAATCCAAC---CTTCATCAAGATGATACTCCGCTTCTGCTCTGCTCAC
ACCG----TTTTCTTCTTTGTTCTTGCAGTCAAGACGGCGCCGTCCATGTCGGACGCGGCCATGGGGAAGCTGAGCCTGG
GCGCCAAGGCGATCACGGGGGGCGGCTTCGAGAAGCTGTACAAGCAGACCTTCGCCTCCGGCCCCGACGAGCACGTGAAG
AAGACGTTCGCCTGCTACCTGTCCACGGCCACGGGGCCCGTCGCCGGCACGCTCTACCTCACCAACCTGAACGTCGCCTT
CTGCAGCGACCGCCCGCTCTCATTCACCGCGCCGTCGGGCCAGACCGCATGGAGCTACTACAAGATCGTGATCCCGCTGG
CCAAGCTCGCAGCCGTCGAGCCCGTCACGGCCAAGGAGAGCCCGCCGGAGAAGTACATCCACATCGTCACCGTGGACTCG
CACGACTTCTGGTTCATGGGCTTCGTCAGCTACGACAAGGCCGTGCGCCACCTGGGCGGGGCCGTCTCGTCGTCGCAGCA
CCACGGCGCCGCTCCCACCGCGGCGCCGGCGCCGGC------ACCCACCTACGAGTGATTGGCTGATTGCCGTCGTGTCC
CTGCCCGC-GGCTCTCTGCTTTTCATTGCCGTGTGTGTGC--TCTGTTTTTCGGGCGGATCTGTTTAGTGAGTGCTCTCG
TGTGTAGTGGATTTCCGTGTGGTTATGTACTGTTGTCTATACGCTTTTGTCGAAATTTAACGTTATCTTCTTGATTCCTT
TAAAAAATATTGTCCTCCACCTCTTGCCCGATGTATATTTGTGTTCTTCGGAGTTGGACAATGTATTTGAAATTTGAGCA
TGTTTGCTAGTTATCCATTCTATGTTGTCAGGTTTCTAGCATGTCACCTCTAATCCACAGT------T-ACTTATGGCTT
GCC-----------------------------------------------------------------------------
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>chr6D_2795
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--------------------------------------------------------------------------GTGATA
GACTCTTTAAGATCACCTAGGC---TAGATTAGGTCGGTAGT-AATCTCTATTCA-TTGATCTATCTATGCATCAGAGA-
-GAGAGAAACAGAGAGAGATGGGGTGGA-AGAGGAGTACCTTCTCCTTCGCTCGATGAACCCGTGGTGCCGGACATGGTG
GAGGG-CGACGGCGATGGCAGGGTGTGGTCGA----GGCAGCG------ACGGCGGAGCTTCCCATCACTACTACGCTGA
-CCTAGATCGTTA-GG-TGTGTCGGTGGGGTGTATGGCTCGCCACGAACCTCGTGCTGCATCCCGCCGGCCCTCACATCC
TTATCT--A--GCGTAGGTGATAGGGGCCCGTCAACCATAGTTGGTTGGGCACCTCCGATCAGGGCGCAGGTCAAAGGGC
CCGGTGGGCCGTTGGGCCCACACGGGAGGAG--ATTAACCTAACATTCTCCCCCTTGATCTCAACTTTTACTTTTAACCA
TACAC-TTTTTACTATACTCATTTCATCACAGATCAATACATAG-AGCATGTTTCATCGTCACAGCTGAATTGCCGATAG
AATCAGACATCTACATCATACCTCTCTATCTTGAAACAAATTATGTTCCTTTT-GGGCCTCTCATGATCCAGGAATCATA
GGCTTTCCCTGAAACCCATGACGTCTAAGTGTTCCTTGAACACATTGGGTGGT
>chr5D_2796
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---------------------------------------------------------------------------TGATA
GACTCTCTAAGATCACCTAGGCGGCTAGATTAGATCGGTAGT-AATCTCTATTCA-TTGATCTGTCTAGTCATTTGAGAA
-GGGAGGAC---AGAAAGATGGGGAAGT-AGAGGAGTACCTTCTCCTTGGCTCGATGTGCCCGTAGTGCCGGACATGGTG
GAGG--CGACGGTGATGGCAGGGTGTGGTCGA----GGCGGCG------GCGGTGGAACTTCCCGGCACTACTGCGCTAA
-CCTAGATCGGTA-GG-CGTGTCGGTGGGGTGTACGGCTCGCGACGAACCTCGTGTTGCATGCCGCTGGCCCCCACCTCT
TTATCT--A--GCGCAGGTGACAGGGGCC-GCCAACCATTGTTGCTTGGGCGTCCCTGATCAGGGCACGGATCTAAGGGC
CCGGTAGGCTGTTGGGACCACACGGGAGGAG--ATCAACCTAACATTCTCCTCCTTGATCTCAACTTTTACTTTTAATCA
TACC----TTTATTTTACTCGTTTCATCACAGATCGATACATAG-AGCATGTTTCATCGTCACATCTCAATTGCCAATAA
AATCAGACAGCTACAACATACCGCTCTGTCTTGAAACAAATTATGTTCCTTTT-GGGCCTCTCATGATCGAGGAATCATA
GGCTTTCCGTTAAACCCATGTCGGTTAAGTGTTTCTTGAACAAATTGAGTGGT
>chr6D_2796
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---------------------------------------------------------------------------TGATA
GACTCTCTAGGATCACCTAGGC---TAGATTAGATCGGTAGC-AGTCTCTATTCA-TTGATCTGTCTATGCATCCGAGT-
-GAGAGAAACATAGAGAGATGGGGAGGA-AGAGGAGTACCTTCTCCTTGCCTCGATGAACCCGTGGTGCCGGACATGGTG
GAGGG-CGACGGTGATGGTAGGGTGTGGTC----------GAG------GCGGCGGAGTTTCCTGTCACTACTGCGCTGA
-CCTAGATCGGTA-GG-TGTGTCGGTGGGATGTACGGCTCGCGACGAACTTGATGTTGTGTGCCGCCGGCCCCCACCTCT
TTATCT--A--GCTCAGGTGACAGGGGCCCGTCAACCATAGTGGGTTGGGCACCCCCAATCAGGGCGCGGATCTAAGGGC
CCGGTGGGCCATTGGGCCCACACGGGAGGAG--ATCAACCTAACATTCTCCCCCTTGATCTCAACTTTTACTTTTAACCA
TATAC-CTTTTACTTTACTCGTTTCATCGCAGATCAATACATAG-AGCATGTTTCATCGTCACAGCTCCATTGCCGATAG
AACCAGACAGCTACAACATACCTCTCTATCTTGAAACAAA----------------------------------------
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>chr2D_2796
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---------------------------------------------------------------------------TGATA
GATCCTCTAAGAACACCTAGGC---TAGATTAGATCGGTAGC-AATCTTTATTCA-TTGACCTGTCTAAGCATGTGAGA-
-GGGAGAAC---AGAGAAATGGGAAGGAGAGAGGAGTACCTTCTCCTTGGCTCGATGAGCCCGAGGTGTCGGCCATGGTG
GAGGGGTGCCGACGATGGCAGGAAGTGGGTGA----G---------GTGGTGGTGGCGCTTCCCGTCAGCACTGCGCTTT
CCCTAGATCGGTAGGG-TGTGTCGGTGGGGTGTACGGCTCGTGATGAACCTCGTGTTTCGTGCCGCCAGCCCCCACCTCT
TTATCT--A--GCGCAGGTGACAGGGACCCGTCAACCATAGTGGGTTGGGCACCCCCGATCAAGGCGCGGATCTAAGGGC
CCGATGGGCCGTTGGGCCCACACAGGAGAGATCATCATCCTAA-ATTCTCCCCCTTGATCTCAAC-TTTACTTTTAACCA
TATAC-TTTTTACTTTACTCGTTTCATCACAGATTAATACATAG-ACCATGTTTCATCGTCACAACTCAATTGCCGATAG
AATTAGACAGCTACAACATACCTCTCTGTTTTGAAACAAATTCTGTTCCTTTT-GGGCCTCTCATGATCCAGGAATCATA
GGCTTTCCCTTAAACCCATGCTGGCTAAGTGTTCCTTGAACACATTGGGTGGT
>chr2D_2796
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---------------------------------------------------------------------------TGATA
GAATCTCTAAGATCACCTAGGC---TAGATTAGTTCGGTAGC-TAGCTCTATTCA-TTGATCTGTCTATGCATTCGATA-
-GAGAGAAACAGAAAGAGATGGGGAGGA-AGAGGAGTACCTTCTCCTTGGCTCGATGAGCCTGACGAGGTGGCCATGGTG
GAGGG-CGCCCGCGGCGACGGTGAGTG---------------GGCAGTGGCGGCGGTGCTTCCCGTCACTACTGCGCAGA
-CCTAGATCGGTA-GG-TGTGTCGGTGGGGTGTATGGCTTGCGACGAACCTCGTGTTGCGTGCCGCCGGCCCCCACCTCT
TTATAT--T--GTGCAGGTGATAGGGGCCCGTCAACCATAGTGGGTTGGGCGCCCTCGATTAGGGCGCGGATCTAAGGGC
ATGTTGGGCC-------C-ACTCGGGAGGAG--ATCATCCTAACATTCTCCCCCTTGATCTCAGC-TTTACTTTTAACCA
TATAC-TTTTTACTTTACTCGTTTCATCACAGATCGATACATAT-AACATGTTTCATCGTCACAGCTCAATTGCCGATAG
AATCAGACAACTACAACATACCTCT--GTTTTGAAACAAATTTTGTTCCTTTT-GGGCCTCTCATGATTCAGGAATCATA
GGCTTTCCCTTAAACCCATGCCGGCTAAGTGTTCCTTGAACACAATGGGTGGT
>chr6D_2805
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----CTCTAAGTTCACCTAAGC---TAGATTAGATCGGTAGC-TAGCTCTGTTCA-TTGATTTGACTATGCATCCGAGA-
-GAGATAATCAGAGAGAGATAGGGAGGA-TGAGGAGTACCTTCTCCTTGGCTCGATGAGCCCGTGGTGCCGGACATGGTG
AGGG--TGACGGCGACGGCAGGGAGTGCTTGA----AGTGGCG------GCGGCGGAGCTTCCCGTCACTACTGCGCAAA
-CCTAGATCGGTA-GGGTGTGTCGGTGGGGTATGCGGCTCGCGACGAACCTCGTGTTGCGTGCCGCCGGCCGCCACCTCT
TTATAT--T--GCGCAGGTGACAGGGGCCCGTCAACCATAGTGGGTTGGGCACCCCTGATTAGGGCGCGGATCTAAGGGC
CCGGTGGGCCGTTGGGCCCACACGAGAGGAG--ATCAACCTACCATTCTCCCCCTTGATCTTAACTTTT-CTTTTAACCA
TATAC-TTTTTGCTTTACTCGTTTCATCACGGATCAATACATAG-AACATCTTTCATCATCACAGCTCAATTGCCGATAG
AGTCAGACAGCTACAACATGCCTCTTTGTTTTGAAACAAATTCTGTTCCTTTT-GGGCCTCTCATGATCTAGGAATCATA
GACTTTCCCTTAAACCCATGCCGGCTAAGTGTTCCTTGAACACATTGGGTGGT
>chr3D_2807
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------CTAGGAACATCTAGGC---TAGAGATTATCGGTAGG-ACTATCTATATATTGGATCTGTCTAATCATTTGAGAA
-GGGAGGAC---AGAGAGATGTGGAAGA-AGAGGAGTACCTTCTCCTTGGCTCGATGAGCCGGTGGTGCCACACATGGTG
GAGGG-CGACGGTGATCGCAGGGTGTGGTT----------GAGGCGGCGGCGGCGGAGCTTCCCGTCACTACTGCGCTGA
-CCTAGATCGGTA--AGTGTGTTGGTGGGGTGTACGGCTCGCGACAAACCTAGTGTTGCGTGCCGCCGGCCCCCACCTCT
TTATAT--CTAGCGCAGGTGTCATGGGCCCATCAATCATAGTGGGATGAGCGCCCCCGATCAGGGCGTGGATCTAAGGGT
CCGGTGGGCCATTGGGCCCACACGGGAGGAG--ATCAACCTAACATTCTCCCCCTTGATCTCAATTTTTACTTTTAACCA
TATAC-GTTTTACTTTACTCGTTTCATCACTGATCAATACAAAG-AACATGTTTCATCGTCACAGCTCAATTGTCGATAG
AATTAGACAGCTACAACATACATCTCTATTTTGAAACAAATTATGTTCCTTTT-GGGCCTCTCATGATCCAGGAATCATA
GGCTTTCCCTTAAACCCACGCCGGCTAAGTGTTCCTTGAACACATTGGGTGG-
>chr3B_2807
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------CTAGGAACATCTAGGC---TAGAGATTATCGGTAGG-ACCGTCTATATATCGAATCTGTCTAATCATTTGAGAA
-GGGAGGAC---AAAGAGATGGAGAAAA-AGAGGAGTACCTTCTCCTTGGCTCGATGAGACCGTGGTGCCGGACATGGTG
GAGGG-CGACGGTGATGGCAGGGTGTGGTC----------GAGGCGGCGGCAGCGGAGCTTCCCATCACTACTGCTCTGA
-CCTAGAGCGGTA--GGTGTGTCGGTGGGGTGTACGGCTCGCGACGAACCTCGTGTTGCGTGTCGTCGGCCCCCACCTCT
TCATATATT--GCGTAGGTGACAGGGGCTCGTCAACCATGGTGGGTTGGGTGCCCCCGATCAGGGCGCGGATCTAAGGGC
CCGGTGGGCCGTTGGGCCCACTTGGGAGGAG--ATCATCCTAACATCCCCCCC--TGATCTGAAC-ATTACCTTTAACCA
TATACTTTTTTACTTTACTCGTTTCATCACAGATCAATACATAG-AACATGTTTCATCATCACAGCTCAACTGCCGATAG
AATCAGACAACTACAACATACCTCTCTGTTTTGAAACAAATTTTGTTCCTTT--GGGCCTCTCATGATCCAGG-ATCATA
GGCTTTCCCTTAAACCCATGTCAGCTAAGTATTCCTTGAACACATTGGGTGGT
>chr6B_2824
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--------------------------AGATTAG--CGGTAGTTTATCTTTGTTCA-TTGATCTGTCTATGCATCTGTGAA
-GTGAGGAC---AGAGAGATGGGGGGAAGA------TACCTTCTCCTTGGCTCGATGAGCCCGACGGGGTGGCCATGGTG
GAGGG-CGACGGTGGCGATGGTGAGTG---------------GGCAGTGGAGGCGGTGCTTCCCGTCACTACTGCGCTGA
-CCTAGATCGGTA--GGTGTGTCAGTGGGGTGTGTGACTCGCGACGAACCTCGTGTTGCGTGCCGCCCGCCCCCACCTCT
TTATAT--C--ACACAGGTGACAGGGGCCCGTCGACCATAGTGGGTTGGGCGCCCCCGATCAGGGCGCCGATCTAAGTGC
CCGGTGGGCCGTTGGGCC-ACTCGGGAGGAG--ATCATCCTAACATTCTCCCCCTTGATCTCAACTT-TACTTTTAACCC
TATAT-GTTTTACTTTACTCGTTTCATCATAGATCAATACATAG-AACATGTTTCATCGCCACAACTCAATTGCCAATAG
AATTAGACAGCTACAACATACCTCTCTGTTTTGAAACAAATTATGTTCCTTTT-GGGCCTCTCATGTTCGAGGAATCATA
GGCTTTCCCTTAAACCCATGCCAGCTAAGTGTTCCTTGAACACATTGGATGGT
>chr6B_2841
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--------------------------------------------ATCTTTGTTCA-TTGATCTGTGTATGCATCTGTGAA
-GTGAGGAC---AGAGAGATGGGGGGAAGC------TACCTTCTCCTTGGCTCGATGAGCCCGACGGGGTGGCCATGGTG
GAGGG-CGACGGTGGCGATGGTGAGTG---------------GGCAGTGGCGGCGGTGCTTCCCGTCACTACTGCGCTGA
-CCTAGATCGGTA--GGTGTGTCAGTGGGGTGTGTGACTCGCGACGAACCTCGTGTTGCGTGCCGCCCGCCCCCACCTCT
TTATAT--C--ACACAGGTGACAGGGGCCCGTCGACCATAGTGGGTTGGGCGCCCCCGATCAGGGCGCCGATCTAAGGGC
CCGGTGGGCCGTTGGGCC-ACTCGGGAGGAG--ATCATCCTAACATTCTCCCCCTTGATCTCAACTT-TACTTTTAACCC
TATAT-GTTTTACTTTACTCGTTTCATCATAGATCAATACATAG-AACATGTTTCATCGCCACAACTCAATTGCCAATAG
AACTAGACAGCTACAACATACCTCTCTGTTTTGAAACAAATTATGTTCCTTTT-GGGCCTCTCATGTTCGAGGAATCATA
GGCTTTCCCTTAAACCCATGCCAGCTAAGTGTTCCTTGAACACATTGGATGGT
>chr3D_2903
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---------------------------A-ACAGGAGTACCTTCTCCTTGGCTCGATGAGCCCGTGGTGCCGGACATGGTG
GAGGG-CGACGGTGATGGCAGGGTGTGGTC----------GAGGCGGCGGCAATGGAGCTTCCCTTCACTATCGCGCTAA
-CCTAGATCGGTA--GGTGTGTCGGTGGGGTGTACGGCTCGTGGCAAACCTCGTGTTGCGTGCTGCCGGCCCCCACCTTT
TTATAT--CTAGCGCAGGTGACAGGGGCCCGTTAACCATAGTGGGTTGAGCGCCCCCGATCAGGGCGCGGAGCTAAGGGC
CCGGTGGGCCGTTGGGCCCACACGAGAGGAG--ATCAACCTAACATTCTCCCCCTTGATCTCAACTTTTACTTTGAACCA
TATAC-TTTTTACTTTACTCGTTTCATCATAGATCGATACATAG-AACAGGTTTCATCGTCACAACTCAATTGCCGATAG
AATCAGACAGCTACAACATA-CTCTCTATTTTGAAACAAATTCTGTTCCTTTTTGGGCCTCTCATGATCCAGGAATCATA
GGTTGTCCCTTAAACCCATGCCGGCTAAGTGTTCCTTGAACACATTGGGTGGT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS-------S-----------S--------------SSS-S--S-------SS----S
-------S-S----------SSS--------S-----------------SS--SS---------------------S-SS
--SSSSSSSS---S-------------S--S---S---------------------------------------------
---S--------------SS----S---------------------------SSS-------------------------
-------S----S-------------------------------------------------S-----------------
-----------------------------------S--------------------------------------------
----SS------------------------------------------S----------S--------------------
---------S-SS-SSSSSSSSSS----------------------S-------------S----S--S-SSSSSSS---
--------S-----S----S----------------S-------------------------------S-----------
----------S------------------------S-------S---------S------------------S-------
--------S--------------------------------------------S-----S--------------------
------------------------------------------------------------------------S-S-----
--S----S-------------------S-----------SS-SSSSSSSSSSSSS--------------SS---------
-----------------------S--------------------------------------------------------
S--------------------------------S------------S---------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
----------------------S--S----------S--------------S----------------------------
----------------------------------------------------------------------------S---
-----------------------------------S--------------------------------------------
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----------------------------------------------S---------------------S-----------
------------------------------------------------------------------------S-----S-
-SSSSSSSS-------------------------------SS------------------------------------S-
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S----------------S---S-----------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
------------------------------------------------------------S------------------S
S-----------S------------S------------------------------------------------------
-------S-S--------------------SSSSSS---------------------S---------------SS-----
----------------------------------------S---------------------------------------
-----S-------------------------------------------S-----S---S--------------------
--------S--------S--S--------------------------S-SS-S-----------------S---------
---------S---------------------S-----------SS---------S----------------S--------
-----------S-----------------------------S-----S------S-----------------S-------
-S-----S---------------------------------------------
>forward_224
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--------------------------------------------TCTATTGTCGTGCCTCTCGC----------------
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>reverse_1982
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-------------------------------------------------------------TTGCTTCTGCTCTGCTCAC
A-------------------------------------------------------------------------------
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-----------------------------------------------------
>forward_398
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----------------------------------------------------------CTGGGTTGCATCGCTAGTGA--
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>reverse_2157
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----------------------------------------------------------------------------AAAG
AAGACGTTCGCCTGCT----------------------------------------------------------------
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>forward_1222
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--CACCTCCATCATCTCCCTGC----------------------------------------------------------
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>reverse_2932
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---------------------------------------------------TCGGGAAGTCTTGGAGGTCT---------
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-----------------------------------------------------
