>input_sequence_51068
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----------------------------------------------------------------ATGAAGCCCAGCAGGG
CAGCAATGTTGGCCATGGTAGGCCTAGTGGCCGCGGTGCTGTCCCCCGCGGCCTTGTCCACGGCGGCGCCGTCGTTGATC
TCTTTGCCCAACTCCGACAGCCCCTCCTATGACTTCCACGACGAGTCATGTCCAAACCTGTGGCAGATGGTGCACGACGC
CGTGGAGGAAGCAATCAAGGAGGATATCGGTGTTGTCGCCGGCCTCCTCCGCGTCATGTTCCACGACTGCTTCCCACAGG
TACGCAACCCTAGCTACCTCTTATTACTTGTTACTTTGTTGGCCTTGAGAGATGTTAAGTGCGCCGTAGCTTGGAGAGTG
TTGTGCGGTTAAGCTGGACAGGATGCTGGTTGTATTATCAGTTTCAAGCGATTGAATTGGGGGCGTTTTTGTCCCTAAGG
TAAAAAAAAAGAGGTTGATTTCAGGAGGATCCTGATTATGTCCAGACATACGATTTTGCTAATCCCAAGATAACTAGCTA
GAACTACTTTATGTCCAAGTTGATTTATATCAGTTGAGTCTGGTGAAAAGTACAAGTTTCACTTTTCAGAGTGTATTTTT
GTTGGACATTTAGAGAGTGTATTTAGTAGACATAATAAAATCTCAGTCAACTTTGATGGACGGATCCATGGATTTATGGA
TTTGTAACCACAAATACTATGTATGCAGGGCTGTGATGCGTCGCTTCTACTGTCTGACAAGTTCTGGAGCGAGCTGAACA
TGCCTCAGAACAATGGAATCAGAAGGAACGCAGTGTATCTCATTGAGAGCATTCGCGTCAAGGTTCAAGATACCTGCGGG
CCCACTGTCTCCTGCACGGACATCATGAACCTCGCCACCCGCGAGGCTGTGATGCACTTCGAGGTGCCAGGCTACGAGGT
GCCGCTTGGTCTACTGGATAGCCGCGCGCCCGCTCCCAGAGAGAACGTAGAGCAGCTGCCGGGCCCCGACTTCAACACCA
CCCAGCTCATCGAATCCTTCCAGAGTCGCGGTTTCGACATCACCGACGTCGTGGCCCTCTCCGGTGCGCACACGATCGGG
AGGTCAAGCTGCGGCAGCTTCAGGAACCGCTTTGGAGAGAACGCCGACTTTGTTCGTTGGCTCCAGGGCACCTGCGCCAG
AAACCCTAACCACCTACAGGACCTGGATGTGACCACCCCTGAGAAGTTCGACAACGTGTACTACAACAACCTGAAGGAGG
GGAAGGGGGTTCTCAACTCCGACATGGCCCTCACACGCGACGCCAGCACCAGCTGGCTGGTCGACGGCTTTGCACAGGAC
CAAGGGTGGTTCTTTTCCCAGTTCGGCACCTCCATGAGGAAGATGGCGCATTTGCCGAGTGAGTTCGGAAGGAACGGCGA
GATCCGCAAGTACAGCTGCTCCTGGGCTAACTTGCATGGCCCGAAGGGGCCTACTGCTGACCTTGCGGCATCAGCTTGA-
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------------------------------------------------
>chr2A_1_TraesCS2A01G572700
GTACTCAGCCTACATGCAAACCTGTTGGTTGAGGGATCGAGCCCCACTTAGTGCTAATTTTTTTGCGCACAGAGGAAAAA
AAAGATCACGCGTGTGGGAGAAGCGGAACTGCTAGATGGGATCGTGAGAAGATCGTGCGCGGGAGAAGCGAAACGGTGCG
GGTCGATCGGGCGGCGGGATCGTGTCCGTGGACATTGATGGGATTGTGTGGCAGCAGTTTTGCAATCTGTCACACGGTTG
CCAAATACATTTTTTGTTTATTATATTAAAAACTGCATCATTTCTGATAAGCCATAATGCCCAGCCTAAGGCAGCCACCT
CCATAAGAATATGTGCAGAAAATTGTTGCACAGTGTTGAAGTTGCCCTTGCACCTTAAAATAAAATATCGGATGAG----
--------------AAAATATCTCAGCTTAGATATAAGATATG-GGTACCTTAGCTTTTTTTAGGAGCAT--GGGGTACC
TTAGCTGGGTGTACACCGTTTGTCGACAGAGGCCTTGTGGGCTTACGGAATCCTAGAATTAGTTAGTCTTCAAGGGGTCA
TGTGAGGGCGCATCGTCGATTGATCCATGCACGCCACGCGCGCATAGCTTGCCACGACGATGCGATCCATTATCGACCAA
TGTGTTAACAATTCTGAATGCATGTGGAATCATGCGAGAGTAGAAAACTAGCAGCAATC-TTTTTCTTTTTCATCAAGAT
TAGCTTCCGCATACATGTGATCACAAACTCACAAATACATTTCGCGATTGCTATTGTAATCTGGAACTCGGGGGTACGTG
AGTCTTTTCGCCCCTATCACCACATTTTTTATAG--ATAAGTGATGATCCATTATGTTCACCAGCTAGCCTTGATCGGCA
TAAGCTACGTGCTTGTGCTATAAATAAACCAGTCTTGGACGTGAGGAAGGCACACTCCCACTCATAGTCACACTGCACAG
GCAGTAGAGCAAGATAGCTAGTTCAAGTGCTCAACCTCACTAAGGTAGGATAGGAATAGGATCAATGAAGCCCAGCAGGG
CAGCAATGTTGGCCATGGTAGGCCTAGTGGCCGCGGTGCTGTCCCCCGCGGCCTTGTCCACGGCGGCGCCGTCGTTGATC
TCTTTGCCCAACTCCGACAGCCCCTCCTATGACTTCCACGACGAGTCATGTCCAAACCTGTGGCAGATGGTGCACGACGC
CGTGGAGGAAGCAATCAAGGAGGATATCGGTGTTGTCGCCGGCCTCCTCCGCGTCATGTTCCACGACTGCTTCCCACAGG
TACGCAACCCTAGCTACCTCTTATTACTTGTTACTTTGTTGGCCTTGAGAGATGTTAAGTGCGCCGTAGCTTGGAGAGTG
TTGTGCGGTTAAGCTGGACAGGATGCTGGTTGTATTATCAGTTTCAAGCGATTGAATTGGGGGCGTTTTTGTCCCTAAGG
TAAAAAAAAAGAGGTTGATTTCAGGAGGATCCTGATTATGTCCAGACATACGATTTTGCTAATCCCAAGATAACTAGCTA
GAACTACTTTATGTCCAAGTTGATTTATATCAGTTGAGTCTGGTGAAAAGTACAAGTTTCACTTTTCAGAGTGTATTTTT
GTTGGACATTTAGAGAGTGTATTTAGTAGACATAATAAAATCTCAGTCAACTTTGATGGACGGATCCATGGATTTATGGA
TTTGTAACCACAAATACTATGTATGCAGGGCTGTGATGCGTCGCTTCTACTGTCTGACAAGTTCTGGAGCGAGCTGAACA
TGCCTCAGAACAATGGAATCAGAAGGAACGCAGTGTATCTCATTGAGAGCATTCGCGTCAAGGTTCAAGATACCTGCGGG
CCCACTGTCTCCTGCACGGACATCATGAACCTCGCCACCCGCGAGGCTGTGATGCACTTCGAGGTGCCAGGCTACGAGGT
GCCGCTTGGTCTACTGGATAGCCGCGCGCCCGCTCCCAGAGAGAACGTAGAGCAGCTGCCGGGCCCCGACTTCAACACCA
CCCAGCTCATCGAATCCTTCCAGAGTCGCGGTTTCGACATCACCGACGTCGTGGCCCTCTCCGGTGCGCACACGATCGGG
AGGTCAAGCTGCGGCAGCTTCAGGAACCGCTTTGGAGAGAACGCCGACTTTGTTCGTTGGCTCCAGGGCACCTGCGCCAG
AAACCCTAACCACCTACAGGACCTGGATGTGACCACCCCTGAGAAGTTCGACAACGTGTACTACAACAACCTGAAGGAGG
GGAAGGGGGTTCTCAACTCCGACATGGCCCTCACACGCGACGCCAGCACCAGCTGGCTGGTCGACGGCTTTGCACAGGAC
CAAGGGTGGTTCTTTTCCCAGTTCGGCACCTCCATGAGGAAGATGGCGCATTTGCCGAGTGAGTTCGGAAGGAACGGCGA
GATCCGCAAGTACAGCTGCTCCTGGGCTAACTTGCATGGCCCGAAGGGGCCTACTGCTGACCTTGCGGCATCAGCTTGAG
ATCCCATCATATGTCGTTAAGGGCCTTCCATGCGTGCATGAAATAAGATCTAGCTAGAATCTTC---------GTCTGGC
TTTTATGTCTCCATTTCAATAAATCTATGTTCACAAAGTTTCTTTGTACCTCAGGCTACATGAAACCTCTTATCCTCAAC
CCTCCAGCCTTACTTTGAGATCCGTACTCTCTAACTAATTAACAACAAGAAAATTTCTCTTTTTTGTTTCTCGAAAATGA
AACAACATATGAACTTCAAACTTTGCAGATCGAACAAACATTAGAACATCAATGCATGAAAAAACTTTCACATTTTTTTG
TCTGATATAAATATACAAAATGAGATTTTCTTTGAATAAAAATATTATTTCAAGTATTTAAAATGCATGAAAAAATCTGA
AAGTTTTTTCCTAGATTGTAGTTAGAATGTATTGTTGTTCTGCAAAATTTGAAGTTTATATGTTATGTCGTTTGAGAGAA
ACAAAAAAGACAAATGTGTCTGCACAGATCTTGATGCATAAATGGATGGCAAAGATAAGGGGTATCATGTAGCCTGAGCT
ACAGAAAACCATACTCATGTTCACAAAGTTCCTTTGTACCTCAGGCTACATGAAACCTCTTATCCTCAACCCTCCAGCCT
TGCTTTGAGATCCGTACTCTCTAACTAATTAACAACAAGAAAATTTCTCTTTTTTGTTTCTCGAAAATGAAACAACATAT
GAACTTCAAACTTTGCAGATCGAACTAAGCAACCCGTTTGCGTAATATAATAGAGAAAACTAAGCAACCCGTTTGGATCT
TTTCGTTTTGGTTGTCAAGCTTTCGATGATTCTGTTGTTCCTTTATTAGAAGATAGTGAGACCAAGCTATTCCTAGCCGC
ATTGTAAAAAATATATATCTTTGGATATACACCCTAAAACTGTAATTTCCAACTCACCAGAGATTACCGACTAGGCCAAA
AATCCACTGCCGCCACTACACATCCATGCCCTTTGCCTCAAGCCGTTG
>chr2D_261
TTATTTTTAAAACCAA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------ATCATTTCTGGTTAGCCACATTACCCAGCATAAGGCAGCCGCCT
GCACAAGAATATGTGCAGAAAATTGTTGCACGGCGTTGAAGTTGCCCTTACACCTTAAAATAAAATATCGTATGTGCAAA
TATCTGTGCTTAGAAAAATATCTGAGCTTAGATCCAATATAAGTGGTACCTTAGCCCTTTTTTTAGGGGTAAGGGGTACC
TTAGCTGGGTGTACACCGATTGTCGACAGAGGCCTCGTGGGCTTACGGAATACTAGAATTAGTTGGTCATCAAGGGG-CA
TGTGAGGGCGCATCGTCGATCGATCCGTGCACGCCGCGCGCGCATAGCTTGCCACGACGATGCGATCCATTATCGACCAA
TGTGTTAACAATTCTGAATGCATGTGGAATCATGCGAGAGTAGAAAACTGGCAGCAATTTTTTTTCCTTTTCTTCAAGAT
TAGCTTATGCATACA--TGATCACAAACTCACAAATACATTTCGCGATAGCTATTGTAATCTGGAACTCGGGGGTACGTG
AGTCTTTTCGCCCCTATCACCATATTTTTTATTGACATAAGTGATGATCCATTGTGTTCACCAGCTAGCCTTGATCGGCA
TAAGCTATGTGCTTGTGCTATAAATAAACGACTCTTGGACGTGAGGAAGGCACACTCCCACTCACAGTCACACTACACAG
GCAGTAGAGCAAGATAGCTAG--------CTCAACCTCGGTAAGGTAGGATAGGAATAGGATCAATGAAGCCCAGCAGGG
CAGCAATGTTGGCCATGGTAGGCCTGGTTGCCGCAGTGCTGTCCCGGGCGGCCTTGTCCACGGCGGCGCCATCGTTGATC
TCTATGCCCAACGCCGACGGCCTTTCCTATGACTTCCACGACGAGTCATGTCCAAACCTGCGGCAGATGGTGCACGACGC
CGTGGAGGAAGCAATCAAGGAGGATATCGGTGTTGTCGCCGGCCTCCTCCGCGTCATGTTCCATGACTGCTTCCCACAGG
TACGCAACCCTAGCTACCTTTTATTACTTGTTACCTTGTTGGCCTTGAGAGATGTTAAGTGCGCCGTAGCTTGGAGAGTG
TTGTGCGGTTAAGCTGGACAGGATGCTGGTTGTATTATCAGTTTCAAGCGATTGAATTGGGGGCCTTTTTGTCGCTAAGG
TAAAAAAA---AGGTTGATTTCAGGAGGATGCTGATTATGTCCAGACATACGATTTTGCTAAA-----------------
------------------------------CAGTTGAGTCTGGTGAAAAGTACAAGTTTCACTTTTCAGAGTGTATTTTT
GTTGCACATTTAGAGAGTGTATTTA---GACATAATAAAATCTCTGTCAACTTTGATGGACGGATCCACGGATTTATGGA
TATGTAACCACAAACACTATGCATGCAGGGCTGTGATGCGTCGCTTCTACTGTTTGACAAGTTCTGGAGCGAGCTGAACA
TGCCTCAGAACAATGGAATCAGAAGGAACGCAGTGTATCTCATTGAGAGCATTCGCATTAAGGTTCAAGACGCCTGCGGG
CCCACTGTCTCCTGCACGGACATCATGAACCTCGCCACCCGCGAGGCCGTGATGCACGTCGAGGTGCCAGGCTATGAGGT
GCCGCTCGGTCTACTGGATAGCCGCGCGCCCGCTCCCAGAGAGAACGTAGAGCAGCTGCCGGGCCCCGACTTCAACGCCA
CCCAGCTCATCGAATCCTTCCAGAGTCGCGGTTTCGACATCACCGACGTCGTGGCCCTCTCCGGTGCGCACACGATCGGG
AGGTCAAGCTGCGGCAGCTTCAAGAACCGCTTTGGAGAGAACGCCGACTTTGTTCGTTGGCTCCAAGGCACCTGCGCCAG
AAACCCTAACCATCTGCAGGACCTGGACGTGACCACCCCTGAGAAGTTCGACAACGTGTACTACAACAACCTGAAGGAGG
GGAAGGGGGTGCTCAACTCCGACATGGCCCTCACACATGACGCCAGCACCAGCTGGCTGGTCGACGGCTTTGCGCAGGAC
CAAGGGTGGTTCTTTTCCCAGTTCGGCACCTCCATGAGGAAGATGGCACATTTGCCGAGTGAGTTCGGAAACAATGGTGA
GATCCGCAAGTACAGCTGCTTCTGGGCCAACTTGCATGGCCCGAAGGGGCCTACTGCTGATCTCGCGGCATCAGCTTGAG
ATCCCATCATATGTCGTTAACGGCCTTCCATGCGTGCATGAAATAAGAGCGAGCTAGCTTAGCTAGAATTCTTGTCTGGC
TTTTATATCTCCATTTCAATAAATCTATGTT-------------------------------------------------
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>chr2A_2558
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------------------------------TCACAAAGTTTCTTTGTAGCTCAGGCTACATGGAACCTCTTATCCTCAAC
CCTCCAGTCTTGCTTTGAGATCCGTACTCTTCAACTAACTAATAACAAGAAGATTTCTCTTTTTTGTTTCTCGAAAATGA
AACAATATATGAACTTCAAACTTTGCAGACCGAACAAACATTAGAACATCAATGTATGAAAAAACTTTCAGATTTTTTGG
TCTGACATAAATATACAAAATGAGATTTTCTTTGAATAAAAATATTATTTCAAGTATTTAAAATACATGAAAAAATCTGA
AAGTTTTTTCCTATATTGTAATTAGAATGTATTGTTGTTCTGCAAAATTTGAAGTTCATATGTTGTGTCGTTTGAGAGAA
ACAAAAAAGACAAATATGTTTGCACGGATCTTGATGCATAAATGGATGGCAAAGATAAGGGGTACCGTGTAGCCTGAGCT
ACAGAAAACCACACCATTTATCACAAAGTTTCTTTGTAGCTCAGGCTACATGGAACCTCTTATCCTTAACCCTCCAGCCT
T-------------------------------------------------------------------------------
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------------------------------------------------
>SNPs
S--S-SSSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S-S-----S-S-S------S----------S---
S--S---------------------------S-S---------------S--------------------S---S-----
-----------------------S---------SS--S---S-------------SS-----SSSS-SS-----------
------------------S----------------S---------------S------------S---S--------S--
--------------------S-----S--------S--------------------------------------------
-------------------------------------------------S--------S-------S-----S-------
------SS-------SS-------------------------------S-------------------------------
----------------------S---------S--------------------S--------------------------
-------S---------------------S-S--------------------------------S---------S-----
---------------------SSSSSSSS---------SS----------------------------------------
-------------------------S--S-----S----------SS-----------------------S---------
---S--------S-----S---SS------------------------------------S-------------------
---------------------------------------------------------------S----------------
-------------------S--------------S---------------------------------------------
----------------------------------------------------------------S--------S------
--------SSS-------------------S-------------------------------SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------------------
----S--------------------SSS----------------S-----------------------S-----------
-S------------S------S-------------------------------S--------------------------
--------------------------------------------------------S-S-----------SS--------
-----------------------------------------------S---------S----------------S-----
------S---------------------------------------------------------------------S---
--------------------------------------------------------------------------------
----------------------S------------------------------------------S--------------
------------S--S-----------S----------------------------------------------------
----------S-------------------------SS-----------------------------------S------
-----------------------------------------------S----------------------SS--S--S--
--------------------S------S--------------------------------S--S----------------
--------------------S---------------------------S-S------SS-SSSS----------------
------S-----------------------------------------S-------------S-----------------
-------S---S------------------SS------S---S--------S----------------------------
-----S-----------------------S------------------------S---------------S-------S-
-----S----------------------------------------------------------S---------------
-------------S------S-----------------------------------S-------S---------------
---------------S---S-----S--------------------------------------S-S-------------
-----------S--SSS-SS----------S-------S-------------S-------------S-------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_42
----------------------TGTTGGTTGAGGGATCGAGC--------------------------------------
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>reverse_1997
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----------------------------------------------------------------------------ACCA
CCCAGCTCATCGAATC----------------------------------------------------------------
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>forward_53
---------------------------------GGATCGAGCCCCACTTAGTG---------------------------
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>reverse_2103
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----------------------GGAACCGCTTTGGAGAGAAC--------------------------------------
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>forward_120
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--------------------AAGCGGAACTGCTAGATGGG----------------------------------------
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>reverse_2173
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------------CCTACAGGACCTGGATGTGAC-----------------------------------------------
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>forward_243
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---------------------------------------------------------------AATCTGTCACACGGTTG
CCA-----------------------------------------------------------------------------
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>reverse_2188
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---------------------------TGTGACCACCCCTGAGAAGT---------------------------------
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>forward_1139
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-------------------------------------------------------------------------------C
TCTTTGCCCAACTCCGACA-------------------------------------------------------------
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>reverse_2398
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-----------------------------------------------------------------------------CGA
GATCCGCAAGTACAGCT---------------------------------------------------------------
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------------------------------------------------
>forward_1434
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------------------------------------------------------AATTGGGGGCGTTTTTGTCC------
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>reverse_3439
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------------------------------------------------------------------------------AA
AATCCACTGCCGCCACTA------------------------------
