>input_sequence_51060
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-------------------------------------------ATGGCTCTCTCTCACGAGGAGGTGGAGCAGGAGGAGG
AGG---------------ACGATGATCTTGACGACGGCCCCCTAAGCCCCGAGGATGGTAACATTCGCTAATTATACTCC
CAAATGATTTTCCCTTGTTGGTTACTTATTTCTATGGATGGATGCTGTTCTAAGCTAC---ATCTGCACCTGGTTGTAAT
TTTC---ATTAGTTGATGTCTTTTTTTCCTTTGTATCATCATCAGTGCTGCGGTTTGTTGAGAGTGTTGGTTCCGTGGAG
CCTGCCAAGAGGAAACTGTTGATGAAAGACACTATGGGGGTTCCGCCCGAACCCTATGACTGGCCCAACATCTGCCCGCT
CCCGGGGTCGTCTAGAGATCGGAGGCTTGCGTGTGATCTTTACTGGCACCAGGCCTACCAGATGAATCAAGTCTCTGAGA
GTAAGCAGCTCAACTGCAAGCTCTCTCCGC--GTTACAATACAATACACATTTCTGTCTAGATTACTTTTGCTGCATCAG
TATTGTGTTAAATATGTTGCTCCCTGCCTGCCTTTGAATCAATAGCTTGCCTGCCTCCTATGCGGTATACTCGCTGTTGC
AACGAAGCTTCAACTGGGCAGCAAAGGTGTTTTCACAAGCCGCGCCCTATACTCCAACTCTTCTCTACCATGGTGCATAC
CTTTCTGGAAGATTGCACCGGACCGGTCGAGGTATACGGTTATATTGCGGTCCGTGACGACGAGGATTATCGCCGCAATT
ATCTTTTCAACCGATCCCGAGATGACCCGCTCACTATCAATTCGGTAATCGCCAAGTCTTTATTTATA----TTTAGTTG
CTTAGCAGTGTTCTAAATACAGCATATTTTGCCATGTTGGTATGCTGACTCTGCTACTCGATTAAATTTCAGGCCGGCGA
CTATCTGCGCTTGTTGAGCCCCAAAAGAGGCATCTCGATGAAATTCGATTGCCTAGTTGAAGTGGATATTAGAACAAAGG
CATCATCGGGTGATAGTAGAGGTGATAAAAATCTTGTTGACGGATGCTTCGACCTAATCGAGGGCCGGTCTAGTTTCGAC
GTCCTTTCTAGAATCAAAATGGAAGGTGAACATGGTGCTCTTGTTTTTAATTTTATCATATTTCGAGAC--------AGT
GTCGAGGCGACCATACATATGAACTTTTTGGAAGTGCCTGGAGATGGGTTTGATATAAAGATGTGTGGGTACACTGCCAT
CTGGAAGAACTTGTATGCCTTCATA----GACGATAAAGAATGCGACTGCAATAGCTTCGTGTCTTCAACTGGGAGCTTT
TCACAATATTTTGTAGCAGCTGTGCAGATGGATGACACACTGTTTATTGATTTTATGGAGGGGAGTATGCCAATTTCATT
TAAAGCGGATATTCATGGCAGTGAAGAAAAAGAATATTATTTCTGTAATAGTGCTTTGGTGTCTGTGAAAGTGTCTTGGT
CGACAGTCCTCTACTAA---------------------------------------------------------------
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>chr1A_1_TraesCS1A01G024300
GGGAAGATCCTTTTCTAGCAAATTGCAACACAGACTCAAGGCCATCACGAACATTACGGGTTATGGCACCTTCCACCCAA
CCACATTGTCCGTCGACGATCAAGCCAACAAGAAAATGTTTGTATCTATAATATAATACAAATGTTCCCGTTGATCTGGT
CACAAACGTGCGTTGCTTTGAACCAAACTCAAAACGTCGATCGGAACCAACATATTGCCAGGATCTATAATGACCAATTG
AAGCAACATAGTTTTTCTGAATTTTCTCTGGATCTGTGACATCAAAAATTACACTATCCTACATGGCATAAAAAATTTAA
TTAAGATGCAAAATTCATAATATATCTGACTTTAGTTAGGCAAAACATGCAGCAGATTCAGTTAGCACCCCCTAATAGCT
TCACAAATAGGGAGCTCCACCTAGTTTTAAATTATTATTTCTTTTCTGAAGTGAGACATCATGGAGCTACCTCGTTTGGC
TTGCATCTTTTTCAGAGCGGAGCTAAATTTTAGG-AAAAAGAGCAGTTTCAAACAGGCCCTTAGCAGGGTAGGCCGGTTC
CAAGTCGATTCAAACAAGCAGGCCCAATATCTTGTGAGGTACCTCCAACAGCAGGGTGGCCCAAAAGGGGATTCTGAAAA
AAAAAAGGTGGCCCAAAAGGAACACGGGCTTGACCTTACCCCCAACGAATTCTCCCAGGATTCCCTCAAAAAAAAAAACG
AATTCTCCCAGGAACAAAGAAAGAAAACCCTAACCCTCGCGTACGTATCGCCGCCGCCGCCGCCCCCGAATTCGCCAGCC
CCGAATCCGTCTACATGACCTAATTACTACACCCCCAAATCCAATTCGGACTCGATGCTCTTACAATTTATATTTATTCA
GCCGGCTCGATCGATCTCTTCATACAAATATTTCGTTTT--TGCAGATCCATAGATTTGCAAATCTAAGTGATTCCTCCT
GCAGAGCGCAAGTTCGATCTACGAATTCGGAGTTTCAGGACTTATGGCTCTCTCTCACGAGGAGGTGGAGCAGGAGGAGG
AGG---------------ACGATGATCTTGACGACGGCCCCCTAAGCCCCGAGGATGGTAACATTCGCTAATTATACTCC
CAAATGATTTTCCCTTGTTGGTTACTTATTTCTATGGATGGATGCTGTTCTAAGCTAC---ATCTGCACCTGGTTGTAAT
TTTC---ATTAGTTGATGTCTTTTTTTCCTTTGTATCATCATCAGTGCTGCGGTTTGTTGAGAGTGTTGGTTCCGTGGAG
CCTGCCAAGAGGAAACTGTTGATGAAAGACACTATGGGGGTTCCGCCCGAACCCTATGACTGGCCCAACATCTGCCCGCT
CCCGGGGTCGTCTAGAGATCGGAGGCTTGCGTGTGATCTTTACTGGCACCAGGCCTACCAGATGAATCAAGTCTCTGAGA
GTAAGCAGCTCAACTGCAAGCTCTCTCCGC--GTTACAATACAATACACATTTCTGTCTAGATTACTTTTGCTGCATCAG
TATTGTGTTAAATATGTTGCTCCCTGCCTGCCTTTGAATCAATAGCTTGCCTGCCTCCTATGCGGTATACTCGCTGTTGC
AACGAAGCTTCAACTGGGCAGCAAAGGTGTTTTCACAAGCCGCGCCCTATACTCCAACTCTTCTCTACCATGGTGCATAC
CTTTCTGGAAGATTGCACCGGACCGGTCGAGGTATACGGTTATATTGCGGTCCGTGACGACGAGGATTATCGCCGCAATT
ATCTTTTCAACCGATCCCGAGATGACCCGCTCACTATCAATTCGGTAATCGCCAAGTCTTTATTTATA----TTTAGTTG
CTTAGCAGTGTTCTAAATACAGCATATTTTGCCATGTTGGTATGCTGACTCTGCTACTCGATTAAATTTCAGGCCGGCGA
CTATCTGCGCTTGTTGAGCCCCAAAAGAGGCATCTCGATGAAATTCGATTGCCTAGTTGAAGTGGATATTAGAACAAAGG
CATCATCGGGTGATAGTAGAGGTGATAAAAATCTTGTTGACGGATGCTTCGACCTAATCGAGGGCCGGTCTAGTTTCGAC
GTCCTTTCTAGAATCAAAATGGAAGGTGAACATGGTGCTCTTGTTTTTAATTTTATCATATTTCGAGAC--------AGT
GTCGAGGCGACCATACATATGAACTTTTTGGAAGTGCCTGGAGATGGGTTTGATATAAAGATGTGTGGGTACACTGCCAT
CTGGAAGAACTTGTATGCCTTCATA----GACGATAAAGAATGCGACTGCAATAGCTTCGTGTCTTCAACTGGGAGCTTT
TCACAATATTTTGTAGCAGCTGTGCAGATGGATGACACACTGTTTATTGATTTTATGGAGGGGAGTATGCCAATTTCATT
TAAAGCGGATATTCATGGCAGTGAAGAAAAAGAATATTATTTCTGTAATAGTGCTTTGGTGTCTGTGAAAGTGTCTTGGT
CGACAGTCCTCTACTAAGGAATATATATGTATATATGTTGGAGGAATTA--AATAATATTTGCAGAGGAAGAGAACAAAA
CGTGTGCTTATTGGTGTACTATTTTAGCATGTCTTATGAACTAGATGTTAAATCAAGTTTTCATGGCTCAAAAATACCAG
AAGACTTGCATCATTCTAAATTTTAAATGGAATTCTTCCGAAAGCTAAATTTGCAAGTCATTTATTTCAGTTCTATGTTT
TCTTTTGGTTTTTCTTCAGCTAATTATGCAAGTAGTAACCAGTTTTGTTTCCCACTAAGAACTGGAGGCACGAAACCACT
TCTTGATATGTTTAGTCAATGAAAATTATAATGTAAGTTTTTTCTCTATCCTTCTACCCTGAAAATATTTCAAAGCTGCA
TTAAAATTTCATCCGCTAAAACCTCCACAAGACTAGTTTTCATTTTAATGTCATTGCTTGAATAGTACCATTG-AAAACA
GAGGACATCACGCTCCCATCATGTATGGTTCTTAATACGACAAAACCGGAAGTCCATGACTTCCCTCACCATGCTTGTCT
GCTGGTTCATTTGGAACGAGAGAAATGCTAGAGTTTTCAGGAAGAAAATCGACCCCGCCATTCTACCTACTTGAGCTTAT
CCAAGACGAGGCTAAACTCT---------------GGGCTAGGCACTT-AGCATCATCATGCTGCGAGAGTAATCCGCTT
GTTGTTTGTTTGTTTGTTTTCTCCTCTGGCAGGCTATGTTGTGGAGCCACTGTTATGTAGCATACACTCTTCCCTCTTAA
TTAATGAATTGAGGCAAGTCTTTTGCCTCGGTTTAAAAAAAACATTCTATTACTATCAGTATGAACCCACATTCCATCTC
ACAAGTCTTGGATATGATGCTGAGTTTTGCTAAGGTTCATGTACGGTATCCGATGAAGCTCATTTAAGTTTGAAAGTCTA
CCTCGTCAACACTTCTCTCTAATCGTAGCTATGGCCTTAGGCGCCCCCCTCCTTGCAGTAAAAGGCAGCTATTTCT
>chr1B_384
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---------------------------------------------------------------AGCACCCCGTAATAGCT
TCACAAATAGGGAGTTGTACCAAGTTTTAGATTATTGTTTCTTTTCTGAAGTGAGACATCATGGAGCTACCTCATTTGGC
TTGCATCTCTTTCAGAGCGGAGCTGGATTTTAGGAAAAAAGAGCAGTTTCAAACAGGCCCTTAGCAGGGT------GTTC
CGAGTCGATC-------------------------------CCTCCAACAGTAGGGCGGCCCAAAA-GGGATTCTCAACA
AAAAAAGGTGGCCCAAAAGGGACACGGGCTTGACCTTACCCCCAACGAATTCTC--------------------------
---TCTCCCAGGAACCAAGAAAGAAAACCCTAACCCTGGCGTACGTATCGCCGCCGCCGCCCCAA---AATTCGCCAGCC
CCGAATCCGTCTACATGACCTAATTTCTACACCCCCAAATCCAATTCGGACTCGATGCTCTAACAGTTTATTTACCG--A
GCCGGCTCGATCGATCTCTTCATACGAATATTTCGTTTTTTTGCAGATCCGTAGATTTGCAAATCTAAGTGATTCCTCCT
GCAGAGGGCAAGTTCGATCTACGAATTTGGTGTTTCAGGACTCATGGCTCTCTCTCACGAGGAGGTGGAGCAGGAGGAGG
AGGAGGAGGAGGAGGAAGACGATGATCTTGAGGACGGCCCCCTAAGCCCCGAGGATGGTAACATTCCCCAATTATACTCT
CAAATATTTTTCCCTTGTTGGTTACTTATTTCCTTGGATGGATGCGGTTCCAAGCTACTACATGTGCGACTGGTTATAAT
TTTTATTATTAGTTGATGTGTTCTTTTCCTT-GTATCGTCATCAGTGCTGCGATTTGTCGAGAGAGTTGGTTCCGTGGAA
CTTGCCAAGAGGAAATTGTTGATGAAAGACACTATGGGGGTTCCGCCCGAACCCTATGACTGGCCCAACATCTGCCCGCT
CCCCGGGTCGTCCAGAGATCGGAGGTCTGCGTGTGATCTTTACTGGCACCAGGCCTACCAGATGAATCAAGTCTCCGAGA
GTAAGCAGCTCAACTGCAAGCTCTCTCTCCGTGTTACAATACAATACACATTTCTGTCTAGATTGTTTTTGCTGCATCAT
TCTTGTGTTTAATATGTTGCTCCCTGCCTGCCTTTGAATGAATAGCTTGCCTGCCTCCTATGCGGTATACTCGCTGTTGC
AATGAAGCTTCAACTGGGCAGCAAAGGTGTTTTCACAAGCCGCGCCCTATACTCCAACTCTTTTCTACCACGGTGCATAC
CTTTCTGGAAGATTGCACCAGACCAGTCGAGGTATACGGTTATATTGCGGTCCGAGATGACGAGGATTATCGCCGCAATT
ATCTTTTCAACCGATCCCGAGATGACCCGCTCACTATCAACTCGGTAATCGTCAAGTTTTATTTATTTATTTTTTAACTG
TTTAGCTGTGTTCTAAATACAGCATATGTTGCCATGTTGGTATGCTGACTCTGCTTCTCGATTAAATTTCAGGCCGGCGA
CTATCTGCGCTTGTTGAGCCCCAAAAGAGGCATCTCGATGAAATTCGATTGCCTAGTTGAAGTGGATATTAGAACAAAGG
CATTGTCGGGTGATAGTACAGATGAT-AAAATCTTGTTGATGGATGCTTCGACCTAATCGAGGGCCGGTCTAGTTTCGAC
GTCCTTTCTAGAATCAAAATGGAAGGTGAACATGGTGCTCTTGTTTTTAATCTTATCATATTTCGAGAC--------AGT
GTCGAGGCGACCATACATATGAACTTTTTGGAAGTGCCTGGAGATGGGTTTGATATAAAGATGTGTGGGTATACTGCCAT
CTGGAAGAACTTGTATGCCTTCATA----GACGATAAAGAATGCGACTGCAATAGCTTCGTGTCTTCAACTGGGAGTTTT
TCACAATATTTTGTAGCAGCTGTGCAGATGGATGACACATTGTTTATTGATTTTATGGAGGGGAGTATGCCAATTTCATT
TAAAGCGGATATTCATGGCAGCGAAGAAAAAGAATATTATTTCTGTAATAGTGCTGTGGTGTCTGTGAAAGTGTCTTGGT
CGACAGTCCTCTACTAAGGAATATATATATATATATGTTGGAGGTTAACTCAATAGTATTTGCAGAGGAAGAGAACAAAA
TGTGTGCTTATTGGTGTACTATTTTAGCATGTCTTATGAACTAGATGTTAAATCAAGTTTTCATAGCTCAAAAATACCAG
AAGACTTGCATCATTCTAAATTTTAAATGGAATTCTTCCAAAAGCTA-ATTTGCAAGTCATTTATTTGAGTTCTACGTTT
TCTTTTGGGTTTTCTTCAACTTCTTATGCAAGTAGTAACCAGTTTTGTTTCCCACTAAGAACTGGAGGCTCGAAACCACT
TCTTGGTATGTTTAGTCAATGAAAAATATAATTCAAGTTTTTTCTCTATCCTTTTACCCTGAAAATATTTCAAAGCTGCA
TTGAAATTTCATCCGCTAAAACCTCTACAAGACTAGTTTTCATTTTAATGTCATTGCTTGAATAGTACCATTGAAAAACA
GAGGACATCACGCTC----------------TTAATACCACAAACCAGAGGACAT-------------CCATGCTTGTCT
GCTGGTTCATTTGGAATGGGAGAAATGCTAGAGTTTTCAGGAAGAAATCGACG-CCGCCATTCTACCTACTCGAGCTTAT
CCAAGACGAGGCTAATAAACTCTGGACCACCGTGGGGGCTAGGCACTTGAGCATCATCATGCTGCGAGAGTAATCCGCTT
GTTGTTTGTTTGTTTGTTTTCTCCTCAT----GCTATTCTGTGGAGACACTGTTATGTA---------------------
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>chr5A_1867
CTCAT---------------------------------------------------------------------------
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--------------------------------------------------------------TAAATTTCAGGCTAGCGA
CTATCTACGATTGTTGAGCCCCAAAAAAGGCATGCCGATGAAATTCAATTGCCTAGCTGAAGTGGATATTAGAACAAAGG
CATTGTCAGGTGATAGAGA---TGATAAAACACTTGTTGATGGATGTTTCGACCTAATCGAGGGCCGGTCTACTTTCAAC
ATGCTTTCTAGAATAAAAATGGAAGGTGAACATGGGGCCCTTGTTTTTAATCTTATCATATTGCGAGTTTGCAACAAAGT
GTAGAGGCGACCATACATATGAACTTTTTGGAAGTGTCTGGAGATGAGTTTGATATAAAGATGTG-----------CCAT
TTGGAAGAGCTTGTATGCATTCATATATAGACGATGAACAATGCGAGTGCAATAGGTTCGTCTCTTCAGCTGGGAAATAT
TCACAATATTTTGTAGCAGCTGTGCAGATGGATGACACACTGTTATTTAATTTTATGGAGTGGAGTATGCCAATTTTCAT
TCAAATCAGCACTT-----AGTGAAGAAAAGGAATATTACTTCGGTAATAGTGCTATGG---------------------
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>SNPs
SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S--------
--------------S-SS---S-------S------S------------------------------------S------
--------S---------------SS--------------------------------------------SSSSSS----
-S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S----S---------S--------S--S-
--------------------S---------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSS------------S---------------------S-----------------------S-SSSSS------------
-------------------------S-----------------------------------S---S-----S-SSSSSS-
-------------------------S------------------------S-----------------------------
------S--------------------S--S-----------S-------------------------------------
-------------------------------S----------------------------------S-S----------S
-----SS-------------------------SS-----------S----S------------S---SS------S----
---S---------------S--S--------S-----S--------------S-----S-----S--------------S
-S-------------S----------------------------------------------------------------
---S--------S------------SS------------------------------------------------S----
---------------------------SS-----------------------------------SS-------------S
-S-------S-----------------------------S----------------------------------------
--S-----------------------------------------------------------S-------S---------
-------------------S----S-----------------------------S--S----------------------
----------------------------------------S----------S-----S--SS--SS-S--------SS--
S-----S--------------------S---------------------------S------------------------
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---SS-------------S--S------------------S---------------------------------------
---------------------------------------------------S----------------------------
-----------------------------------------------------------------------S--------
----------------------------------------------------------------------------S---
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-------------------------------------------------------S------------------------
----------------------------S---------------SSSSS------S------------------------
S---------------------------------------------------------------S---------------
---------------------------------------S-------S-------------------S-------S----
--------S---------S--SS----------------------------------------------S----------
-----S-------------------S------SS-------------------S--------------------------
--S----------------------S------------------------------------------------------
---------------SSSSSSSSSSSSSSSS-------S-----S-S-SSSSSSSSSSSSSSSSSSSS------------
----------------S-S----------------------------SSSSSSS-----------------S--------
---------------SSSSS------------------------------------------------------------
--------------------------SSSSSS-----SS-------S------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_212
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--------------------------------AACGTCGATCGGAACCAACA----------------------------
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>reverse_1259
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----------------------------------------------------------TGAGAGTGTTGGTTCCGTGG--
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>forward_585
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-----CGATTCAAACAAGCAGGCCC-------------------------------------------------------
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>reverse_1560
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---------------------------------------CAATAGCTTGCCTGCCTCCT---------------------
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>forward_1469
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---------TCAACTGCAAGCTCTCTCCG---------------------------------------------------
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>reverse_3092
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---------------------------------------------------ACCCCGCCATTCTACCTACT---------
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