>input_sequence_51027
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----------ATGGAGGCCTCGGAGGCGAGCTGGCACTCGTTCGACCCGTCGGTGGCCGCGGAGGACTCCGAGGAGATGG
CGCGGCTGCTCGGGGTACAGTTCTTCGGCAACGACCAGAAGCAGCATCCGGCCGCGGCGCCGCCGTCGTCCATGTACTGG
CCTGGCCAGGAGGCTGCCGACCAGTACTACACCTCGGCGCCGTACTGCATGCAGATGCAGGATCACGCCTCGGCCGGAGC
GGGTTACTACAGCCACGGCTACTACGACGGCGATGCCACTGCCATGGCCGGTAACTTCTTCGTGGCGCCGGAGGAGCAGA
TCATGGCCGATCCGGCTGGATTCATGGTCGATCTGAACCTCCAGTTCGACGACCAGGACGACGGCGCCGGCACGTCGGCG
GCGGCGTGCAAGAGGAAGTTCGGCGACCAGAACGGCACTCAGAGCGACGCGGTCACCGCCCCGAAGAAGAAGGCGCGCTC
CACGGCACCACCGGTACGTGAAAACGTG---------------------TCCTGAGTTCCTGGCAGCTCTTGACATAATA
TGTCACGGGGTCAGGGTGCCTGACGGCGTT-GAGTGTCTGTCTGATCGATGCAGGTGCAGAGGAAGGGCAAGAGCAGCGC
GCAGCCCAAGAAGGCTTCGAAGGGCTCGTGCAGCCGAGGCGCCCAGGAAGAGAGCAATGGCGAGGCCACCAACAACGTGC
AGAGCTCCAGCAACTACCTCTCCGACGAGGAGGGCTCGCTGGAGATGACCTCCTGCAGCAACATGAGCTCGGCGTCCAAG
AAGACGTCGTCGTCGCGGGGTGA------CCACGGCGGCGGCGCCAAGGCGAGGGCCGGGCGCGGAGCGGCCACCGACCC
GCAGAGCCTCTACGCCAGGGTAAGTTAATGGGTAGAAGTGCCAACGCAGTCGGCCACAACGTCTGTGATGAAGTCTGAAT
ATTAATCTGAAATGTTTGTGTTGTCGTTAGCAGAAACGTAGAGAAAAGATCAACGAGCGGCTGAAGGTGCTGCAGAACCT
CATCCCTAACGGAACCAAGGTAAT-TATTTTTAAATTTCAATCATTCGAGCTACGACTGGAACATTTGTTATACTAATGC
AAATATCTGGGGAAATGATGATGTGGTTATAAATTTCTAATGCATGCGAGATTTGGCTTTCAGGTGGACATCAGCACGAT
GCTGGAAGAAGCAGTTCACTACATCAAGTTCATGCAGCTCCAGATCAAGGTCGGTTCTGGCGAAACTCCAACCATATATT
AACCCTTTTATTAGAAATCTATGGATGTTTTTCAGGGCTGCACTTTTATCTTCAGAAGATTAATAACTAGTAGAAACTGT
TTTGAGCAA----ATTGATCCTGACTGTTTCCTGTT-GTGCACAGCTTTTGAGCTCGGATGACATGTGGATGTTCGCGCC
GATCGCCTACAACGGCTTCAACGTCGGCCTCGACCTCAAGATCGCGCCGCCGCAGCAATGA-------------------
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>chr4A_1_TraesCS4A01G047700
AGTGTTTGGCACAACACAATGTTGTTTGTGGAGACACTGAACCAGTGGTCCAAAGTTGCTGTTCCTTTGCCATTGTGAAC
AGATAATGCATGGACAT-GAACAGAGAGA----CTACCAGACAAACCCACGAATGAGACCACACTAATCCAAAACTTTCA
CTAACCACGAACTGCCGACCAAATCATTTATTTATTCTCTCTTCCCTCCAATTTTAGCCAACAAACTAGTACTAAAAAAC
ATCAAAGAGGAAAAAAAAATGCAAGTCCCGAACCCCCTGC--AGGAGGAGGCAAAAGATCAGAATCAATGATTTGAAAGC
AGCAAAAACAGAAAATTGCCCGCGGAGATTATAATGACAGGGAACTCTTCCGCACGATCTTTGCCAACCCCTGCACAACC
ATCGATCGCCTTTCTTTCTTTAATCCCCAAGTCCCCAACTACAGTCCTACCATCCGTGTTTCTCGTTTCGCC-GAGTGCG
TCGTCATCCGGTTCAAATCGCTCGTACGAGACGTCGAGACCACCCCCGCTGCACATTACTCTACCGGCGCTCACCCTAAT
CATGATCCTGATTGTTTACTCCCACCATTATTCTTATG----ATCATCATCCCGCACTCCTCTTCTCAGTTTCTCACTCA
TCGCACCCTTTCAATGGCCTCACGGACG---------------------------------GTTTTTTCTATTCCGCGGT
TGCGCGAAATTCAGCGGTCTCCGGTAGCTGTCCGGCATCTCCAACTGGAGCGAATGCTGCGTGTGTTAAACAATGGCGGC
AAGCTGCCCTGATGTTGAAAGCGCAATGGTCAGACTTGTCCGCGCGCGGAACATTCCGTTTGTGTA-CCCCAAGATCACG
AGTAGTCCCACTCCCACATTCAGCTACTGGTATAAATGTCTGCACACGCGCATTGGCAATCTGGCATC----TACAAGAG
ATACAACATACGTACTCTGCCAGCCGTCGAACAGCGTACGTCTTCGTCTAGTCGTCCGTAGTGCCAGGAGAGAGATCGAT
CGATCGAACAATGGAGGCCTCGGAGGCGAGCTGGCACTCGTTCGACCCGTCGGTGGCCGCGGAGGACTCCGAGGAGATGG
CGCGGCTGCTCGGGGTACAGTTCTTCGGCAACGACCAGAAGCAGCATCCGGCCGCGGCGCCGCCGTCGTCCATGTACTGG
CCTGGCCAGGAGGCTGCCGACCAGTACTACACCTCGGCGCCGTACTGCATGCAGATGCAGGATCACGCCTCGGCCGGAGC
GGGTTACTACAGCCACGGCTACTACGACGGCGATGCCACTGCCATGGCCGGTAACTTCTTCGTGGCGCCGGAGGAGCAGA
TCATGGCCGATCCGGCTGGATTCATGGTCGATCTGAACCTCCAGTTCGACGACCAGGACGACGGCGCCGGCACGTCGGCG
GCGGCGTGCAAGAGGAAGTTCGGCGACCAGAACGGCACTCAGAGCGACGCGGTCACCGCCCCGAAGAAGAAGGCGCGCTC
CACGGCACCACCGGTACGTGAAAACGTG---------------------TCCTGAGTTCCTGGCAGCTCTTGACATAATA
TGTCACGGGGTCAGGGTGCCTGACGGCGTT-GAGTGTCTGTCTGATCGATGCAGGTGCAGAGGAAGGGCAAGAGCAGCGC
GCAGCCCAAGAAGGCTTCGAAGGGCTCGTGCAGCCGAGGCGCCCAGGAAGAGAGCAATGGCGAGGCCACCAACAACGTGC
AGAGCTCCAGCAACTACCTCTCCGACGAGGAGGGCTCGCTGGAGATGACCTCCTGCAGCAACATGAGCTCGGCGTCCAAG
AAGACGTCGTCGTCGCGGGGTGA------CCACGGCGGCGGCGCCAAGGCGAGGGCCGGGCGCGGAGCGGCCACCGACCC
GCAGAGCCTCTACGCCAGGGTAAGTTAATGGGTAGAAGTGCCAACGCAGTCGGCCACAACGTCTGTGATGAAGTCTGAAT
ATTAATCTGAAATGTTTGTGTTGTCGTTAGCAGAAACGTAGAGAAAAGATCAACGAGCGGCTGAAGGTGCTGCAGAACCT
CATCCCTAACGGAACCAAGGTAAT-TATTTTTAAATTTCAATCATTCGAGCTACGACTGGAACATTTGTTATACTAATGC
AAATATCTGGGGAAATGATGATGTGGTTATAAATTTCTAATGCATGCGAGATTTGGCTTTCAGGTGGACATCAGCACGAT
GCTGGAAGAAGCAGTTCACTACATCAAGTTCATGCAGCTCCAGATCAAGGTCGGTTCTGGCGAAACTCCAACCATATATT
AACCCTTTTATTAGAAATCTATGGATGTTTTTCAGGGCTGCACTTTTATCTTCAGAAGATTAATAACTAGTAGAAACTGT
TTTGAGCAA----ATTGATCCTGACTGTTTCCTGTT-GTGCACAGCTTTTGAGCTCGGATGACATGTGGATGTTCGCGCC
GATCGCCTACAACGGCTTCAACGTCGGCCTCGACCTCAAGATCGCGCCGCCGCAGCAATGATCAGCTCTGG---------
-----------------------------------------------------AGCCAACGAGGCTCGAGCAACTTTCTC
GGCAG-----------TTCATATGTGCATTCGTGCACAATGATTCTTAAGTGTTTAGATTATTCCTTCTTGAATTCATTT
CAGTCATAAATTACAGACAAACGGCATATATAATACAAATTGAACGATATTTTACCTTATT----ACGCTCATTTGTCCT
CGAGA--TGAATCCTGTTTCGACGGACGCCAGTAGTTTTCCCCTCATTTTCTCGATATTAGTTACTCCCTCCGTCCCATA
ATATAAGACTAGTGTCAAAACACGTCTTATTTTATGAGACGGAGGGAATAACAGCCAATCAATAGGTCATAGGTGTAACT
TAAGGTGTATAATTAAACATGACTAGTAAAACGCCCGTGCATTGCTACGGGCTACAATGCATGCATATAAATGAATCAAA
CAAATGAT-------------AAGGTCAAAGCTGAATTTAGTATGT--TAGATGCACGTGCAATGCCATAAAACATCGCC
CGAAAACCCTTGTCTTTGGAAGGTGTCCGTGCGCTGCCATAAAAAATCCAAGGGTCTTCAAGCTATTCTTTTCGGACGTC
GACATAATTCATCTCCATCTCTCTCATACTCTGTGAAAACAAAC--------------ATATATATAAAGACACCTTTTG
TATTATCACGGGCCAA-GAAAGATGATCCCTTCAGACTTCTCATGCCCTCTCAATAAAACAAGTTAAAATGTCCCTTCAT
GGTCCATTTCACTTCATGATCAAGCACAAATGTGCACATCCTTAATGTTTTTCAACAGTGGAAGATTATTTTTCTTT---
-AAGTTTGACAACTTTGTTTAAATGATTATCATATCCTTTACAAGAACTGGAACCGGGAAATAAG--AGGGTGGTTCCCC
TTGACCTCTCAGG-CC-TGTCAATAAAACAAAATCGACCAAGTGTT------------CATGTGA------ATCTGCTTC
TCGCCCCCGGTGCATCATCCTCGCCCTTCCAAAGCTTGCCATCAAATTCCGGCAATCATAAGTGACAACTGCCTCT
>chr4B_7
------TGGCACAACACAATGTTGTTTGTGGAGACACTGAACCAGTGGTCCAAAGTTGTTGTTCCTTTGCCACAGTGAAC
AGATAATGCATAGACATTGAACAGAGAGACTAGCTACCAGACAAACACACAAATGAAACCACACTAATCCAAAGCTTGCA
CTAATCACGAACTGCCGACCAAATTATTTATGTATTCACTCTTCCCTCCAATTTTAGCCAACAAACTAA---TAAAAAAC
ATCAAAGAAGAAAATAAAATGCAAGCCCTGAACTCCCTGCAGAGGAGGAGGCAAAAGATCAGAATCAATGATTTGAAAGC
AGCAAAAACAGAAAAATGCTCGTGG-------------AGGGAACTCTTCCGCACGATCTTTGCCAACCCCTGCACAACC
ATCGATTGCCTTTCTTTCTTTAATCCCCAAGTCCC-AACTACAGTCCTACCATCCGTGTTTCTCGTTTGGCC-GAGTGAT
GCGTCATCCGGTTCAAATCACTCATATGAG--------ACCACCCCCGCTGCACATTACTCTACTGGTGCTCACCCTAAT
CATGATCCTGATTGTTTACTCCCGCCATTATTCTTATG-ATAATCATCATCCTGCACTCCCGTTCTCAGTTTCTCACTCA
TTGCACCCTTTCAATGGTCTCACGGACGATGGATCGACGCCGTGCATATTGTATCCGCCTCGGTTTTTCTATTCCGCGGT
TGCGCGAAATTCAGCGGTCGCCGGTAGCTGTCCGGCATCTCCAACTGGAACGAATGCTGCGTGTGTTAAACAATGGCGGC
AAGCTGCCTTGATGTTGAAAGCGCAATGGTCAGACTTGTCTGCGCGCGGAACATTCCGTTTGTGAACCCCCAAGATCGCG
AGTAGC------CCCACAATCAGCTACTGGTATAAATATCTGCACACGCGTATTGGCAATTTGGCATCTACTTACAAGAG
ATACAACATACGTACTCAGCCAGCCGTCGAACAGCGTACGTCT-CGTCTAGTCGTCTAC---------------------
--ATCGAACAATGGAGTCCTCGGAGGCGAGCTGGCACTCGTTCGACCCGTCGGTGGTGGCGGAGGACTCCGAGGAGATGG
CGCGGCTGCTCGGGGTGCAGTTCTTCGGCAACGAGCAGAAGCAGCATCCCGCCGCGGCGCCGCCGTCGTCCATGTACTGG
CCTGGCCAGGAGGCTGCCGACCAGTATTACACCTCGGCGCCCTACTGCATGCAGATGCAGGAGCACGCCTCGGCCGGCGC
GGGTTACTACAGCCACGGCTACTACGACGGCGATGCCACTGCCATGGCCGGTAACTTCTTCGTGGCGCCGGAGGAGCAGA
TCATGGCCGATCCGGCTGGATTCATGGTCGATCTGAACCTCCAGTTTGACGACCAGGACGACGGCGCCGGCACGTCGGCG
GCGGCGTGCAAGAGGAAGTTCGGCGACCAGAACGGCACTCAGAGCGACACGGTCGCCGTCCCGAAGAAGAAGGCGCGCTC
CACGGTACCACCGGTACGTGAAAACATG---------------------TCCTG--------GCAGCTCTTGACATAATA
TGTCACAGGATCAGGGGGCCTGACGACG-T-GAGTGTCTGTCTGATCGATGCAGGTGCAGAGGAAGGGCAAGAGCAGCGC
GCAACCCAAGAAGGCTTCGAAGGGCTCGTGCAGCCGAGGCGGCCAGGAAGAGAGCAATGGAGAGGCCAACAACAACGTGC
AGAGCTCCAGCAACTACCTCTCCGACGAGGAGGGCTCGCTGGAGATGACCTCCTGCAGCAACATGAGCTCGGCGTCCAAG
AAGACGTCGTCGTCGCGAGGTGACCACGGCCACGGCGGCGGCGCCAAGGCGAGGGCCGGGCGCGGAGCGGCCACCGACCC
GCAGAGCCTCTACGCCAGGGTAAGTCGATCAGTAGATGCGCCAACGCAGTCGGGCACAACGTC-GTGATGAAGCCTGAAT
ATTAATCTGAAATGTTTGTGTTGTCGTTAGCAGAAACGTAGACAAAAGATCAACGAGCGGCTGAAGGTGCTGCAGAAACT
CATCCCTAATGGAACCAAGGTAAGATATTTTTTTAAATCAATCATTCGAA-CACGACTGGAACTGTTTTTATACTGATAG
AAATATCTGGGGAAATGATGATGCGG---------------------------------TCAGGTGGACATCAGCACGAT
GCTGGAAGAGGCAGTCCACTACATCAAGTTCATGCAGCTCCAAATCAAGGTCGGTTCCTGCGAAACGCTAAC-ATATGTC
ATTGATCATCGGAAACTGACCCAG-----------------------------------------------------TGT
TTTGAACAACTATATTGGTGCTGACCATTCCCCTTCCGTGCACAGCTTTTGAGCTCGGATGACATGTGGATGTTCGCGCC
GATCGCCTACAACGGGTTCAACGTCGGCCTCGACCTCAAGATCGCGCCGCCGCAGCAATGATCAGCTCTGGCACCGGGTA
CAACGTCGGCCTCGACCTCAAGATCGCTCTGCCGCAGCAATGATCAGCTCTGGAGCCAACGAGGCTCGAGCAAAGTTCTC
GGCAGTCCGCATGCAGTTCATATGTGCATTCGTGCACAATGATTCTGAAGTGTTTAGATTCTTCCTTCTTGAATTCATTT
CAGTCATAAATTACAGGCGAACGCCATATATAATACAAATTGAATGATATCTTACCATTTCACCCACCCTAATTTGTCCT
CGAGATGTGAATCCTGTTTCGACGGACGCTGGTAGTTTCTCCGTTGTTTTCTCGAT------------------------
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>chr4D_37
------------------------------------CTGAACCAGAGGTCCAAAGTTGCTGTTCCTCTGCCACAGTGAAC
AGATAATGCATAGGCAT-GAACAGCGAGA----CTACCAAACAAACACAGGCATGAAACCACACTAATCCAAGGCTT---
--------GAACTGCCGACCTAGTTAATTCTTTATTCTCTCTTCCCTCCAATTTTAGCCAACAAACTAG---TAAAAAAC
ATCAAAGAAGAAAAAGAAATGCAAGTCCTGAACCCCCTGCAGAGGAGGAGGCAAAAGATCAGAATCAATGATTTGAAAGC
AGCAAAAACAGAAAAATGCTCGTGGACATTATAATGACAGGGAACTCTTCCGCACGATCTTTGCCAACCCCTGCACAACC
ATCGATTGCCTTTCTTTCTTTAATCCCCAAGCTCC-AACTACAGTCCTACCATCCGTGTTTCTCGTTTCGCCAGAGTGCG
TCGTCATCCGGTGAAAATCACTCGTATGAG--------ACCACCCCCG--GCTCATTACTCTACTGGTGCTCACCCTAAT
CATGATCCTGATTGTTTACTCCCGCCATTATTCTTATGCATTATGATCATCCTGCACTCCTGTTCTCAGTTTCTCACTCA
TTGCACCCTTTCAATGGTCTCACAGACGGTCGATCGCAGCCGTGCATATTGTATCCGCCTCGTTTTTTCTATTCCGCGGT
TGCGCGAAATTCAGCGGTCTCCGGTAGCTGTCCGGCATCTCCAACTGGAACGAATGCTGCGTGTGTTAAACAATGGCGGC
AAGCTGCCTTGATGTTGAAAGCGCAATGGTCAGACTTGTCCGCGCGCGGAACATTCCGTTTGTGTA-CCCCAAGATCACG
AGTAGC------CCCACATTCAGCTACTGGTATAAATATCTGCACACGCGCATTGGCAATTTGGCATC----TACAAGAG
ATACAACATACGTACTCATCCAGCCGTCGAACAGCGTACGTCT-CGTCTAGTCGTCTAC---------------------
--ATCGAACAATGGAGTCCTCGGAGGCGAGCTGGCACTCGTTCGACCCTTCGGTCGCCGCGGAGGACTCCGAGGAGATGG
CGCGGCTGCTCGGGGTGCAGTTCTTCGGCAACGAGCAGAAGCAGCATCCGGCCGCGGCGCCGCCGTCGTCCATGTACTGG
CCTGGCCAGGAGGCTGCCGACCAGTACTACACCTCGGCGCCGTACTGCATGCAGATGCAGGAGCACGCCTCGGCCGGCGC
AGGTTACTACAGCCACGGCTACTACGACGGCGATGCCACTGCCATGGCCGGTAACTTCTTCGTGGCGCCGGAGGAGCAGA
TCATGGCGGATCCGGCTGGATTCATGGTCGATCTGAACCTCCAGTTCGACGACCAGGACGACGGCGCCGACACGTCGGCG
GCCGCGTGCAAGAGGAAGTTCGGCGACCAGAACGGCACACAGAGCGACACGGTCGCCGCCCCGAAGAAGAAGGCGCGCTC
CACGGCACCACCGGTACGTCAAACATTCTGTGACGTGATCCTCCTGAGTTCCTG--------GAAGCTCTTGAC---ATA
TGTCACAGGATCAGGGTGCCTGACGGCG-TTGAGTGTCTGTCTGATCGATGCAGGTGCAGAGGAAGGGCAAGAGCGGCGC
GCAGCCCAAGAAGGCTTCGAAGGGCTCGTGCAGCCGAGGCGCCCAGGAAGAGAACAATGGCGAGGCCAACAACAACGTGC
AGAGCTCCAGCAACTACCTCTCCGACGAGGAGGGCTCGCTGGAGATGACCTCCTGCAGCAACATGAGCTCGGCGTCCAAG
AAGACGTCGTCGTCGCGAGGTGACCACGGCCTCGGCGGCGGCGCCAAGGCGAGGGCCGGGCGCGGAGCGGCCACCGACCC
GCAGAGCCTCTACGCCAGGGTGAGTTAATCAGTAGATGCGCCAACGCAGTCGGTCACACCGTC-GTGATGAAGTCTGAAT
ATTAATCTGAAATGTTTGTGTTGTCGTTAGCAGAAACGTAGAGAAAAGATCAACGAGCGGCTGAAGGTGCTGCAGAACCT
CATCCCTAATGGAACCAAGGTAAGAT-TTTTAAAATCTTAATCATTTGAACCACGACTGGAACAGTTTTTATACTGATAG
AAATATCTGGGGAAATGATGATGCGGGTTG-------TAATGCATGCGAGATTTGGCTTTCAGGTGGACATCAGCACGAT
GCTGGAAGAAGCAGTCCACTACATCAAGTTCATGCAGCTCCAGATCAAGGTCGGTTCCTGCGAAACGCTAACCATATGTC
ATTGATCATCGGAAACCGACCCAG-----------------------------------------------------TGC
TTTGAACAACTATATTGATCCTGACCGTTTCCCGTTTGTGAGCAGCTTTTGAGCTCGGATGACATGTGGATGTTCGCGCC
GATCGCCTACAACGGGTTCAACGTCGGCCTCGACCTCAAGATCGCTCCGCCGCAGCAATGATCAGCTCTGGCAACGGGTA
CAGCGTCGGCCTCGACCTCAAGATCGCTCTGCCGCAGCAATGATCAGCTCTGGAGCCAACGAGGCTCGAGCAAATTTCTC
GGCAGTCCGCATGCAGTTCATATGTGCATTCGTGCACAATGATTCTCAAGTGTTTAGATTGTTCCTTCTTGAATTCATTT
CAGTCATAAATTACAGGCGAACGCCATATATAATACAAATTGAACGATATCTTACCATTT----CACCCTAATTTGTCCT
CGAGA--TGAATCATGTTTCAACGGACGTCAATAGCCTCTCCCTCGTTTTCTCGATATTATTTACTCCCTCCGT------
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>chr4B_2809
ATTAA---------------------------------------------------------------------------
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-----------------CAAAACTAGTAGGACGCTTGTGCATTGCTACGAGCTACAATGCATGCATATAAATGAATCAAA
CAAATAAT-------------AAGGACAAAGCTGAATTTAGTATTT--TAGGTGCACGTGCAATGCCATAAGGCATCGCC
CGAAGACTCTTGTCTTTGGAAGGTGCCCGTGCGCTGCCATAAAAAATCCAAGGGTCTTCAAACTATTCTTTTTGGACGTC
AACATAATTCATCTCCATCTCTCTCATACTCTGTGAAAACAAACACACACACACATATATATATATAAAGACAACTTTTG
TATTATCACGGGCCAA-GGAAGATGATCCCTCCAGACCTCCCATGCCCTCTCAATAAAACAAGTTCAAATGTCCCTTTGT
GGTCCATTTCACTTCATGATCAAGCACAAATGTGCAAATCCTTAATGTTTTTTAGCAGTTGAAGATTCTTTTTCTTT---
-AAGTTTGACAACTTTGTTTAAATGATTATCATGTCCTTTACATGATTG-GAATCGGGAAATAAGGGGGGGTGGTTCCCC
TAGACCTCTCAGG-CCCTCTCAATAAAACAAAATCGACCAAAT--TCAAGAGAATATAC------------ATTTGCTTC
TTGCCCCCAGTGCATCATCCTCGCCCTTCTAAAGTTTGCCATCAAATTCCAACAATCATAAGTGATAACTGCCCCT
>chr7A_2819
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---------------------ACTAGTAAAACGCCCATACGTTGCTACGGGCTACAATGCATGCATATAAATGAATCAAA
CAAATGAT-------------AAGATCAAAGCTGGATTTAGTATGT--TAGGTGCACGTGCAATGCCATAAAAGATCGCC
CGAAGACCCTTGTCTTTGGAAGGTGTCCGTGCGCTGCCATAAAAAATCCAAGGGTCTTCAAGCTATTCTTTTTGGACGTC
GACATAATTCATCTCCATCTCTCTCATACTCTGTGAAAACAAAC--------------ATATATATAAAGACACCTTTTG
TATTATCACGGGCCAA-GAAAGATGATCCCTTCAGACTTCTCATGCCCTCTCAATAAAACAAGTTAAAATGTCCCTTCAT
GGTCCATTTCACTTCATGATCAAGCACAAATGTGCACATCCTTAATGTTTTTCAACAGTGGAAGATTATTTTTCTTT---
-AAGTTTGACAACTTTGTTTAAATGATTATCATATCCTTTACAAGAACTGGAACCGGGAAATAAG--AGGGTGGTTCCCC
TTGACCTCTCAGG-CC-TGTCAATAAAACAAAATCGACCAAGTGTT------------CATGTGA------ATCTGCTTC
TCGCCCCCGGTGCATCATCCTCGCCCTTCCAAAGCTTGCCATCAAATTCCGGCAATCATAAGTGACAACTGCCTCT
>chr5D_2819
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---------------------ACTAGTAAAACGCCCGTGCGTTGCTACGGGCTACAATGCATGCATATAAATGAATCAAA
CAAATGAT-------------AAGGTCAAAGTTGGATTTAGTATGTTATAGGTGCACGTGCAATGCCATAAGACATCGCC
CGAAGACCCTTGTCTTTGGAAGGTGCCCGTGCGCTGCCATAAAAAATCCAAGGGTCTTCAAGCTATTCTTTTTGGACGTC
GACATAATTCATCTCCATCTCTCTCATACTCTCTGAAAACAAAC--------------ATATATATAAAGACACCTTTTG
TATTATCACGGGCCAAAGGAAGATGATCCCTTCAGACTTCTCATGCCCTCTCAATAAAACAAGTTAAAATGTCCCTTTGT
GGTCCATTTCACTTCATGATCAAGCACAAATGTGCAAATCCTTAATGTTTTTCAACATTGGAAGATTATTTTTCTTT---
-AAATTTGACAACTTTGTTTAAATGATTATTATATCCTTTACAAGAACT-GAACCGGGAAATAAG--GGGGTGGTTCCCC
TTGACCTCTCAGGCCC-TGTCAATAGAACAAAATCGACCAAGTGTT------------CATGTGA------ATCTGCTTC
TCGCCCCCGGTGCATCATCCTCGCCCTTCCAAAGCTTGCCATTAAATTCCGACTATCATAAGTGACAACTGCCCCT
>chr1D_2819
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---------------------ACTAGTAAAACGTCTGTGTGTTGCTACGGGCTACAATGCATGCATATAAATGAATCAAA
CAAATGAT-------------AAGGTCAAAGCTGGATTTAGTATGT--TAGGTGCACGTGCAATGCCATAAGACATCGCC
CGAAGACCCTTGTCATTGGAAGGTGCCCCTGCGCTGCCATAAAAAATCCAAGGGTCTTCAAGCTATTCTTTTTGGATGTC
GACATAATTCATCTCCATCTCTCTCATACTCTGTGAAAACAAAC--------------ATATATATAAAGACACCTTTTG
TATTATCACGGGCCAA-GGAAGATGATCCCTTCAGACTTCTCATGCCCTCTCAATAAAACAAGTTAAAATGTCCCTTTGT
GGTCCATTTCACTTCATGATCAAGCACAAATGTGCAAATCCTTAATGTTTTTCAACAGTGGAAGATTATTTTTCTTT---
-AAATTTGACAACTCTGTTTAAATGATTATCATATCCTTTACAAGAACT-GAACCGGGAAATAAG--GGGGTGGTTCCCC
TTGACCTCTCAGGCCC-TGTCAATAGAACAAAATCGACCAAGTGTT------------CATGTGA------ATCTGCCTC
TCGCCCCCGGTGCATCATCCTCGCCCTTCCAAAGCTTGCCATTAAATTCCGGCAGTCATAAGTGACAACTGCC---
>chr2A_2819
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---------------------ACTAGTAAAACGTCCGTGCGTTGCTACGGGCTACAATGCATGTATATAAATGAATCAAA
TAGATGAT-------------AAGGTCAAAGCTGGATTTAGTATGT--TAGGTGCACGTGCAATGCCATAAAACATCGCC
CGAAGAACCTTGTCTTTGGAAGGTGCCCGTGTGCTGCCATAAAAAATCCAAGAGTCTTCAAGCTATTCTTTTTT-ATGTC
GACATAATTCATCTCCATCTCTCTCATACTCTGTGAAAACAAAC--------------ATATATATAAAGACACCTTTTG
TATTATCACGGGCCAA-GGAAGATGATCCCTTCAGACTTCTCATGACCTCTCAATAAAACAAGTTAAAATGTCCCTTTGT
GGTCCATTTCACTTCATGATCAAGCACAAATGTGCAAATCCTTAATGTTTTTCAGTAGTGGAAGATTATTTTTCTTT---
-AAGTTTGACAACTTTGTTTAAATGATTATCATATCCTTTACAAGAACTGGAACCAGGAAATAAG--AGGGTGGTTCCCC
TTGACCTCTCAGT-CC-TGTCAATAAAACAAAATCGACCAAGTGTT------------CATGTGA------ATCTGCTTC
TCGCCCCCGGTGCATCATCCTCGCCCTTCCAAAGCTTGCCATCAAATTCTGGCAATCATAAGTGACAACT------
>chr2D_2819
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---------------------ACTAGTAAAACGCCTATGCGTTGCTACGGGCTACAATGCATGCATATAAATGAATCAAA
CAAATGAT-------------AAGGTCAAAGCTGGATTTAGTATGT--TAGGTGCACGTGCAA------AAGACATCGCC
CGAAGACCCTTGTCTTTGGAAGGTGCCCGTGCGCTGCCATAAAAAATCCAAGGGTCTTCAAGCTATTCTTTTTGGACGTC
GACATAATTCATCTCCATCTCTCTCATACTCTATGAAAACAAAC--------------ATATATATAAAGACACCTTTTG
TATTATCACGGGCCAA-GGAAGATGATCCCTTCAGACTTCTCATGCCCTCTCAATAAAACAAGTTAAAATGTCCCTTTGT
GGTCCATTTCACTTCATGATCAAGCACAAATGTGCAAATCCTTAATGTTTTTCAACATTGGAAGATTATTTTTCTTT---
-AAATTTGACAACTTTGTTTAAATGATTATCATATCCTTTACAAGAACT-GAACCGGGAAATAAG--GGGGTGGTTCCCC
TTGACCTCTCAGGCCC-TGTCAATAGAACAAAATCGACCAAGTGTT------------CATGTGA------ATCTGCTTC
TCGCCCCCGGTGCATCATCCTCGCCCTTCCAAAGCTTGCCATTAAATTCCGACAATCATAAGTGACAACTGCCCCT
>chr2D_2819
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---------------------ACTAGTAGAATGCCCGTGCATTGCTACGGGCTACAATGCATGCATATAAATGAATCAAA
CAAATGAT-------------AAGGTTAAAGCTAAATTTAGTATAT--TTGATGCACGTGCAATGCCATAAGACATCGCC
CGAAGACCCTTGTCTTTGGAAGGTGCCCGTGCCCTGCCATAAAAAATCCAAGGGTCTTCAAACTATTCTTTTTGGACGTC
GACATAATTCATCTCCATCTCTCTCATACTCCATGAAAACAAAC--------------ATATATATAAAGACACCTTTTG
TATTATCACAGGCAAA-GGAAGATGATCCCTCCAGACTTCTCATGCCCTCTCAATAAAACAAATTAAAATGTCCCTTTGT
GGTCCATTTCACTTCATGATCAAGCACAAATGTGCAAATCCTTAATGTTTTTCAGCAGTCGAAGATTCTTTTTCTTT---
-AAGTTTGACAACTTTGTTT-AATGATTATCATATCCTATACAAGAACTGGAACCGGGAGATAAG--GGGGTGGTTCCCC
TAGCCCTCTCAGGCCC-TCTCAATAAAACAAAATTGACCAAGT--T------------C------------ATTTTCTTC
TTGCCCCCAGTGCATAATCCTCGCCCTTCCAAAGCTTGCCATCAAATTCCGGCAATCATAAGTGACAATTGCC---
>chr3D_2820
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----------------------CTAGTAAAACGCCCGTGCGTTGCTACGGGCTACAATGCATGCATATAAATGAATCAAA
CAAATGAT-------------AAGGTCAAAGTTGGATTTAGTATGT--TAGGTGCACGTGCAATGCCATAAGACATCGCC
CGAAGACCCTTGTCTTTGGAAGGTGCCCGTGCGCTGCCATAAAAAATCCAAGGGTCTTCAAGCTATTCTTTTTGGACGTC
GACATAATTCATCTCCATCTCTCTCATACTCTGTGAAAACAAAC--------------ATATATATCAAGACACCTTTTG
TATTATCACGGGCCAA-GGAAGATGATCCCTTCAGACTTCTCATGCCCTCTCAATAAAACAAGTTAAAATGTCCCTTTGT
GGTCCATTTCACTTCATGATCAAGCACAAATGTGCAAATCCTTAATGTTTTTCAACATTGGAAGATTATTTTTCTTT---
-AAATTTGACAACTTTGTTTAAATGATTATCATATCCTTTACAAGAACT-GAACCGGGAAATAAG--GGGGTGGTTCCCC
TTGACCTCTCAGGCCC-TGTCAATAGAAGAAAATCGACCAAGTGTT------------CATGTGA------ATCTGCTTC
TCGTCCCCGGTGCATCATCCTCGCCCTTCCAAAGCTTGCCATTAAATTCCGACAATCATAAGTGACAACT------
>chr1B_2848
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--------------------------------------------------GCTACAATGCGTGCATATAAATGAATCAAA
CAAATATTTAAGGATGTGTGCAAGGTCAAAGCTGAATTTAGTATGT--TAGGTGCACGTGCATTGCCATAAGACATCGCG
TGAAGGACCTTGTCTTTTGAAGTTGCCCGTGCGCTGCCATAAAAAAA-CAAGGTCCTTTAAACTATTTGTTTTGGACATC
GACATAACTCATCTCCATCTCTCTCATACTCTGT-AAAACAAAC--------------ATATATATAAATACACCTTTTG
TATTATCATGGGCCAA-GGAAGATGATCCCTCCAGACATCTCAGCCCCTCTCAATAGAACAAGTTAAAATGTCCCTTTGT
GGTCCATTTCACTTCATGATCAAGCAAAAATGTGCAAATCCTCACAGTTTTTCAGCAGTTGAAGATTCTTATTGTTTTTA
AAAGTTTGACAACTTTGTTTAAATAATTATCATATCCTTTACAAGAACTGGAACCGGGAAATAAG--GGGGTGATTCCCC
TAGACCTCTCGGGCCC-TCTCAATAAAACAAAATCAAGCAAGT--T------------CATGTGAATCTACATTTGCTTC
TCGCTCCCATTGCATAATCCTCGCCCTTCCAAAGCTTGTCATCAAATTCCGGCAATCATAAGTGACAACCGCCT--
>SNPs
-S-SSS------------------------------------------------------------------SS------
-----------S----------------------------------S---------S----------------S---S--
----S-------------------S--------------------------------------------SSS--------
--------S-------------------S---------------------------------------------------
---------------S---S--S---S-----------------------------------------------------
------S----------------------------S--------------------------------------------
-------------------S------S---SSSSSSSS--------------------------S--S------------
-----------------------S----------------------------S--------S------------------
-S---------------S--------------------------------------------------------------
-------------------------------------------------S------------------------------
--------S-----------------------------------------------------------------------
-----SSSSSSS-------------------------S----------------------S-------------------
-----------------S-------------------------S------------SSSSSSSSSSSSSSSSSSSSSSSS
SS--------------S---------------------------------------------------------------
----------------S-----------------S---------------------------------------------
--------------------------------------------------------------S--------------S--
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------------------------------------------------S-----S-------------------------
-------------------------S----------------------------SSSSSSSS------------------
------S--S------------------S---------------------------------------------------
--------------------------------------------------------------------S-----------
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-----------------S--------------------------------------------------------------
-----------------------------SS-----S-S--------------S---------S----------------
--------------------------------------------------------------------------------
---------S-------------S------------S------------S-S------------S--S-------S--SS
-----------------------S--S-SSSSSSSSS-------------------------------------------
---------------S-----------------------------------------SS-------S-S--------S-S
-SSSS-SS-SSS-S-SSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
-----S-------------------S------S-----------------------------------------------
---------------S----------------------------------------------------------------
-------------------------------------------------------------------------S------
----------------------------------------------S-------------S-------------------
----------------S-S----S--------------------------S-----S-S-S------S--S---------
--------------------------------------SS-----S--------------S-------------SSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS--SS-----------------------------------------------------------
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----S-------------------------------------------------------------------S-------
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>forward_1018
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--------------------------------------CGTCTTCGTCTAGTCGTCCG----------------------
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>reverse_2918
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-------------------------------------GACGGAGGGAATAACAGCCA-----------------------
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----------------------------------------------------------------------------
