>input_sequence_50959
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----------------------------------------------------------ATGGCTGACGCGGAGGACATTC
AGCCCCTTGTCTGCGACAATGGAACCGGAATGGTCAAGGTAATTGTGATTAGCTGATCACACTCTATAACATAA------
---------------------------------------------------TTTCTTTTGGGGGGATGTCATATTTTGAT
CCTGAAATTAATTAAGGGCTAATTGTTTTCATCTTTCATAGGCTGGCTTTGCCGGAGACGATGCTCCACGTGCTGTTTTC
CCTAGTATTGTTGGCCGTCCACGCCACACTGGTGTTATGGTAGGGATGGGGCAGAAGGATGCTTATGTTGGTGATGAGGC
CCAATCCAAGAGGGGTATCCTGACTTTGAAGTACCCCATTGAGCACGGAATCGTAAGCAACTGGGATGACATGGAGAAGA
TTTGGCATCACACCTTCTACAATGAGCTCCGTGTAGCACCTGAAGAGCACCCTGTTCTTCTTACAGAGGCTCCTCTTAAC
CCTAAGGCCAACAGGGAGAAGATGACACAGATCATGTTTGAGACATTCAGTGTTCCTGCCATGTATGTCGCTATTCAAGC
AGTCCTTTCTCTATATGCTAGTGGGCGTACCACTGGTAAGTGAACAAAGAAC----------------------------
-------------------------------------------------AACT-GTATTTATGTGCATATTCTCTTTTGC
TGCTATGTCATCTTCATCGAGTAGGAACAAACTGGATTTATGCTCT-------GTGATTGTTGATCATTGC---------
-------------------------------------------------------------------------AATTTTG
TTTTGGTCAATAGGTATTGTCTTGGATTCCGGAGATGGTGTCAGTCACACAGTCCCAATCTATGAAGGTTATGCCCTTCC
ACACGCTATCCTACGTCTTGATCTTGCTGGTAGGGATCTCACTGATTCCCTCATGAAGATCCTCACTGAGAGGGGTTACT
CTTTCACAACCACTGCCGAGCGGGAAATTGTCCGTGACATCAAGGAGAAGCTTGCATATGTTGCCCTCGACTACGAACAG
GAGCTTGAGACCGCGAAGAGTAGCTCATCAGTTGAGAAGAGCTACGAGCTGCCTGATGGGCAAGTGATCACCATAGGCGC
AGAGCGCTTCAGATGCCCAGAGGTCCTCTTCCAGCCTTCCATCATCGGCATGGAAGCTCCTGGCATCCACGAGACGACCT
ACAATTCCATCATGAAGTGCGACGTGGATATCAGGAAGGACCTGTACGGTAACATTGTCCTCAGTGGTGGGTCTACCATG
TTCCCTGGCATCGCCGACCGTATGAGCAAGGAGATCACAGCGCTTGCCCCAAGCAGCATGAAGATCAAGGTCGTCGCTCC
ACCGGAGAGGAAGTACAGTGTCTGGATTGGAGGGTCTATCCTTGCATCTCTGAGCACATTCCAGCAGGTAACGGCGAAAT
TTTGCCCCAATGGTTGTTGGTTCTTGACTCATGCTACTATTTGAAAGTTTCTAACATGTTCATTTCTTGTGCAGATGTGG
ATCTCCAGGGCAGAGTACGAAGAGTCTGGCCCAGCCATCGTCCACAGGAAGTGCTTCTAG--------------------
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>chr1D_1_TraesCS1D01G177400
GGCCGAGAATTTCGCTTGTTCGAAGTCGGTTTGCTCGTAGTTCTCACGAAATTGTCTAGACGGTTCATCTGTAACGGCTA
GTGGAAAAATCTGAGTATTTGACTATTTGTTTTGTACTTTTG-TGTTATGTTTCTGTGTGCGTGTGTATGTGGTGGTA--
------------------GTGTGTCTGTGTG--TGTGATTGGCGGATGTTATCTCGTGCCTCCACCTGAAAATAGTTTAT
GGAGTAGTAGTTCACAAAAGAAAA-CAAGCAGATCGATGGTGTCATTGTGTGACATGGCACCTTAAAG-TGGCAAAAATA
ACATGTTTTCTATCTGCAAATTCCCTAGTCATAGGAGTCTGTTTTTTTC----TTCAAAAAGAGAGAAAAAGAGCATGGA
TGT---TCACGACCATATA---TGCCTCAAGGTTCTCCTGCCTCGTCAGAAAATGACCAATGCTTTGTAGCAACCAGTCA
GACAAATCATAAATTGTGCAGTCTCTGTTGCAGTCGTTTTAGCCACCAATGCATATACCAAAATTGAT------------
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-----------------------TGAAAATACACATGTATCAGTAACATGCGTTAACCTACTAGGCTACTACTTAAGAGA
TCAAATCTGATTGGTCTGCTGGTGCTTCAGAGTTCAGACAAGCATTTT-GTTAGGAATTTGAATTTTCTTGAATGATGTA
TACTGTTGCAATCCGTGGAGTTGATATGTGTTATTCTATTATAATATTGGCGCT-------------------------T
TTCGATGTACACCTAAATACTCTTGTTTGAATAATCTCTTGTCATTTCAGTCAGTAACCTAAGTAACTGCTGTAAATGTA
TCTCAGTGA-TTTTTTTTCAATTATCAGTGAAATGTATTTTAGCTACATTAACTGGTAAATACTCAAGAGAAATATATTG
CTGTCCTTGTAACTCACGTTTGTGTTGGAAGAACATCTCTTGTTTCTTCGTATGGTCAGA-TAATCTGTATTAGTTGGCA
GTTTTTCTAGGCCCTGTTTAAATAAGCTGTTTTATTATATGCAGACCAGTTAACATAAATGGCTGACGCGGAGGACATTC
AGCCCCTTGTCTGCGACAATGGAACCGGAATGGTCAAGGTAATTGTGATTAGCTGATCACACTCTATAACATAA------
---------------------------------------------------TTTCTTTTGGGGGGATGTCATATTTTGAT
CCTGAAATTAATTAAGGGCTAATTGTTTTCATCTTTCATAGGCTGGCTTTGCCGGAGACGATGCTCCACGTGCTGTTTTC
CCTAGTATTGTTGGCCGTCCACGCCACACTGGTGTTATGGTAGGGATGGGGCAGAAGGATGCTTATGTTGGTGATGAGGC
CCAATCCAAGAGGGGTATCCTGACTTTGAAGTACCCCATTGAGCACGGAATCGTAAGCAACTGGGATGACATGGAGAAGA
TTTGGCATCACACCTTCTACAATGAGCTCCGTGTAGCACCTGAAGAGCACCCTGTTCTTCTTACAGAGGCTCCTCTTAAC
CCTAAGGCCAACAGGGAGAAGATGACACAGATCATGTTTGAGACATTCAGTGTTCCTGCCATGTATGTCGCTATTCAAGC
AGTCCTTTCTCTATATGCTAGTGGGCGTACCACTGGTAAGTGAACAAAGAAC----------------------------
-------------------------------------------------AACT-GTATTTATGTGCATATTCTCTTTTGC
TGCTATGTCATCTTCATCGAGTAGGAACAAACTGGATTTATGCTCT-------GTGATTGTTGATCATTGC---------
-------------------------------------------------------------------------AATTTTG
TTTTGGTCAATAGGTATTGTCTTGGATTCCGGAGATGGTGTCAGTCACACAGTCCCAATCTATGAAGGTTATGCCCTTCC
ACACGCTATCCTACGTCTTGATCTTGCTGGTAGGGATCTCACTGATTCCCTCATGAAGATCCTCACTGAGAGGGGTTACT
CTTTCACAACCACTGCCGAGCGGGAAATTGTCCGTGACATCAAGGAGAAGCTTGCATATGTTGCCCTCGACTACGAACAG
GAGCTTGAGACCGCGAAGAGTAGCTCATCAGTTGAGAAGAGCTACGAGCTGCCTGATGGGCAAGTGATCACCATAGGCGC
AGAGCGCTTCAGATGCCCAGAGGTCCTCTTCCAGCCTTCCATCATCGGCATGGAAGCTCCTGGCATCCACGAGACGACCT
ACAATTCCATCATGAAGTGCGACGTGGATATCAGGAAGGACCTGTACGGTAACATTGTCCTCAGTGGTGGGTCTACCATG
TTCCCTGGCATCGCCGACCGTATGAGCAAGGAGATCACAGCGCTTGCCCCAAGCAGCATGAAGATCAAGGTCGTCGCTCC
ACCGGAGAGGAAGTACAGTGTCTGGATTGGAGGGTCTATCCTTGCATCTCTGAGCACATTCCAGCAGGTAACGGCGAAAT
TTTGCCCCAATGGTTGTTGGTTCTTGACTCATGCTACTATTTGAAAGTTTCTAACATGTTCATTTCTTGTGCAGATGTGG
ATCTCCAGGGCAGAGTACGAAGAGTCTGGCCCAGCCATCGTCCACAGGAAGTGCTTCTAGACAGCTGTCTTCAGATCTAT
TCTCCATGCATACCCTTGTCTAGTAGCATTATTAGGTGGTGGTTTTGTTGGACAAATGTTGGGCCGATGGCCT--GTCTA
TGGGTGTATCTACTCTATTATGTGTGTAGTCTGATTTGATGGATTTATTATTGGATTCTACAACTTCATCGCTGTTTCAA
CTCGGGTCCGTTACTCGCTGGGCGCTGCTTCTGCCTGAGCAAACTTTGTTGTTTGATCTTTCTCTGTATGGCTTTGCTTG
GCAATGGCCAGCTTTGCGTCCCACTTCTGTCAGAGGCTTTGACCAGCTGCTGGGAGCTCGGTGTAGTTTGCTTGCGACCA
ACAATTCTCCTTTTTGTTGAGTATAATCACACTTTTTTGCTGGACGGAGGGTGAGCATATACTGTACTACTTTTCCCAAC
TGAACCGAGCACCGTATCGTCAAAGCCAAGCCAGGGAGTAGTTATTGCACCCGCGCCGCGGTACAGAAAACAGCA-GTCC
AGCAACGGCCAACTCCCGCACGGACGCTTTTCTTTTATGCAAGTTGCAACAATGTTATTCACACACATACAGGAATTCAT
ATTCGAGGAAGGAAGGGAGGTACGTAGGAATATCAGATGCTGAGCTGTAGAGGTCAAAGAGGAAATGTTCTCTCTAGTCG
CCCCCCTGCCCTCTGCTTGCCCTCGTCTTTTATCTCTTTCCCTTTCTACGAGGTTGAAAGGAAGAGATATGTGGCTAGCC
GTACATGCCTACCAAATTCAGAGATAAAGAAAATTTAGCTAGACTACCAGCTTCCGAGTTTCTTCTCCTAGACTCATAAA
AAAATTGGCAGGCTTCAAAATCTTTTCTCCTAGAATTCAACTCGCGGATAACGATTGCATGTTTCTCACTGTGTTTTCAT
CTATGTCCCTGATCATTGTTAAACTGTCTGACGAAACAAGAACACGCCTAATCAAAAGTGTTGAGTATGTGTGTTGTGCA
TATTTGTGTATTGGGCCCACCTT
>chr1B_1
GGCCGAGAATTTCGCAGGTTCGAAGTCGGTTTGCTCGTAGTCCTCACGAAATTGTCTAGACGGTTCATCTGTAACGGCTA
GTGGAAAAATCTGAGTATTT--------GTTTTGTACTTTTGTGTTCACGTTTCTGTGTGCGTGTGTATGTGGTGGTGGT
AGT--------GGTGGCGGTGTGTCTGTGTG--TGTGATTGGCGGATGTTATCTGGTGCCTCCACCTGAAAATAGTTTAT
GGAGTAGTAGTTCACAAAAG-AAA-CAAGCAGATCGATGGTGTCATTGTGTGACATGGCACCTTAAAG-TGGCAAAAATA
ACATGTTTTGTATTTG-AAATTCCCTAGTCATAGGAGTCTGTTTTTTTTTTCTTTCAAAAAGGGAGAAAAAGAGCATGAA
TGT---TGACGACCAT--A---TGCCTTAAGGTTCTCCTGCCTCGTCAGAAAATGACCAATGCTTTGTATCAACCAGTCA
GACAAATCATAAATTGTGCAGTATCTGTTGCAGTCGTTTTAGCCACCAATGCATGTACCAAAATTGAT------------
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-----------------------TGAAAATACACATGTATCAGTAACATGCGTTAACCTACTAGGCTACTACCTAAGAGA
TCAAATCTGATTGGTCTGTTGGTGCTTCAGAGTTCAGACAAGCATT-T-GTTAGGAATTTAAATTTTCTTGAATGATGTA
TACTGTTGGAAT-CGTCGAGTTGATATGTGTTATTCTATTATAATACTAGCGC-------------------------CT
TTTGATGTACAACTAAATACCCTTGTTTGAATAATCTC-TGTCATTTCAGTCAGTAACCTCAGTAACTGCTGTAAATGCA
TCTCAGTGTTTTTTTTTCCAATTATCAGTGAAATGTATTTG-GCTATATTAACTGGTTAATACTCAAGAGAAATATATTG
CTGTCCTTGTAACTCATGTTCGCGTAGGAAGAACAGCTCTTCTTTCTTTGTATCGTCAGTTTAATCTGTATTAGTTGGCA
GTTTTTCAAGGCCCTGTTTGAATAAGATGTTTTATTATATGCAGATCAGTTAACGTAAATGGCTGACGCAGAGGACATTC
AGCCCCTTGTCTGCGACAATGGAACTGGAATGGTCAAGGTAATTGTGATTACTTGGTCACATTCTATAACATAA------
---------------------------------------------------TTTCTTATTGGGGGCTGTCATATTTTGAT
CTTAAAATTAA-TAAGGGCTATTGGTTTTCATCTTTCATAGGCTGGTTTCGCCGGAGACGATGCTCCACGTGCAGTTTTC
CCTAGTATTGTTGGCCGTCCACGCCACACTGGTGTTATGGTAGGGATGGGGCAGAAGGATGCTTATGTTGGTGATGAGGC
CCAATCCAAGAGGGGTATCCTGACTTTGAAATACCCCATTGAGCACGGAATCGTAAGCAACTGGGATGACATGGAGAAGA
TTTGGCATCACACCTTCTACAATGAGCTCCGTGTAGCACCTGAAGAGCACCCTGTTCTTCTTACAGAGGCTCCTCTTAAC
CCTAAGGCCAACAGGGAGAAGATGACACAGATCATGTTTGAGACATTCAGCGTTCCTGCTATGTATGTCGCTATTCAGGC
CGTCCTTTCCCTATATGCTAGTGGGCGTACCACTGGTAAGTGAACAAAGAAC----------------------------
-------------------------------------------------AACT-GTATTTATGTGCATATTCTCTTTTGC
TGCTATGTTATGTTCATCGAGTAGGAACAAACTGGATTTATGCTCT-------GTGATTGTTGATCATTGC---------
-------------------------------------------------------------------------AATTTTG
TTCTTGTCAATAGGTATTGTCTTGGATTCTGGAGATGGTGTCAGTCACACAGTCCCAATCTATGAAGGTTATGCCCTTCC
ACATGCTATCCTACGTCTTGATCTTGCTGGTAGGGATCTCACTGATTCCCTCATGAAGATCCTCACTGAGAGGGGTTACT
CTTTCACAACCACTGCCGAGCGGGAAATTGTCCGTGACATCAAGGAGAAGCTTGCATATGTTGCCCTTGACTACGAACAG
GAGCTTGAGACTGCGAAGAGCAGCTCATCAGTTGAGAAGAGCTACGAGCTGCCTGATGGGCAAGTGATCACCATAGGCGC
AGAGCGCTTCAGATGCCCAGAGGTCCTCTTCCAGCCTTCCATCATCGGCATGGAAGCTCCTGGCATCCATGAGACGACCT
ACAATTCCATCATGAAGTGCGACGTGGATATCAGGAAGGACCTGTACGGTAACATTGTCCTCAGTGGTGGGTCTACCATG
TTCCCTGGCATCGCCGACCGTATGAGCAAGGAGATCACAGCGCTTGCCCCAAGCAGCATGAAGATCAAGGTCGTCGCTCC
ACCGGAGAGGAAGTACAGTGTCTGGATTGGAGGGTCTATCCTTGCATCTCTGAGCACATTCCAGCAGGTAACGGCGAAAT
TTTGCCTCAATGGTTATTGGTTCTTGACTCATGCTACTATTTGAAAGTTTCTGACATGTCCATTTCTTGTGCAGATGTGG
ATCTCCAGGGCAGAGTACGAAGAGTCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGACAGTTGTCGTCAGACCTAT
TCTCCATGCATACCCTTGTCTAGTAGCATTATTAGGTGGTGGTTTTGTTGGACAAATGTTAGGCCGATGGCCT--GTCTA
TGGGTGTATCTACTCTATTATGTGTGTAGTCTGATTTGATGGATTTATTATTGGATTCTGCAACTTCATCGCTATTTCTC
TA----------------------------------------------------------------TATGGCTTTGCTTG
GCAATGGCCCGTATTGCGTCCCACTTCGATC--AGGCTTTGGCCAGCTGCTGGGAGCTCGGTGTAGTTTGCTTGCAA-CA
ACGATCCTCCTTTTTGTTGAGTATAATCACACTTTTTTGCTGGACGGAAGTTGAGCATATACT-----------------
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>chr1A_1
GGCCGGGAATTTCACATGTTCGAAGTCGGTTTGCTCGTAGTTCTCGCGAAATTGTCTAGACGGTTCATCTGTAACGGCTA
GTGGAAAAATCTGAGTATTT--------GTTTTGTACTTTGC-GTTTATGTTTATGTGTGCGTGTGTATGTCGTGGTGGT
AGTGGACTAGTGGTGGTGGTGTGTGTGTGATACTGTGATTGGCGGATGTTATCTCGTTCCTCCACGTGAAAATAGTTTAT
GGAGTAGTAGTTCACAAAAG-AAAACAAGTAGTTCGATGGTGTCATTGTGTGACATGGCATCTTAAAATTGGTAAAAGTA
ACATGTTTTGCAACTG-AAATTCCCTAGTCATAGGAGTCAGTTTTTTTAA-----CAAAAAGGGAGAAAAAGAGCATGGA
TGTAGTTCACGACCATATGCCTTGCCTTAAGGTTGTCCTGCCTCGTCAGAAAATGACCAATGCTTTGTATCAACCAGTCA
GACAAATCATAAATTGTGCAGTATCTATTGCAGTCGTTTTAGCCACCAATGCATGTAACAAAATTGATTGAAAAATGGGA
TATCGCTTATCGGAAACTTATCGGTCGACCCATGATAAGGGGTAAATCGGCCAGTTTATCGGCATATCGGCCGATTTATC
GGCATATCGGCTGATTTATCGGTCAGTTTATCTTATCGGTCAGACACCGGTAAGCGATAAATCAGCCGATTTATCAGAAT
ATGGGAAGATATCTTGAACAGTATGAAAATACACATGTATCAGTAACATGCGTTAACCTACTAGGCTACTACCTAAGAGG
TCAGATCTGATTGGTCTGCTGGTGCTTCAGAGTTCAGACAAGCATT-TTGTTAGGAATTTGAATTTTCTTGAATGATGTA
TACTGTTGGAATCA-TGGAGTTGATATGTGTTATTCTAATATAATACTAGCGCAAAAAATATAATATAATACTAGCGCCT
TTTGATGTACAACTAAATACTCTTGTTTGAATAATCTCTA-TCATTTCAGTCAGTAACCTAAGTAACTGCTGTAAATGTA
TCTCGGTGTTCTTTTTTCCAATTATCAGTGAAATGTATTTG-GCTATATTAACTGGTTAATACTCAAGAGAAATATATTG
CTGTCCTTGTAACTCATGTTCGCGTAGGAAGAACAACTCTTCTTTCTTTGTATCGTCAGTTTAATCTGTATTAGTTGGCA
GTTTTTCAAGGCCCTGTTTGAATAAGCTGTTTTATTATATGCAGATCAGTTAAAGTAAATGGCTGACGCGGAGGACATTC
AGCCCCTTGTCTGCGACAATGGAACTGGAATGGTCAAGGTAATTGTGATTACTTGGTCACACTCTATAACATAA------
---------------------------------------------------TTTCTTATTAGGGGCTGTCATGTTTTGAT
CCTGAAATTAATTAAGGGCTAATTGTTTTCATCTTTCATAGGCTGGCTTTGCCGGAGACGATGCTCCACGTGCCGTTTTC
CCTAGTATTGTTGGCCGCCCACGCCACACTGGTGTTATGGTAGGGATGGGGCAGAAGGATGCTTATGTTGGTGATGAGGC
CCAATCCAAGAGGGGTATCCTGACTTTGAAGTACCCCATTGAGCACGGAATTGTAAGCAACTGGGATGACATGGAGAAGA
TTTGGCATCACACCTTCTACAATGAGCTCCGTGTAGCACCTGAAGAGCACCCTGTTCTTCTTACAGAGGCTCCTCTTAAC
CCTAAGGCCAACAGGGAGAAGATGACACAGATCATGTTTGAGACATTCAGTGTTCCTGCCATGTATGTCGCTATTCAAGC
CGTCCTTTCTCTATATGCTAGTGGGCGTACCACTGGTAAGTGAACAAAGAAC----------------------------
-------------------------------------------------AACT-GTATTTATGTGCATATTCTCTTTTCC
TGCTGTGTTATCTTCATCGAGTAGCAACTAACTGGATTTATGCTCT-------GTGATTGTTGATCATTGC---------
-------------------------------------------------------------------------AATTT-G
TTTTGGTCAATAGGTATTGTCTTGGATTCTGGAGATGGTGTCAGTCACACAGTCCCAATCTATGAGGGTTATGCCCTTCC
ACACGCTATTCTACGTCTTGATCTTGCCGGTAGGGATCTCACCGATTCCCTCATGAAGATCCTGACTGAGAGGGGTTACT
CTTTCACAACCACTGCCGAGCGGGAAATTGTGCGTGACATCAAGGAGAAGCTTGCATATGTTGCCCTCGACTACGAGCAG
GAGCTTGAGACCGCGAAGAGTAGCTCATCAGTTGAGAAGAGCTATGAGCTGCCTGATGGTCAAGTGATCACCATAGGCGC
AGAGCGCTTCAGATGCCCAGAGGTCCTCTTCCAGCCTTCCATCATCGGCATGGAAGCTCCTGGCATCCACGAGACGACCT
ACAATTCCATCATGAAGTGCGATGTGGATATCAGGAAGGACCTGTACGGTAACATTGTCCTCAGTGGTGGGTCTACCATG
TTCCCTGGCATCGCCGACCGTATGAGCAAGGAGATCACAGCGCTTGCCCCAAGCAGCATGAAGATCAAGGTCGTCGCTCC
ACCGGAGAGGAAGTACAGTGTCTGGATTGGAGGGTCTATCCTTGCATCTCTGAGCACATTCCAGCAGGTAACGGCGA-AT
TTTGCCCCAATGGTTGTT-GTTCTTGACTCGTTCTACCATTTGAAAGTTTCTGACATGTCCATTTCTTGTGCAGATGTGG
ATCTCCAGGGCAGAGTACGAAGAATCTGGCCCAGCCATCGTCCACAGGAAGTGCTTCTAGACAGTTGTCGTCAGACCTAT
TCTCAATGCATACCCTTGTCTAGTAGCATTATTAGGTGGTGGTTTTGTTGGACAAATGTTGGGCCGATGGCCCTCGTCTA
TGGGTGTATCTACTCTATTATGTGTGTAGTCTGATTTGATGGATTTATTATTGGATTCTACAACTTCATCGCTGTTTCAA
CTG------GTTACTCGCTTGCCGCTGCTTCTGCCTGGGCAAACTTTACTGTTTGATCTTTCTATGTATGGCTCTGCTTG
GCAATGACCCGTTCTGCGTCCCACATCGATC--AGGCTTTGGCCAGCTGCTGGGAGCTTGGTGTAGTTTGCTTGCGA-CA
ACGATCCTTCTTTTTGTTGAGTATAATCACACTTTTT-GCTGGAGGGAGGTTGAGCATATGCT--ACTACTTTTCCCAAC
TGAACCGAGCACCGTATCGTCAAAGCGAAGCCAGGGAGTAGTTATTGCACCCGCGCCGCGGTACAGAAGACAGCAGGTCC
AGCAACGGCCAACTCCCGCACGGACGCTTTTCTTTTATGCAGGTTGCAACAATGTTTTT---------------------
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>chr1D_999
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--------------------------------------------------------AAATGGCTGACGGTGAGGACATCC
AGCCCCTTGTCTGCGACAATGGAACCGGAATGGTCAAGGTCAGAAACTTTCCCCTAAACTGTTAC---------------
----------------ACATGTCATCTCCTGCATCTGTTAACACATGTCATTTTCTTGTGGTTTATTATCGTC-------
--------------------------------------TAGGCTGGTTTCGCTGGAGATGATGCGCCAAGGGCTGTTTTC
CCTAGCATAGTTGGTCGCCCTCGGCACACTGGTGTCATGGTAGGGATGGGGCAGAAGGATGCCTATGTCGGTGATGAGGC
GCAGTCCAAGAGAGGTATCCTCACCCTCAAGTACCCCATCGAGCACGGTATCGTGAGCAACTGGGATGACATGGAGAAAA
TCTGGCATCACACCTTCTACAATGAGCTCCGTGTGGCACCTGAGGAGCACCCTGTGTTGCTCACTGAGGCTCCTTTGAAC
CCAAAAGCCAACAGAGAGAAGATGACCCAGATTATGTTTGAGACTTTCAATGTTCCTGCCATGTACGTCGCAATTCAGGC
CGTGCTTTCCCTCTATGCAAGTGGTCGTACTACCGGTATGGACTGTTCCACC---TTTTAGTTCGGTGATGCTTTGCCTA
GTTAAACTACCTTTATG-----GTTCTGTTATGCTGCCCTCTTC---------------------AACCTTCCATTGTCT
AGCTATGATTATGC---TTAATGTGGCTTGTGTAATTTGGATGTACTGCAGTAGTGATTGCTGCTTATTTCTTACTGCCC
TATTGCATTGGGGAAAACAATTGCAACTAATATATCGAAAAG-------------------TTGTTGTGGCTGAAAATTT
TCTCTGTTTGCAGGTATCGTTCTCGACTCTGGTGATGGTGTCAGCCACACTGTGCCCATTTACGAAGGATACGCGCTTCC
TCATGCCATTCTTCGTTTGGATCTTGCTGGCCGTGATCTCACGGACTCCCTTATGAAGATCCTCACCGAGAGAGGTTACT
CCTTCACAACCTCAGCCGAGCGGGAAATTGTAAGGGACATCAAGGAGAAACTTGCGTATGTTGCCCTTGATTATGAACAG
GAGCTGGAGACTGCCAAGAACAGCTCCTCAGTTGAGAAGAGCTACGAGCTTCCTGATGGTCAGGTGATCACGATTGGCGC
AGAGAGGTTCAGGTGCCCTGAGGTCCTCTTCCAGCCATCCATGATCGGCATGGAGTCTTCTGGAATCCATGAGACAACCT
ACAACTCCATCATGAAGTGTGACGTGGATATCAGGAAGGACTTGTATGGCAACATTGTGCTCAGTGGTGGCACAACTATG
TTCCCAGGTATCGCTGACCGTATGAGCAAGGAGATCACAGCCCTTGCTCCGAGCAGCATGAAGATCAAGGTCGTCGCTCC
ACCTGAGAGGAAGTACAGTGTCTGGATCGGAGGGTCCATCTTAGCCTCACTCAGCACTTTCCAACAGGTA----------
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>chr1A_999
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--------------------------------------------------------AAATGGCTGACGGTGAGGACATCC
AGCCCCTTGTTTGCGACAATGGAACCGGAATGGTCAAGGTCAGAAACTCTCCCCTAAACTGTTACATATGTGATATGTCA
TCTCCTGCATCTTTTAACATGTCATCTCCTGCATCTGTTAACAC--GTCATTTTCTTGTGGTTTATTATCGTC-------
--------------------------------------TAGGCTGGTTTCGCTGGAGATGATGCACCAAGGGCTGTTTTC
CCTAGCATAGTTGGTCGCCCACGGCACACTGGTGTCATGGTAGGGATGGGGCAGAAGGATGCTTATGTTGGTGATGAGGC
GCAGTCCAAGAGAGGTATCCTCACACTCAAGTACCCGATTGAGCACGGTATCGTAAGCAACTGGGATGACATGGAGAAAA
TCTGGCATCACACTTTCTACAATGAGCTCCGTGTGGCACCTGAGGAGCACCCTGTGTTGCTCACTGAGGCTCCTTTGAAC
CCAAAAGCCAACAGAGAGAAGATGACCCAGATTATGTTTGAGACTTTCAATGTTCCTGCCATGTACGTCGCAATTCAGGC
CGTGCTTTCCCTCTATGCAAGTGGTCGTACTACTGGTATGGACTGTTTCCAACTTTTATAGTTCAGTGATGCTTTGCACA
GTAATT-TGCCTTTATGATTCTGTTACATTATGCTGCACCCTTCTGATTAATT-GAATTATTTTGAACCTTCAATTGTTC
AGCCATGATTATGC---TTACTGTGGCTTGCATAATTTTGATATACTGCAGTATTGATTGCTTCTTATTTCTTACTGCTC
TATTGCATTAGGGAAAACAATTGCAAGTAGTATATCGAGAAGTATAATGTAGAGGATTACTTTGTTGTGGCTGAAAATTT
TCTCTGTTTGCAGGTATCGTTCTCGACTCTGGTGATGGTGTCAGCCACACCGTGCCCATTTACGAAGGATACGCGCTTCC
TCATGCCATTCTTCGTTTGGATCTCGCTGGTCGGGATCTCACGGACTCCCTCATGAAGATCCTCACCGAGAGAGGTTACT
CCTTCACAACCTCAGCCGAGCGGGAAATTGTAAGGGACATCAAGGAGAAGCTTGCGTATGTTGCCCTTGATTATGAACAG
GAGCTGGAGACTGCCAAGAACAGCTCCTCAGTTGAGAAGAGCTACGAGCTTCCTGATGGTCAGGTCATCACGATTGGCGC
AGAGAGGTTCAGGTGCCCTGAGGTCCTCTTCCAGCCATCCATGATCGGCATGGAGTCTTCTGGAATCCATGAGACGACCT
ACAACTCCATCATGAAGTGTGACGTGGATATCAGGAAGGACCTGTACGGCAACATTGTGCTCAGTGGTGGCACAACTATG
TTCCCAGGTATCGCTGACCGTATGAGCAAGGAGATCACCGCGCTTGCTCCGAGCAGCATGAAGATCAAGGTTGTCGCCCC
ACCTGAGAGGAAGTACAGTGTCTGGATCGGAGGGTCCATCCTAGCCTCACTCAGCACTTTCCAACAGGTA----------
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>chr1B_1164
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--------------------------------------TAGGCTGGTTTCGCTGGAGATGATGCACCAAGGGCTGTTTTC
CCTAGCATAGTCGGTCGCCCACGGCACACTGGTGTCATGGTAGGGATGGGGCAGAAGGATGCCTATGTCGGTGATGAGGC
GCAGTCCAAGAGAGGTATCCTCACACTCAAGTACCCCATCGAGCACGGTATCGTGAGCAACTGGGATGACATGGAGAAAA
TCTGGCATCACACCTTCTACAATGAGCTCCGTGTGGCACCCGAGGAGCACCCTGTGTTGCTCACTGAGGCTCCTCTGAAC
CCAAAAGCCAACAGAGAGAAGATGACCCAGATTATGTTCGAGACTTTCAATGTTCCTGCCATGTACGTCGCGATTCAGGC
CGTGCTTTCCCTCTATGCAAGTGGTCGTACTACCGGTATGAACTTC-CCACA---TTTTAGTTCAGTGATGCCTTGCTCA
GTAATT-TACCTTCATGATTCTGTTGTGTTATGCTGCACTCTTCTGATTAATTAGAATTACTTTTAACCATCAATTGTTC
AGCCATGATTATACTTATTACTATGGCTTGCATAATTTTGATATACTGCAGTAGTGATTGCTGCTTATTTCT--------
------------------------------------GAGAAGTATAATGTGGAGGATTACTTTGTTGTGGCTGAAAATTT
TCTCTGTTTGCAGGTATTGTTCTCGACTCTGGTGATGGTGTCAGCCACACTGTGCCCATTTACGAAGGATACGCGCTTCC
TCATGCCATTCTTCGTTTGGATCTCGCTGGTCGGGATCTCACTGACTCCCTTATGAAGATCCTCACCGAGAGAGGTTACT
CCTTCACAACCTCAGCCGAGCGGGAAATTGTAAGGGACATCAAGGAGAAGCTTGCGTACGTAGCCCTTGATTATGAGCAG
GAGCTGGAGACTGCCAAGAACAGCTCCTCGGTTGAGAAGAGCTACGAGCTTCCTGATGGTCAGGTGATCACGATTGGCGC
AGAGAGGTTCAGGTGCCCTGAGGTCCTCTTCCAGCCATCCATGATTGGCATGGAGTCTTCTGGAATCCATGAGACGACCT
ACAACTCCATCATGAAGTGTGACGTGGATATCAGGAAGGACTTGTATGGCAACATTGTGCTCAGTGGTGGCACAACCATG
TTCCCAGGTATCGCTGACCGTATGAGCAAGGAGATCACCGCCCTTGCCCCGAGCAGCATGAAGATCAAGGTCGTCGCTCC
ACCTGAGAGGAAGTATAGTGTCTGGATCGGAGGGTCCATCCTAGCCTCACTCAGCACTTTCCAACAGGTA----------
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>chr5B_1690
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-----------AGGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCATACTGTGCCGATCTATGAGGGATATGCACTTCC
TCATGCTATTCTCCGGCTGGATCTTGCGGGCCGTGATCTGACCGACTCCCTGATGAAGATCCTCACAGAAAGGGGTTATT
CCTTCACTACAACCGCAGAGCGGGAAATCGTAAGAGATATAAAGGAGAAGCTCGCCTATGTCGCCCTTGACTATGAGCAG
GAGCTGGAGACAGCCAAGAGCAGCTCGTCCGTCGAGAAGAGCTACGAGCTGCCTGACGGGCAGGTCATCACGATCGGCGC
CGAGAGGTTCAGGTGCCCGGAGGTGCTGTTCCAGCCCTCGCTGATCGGCATGGAGGCTCCTGGGATCCACGAGACCACCT
ACAACTCCATCATGAAGTGCGACGTGGATATCAGGAAGGACCTGTACGGCAACATTGTGCTCAGTGGAGGGACGACCATG
TTCCCCGGCATCGCCGACCGGATGAGCAAGGAGATCACCGCCCTTGCACCGAGCAGCATGAAGATCAAGGTCGTGGCGCC
TCCCGAGAGGAAGTACAGTGTCTGGATCGGTGGTTCCATCCTCGCCTCCCTCAGCACATTCCAGCAGGTA----------
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>chr5B_1690
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-----------AGGTATCGTGTTGGATTCTGGTGATGGTGTCAGCCATACTGTGCCAATCTATGAAGGATATGCCCTTCC
ACATGCCATCCTTCGTCTTGACCTCGCTGGGCGCGACCTAACTGACTGTTTGATGAAGATTCTTACTGAGAGAGGTTACT
CCTTCACCACCACTGCCGAACGGGAAATTGTAAGGGACATCAAGGAGAAGCTCGCATATGTGGCTCTTGACTATGAACAA
GAGCTGGAAAATGCCAAGAGCAGCTCCTCTGTGGAGAAGAGCTATGAGCTGCCTGATGGGCAGGTGATCACCATTGGGGC
AGAGAGGTTCCGTTGCCCTGAGGTCCTTTTCCAGCCATCTTTCATTGGTATGGAAGCTGCTGGAATCCATGAGACCACCT
ACAACTCTATCATGAAGTGTGATGTGGATATCAGGAAGGATCTGTATGGTAACATTGTGCTCAGTGGTGGCTCAACTATG
TTCCCGGGTATTGCTGACCGTATGAGCAAGGAGATCACTGCCCTTGCACCAAGCAGCATGAAGATCAAGGTGGTGGCACC
GCCTGAGAGGAAGTACAGTGTCTGGATTGGAGGGTCGATTCTTGCCTCCCTTAGTACCTTCCAACAGGT-----------
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>chr5D_1690
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-----------AGGTATCGTGTTGGATTCTGGTGATGGTGTCAGCCATACTGTGCCAATCTATGAAGGATATGCCCTTCC
ACATGCCATCCTTCGTCTTGACCTCGCTGGGCGCGACCTAACTGACTGTTTGATGAAGATTCTTACGGAGAGAGGTTACT
CCTTCACCACCACCGCCGAACGGGAAATTGTAAGGGACATCAAGGAGAAGCTCGCATATGTGGCTCTTGACTATGAACAA
GAGCTGGAAAATGCCAAGAGCAGCTCCTCTGTTGAGAAGAGCTATGAGCTGCCTGATGGGCAGGTGATCACCATTGGGGC
AGAGAGGTTCCGTTGCCCTGAGGTCCTTTTCCAGCCATCTTTCATTGGTATGGAAGCTGCTGGAATCCATGAGACCACCT
ACAACTCTATCATGAAGTGTGATGTGGATATCAGGAAGGATCTGTATGGTAACATTGTGCTCAGTGGTGGCTCAACTATG
TTCCCGGGTATTGCTGACCGTATGAGCAAGGAGATCACTGCCCTTGCCCCAAGCAGCATGAAGATCAAGGTGGTGGCACC
GCCTGAGAGGAAGTACAGTGTCTGGATTGGAGGGTCGATTCTTGCCTCCCTTAGTACCTTCCAACAGGT-----------
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>chr5A_1690
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-----------AGGTATCGTGTTGGATTCTGGTGATGGTGTCAGCCATACTGTGCCAATCTATGAAGGATATGCCCTTCC
ACATGCCATCCTTCGTCTTGACCTTGCTGGGCGCGACCTAACTGACTGTTTGATGAAGATTCTTACGGAGAGAGGTTACT
CCTTCACCACCACTGCCGAACGGGAAATTGTAAGGGACATCAAGGAGAAGCTCGCATATGTGGCTCTTGACTATGAACAA
GAGCTGGAAAATGCCAAGAGCAGCTCCTCTGTGGAGAAGAGCTATGAGCTGCCTGATGGGCAGGTGATCACCATTGGGGC
AGAGAGGTTCCGTTGCCCTGAGGTCCTTTTCCAGCCATCTTTCATTGGTATGGAAGCTGCTGGAATCCATGAGACCACCT
ACAACTCTATCATGAAGTGTGATGTGGATATCAGGAAGGATCTGTATGGTAACATCGTGCTCAGTGGTGGCTCAACTATG
TTCCCGGGTATTGCTGACCGTATGAGCAAGGAGATCACTGCCCTTGCACCAAGCAGCATGAAGATCAAGGTGGTGGCACC
GCCTGAGAGGAAGTACAGTGTCTGGATTGGAGGGTCGATTCTTGCCTCCCTTAGTACCTTCCAACAGGT-----------
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-----------------------
>SNPs
---------------S----------------------------------------------------------------
--------------------SSSSSSSS---------------SS--------------------------------S--
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
---------S------S-------------------------------S-------------S-----------------
---------------------------S-----------------------------------------S----------
----------------------S-------------------------------S-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S-------
----------------------------------------------S---------------------------------
--------S-------------------------------------S-S----S--------------------------
--S--------S--------------------------------------------------------------------
--------S--------S----------------------SS----S----------S----------------------
----------------S---S-S--S---------S-----S------S----S-----S--------------------
-------S-----------S-------------------------S--------S-------------------------
---------------------------------------------------S----------------------------
---------------------------------------------------------S-------S--------------
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S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------S------S--------------------
----------------------------------------------------------------S----S-----S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--SSSSSSS----------S-S---------------S---------SS--------------S----------------
---------S-S---------------SS--SS--------S-----------------------------------S--
--S--S--------------------------------------------S------------SS---------------
--------------------------S-----------------------------------------S-----------
-----------------------------------------S--------------S--SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS
>forward_158
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----------------------------------------------------------TGCGTGTGTATGTGGTGGTA--
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>reverse_2190
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-----------------------------CGGAGATGGTGTCAGTCAC--------------------------------
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>forward_972
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------------------------------------------------------------------------TGGCGCTT
TTCGATGTACAC--------------------------------------------------------------------
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-----------------------
>reverse_3184
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------CTGTATGGCTTTGCTTG
GCA-----------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------
