>input_sequence_50955
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---ATGGACGCCGGGCTGTCAACTACCGTGCCTCTTCGTATCGTGATCTGCCCGTGGCTCGCGTTCGGCCACCTGCTCCC
GTACCTGGAGCTCGCGGAGCGCCTGGCGTCGCGCGGCCACCGCGTGACTTTCGTCTCCACGCCGCGCAACCTCGCTCGCC
TCCCGC---CGC------------CCGCGTCGCCGTGCAACGTTGACCTCGTCGCGCTGCCGCTTCCGCGCGTCGACGGC
CTCCCCGAAGGCGCCGAGTCCACCAACGACGTCCCCGACGAGAAGCGGGAGCTCCACTGGAAGGCCTTCGACGGCCTCGC
CGCGCCCTTCGCGGACTTCCTTGCCGCCGCGTGCGCGGACGCCGGCAGGAGGCCTCACTGGATCATCGCCGACTGCTTCC
ACCACTGGGCCGCCGCCGCCGCCCTCGAGCACAAGGT-------------------------------------------
-----------------------------------------------------------------------------G--
-CCATGCGCGGTGCTTCTGCCGACGGCCGCTATGCTCGCTGCCGCGCCCCGCCA---------GCAACCGCTGGAATCGG
AGCCCGTGGAGGCCGCCGCTGCCTCTGTGCTTGGACAGGCC---GCCGCGGCC-GTGCGCCTCGCCGTGCCCCGTTACGA
GCGGGACGACGTGGCACCGGCTTACGCCGACGACTGCGCGTC------GGGTATGTCCATCGCCCAGCGCTGGTTCTTGG
CGAAAGAGAGGTGCACGGTCTTGGCCATCCGGAGCTGCGTGGAGTGGGAGCCGGAGACCTTCCCGCTGGTGGAGACACTC
CTCGGCAAGCCGGTCGTGCCCCTGGGCCTCCTGCCGCCGTCGGTCGACGGAGGCAGGCGCCGCGCGGCCGGGTC---ATC
GGAGGACCACGCCACCCTGCGCTGGCTAGAAGAGCAGCCGCCCGACTCCGTCGTGTACATCGCGCTGGGGAGCGAGGTGC
CGCTGAGCGTTGAACAGGTGCACGAGCTGGCCCTGGGGCTGGAGCTCGCCGGGACACGCTTCCTCTGGGCTCTGCGCAAG
CCCGCCGGCGCCGTCCT------CGACAACGACCACACCCTTCCCCCCGGTTTCCAGGACCGCACCCGCGG-------CC
AAGGGCTGGTGACCATGGGATGGGTGCCCCAGATCAGCATCCTGGCGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGC
GGCCGGAACTCGCTCATCGAAGGGCTTCTGTTCGGGCACCCTCTCGTCATGCTGCCCATCTTCGGGGACCAGGGCCCGAA
TGCCCGTCAAATGGACGCCAAGAAGGTAGGGTTGCAGGTGGCCAGGGACGACGATGACGGGTCGTTCGACCGCCATGGCG
TTGCGGCTGCCGTCCGGACCGTCATGCTGGACGGAGAAGCCAGGAGGGGATTTGTGGCGAGTGCCCTCAAGATGCAGGCG
ATCGTAGCCGACAAGGAACGCCACGAGAGATATATCGACGAATTTGTTCAACAGCTCAGATCGTATCTGC----------
--CAACTGACGATCTCACTACTACCACCCCCAGCTCCTCCAGCTGA----------------------------------
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>chr1B_1_TraesCS1B01G116400
GACGATGGCATAGAAAATTAAGGACACTTCTAATTTGTAAAATATACATTAAGGGTCTCTCTTACTATTTCACGTTAAAA
AAAAGTCATGATAGAGAAAGCAACGGGAGAAAGAATTGGTAGTTTTTTTTTGAGCATCAGTACAGACACAAGCGCTCATA
TACACGCGCATACACTCATCCCTATGAACGCATACACACATCCTACCCCTATGAGCACATCCGAGAGACTGAGCCGGCAT
ATCATCTTGAGATTTACGAAGCCACCATAGGCGCCTCGTCGTCGACGTGAACGTCTCCTCCCACTGAAAGCGCATCGCCG
AAAATCCTGAAATAAATCCAGGAATAATGCGAGCACCAGGATTTGAACCCTGGTGGGTTGGGGATACCACTGTCCACCTA
ACCAACTCAACCACAGGTTGATTCGCAGAATTGGTAGTTGTTGATATATCGACTCATATCCATCATGTTTGACATGCACT
TCTGAATTATAAGAATGACCGATGTATACAATTTTTTTAAGTTTCGTGACAACGCACGGGCATTCAACTAGTATAGATAG
TAGGATTACCATTCACCTCCATCTTTCCTTTGAAAATCAATTTACATTCAATAGATTTCACTCCCTCTGCAGGCTCTTAC
TAAGCTTCACACTTGGTTTTCGTACATGGA-GTGTTTGTTAATCTAAAGCTCCTGACAAGAGGGGTTAGTGGCATGTTAC
CATCGTATACTCCACATGGAGCATT---TTT-------------------------------------------------
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-------------------------------------------------------------------TACAAGATGTAAC
CATCATATCTACATTATGG-CATACCCGCAAAATAAACAATATCTTTATTTCT-ACAAGTTGTTGCCGTCCTAAAAAAAT
TTTAT-AAGATGTTACCATCATGTGATATAGGAGTACTGTATTTTACAAGATGCTACCATCATATATGGTCTGGTCTCGG
GTGATAAATTAAGTTCGTTGCCATCGCGGTGTGAGCAGAGCACAGAGCACTAAGCACTGCTACCACGCTGATCATCCTTG
GCCATGGACGCCGGGCTGTCAACTACCGTGCCTCTTCGTATCGTGATCTGCCCGTGGCTCGCGTTCGGCCACCTGCTCCC
GTACCTGGAGCTCGCGGAGCGCCTGGCGTCGCGCGGCCACCGCGTGACTTTCGTCTCCACGCCGCGCAACCTCGCTCGCC
TCCCGC---CGC------------CCGCGTCGCCGTGCAACGTTGACCTCGTCGCGCTGCCGCTTCCGCGCGTCGACGGC
CTCCCCGAAGGCGCCGAGTCCACCAACGACGTCCCCGACGAGAAGCGGGAGCTCCACTGGAAGGCCTTCGACGGCCTCGC
CGCGCCCTTCGCGGACTTCCTTGCCGCCGCGTGCGCGGACGCCGGCAGGAGGCCTCACTGGATCATCGCCGACTGCTTCC
ACCACTGGGCCGCCGCCGCCGCCCTCGAGCACAAGGT-------------------------------------------
-----------------------------------------------------------------------------G--
-CCATGCGCGGTGCTTCTGCCGACGGCCGCTATGCTCGCTGCCGCGCCCCGCCA---------GCAACCGCTGGAATCGG
AGCCCGTGGAGGCCGCCGCTGCCTCTGTGCTTGGACAGGCC---GCCGCGGCC-GTGCGCCTCGCCGTGCCCCGTTACGA
GCGGGACGACGTGGCACCGGCTTACGCCGACGACTGCGCGTC------GGGTATGTCCATCGCCCAGCGCTGGTTCTTGG
CGAAAGAGAGGTGCACGGTCTTGGCCATCCGGAGCTGCGTGGAGTGGGAGCCGGAGACCTTCCCGCTGGTGGAGACACTC
CTCGGCAAGCCGGTCGTGCCCCTGGGCCTCCTGCCGCCGTCGGTCGACGGAGGCAGGCGCCGCGCGGCCGGGTC---ATC
GGAGGACCACGCCACCCTGCGCTGGCTAGAAGAGCAGCCGCCCGACTCCGTCGTGTACATCGCGCTGGGGAGCGAGGTGC
CGCTGAGCGTTGAACAGGTGCACGAGCTGGCCCTGGGGCTGGAGCTCGCCGGGACACGCTTCCTCTGGGCTCTGCGCAAG
CCCGCCGGCGCCGTCCT------CGACAACGACCACACCCTTCCCCCCGGTTTCCAGGACCGCACCCGCGG-------CC
AAGGGCTGGTGACCATGGGATGGGTGCCCCAGATCAGCATCCTGGCGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGC
GGCCGGAACTCGCTCATCGAAGGGCTTCTGTTCGGGCACCCTCTCGTCATGCTGCCCATCTTCGGGGACCAGGGCCCGAA
TGCCCGTCAAATGGACGCCAAGAAGGTAGGGTTGCAGGTGGCCAGGGACGACGATGACGGGTCGTTCGACCGCCATGGCG
TTGCGGCTGCCGTCCGGACCGTCATGCTGGACGGAGAAGCCAGGAGGGGATTTGTGGCGAGTGCCCTCAAGATGCAGGCG
ATCGTAGCCGACAAGGAACGCCACGAGAGATATATCGACGAATTTGTTCAACAGCTCAGATCGTATCTGC----------
--CAACTGACGATCTCACTACTACCACCCCCAGCTCCTCCAGCTGAGATTGAGAGAGCCTTCACGAATAAGATGGGAGTA
CGCCAG-GATCAGGTGCCTCCGAAATTGTGCCTTAATTTGACTTCCCAAAGGCTGTCCATAGCAGTACAGTCAGGGCACC
CCTCAAACTTGCTTCGCTGTCTAAAGCGGTTATGCATCATTCCATTCGGCGGTCCGATTTCACTTTTTTTCCTTAATTTG
ACTTCCCAAAGGTTGTCCATATCAGTGCAGTCAGGCATCTTCAACACGGACCTTCAAACTTGTTTGGCTTTAGAAACTTG
TTTTGTTCTCTAAAGTGGTTCTGCATCAGTCTGTTCGGCGGCCCGAATGCACTTTTTCCTCGGGTTGCGGGCATCCATAT
TGTTGGGGCACTCACGTAACACGGCTTACCAAAGCCCCTTTCGAGCGCCCGTGGACGTTCCTGCTCGAAAAGGACATCGC
CACTGCAGAGCACCAGTGTTGCAGTCATGCTGGCTCAGAGTAACGCGACCTCTCACAGCGCTCCGGCATTGAAACGGTGG
GCTACTCGAGGTGCCGCCCTCCCCATTCTCCCACTATGTAAACCGCAGGCCCGACATAACCGCATCTATCATCCTTCACT
CCCTTCCTCCTCTCTACACCATGCCCACCATGGCCTTCTCAAGCTCCAAAGCCATCTAGGACAAGCTCTCGTCCGAGCAG
AAACAGAAAATCACCGCCATTGCAGCCGGCTGGCAAGCCGACAAGCAGACGAAGGCCGACGCTGCGGACGTCTCAATGGA
GGACGCGACCGAGGACGAGCCAGCGCCACCTCTCTCACCGGTCAATGCCGGCATCACCATGGGCGATGCCCATGTTCACT
ACATGGATACGGTGCCGGAGGAGCCGGAGGCAGCATTTCGGGAGACACAGGCCGACCAGGCCTACAACCTCTGCCTCCTC
GGCGAGGACTGGCTCACGGAGGAGCTACTCAATGCTAGCACGACCATCGCGCTGGACGTGAACGTGCCCGAGTAGGAGGC
GCTGCTT
>chr1D_552
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-----------------------------------------------------------------------TATAGATAG
TA-GATTACCCTTCACCTCCATCTTTCTTTGG-AAATCAATTTACATTCAATAGATTTCACTCCCTCTGGAGGCTC-TAC
TAAGCTACACACTTGGTTTTCGTACATGGAAGTGTTTGTTAACGTAAAGGTCCTGACAAGAGGGGTTAGTGGCATGTTAC
CATTGTATACTCTACATGGAGTATTAATTTTGGACGCCGATAACGCCCACACGTGTGGCATACTAGATATCCGCTTACAC
ACCATGTGTGGCGTGAGCAGGAGGCAGCCCCCACGGGCTGTGTGTGGACGAACATTGGAATTGCCCACACGTGTGGGTGC
AGCTACTTCGTGCCACACGCGCAAAAAGTACTATCATCTTCATCTCGCGCGTGTGGCACGAAGCAAAAATGCCCACACTT
CCTGCCGCAACTACGTGAGGTACCCCGCGGGATGACGGTTTAGTTGCCATCCGGGATGGTAGATGTAGTTATCCAGGATG
GCAAATATAGTTGTAAAAGCATGACAACTCTATTTGTTTTGGTTAACTATAGTTGCCATGTCTAATTTATGGTAGTTGCC
GCGTGTAATCAAACCATAGTTGCCTTATGTGATTAACTACTTGACACATAGGGTCAAACAGTAGTTGCCATGTGTGTTTA
CCTAGTTGTCACGTGTGGTACAATCATAGTTGCCATGTATGGTTAATCGCAGTTGCCATATGTGTTTACCCTGGTTGCCA
CGTACGCGCAACTGCAGTTGCCGTCTAGCAACGAATCACAATTGCCATGTGTGTTTACCTAGTTGCCACGTGCGCGCAAC
TGCAGTTGGCATCCAACAACGTACGAGTGTCATGTGGGCGAAAAGCAGTTCGCCCACACACGCGTGGACTAGGTGGTGGC
TATGTGGGCAGAAACTAGTTCGCCCACACAGCGCAGCTGGCAAACCGCATGCTGCGGAGCATGTGGGCGAACTCTCCAAC
GCCCACACACCAGCCCCGTTCTACGTGGCACTCAAAATCCGCCTCAATGTGCCAAGATTCGTGCAAACTCGACTGAACGG
TGATCCAAGCATGTGGGCGAGTTGCAAAATTGCCACACATGTGGACGTTAGTATTTTCGTTAATTTTTACAAGATGTAAC
CATCATATCTTAATTTTTTACATACCCACAAAACAAATAATATCTTTATTTTT-ACAAGTTGTTGCCGTCCTATATTT-T
TTTAT-AAGATGTTACCATCATGTGATATA------CTGTATTTTACAAGATCCTACCATCATATATGGTCTATATGGTC
TGGTCTCG-------------------GGTGTGAGCGAAGCACGGAGCACTA-------CTACCACGCTGATCACCCTTG
GCCATGGACGTCGGGTTCTCAACTACCGGGCCGCTTTGTCTCGTGATCTGCCCGTGGCTGGCGTTCGACCACCTGCTCCC
GTACCTGGAGCTCGCGGAGCGCCTGGCGTCGCGCGGCCACCGCGTGGCTTTCGTCTCCACGTCACGCCACCTCGCTCGCC
TCCCGC---CGC------------CCGCGTCGCCGTGCAACGTTGACCTCGTCGCGCTGCCGCTGCGGCGCGTCGACGGC
CTCCCCAAGGGCGCCGACTCCACCAGCGACGTCTCCGACGAGAAGCGGGAGCTCCACTGAAAGGCCTTC-----------
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>chr1A_552
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-----------------------------------------------------------------------TATAGATAG
TAGGATTATCATCCACCTTCATCTTTCTTTTGAAAATCAATTAACATTCAATAGGTTTCACTCCCTCTTAAGGCTC-TAC
CAAGCTCCACACTTGATTTTCGTACATGGAACTGTTTGTTTATGTAAAGCTCCTGACAAGAGGGGTTAGTGGCATGTTAC
CATCGTATACTCCACATGGAGTATTAAGTTT-------------------------------------------------
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-------------------------------------------------------------------CACAAGATGTAAC
CACCATATCTTAATTTTTTACATACCAACAAAACAAATAATATCTTTATTTTTTACAAGTTGTTGCCGCCCTATATTT-T
TTTTAGAAGATGTTACCATCATTGATATATT----------TTATACAGGATCCTACCATCATCAT--------------
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----------------------------------------------------------------CTATGCCCCATTACGA
GCGGGACGACGTGGCACCGTCTTACGCCGACGACTGCGCGTC------GGGTATGTCCATCGCCCAGCGCTGGTTCTTGG
CGAAAGAGAGGTGCACGGTCCTGGCCATCCGGAGCTGCGTGGAGTGGGAGCCCGAGACCTTCCCGCTGGTGGAGGCACTC
CTCGGCAAGCCGGTCGTGCCCCTGGGCCTCCTGCCGCCGTCGGCCGACGGCGGCAGGCGCCGCGCGGCCGGATC---GTC
AGAGGACCACGTCACGCTACGCTGGCTAGAAGAGCAGCCGCCCGACTCCGTCGTGTACATCGCGCTGGGGAGCGAGGTGC
CGCTGAGCGTTGAGCAGGTGCACGAGCTGGCCCTGGGGCTGGAGCTCGCCGGGACACGCTTCCTCTGGGCTCTGCGGAAG
CCCGCCGGCGCCGTCCT------CGACAACGACGATGCCCTGCCCCCTGGTTTCCAGGACCGCACCCGCGG-------CC
ATGGGGTGGTGACCATGGGATGGGTGCCCCAGATCAGCATCCTGGCGCACGCCGCCGTGGGCGCGTTCCTGAC-------
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>chr5B_977
CTAGCCACGCTCCTGATCT-------------------------------------------------------------
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----------------------------------------------------------------------------CTTC
GCCATGGACGCCGTGTCCTCATGCTC---GCCGCTGCGCATTGTGATCGTCCCGTGGCTCGCATTCGGCCACATGCTCCC
GTACCTGGAACTCTCCGAGCGGCTCGCCGCGCGGGGCCACCGCGTGTCCTATGTCTCCACGCCGCGCAATCTCGCCCGCC
TCCCGCTCCCGCTGCGCCCCGCGGCGGCGCCGCG------CGTGGACCTCGTCGCGCTCCCTCTCCCGCGCGTCGACGAC
CTCGCCGACGGCGCCGAGTCCACCAACGACGTCCCCGACGACGACCGCGAGCTCCACTGGAAGGCCTTCGACGGCCTCGC
CGCGCCGTTCGCGGAGTTCCTGGCCGCCGCGTGCGCCGACGAGACCACGCGGCCTCACTGGATCATCGCCGACTCTTTCC
ACCACTGGGCAGCCGCCGCCGCCCTAGAGCACCAGGT-------------------------------------------
-----------------------------------------------------------------------------G--
-CCATGCGCGATGCTTCTCCCGACCGCTGCGTTGATCGCCACCGCGCCCCACCT---------GC---------------
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>chr5D_994
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----------------------------------------------------------------------------CTTC
GCCATGGACGCCGGGCCATCATCCTC---GCCGCTGCGCATCGTGATCGTCCCGTGGCTCGCGCTGGGCCACCTGCTCCC
GTGCCTGGAGCTCGCCGAGCGGCTCGCGTCCCGGGGCCACCGCGTGTCCTACGTCTCCACGCCGCGCAACCTCGCGCGCC
TCCCGC---CGC------------CGGCGCCACG------CGTGGACCTCGTGGCGCTCCCGCTGCCGCGCGTGGACGGC
CTCCCCGACGGCGCCGAGTCCACCAACGACGTCCCGGAAGGCCAGCGGGAGCTCCACTGGAGGGCCTTCGACGGCCTCGC
CGTGCCCTTCGCGGAGTTCCTGGCCGCCGCGTGCGCCGGCCAGGCCACGAGGCCGCACTGGATCATCGCCGACACTTTCC
ACCACTGGGCCGCCGCCGCCGCCCTGGAGCACCTGGT-------------------------------------------
-----------------------------------------------------------------------------G--
-CCGTGCGCGATGCTGCCCCCGACCGCTGCCTTGATCGCCACCGTGCTCAGTC---------------------------
----------------------------------ACAGCCAGCCGTCGGACAGAGCACG---CGCTCCTCCCCGTTACGA
ACAAGAGGGGAGGCAACCGATTTACTGCAACCATGGCGTGTC------TGGTATGTCCATCATGCAGCGCTTATTGTTGA
CAAAGGAGAGGTGCACGGTCGTGGCCATCCGGAGCTGCGTCGAGTGGGAGCCCGAGTCTTTCCCGCTGGCGAAGACAATT
CTCGGCAAGCCGGTCGTTCCCCTCGGCCTTCTGCCGCCGTCAGCCGATGCAGCCCGCTGTGCCGCCGCCAACGGG-----
-GCAGAGCATGCCACCGTGCGGTGGCTGGACGCGCAACCTCCCGGCTCGGTGCTGTACGTGGCGCTGGGGAGCGAGGTGC
CGCTGCGCGTGGAGCAGGTGCATGAGCTGGCCCTCGGGCTGGAGCTCGCCGGGACGCGCTTCCTCTGGGCTCTCAGAAAA
GCCAGCAGCGCCGGCGCC---GCCGTCGACACCGACATCCTCCCGCCGGGTTTCCAAGAGCGCACGCGTGG-------CC
AGGGGCTGGTGACCACGGCGTGGGTTCCCCAGATGAGCATCCTGGCGCACGCGGCCGTGGGCGGGTTCCTGACGCACTGC
GGGCGGAGCTCGCTGATCGAGGGCCTCCTGTTCGGTCACCCGCTCGTCATGCTGCCCATCTTCGGGGACCAGGGGCCGAA
CGCGCGGCAAATGGAGGCCAAGAAGGTGGGGCTGCAGGTGGCGAGGGACGAGGACGATGGGTCGTTCGACCGCCATGGCG
TCGCGGTGGCGGTCCGGGCCATCATGGCTGAGGGAGAGGCGAGGAGGGGCTTCTTAGCAGGCGCTGGGAGGATGCAGGAG
GTGGTAGCCGATACAGAGCGGCATGAGAGATACATCGACGAGTTTGTACAGCAGCTTAGATCTTACTCCGCC--------
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>chr5B_1038
TCGTCATT------------------------------------------------------------------------
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------------------------------------------------GTCCCGTGGCTGGCGTTCGGCCACATGCTCCC
GTACCTGGAGCTCGCCGAGCGGCTGGCGTCGCGGGGACACCGCGTGTCCTACGTCTCCACGCCGCGCAACCTTGCGCGCC
TCCCGC---CGCTGCGCCCGGCCGCGGCGCCGCG------CGTCGACCTCGTGGCGCTCCCGCTCCCGCGCGTCGACGGC
CTCCCCGACGGCGCCGAGTCCACCAACGACGTCCCCGACCACCAGCGGGAGCTCCACTGGAAGGCCTTCGACGGCCTCGC
CGCGCCCTTCGCGGAGTTCATGGCTGCCGCGTGCGCCGGCGAGGCCACCAGGCCTCACTGGGTCATCGCCGACTGCTTCC
ACCACTGGGTCGCCGCCGCCGCCGTCGAGCACAAGGTTTGACCCACCTGCATGCCGTGCGCGCTGC----TCGCTTTGGT
TCCATACTTCCATTGACCCATTCCGTTCATTCAATGCACATCTCAAAT-----AGCCCGATGCTCCATGGTTCACCAGGT
TCCATGCGCGATGCTTCAACCGACCGCTGCTGTGATCGCTGCCGCGTACCAGCCGCCACCGGAGCACGC-----------
-------------------------------TGGACCGGGC---GCTGCGACCCGC-------------CCCCGTTACGA
GACGGAGGAGACGGCACCCATGTACGACGACCAAGGCGCGTC------GGGTATGTCCACCGTCCAGCGTTGGTACTTGA
CGAAAAATAGGTGCGCGCTCGCGGTCATCCGGAGCTGCGTCGAGTGGGAGCCCGAGTCCTTCCCGCTGGTGCCAGAGCTC
CTCGGCATGCCGGTCGTGCCCCTCGGCCTTCTGCCGCCGTCAACCGGCGGAGGCCGCCGTGCGGACGCCACCAACGGATC
AGCAGAGCACGCCACCGTGCGTTGGCTGGACGCGCAGCGGCCCGGTTCGGTGGTGTACGTGGCGCTGGGGAGCGAAGTGC
CGCTGCCCCTGGAGCAGGTGCAGGAGCTAGCCCTCGGGCTGGAGCTCGCCGGGACACGCTTCCTCTGGGCTCTCCGGAAG
CCCAGTGGAGCCGCCGTCCTGGACGACGGCGCCGACATGCTTCCTCCGGATTTCCAAGAGCGCACTCGCGG-------CC
AGGGGCTGGTGACCACGGGGTGGGTTCCTCAGATGAGCATCCTGGCGCACGCGGCCGTGGGCGGGTTCCTGACGCACTGC
GGCCGGAACTCGCTGATCGAAGGGCTCCTGTTCGGTCACCCTCTCGTCATGCTGCCCATCTTCGGCGACCAAGGCCCGAA
TGCGCGCCAAATGGAGGCGAAGAAGGCGGGGTTGCAGGTGGCGAGGGACGAGAGCGATGGGTCGTTCGACCGCCATGGCA
TCGCGAGCGCGGTCCGGGACGTCATGGTTGACGGGGAGGCAAGGAGGAGATTCGTGGCAGGTGCAGCGAAGATGCAGGAG
GTGGTAGCTAATTCGGAACGGCAGGAGCGGTACATTGACGAATTTGTGCAACACCTTCGATC------------------
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>chr5D_1038
TCGTCATT------------------------------------------------------------------------
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------------------------------------------------GTCCCGTGGCTGGCGTTCGGCCACATGCTCCC
GTACCTGGAGCTCGCCGAGCGGCTGGCGTCGCGTGGTCACCGCGTGTCATACGTCTCCACGCCGCGCAACCTCGCGCGCC
TCCCGC---CGCTGCGCCCCGCCGCGGCGCCGCG------CGTGGACCTCGTAGCGCTCCCGCTGCCCCGCGTCGACGGC
CTCCCCGACGGCGCCGAGTCCACCAACGACGTCCCCGACGACCAGCGGGAGCTCCATTGGAAGGCCTTCGACGGCCTCGC
CGCGCCCTTCGCCGAGTTCATGGCCGCCGCGTGCGCCGAGGAGTCCGCGAGGCCGCACTGGGTCATGGCCGACTGCTTCC
ACCACTGGGTCGCCGCCGCCGCCGTCGAGCACAAGGTTTGACCCACCTGCATGATTTGCGCACTGCTCATTA--------
-------------------ATTCC----ATCGCATGCACGTCTCAAATGATCTAGCTCGTTGCTCCATCAATCAGGTG--
-CCATGCGCGATGCTTCTCCCGACCGCTGCTGTGATCGCGCTCGCGCAACCCCCGCCGACGGATGACGG-----------
-------------------------------TGTTGCGCGC---ACCGACACCCGC-------------CCTCGTTACGA
GCAGGAGGAGATGGCTCCCTTCTACGACGACCAAGGCGCATC------GGGTATGTCCCTCGCCCAGCGCTGGCAGTTGA
CGAAAAAGAGGTCCGTGCTCGGGGTCATTCGGAGCAGCGTGGAGTGGGAGCCCGAGTCCTTCCCGCTGGTGCAACCGCTG
CTCGGCATGCCAGTCGTTCCCCTCGGCCTTCTGCCGCCGTCACCCGACGGATGGCGTCGTGCCGGCGGCACCAAAGAATC
ATCAGAGCACGCGACCGTGCGCTGGCTGGACGCGCAGTCGCCCGGCTCGGTGGTGTACGTGGCGCTCGGGAGCGAAGTGC
CGCTGCCCCTGGAGCAGGTGCACGAGCTTGCCCTCGGGCTGGAGCTCGCCGGTACACGCTTCCTCTGGGCTCTCCGGAAG
CCGAGCGGCGCTGCCGTCCTGGATGACGGGGCCGACATGCTTCCACCGGGTTTCCAAGAGCGCGCTCGCGG-------CC
AGGGGCTGGTGACCACGGGCTGGGTTCCTCAGATGAGCATCCTGGCGCACGCCGCCGTCGGTGGGTTCCTGACGCACTGC
GGCCGGAACTCGCTGATCGAAGGCCTCCTGTTCGGGCACCCTCTCGTCATGCTGCCCATCTTCGGCGACCAAGGGCCCAA
CGCGCGGCAGATGGAGGCGAAGAAGGTGGGGTGTCTCGTGGCGAGGAAGGAGGACGACGGGTCGTTCGACCGCCATGGCA
TCGCGAGCGCGGTCCGGGACGTCATGGTTGACGGAGAGGCAAGGAGGAGATTCGTGGCAGGGGCAGCGAAGATGCAGGAG
GTCGTAGCTAATTCGGAACGGCAGGAGCGGTACATCGACGAATTTGTACAACACCTTAGATC------------------
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>chr5A_1048
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--------------------------------------------------CCCGTGGCTCGCCTTCGGCCACATGCTCCC
GTACCTGGAGCTCGCCGACCGGCTGGCGTCGCGTGGCCACCGCGTGTCCTACGTCTCCACGCCGCGCAACCTCGCGCGCC
TCCCGC---CGCTGCGCCCCGCCGCGGCGCCGCG------CGTGGACCTCGTCGCGCTCCCGCTGCCCCGCGTCGACGGC
CTCCCCGACGGCGCCGAATCCACCAACGACGTCCCCGACCACCAGCGGGAGCTCCACTGGAAGGCCTTCGACGGCCTCGC
CGCGCCCTTCGCGGAGTTCATGGCCGCCGCGTGCGCCGACGAGGCCACCAGGCCTCACTGGGTCATCGCCGACTGCTTCC
ACCACTGGGTCGCCGCCGCCGCCGTCCAGCACAAGGTTCGGCTCATC----TGCCGCGCGCGCTGCTCGATCGCTTTGGT
TCCATACTTCCATTGACCCATTCC----ATCCAATGCACATCTCAAAT-----AGCTCGATGCTCGATGGTTCACCAGGT
TCCATGTGCCATGCTTCAACCGACCGCTGCTGTGATCGCTGCCGCGTACCACCC---------GCACGG-----------
-------------------------------TGGACCGCGC---GCTGTGACCCGC-------------CCCCGTTACGA
GACGGAGGAGACGGCACCCATGTACGACGACCAAGGCGCGTC------GGGTATGTCCACCGTCCAGCGTTGGCACTTGA
CGAAAAACAGGTGCGCGCTCGCGGTCATCCGGAGCTGCGTCGAGTGGGAGCCCGAGTCCTTCCCGCTGGTGCCAAAGCTC
CTCGAAATGCCGGTCGTGCCACTCGGCCTTCTGCCACCGTCATCCGACGGAGGCCGCCGTGCGGACGGCACCAACGGATC
AGCAGAGCACGCCACCGTGCGCTGGCTGGACGCGCAGCCGCCCGGCTCGGTGGTGTACGTGGCGCTGGGGAGCGAAGTGC
CGCTGCCCCTGGAGCAGGTGCACGAGCTGGCCCTCGGGCTGGAGCTCGCCGGGACGCGCTTCCTCTGGGCTCTCCGGAAG
CCCAGCGGCGCCGCCGTCCTGGACGACGGCGCCGACATGCTTCCTCCAGGTTTCCAAGAGCGCGCTCGCGG-------GG
TGGGGCTGGTGACCACGGGGTGGATTCCTCAGATGAGCATCCTGGCGCACGCCGCCGTGGGCGGGTTCCTGACGCACTGC
GGCCGGAACTCGCTGATCGAAGGGCTCCTGTTCGGCCACCCTCTCGTCATGCTACCCATCTTCGGCGACCAAGGTCCGAA
TGCACGCCGAATGGAGGCGAAGAAGGCGGGGTTGCAGGTGGCGAGGGACGAGAGCGATGGGTCCTTCGACCGCCATGGCA
TCGCGAGCGCGGTCCGGGACGTCATGGTTGACGGAGAGGCAAGGATGAGATTCGTGGCAGGTGCAGCGAAGATGCAAGAG
GTCGTAGCTAATACCCAACGACAGGAGAGGTACATTGACGAATTTGTGCGACACCTTCGATC------------------
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>chr1D_1376
TGCTATCA------------------------------------------------------------------------
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-------------------------------------------------------------------------------C
ACCACTGGGCCGCCGCCGCCGCCCTCGACCACAAGGT-------------------------------------------
-----------------------------------------------------------------------------G--
-CTATGCGCGGTGCTCCTGCCGACGGCCGCTATGCTCGCTGCCGCGCCCCGCCA---------GCAACCGCTGGAGTCGG
AGCCCGTCGAGGCCGCCGCTGCCTCTGTGCTTGGACAGGCC---GCCGCGGCC-GTGCGCCTCGCCGTGCCCCGTTACGA
GAGGGACGACGTGGCACCTGCTTACGCCGACGACTGCGCGTC------GGGTATGTCCATCGCCCAGCGCTGGTTCTTGG
CGAAAGAGAGGTGCACGGTCTTGGCCATCCGGAGCTGCGTGGAGTGGGAGCCGGAGACCTTCCCGCTGGTGGAGGCACTC
CTCGGCAAGCCGGTCGTGCCCCTGGGCCTCCTGCCGCCGTCGGCCGACGGCGGAAGGCGCCGCGCGGCCGGATC---ATC
AGAGGACCACGTCACGCTACGCTGGCTAGAAGAGCAGCCGCCCGACTCCGTCGTGTACATCGCGCTGGGGAGCGAGGTGC
CGCTGAGCGTTGAACAGGTGCAGGAGCTGGCCCTGGGGCTGGAGCTCGCCGGGACACGCTTCCTCTGGGCTCTGCGGAAG
CCCGCCGGGGCCGTCGT------CGACAACGACGACGCCCTTCCCCCCGGTTTCCAGGACCGGACCCGCGGCCATGGCCC
ATGGGGTGGTGACCATGGGATGGGTGCCCCAGATCAGCATCCTGGCGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGC
GGCCGGAACTCGCTCATCGAAGGGCTTCTGTTCGGGCACCCACTCGTCATGCTGCCCATCTTCGGGGACCAGGGCCCGAA
TGCCCGCCAAATGGAGTCGAAGAAGGTAGGGTTGCAGGTGGCGAGGGACGACGACGACGGGTCGTTCGACCGCCATGGCG
TTGCGGCTGCCGTCCGGACCGTCATGCTGGACGGAGAAGCCAGGAGGGGATTTGTGGCGGGTGCCCTCAAGATGCAGGCG
ATCGTGGCCGACAAGGAACGGCATGAGAGATACATCGACGAATTTGTTCAACAACTCAGATCGTATCTTGCACCGCCGCA
TGCAACTGAAGATCTCACTACTGCCACCCCCAGCTCC---AGCTGAGACTGAGATAGCATTCACGAATAAGATGTGAGTA
CGCCTACGATCAGGTGCCTGAGAATTTGTGC-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr5A_1506
--------------------------------------------------------------------------------
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---------------CCGATGCCTCTGTGGTTGAACAGCCAGGAGCCGCGGCC-GCGCG---CGCTGTGCCCCGTTACGA
ACGGGAGGGGCATGCAGCGTTTACCACTGGCCATGGCGCGTCGTCGGGTGGTATGTCCGTCGTCCAGCGCTTTATCTTGA
CAAAAGACGGGAGCACGGTAGCGGCCATGCGGAGCTGCATCGAGTGGGAACCCGAGACCTTCCCTCTGGCGGAGACGCTC
CTCGGCAAGCCGGTCATTCCCCTCGGCCTTCTGCCTCCGTCAGCCGAGGGAGCCCGCCGTGCCGCCGCCCAAGG------
AGAAGAGCACGCCACCGAGCAGTGGCTGAACGCGCAACCGCCCGACTCCGTTATTTACGTCGCACTGGGAAGCGAGGTGC
CGCTGCGCGTGGAGCAGGTGCACGAGATGGCGTTCGGGCTAGAGCTCGCCGGGACACGCTTCCTCTGGGCTCTGAGAAAG
CCCAGCGGCGCCGCCG---ACGACGACAGCGCCGACATGCTCCCTCCCGGTTTCCAGGACCGCACCAGCGG-------CC
GCGGGCTGGTGACCACGGGGTGGGTTCCCCAGATGAGCATCCTGGCGCACGCGGCCGTGGGCGGGTTCCTGACACACTGC
GGACGGAACTCGCTGATCGAGAGCCTCCTGTTCGGGCACCCTCTGGTGATGCTGCCCATCTACGGCGACCAAGGGCCGAA
CGCGCGGCAGATGGAGGCGAAGCAGGTGGGGTTGCAGGTGGCGAGGAACGAGGACGACGGGTCGTTCGACCGCCATGGCG
TCTCGACCGCCGTCCGGGCCGTCATGGTTGAGGAAGAGGCCAGGAGGGGCTTCGTGGCAGGCGCAGCAAAGATACAGGCG
GTCGTAGCTGATACGGAGCTCCACGGCAGGTACATCGATGAATTTGTCGAGCACCTCAGATCTTA---------------
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>chr5B_1555
GCCCTC--------------------------------------------------------------------------
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-------------------------------------------------------------------------GTTACGA
GGAGGAGGAGGTGGCACCAATTTACGACGACCATGGCGCGTC------GGGCATGTCCATCGTCCAGCGCTTCTATTTGA
CGAAAGAGAAGTGTGCGCTGGCGGCCATCCGGAGCTGCGTCGAGTGGGAGCCCGAGTCCTTCCCGCTGGTGCCGACGGTC
ATCGGCCTGCCGGTCGTGCCCCTCGGCCTTCTACCGCCGTCACCGGACGGAGGCCGCCGTGCCGACGGCATCAACGGATC
AGCAGAGCATGCCACCGTGCGCTGGCTGGACGCGCAGCCTGCAGGTTCGGTTGTGTACGTAGCGCTGGGGAGTGAAGTGC
CGCTGCGTGTGGAGCAGGTGCACGAGCTTGCCCTCGGGCTGGAGCTCGCCGGGACACGCTTCCTCTGGGCTCTTAGGAAG
CCCAGCGGCGCAGCAGTCCACGACGACGACGCCGACATGCTTCCTCCCGGCTTCCAAGAGCGCACTGGCGG-------CC
AGGGGCTGGTGACCACGGGGTGGGTTCCTCAGATGAGCATCCTGGCGCACGCCGCCGTGGGCGGGTTCCTGACGCACTGC
GGCCGGAACTCACTGATCGAGGGCCTCCTGTTCGGGCATCCGCTCGTCATGCTGCCCATCTTCGGGGACCAAGGGCCGAA
CGCGCGGCAGATGGAGGTGAAGAAGGTGGGGTTGCAGGTGGCGAGGAACGAGGACGACGGATCGTTCGACCGCCATGGCG
TCGCGAGCGCGATCCGGGCTGTGATGGTTGACGGAGATGCCCGGAGGAGCTTCGTGGCAGGTGCAGCGAAAATGCAGGAG
GTCGTAGCTAATACGGAGCGGCAGGAGAGGTACGTTGACGAGTTTGTTCATCGCCTTAGATCTTA---------------
--------------------------------------------------------------------------------
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>chr5A_1555
GCCCTC--------------------------------------------------------------------------
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-------------------------------------------------------------------------GTTACGA
GCAGGAGGACATGGCTCCCATGTTCGACGACCAAGGCGCATC------GGGTATGTCCCTCGCCCAGCGCTGGCAGTTGA
CCAAAGAGAGGTCCGCACTCGGGGTCATCCGGAGCTGCGTCGAGTGGGAGCCCGAGTCCTTCCCGCTGGTGCCAACTCTC
CTCGACATGCCGGTCGTGCCACTCGGCCTTCTGCCGCCGTCACCCGACGGAGGCCGTCGTGCCGGCGGCGCCAACGAATC
ATCAGAGCACGCCACCGTGCGCTGGCTGGACGCGCAGCGGCCCGGCTCGGTGGTGTACGTGGCGCTGGGGAGCGAAGTGC
CGCTGCCCCTGGAGCAGGTGCACGAGCTGGCCCTTGGGCTGGAGCTCGCCGGGACGCGCTTCCTTTGGGCTCTCCGGAAG
CCCAGTGGCGCCGCCGTCCTGGATGACGGCGCCGACATGCTTCCTCCCGGTTTCCAACAGCGCACTCGTGA-------CC
AGGGGCTGGTGACCACGGGCTGGGTTCCCCAGATGAGCATCCTGGCGCACGCCGCCGTGGGCGGGTTCTTGACGCATTGC
GGCCGGAATTCGCTGATCGAGGGCCTCCTGTTCGGTCACCCTCTCGTCATGCTGCCCATCTTCGGCGACCAAGGCCCGAA
TGCACGCCAAATGGAGGTGAAGAAGGTGGGGTTGCAGGTGGCGAGGGACGAGAGCGATGGGTCGTTCGACCGCCATGGCG
TCTCGAGCGCGGTCCGGGCTGTGATGGTTGACGGAGAGGCCAGGAGGAACTTCGTGGCAGGTGCAGCGAAGATGCAGGTA
GTCGTAGCTAATTCGGAACGGCAGGAACGGTACATCGACGAGTTTGTTCATCACCTTAGATC------------------
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-------
>SNPs
-S----SSSS-SSSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
---------------------------S-----------------------------------------S------S---
------S------------------------------------S------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
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----------SS---S-SS--------S-----S---S-------------S---------------------S-SSSS-
------------------------------SSSSSS----------------S-------------------SSSSSSSS
SS-SSSSSSSSSSSSSSSSSSSSSSSS---------SS-----S--------SSSSSSS---------------S-----
-----------------S----------S---S-----------------------------------------------
----------------------------------------------S---------------------------------
----------------------------------------------------------------S---------------
--------S-----------------------------------------------------------------------
---------------S-----S--------------S----SS-S--S--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S---------------------------S--------
S-------------------------------------------------------------------------------
----------------------------------------------------------------------------S---
---------------------------------S----------------------------------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S--------S--------------------------S-----------S-------------------------
-----------------------------------------------------------S--------------------
--------------------------------S-----------------------------------SS----------
---------S------------S--------------SSS--------S-----S---S---------------S-----
----SS-------------SS---S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS
>forward_366
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------ATGCGAGCACCAGGATTTGA----------------------------------
--------------------------------------------------------------------------------
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-------
>reverse_2288
--------------------------------------------------------------------------------
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-----------------------------------------------GGAGGCCTCACTGGATCATC-------------
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-------
>forward_368
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GCGAGCACCAGGATTTGAAC--------------------------------
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-------
>reverse_3287
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------TCAAATGGACGCCAAGAAGGT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>forward_1845
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------ATGGTCTGGTCTCGG
GTGAT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------
>reverse_3645
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------CCCAAAGGCTGTCCATAGCA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------
