>input_sequence_50935
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------------------------------------------ATGGCGAAGCTGGGGCTAGCAGTAGGCACGTCGACCAA
GTTCTCCTGCTTCTTCTTCTCCGACAAGAGCAACGCGGGCTCGGGGAGAGCCACGCGCCTCGGATGGATCCTCTGTCCTG
CAAATCCTAGGTGCCGGTATGTGC----ATCCAAGTGTACACCTCGCGAGCTGTAACTTTGCTCCTAATTAACGTTCATG
TAGTGTCTGCACTAACTAATTAAGTTTGCTGCGGCCAGTTTGGCGAGGAGATGGACCGCGGCCGC------GGCGGTGGA
GGCCCCGCCGAGGAGCATCGACATGGGGTGCGCGCCGGTGCCGCGGGAGCAGGCGGAGATCGTGCAGTCGCTGAACGGCT
GGGTGGCGGAGAACATGCTCCCGCTGCTCAACCCGGTGGAGTCCTCGTGGCAGCCGCACGACTTCATGCCGTGCTCCGCC
GCGACGCCCGGCGCGTCGGAGGAGGAGGCTCTGTCCGCCTTCATGGACGGCGTGGCTGCGCTGCGCGCGGGAGCCGCCCG
CGTGCCCGACGAGGTCCTGGTCTGCCTGGTGGGCAACATGGTGACGGAGGAGGCGCTCCCGTCGTACCAGAGCATGGGGA
ACCGCACGGAGGGCATCGCGGACGACACCGGGGCCAGCAGCCTCCCCTGGGCGCAGTGGATCCGCGGCTGGACGGCCGAG
GAGAACCGCCACGGCGACCTCCTCAACCGCTACCTCTACCTCTCCGGCCGCGTCGACATGCGCCAGGTCGAGACCACCGT
CCACCACCTCCTCCGCAACGGCATGGTACGTA-----CGC----GCATAAACACAGTTGCACCGTACGTACTCAGTGCAC
TACAAACTTGTGCACTGATTAATT-AAAACAT-TATATATGTTGTTTTGCTATGAAGGAGATGCTGGTGCCCAAGAGCCC
GTACCACAGCGTGATCTACGGCGCGTTCCAGGAGCGCGCGACCTTCGTCTCCCACGTGCACACGGCGAGGCTCGCCGGGC
AGCACGGCGACCAGGCGCTCGCCAAGATCTGCGGCGTGATTGCCGCCGACGAGAAGAGGCACGAGGCGGGCTACACCAGG
GTGTGCGCCAAGCTCTTCGAGCTGGACCCCGACGGCATGGTGCGCGCGCTGGCGCACGTCATGCGCGGCAAGGTCACCAT
GCCGGGGCTGCTCATGTCCGACGGCCGCGACGCCGCCAGTGGCGAGAACAGCCTGTTCGAGCGGTTCTCCGCCGTGGCGC
AGAGTGCCGGCGTGTACACGGCGAGGGACTACGGCGATCTGGTGGAGCACTTCGTGCGCAGGTGGCGGGTGGCGGAGCTC
GCCGGA------CTCTCTGGAGAGGGCCGCCGGGCGCAGGAGTACGTGTGCGGGCTGCCGCCCAAGATCCGGAGGATGGA
GGAGCTGGCACACCAAAGGGCGGCCCGTAGCGAGCTCAGGCCGGCCCGCTTCAGTTGGATCTTCGATAGGCACGTCACGG
TGGGCTGA------------------------------------------------------------------------
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------------------------------------------------
>chr3A_1_TraesCS3A01G418000
ATCGTTGTATGGTGATAAGCTATACATGGCTCTTGGGACTGTGCAATTCAGGAACGATGACTCTGCCGAAAAAATGCCAT
GCATGTGCGCCATTGATGTCGTAGCGCATTCATTTCATTGGGTTGGCTGTTCCATACTCCTATGTTCTTGCCATATCCGG
TCCCTGTTGAGCATTATTACGGCATCTTTAACGTTGGAACCTCGAAAGCCTCTAAATATCTAGACCGTATGATTTGTTAT
CCAACGGGGAACATCAAATGTCCATATAGAGTTGTCATGCTCGGGTGACCAAAGTGAGCTCATGACGTACCGTTGATGAA
TATTGTTCGGTTTAAAAATTCACAAATCGAAGGCAAAAGTGTACTCCCTCCATTCCATAATGTAGAGCTTTCTCTATCCA
CGTGCTTCAACTTTGACCATAAATTTAACTACCAAGATCGATTGCATCGGGAGCAAAAACTATATCAGTGAATTTGTATT
CGAATGAAGTTTTCAATTATATAATTTTTTTCTCCCACCGCAGTTGGTCTCGTTGGTTAAATTTATGGTCAAAGTTGAAT
CTCGGAAAGCGCGGGCGCACTATATTTTGGAATGAAGGGAGTAGTATGTTTGGGGGAGTCCGAACACACTATGGACGAGT
CTTGGCCCCATCACTAGCCCATTTTTTCCCTCTCTCTCCCTTCTCTCTCCTCTCTCCATTGGACAAGGGGTGTACTCCCC
CCATTCCTAAATATATATGTCTTTTTAGAGATTTCAACAAGTGACTCTATATGAAGTAAAATGAGTGAATATATATACTC
TAAAATATGTCTATATACATCCGTATGTAGTAGTCTATTTGAAATTTTTAAAAAGACATATATTTAGAAACGGAGGGCCT
ATGCATGGGTTGCATGGCAGCCCCACTATCCTTTCATTTCCTTTTATATATAGAAGACAGGCACCGTGTGTA-AGTACAG
AATCATTCACAAATCCAGCAAAATACGAGTGTTT-GTGATCGATGGCGAAGCTGGGGCTAGCAGTAGGCACGTCGACCAA
GTTCTCCTGCTTCTTCTTCTCCGACAAGAGCAACGCGGGCTCGGGGAGAGCCACGCGCCTCGGATGGATCCTCTGTCCTG
CAAATCCTAGGTGCCGGTATGTGC----ATCCAAGTGTACACCTCGCGAGCTGTAACTTTGCTCCTAATTAACGTTCATG
TAGTGTCTGCACTAACTAATTAAGTTTGCTGCGGCCAGTTTGGCGAGGAGATGGACCGCGGCCGC------GGCGGTGGA
GGCCCCGCCGAGGAGCATCGACATGGGGTGCGCGCCGGTGCCGCGGGAGCAGGCGGAGATCGTGCAGTCGCTGAACGGCT
GGGTGGCGGAGAACATGCTCCCGCTGCTCAACCCGGTGGAGTCCTCGTGGCAGCCGCACGACTTCATGCCGTGCTCCGCC
GCGACGCCCGGCGCGTCGGAGGAGGAGGCTCTGTCCGCCTTCATGGACGGCGTGGCTGCGCTGCGCGCGGGAGCCGCCCG
CGTGCCCGACGAGGTCCTGGTCTGCCTGGTGGGCAACATGGTGACGGAGGAGGCGCTCCCGTCGTACCAGAGCATGGGGA
ACCGCACGGAGGGCATCGCGGACGACACCGGGGCCAGCAGCCTCCCCTGGGCGCAGTGGATCCGCGGCTGGACGGCCGAG
GAGAACCGCCACGGCGACCTCCTCAACCGCTACCTCTACCTCTCCGGCCGCGTCGACATGCGCCAGGTCGAGACCACCGT
CCACCACCTCCTCCGCAACGGCATGGTACGTA-----CGC----GCATAAACACAGTTGCACCGTACGTACTCAGTGCAC
TACAAACTTGTGCACTGATTAATT-AAAACAT-TATATATGTTGTTTTGCTATGAAGGAGATGCTGGTGCCCAAGAGCCC
GTACCACAGCGTGATCTACGGCGCGTTCCAGGAGCGCGCGACCTTCGTCTCCCACGTGCACACGGCGAGGCTCGCCGGGC
AGCACGGCGACCAGGCGCTCGCCAAGATCTGCGGCGTGATTGCCGCCGACGAGAAGAGGCACGAGGCGGGCTACACCAGG
GTGTGCGCCAAGCTCTTCGAGCTGGACCCCGACGGCATGGTGCGCGCGCTGGCGCACGTCATGCGCGGCAAGGTCACCAT
GCCGGGGCTGCTCATGTCCGACGGCCGCGACGCCGCCAGTGGCGAGAACAGCCTGTTCGAGCGGTTCTCCGCCGTGGCGC
AGAGTGCCGGCGTGTACACGGCGAGGGACTACGGCGATCTGGTGGAGCACTTCGTGCGCAGGTGGCGGGTGGCGGAGCTC
GCCGGA------CTCTCTGGAGAGGGCCGCCGGGCGCAGGAGTACGTGTGCGGGCTGCCGCCCAAGATCCGGAGGATGGA
GGAGCTGGCACACCAAAGGGCGGCCCGTAGCGAGCTCAGGCCGGCCCGCTTCAGTTGGATCTTCGATAGGCACGTCACGG
TGGGCTGAACCATGGACTAACGTATGTTTGGTTTGCCTCAAAAGAAAAACATATGTTTGGTTAGATTCCCATCCTCAAAA
AAAAAGTTTAGTTAGATTCCGCTCCTCCCCTAAAAAAAGGAAAAACGTTTATGTTTGGTTACGTAGGCTACGCATATGTT
TGGTTAGATTCCCCTCCGGAGCATTTATGGGAGCGTTTGGATCGCTCGCCAGCATACCTCGCCAGGCAAGGCAATCCTTG
CCAACGGAGGCGAGCCGATTTGGCTAGCTAAGTCAAAAAAAGAAAAAACTGGAAACCACATGACACCAGGCAGGCTCGCT
CGGGAACCAAATCCCTCGCTTCCTTGCTGAGCCAGGCTAAGATAGTGCTTGCCGGATAACCAAACGTATCCTATGTATTT
CCTGTAAACGTTGATCTTATGCAATAAAGCACCATTCAAAATAACCCAGGAGATGAATGACATGTTGAATGCTCCTTACA
CTCAAAAGGAAGTAAAAACAGCACCCTTCCAAATGTTCCCTACTAAGTCACCGGGTCCGGATGGTTTTCTGGCCCATTTC
TTTCGGCGACATTGGTAGATTTGTGGGAATGATGTTATCAAAGCAGTTCTTGACATTATGGAGGGGAAGGAGTCAGCAAA
AAGTATCAATGAGACCATCTTGGTGTTGATCCCAAAGGTGAAAATCCCCACTCTGTTATCACAATTCCGGCCTATCGGTC
TTTGCAGCGTCCTCTATAAAATTGCTTCAAAAGTAATCTCCAACCGTCTGAAAATTATTTTGCCTGAGATTATTTCTGAT
GAGCAGTCAGCATTTGTGCCAGGGAGACTCATCACTAATAATATTGTGACTGCTTATGAGTGCTTACATTTCATAAAGAG
AAACAAGGCCAAGAAACACCAATCATATGCATAAGTATCTTTCTGGGTAATGTCTGCCTACCGCCCCACACAAAAAAGAA
AGTGTTGGAGGGAGGCATCTTTGCTGTAAATTTTGTGTGCGAGCCATC
>chr3B_940
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-----------------------------------------------------------GGCACCGTATGTGTAGCTGAG
ATACATTCCTATATTTAGCAACAACACGAGTATCAGTGATCAATGGCGAAGCTGGGGCTAGCAGTGGGCACGTCGGCGAA
GCT------CTGCTTCTTCTCCAACAAGAGCGACGCGGGCTCGGGGAGAGCCACGCGCCTCGGATGGATCCTCTTCCCTG
CAAATCATAGGT---GCAGGTATATGCAATGCAAGTGTGCAACTTCCGAGCGATACGCATGCAG----------------
------CTCCACTGACTAATTAGCTTTGCTGCGGCCAGTTTGGCGACGAGATGGACCGCGGCCGCGGCCGAGGCGGTGGA
GGCCCCGCCGAGAAGCATCGACATGGGGCACGCGCCGGTGGCGCGGGAGCAGGTGGAGATCGTGCAGTCGCTGAACGGCT
GGGTGGCGGAGAACATGCTCCCGCTGCTCAACCCGGTGGAGTCCTCGTGGCAGCCGCACGACTTCCTGCCGTGCTCCGCC
GCGGCACCCGGCGCGTCGGAGGAGGAGGCCCTGTCCGCCTTCACGGAGGGCGTGGCTGCGCTGCGCATGGGAGCCGCCGG
CGTGCCTGACGACATCCTGGTCTGCCTGGTGGGTAACATGGTGACGGAGGAGGCGCTGCCGTCGTACCAGAGCATGGGGA
ACCGCACGGAGGGCACCGCGGATGACACCGGCGCCAGCAGCCTCCCCTGGGCGCAGTGGATCCGCGGCTGGACGGCCGAG
GAGAACCGCCACGGCGACCTCCTCAACCGCTACCTCTACCTCTCCGGCCGCGTCGACATGCGCCAGGTCGAGACCACCGT
CCACCACCTCCTCCGCAACGGCATGGTACGTA-----CGCACATACATAAACACAGTTGCACCGGACGTACTCAGTACAC
TACCAACTTGTGCACTGGTTAATT-AAACATTATATATATGTTGTTATGCTATGAAGGAAATGCTGGTGCCCAAGAGCCC
GTACCACAGCGTGATCTACGGCGCGTTCCAGGAGCGCGCGACCTTCGTCTCCCACGTGCACACGGCGAGGCTCGCCGGGC
AGCACGGCGACCAGGCGCTCGCCAAGATCTGCGGCGTGATTGCCGCCGACGAGAAGAGGCACGAGGCGGGCTACACCAGG
GTGTGCGCCAAGCTCTTCGAGGTGGACCCCGACGGCATGGTCCGCGCGCTGGCGCACGTCATGCGCGGCAAGGTCACCAT
GCCGGGGCTGCTCATGTCCGACGGCCGCGACGCCGCCAGCGGCGAGAACAGCCTGTTCGAGCGGTTCTCCACCGTGGCGC
AGAGTGCCGGCGTGTACACGGCGAGGGACTACGGCGATCTGGTGGAGCACTTCGTGCGCAGGTGGCGGGTGGCGGAGCTC
GCCGGG------CTCTCTGGAGAGGGCCGCCGCGCGCAGGAGTACGTGTGCGGGCTGCCGCCCAAGATCCGGCGGATGGA
GGAGCTGGCAAACCAGAGGGCGGCCCGTAGCGAGCTCCGTCCGGCCCGCTTCAGTTGGATCTTCGATAGGCACGTCATGG
TGGGCTGAAGCATGGGCTTCTATGCCTTATACGTAGACTTTT------ACGTATGTTTGGTTAGATTCCCATCCTCGAAA
AAA--GTTAGGTTAGAATCCCCTCCGTCTCTAAAAAAAAGGA--------------------------------------
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------------------------------------------------
>chr3D_946
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-----------------------------------------------------------------GTGTGCA-AGCTAAG
ATTCATTCCTATATTTAGCAACAACGCGGGTATTGGTGATCGATGGCGAAGCTGGGGCTAGCAGTAGGCACGTCGGCGAG
GTTCTC---CTGCTTCTTCTCCAACAAGAGCGACGCGGGCTCGGGGAGAGCCACGCGCCTCGGATGGATCCTCTTCCCTG
CAAATCCTAGGTGCAGCAGGTATATGCAATGCAAGTGTGCAACTTCCGAGCTATATGCATGCAG----------------
------CTCCACTAACTAATTAGCTCTGCCGCGGCCAGTTTGGCGACGAGATGGACCGCGGCCGCGGCCGCGGCGGTGGA
GGCCCCGCCGAGAAGCGTCGACATGGGGTGCGCGCCGGTGCCGCGGGAGCAGGTGGAGATCGTGCAGTCGCTGAACGGCT
GGGTGGCGGAGAACATGCTCCCGCTGCTCAACCCTGTGGAGTCCTCGTGGCAGCCGCACGACTTCCTGCCGTGCTCCGTC
GCGGCACCCGGCGCGTCGGAGGAGGAGGCCCTGTCCGCCTTCACGGAGGGCGTGGCTGCGCTGCGCATGGGAGCCGCCGG
CGTGCCTGACGAGATCCTGGTCTGCCTGGTGGGTAATATGGTGACGGAAGAGGCGCTGCCGTCGTACCAGAGCATGGGGA
ACCGCACGGAGGGCACCGCGGATGACACCGGCGCCAGCAGCCTCCCCTGGGCGCAGTGGATCCGCGGCTGGACGGCCGAG
GAGAACCGCCACGGCGACCTCCTCAACCGCTACCTCTACCTCTCCGGCCGCGTCGACATGCGCCAGGTCGAGACCACCGT
CCACCACCTCCTCCGCAACGGCATGGTACGTAATATACGC----ACATAAACACAGTTGCACCATACGTACTCAGTGCAC
TACCAACTTGTGCACTGGTTAATT-AAACATTATATAT--GTTGTTTTGCTGTGAAGGAAATGCTGGTGCCCAAGAGCCC
GTACCACAGCGTGATCTACGGCGCGTTCCAGGAGCGCGCGACCTTCGTCTCCCACGTGCACACGGCGAGGCTCGCCGGGC
AGCACGGCGACCAGGCGCTCGCCAAGATCTGCGGCGTGATTGCCGCCGACGAGAAGAGGCACGAGGCGGGCTACACCAGG
GTGTGCGCCAAGCTCTTCGAGGTGGACCCCGACGGCATGGTGCGCGCGCTGGCGCACGTCATGCGCGGCAAGGTCACCAT
GCCGGGGCTGCTCATGTCCGACGGCCGCGACGCCGATGG---------CAGCCTGTTCGAGCGATTCTCCGCCGTGGCGC
AGCGTGCCGGCGTGTACACGGCGAGGGACTACGGCGATCTGGTGGAGCACTTCGTGCGCAGGTGGCGGGTGGCAGAGCTC
GCCGGA------CTCTCTGGAGAGGGCCGCCGCGCGCAGGAATACGTGTGCGGGCTCCCGCCCAAGATACGGAGGATGGA
GGAGCTGGCACACCAGAGGGCGGCCCGTAGCGAGCTCAGGCCGGCCCGCTTCAGTTGGATCTTCGATAGGCACGTCATGG
TGGGCTGAAGCATGGGTTTCTATGCCTTATACGTAGACTTG--------CGTATGTTTGGTTCGATTCCCATCCTCAAAA
AAAAAA-TTGGTTAGATTCCCCTCCGCCCCTAAAAATAAG----------------------------------------
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------------------------------------------------
>chr3A_1409
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------------------------------------------------------------ACTTCCTGCCGTGCTCCGCC
GCGACGCCCGGCGCGTCGGAGGAGGAGGCTCTGTCCGCCTTCATGGACGACGTTGCCACGCTGCGCGCGGGAGCCGCCGG
CGTGCCCGACGAGGTCCTGGTCTGCCTGGTGGGCAACATGGTGACGGAGGAGGCGCTGCCGTCGTACCAGAGCATGGGGA
ACCGCACGGAGGGCATCGCGGACGACACCGGCGCCAGCAGCCTCCCCTGGGCGCAGTGGATCCACGGCTGGACGGCCGAG
GAGAACCGCCACGGCGACCTCCTCAACCGCTACCTCTACTTCTCCGGCCGCGTCGACATGCGCCAGGTCGAGACCACCGT
CCACCACCTCCTCCGCAACGGCATGGTACGTA-----CGC----GCATAAACACAGTTGCACCGTACGTACTCAGTGCAC
TACAAACTTGTGCACTGGTTAATTAAAACATTATATAT--GTTGTTTTGCTATGAAGGAGATGCTGGTGCCCAAGAGCCC
GTACCACAGCGTGATCTACGGCGCGTTCCAGGAGCGCGCGACCTTCGTCTCCCACGTGCACACGGCGAGGCTCGCCGGGC
AGCACGGCGACCAGGCGCTCGCCAAGATCTGCGGCGTGATTGCCGCCGACGAGAAGAGGCACGAAGCGGGCTACACCAGG
GTGTGCGCCAAGCTCTTCGAGGTGGACCCCGACGGCATGGTGCGCGCGCTGGCGCACGTCATGCACGGCAAGGTCACCAT
GCCGGGGCTGCTCATGTCCGACGGCCACGACGCGGCCAGTGGCGAGAACAGCCTGTTCGAGCGGTTCTCCGCCGTGGCGC
AGAGTGCCGGCGTGTGCACGGCGAGGGACTACGGCGATCTGGTGGAGCACTTCATGCGCAGGTGGCGGGTGGCAGAGCTC
GCCGGA------CTCTCTGGAGAAGGCCGCCGCGCGCAGGAATACGTGTGCGGGCTGCCGCCCAAGA-------------
GGAGCTGGCACACCAGAGGGTGGCCCGTAGCGAGCTCAGGCCGGCCCGCTTCAGTTGGATCTTCGATAGGCACGTCATGG
TGGGCTGAACCATGGACTAACGTATGTTTGGTTTGCCTCAAAAGAAAAACATATGTTTGGTTAGATTCCCATCCTCAAAA
AAAA-GTTTAGTTAGATTCCGCTCCTCCCCTAAAAAAAGGGAAAACGTTT------------------------------
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------------------------------------------------
>chr5A_1500
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-----------------------------------------------------------------------AGCCTCCGG
CGTTCCGGATGACGTGCTGGTCTGCCTGGTGGGCAACATGGTAACGGAGGAGGCGCTGCCGACGTACATGTGCATGGGCA
ACCGGGTGCCGGGCTACCGCGACGACACAGGCTGCAGCGACCTCCCCTGGGCGCGCTGGATCCGCGGATGGACGGCCGAG
GAGAACCGCCACGGCGACCTCCTCAACGGCTACCTCTACCTCTCCGGCCGCGTCGACATGCGCCAGATCGAGCGGACCGT
CCACCACCTCCTCCGCAATGGCATGC------------------------------------------------------
----------------------------------------------------------AGATGCTCAGGCCGTCCAGCCC
CTACCACAATGCCGTCTATGGTTCCTTCCAGGAGCGCGCAACCTTCATCTCCCACGCCCACACCGCCAAGCAAGCTGCGC
GCCACGGCGACCGCTGCCTCGCTAAGATCTGCGGCGTCGTCGCCGCCGACGAGAAGCGCCACGAGACGGCCTACACCAAG
GTGGCCGCCAAGATCTTCGAGCTCGACCCGGACGGAATGGTGCGGGCGCTGGCCGCCGTGCTGCGGGACAAGATCACCAT
GCCCGGCCAGCTCATGACCGACGGCCGCGACGCCGA---------------CCTGTTCGAGCACTTCTCGGCGGTGGCGC
AGCGCACCGGGGTGTACACAGCAAGGGACTACGGCGACATGGTGGAGCACTTCGTGCGGAGGTGGAAGGTGGCGGACCTC
GGCGGGGGGCAGTTGTCCAGCGAGGGGCGGCGCGCGCAGGAGTACGTGTGCGGGCTGCCGCGCAAGATCCGGCGGGTGGA
GGAGCTGGCCCAC-------------------------------------------------------------------
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------------------------------------------------
>chr5B_1500
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-----------------------------------------------------------------------AGCCTCCGG
CGTACCAGACGACGTGCTGGTGTGCCTGGTGGGCAACATGGTAACGGAGGAGGCGCTGCCGACGTACATGTGCATGGGCA
ACCGGGTGCCGGGCTACCGCGACGACACAGGCTGCAGCGACCTCCCCTGGGCGCGCTGGCTCCGCGGTTGGATGGCCGAG
GAGAACCGCCACGGCGACCTCCTCAACCGCTACCTCTACCTCTCCGGCCGCGTCGACATGCGCCAGGTCGAGCGGACCGT
CCACCACCTCCTCCGCAATGGCATGC------------------------------------------------------
----------------------------------------------------------AGATGCTCAGGCCGTCCAGCCC
CTACCACAATGCCATCTATGGTTCCTTCCAGGAGCGCGCGACCTTCATCTCTCACGCCCACACCGCCAAGCAAGCTGCGC
GCCACGGCGACCGCTGCCTCGCTAAGATCTGCGGCGTCGTCGCCGCCGACGAGAAGCGCCACGAGACGGCCTACACCAAG
GTGGCCGCCAAGCTCTTCGAGCTCGACCCGGACGGAATGGTGCAGGCGCTGGCCGCCGTGCTGCGGGACAAGATCACCAT
GCCCGGCCAGCTCATGACCGACGGCCGCGAGGCCGA---------------CCTGTTTGAGCACTTCTCAGCGGTCGCGC
AGCGCACCGGGGTGTACACGGCAAGGGACTACGGCGACATGGTGGAGCACTTCGTGCGGAGGTGGAAGGTGGCTGACCTC
GCCGGGGGGCAGCTGTCCGGCGAGGGGCGGCGCGCGCAGGAGTACGTGTGCGGGCTGCCGCGCAAGATCCGGCGGGTGGA
GGAGCTGGCCCAC-------------------------------------------------------------------
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------------------------------------------------
>chr5B_1500
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------AGCCTCCGG
CGTGCCGGACGACGTGCTGGTGTGCCTGGTGGGCAACATGGTAACGGAGGAGGCGCTGCCGACGTACATGTGCGTGGGAA
ACCGGGTGGCGGGCTGCAGCGACGACACGGGCTGCAGCGACCTGCCCTGGGCGCGCTGGATCCGCGGATGGACGGCCGAG
GAGAACCGCCACGGCGATCTCCTCAACCGCTACCTCTACCTCTCCGGCCGTGTCGACATGCGCCAGGTCGAGCGGACCGT
CCACCACCTCCTCCGCAACGGCATGC------------------------------------------------------
----------------------------------------------------------AGATGCTCAGGCCGTCCAGCCC
CTACCACAACATCGTCTACGGTTCCTTCCAGGAGCGTGCCACCTTCATCTCCCATACCCACACCGCCAAGCACGCCGCGC
GCCACGGCGACCGCTGCCTCGCCAAGATCTGCGGCGTCGTGGCCGCCGACGAGAAGCGCCATGAGACGGCCTACACCGAG
GCGGCCGCCAAGTTGTTCGAGCTCGACCCGGACGGGATGGTGCGGGCGCTGGCCGCCGTCCTGCGGGACAAAATCACCAT
GCCTGGCCAGCTCATGACCGATGGCCGCGACGCTGA---------------CCTGTTCGAGCACTTCTCGGCGGTCGCAC
AGCGCACCGGGGTGTACACGGCAAGGGACTACGGCGACATGGTGGAGCACTTCGTGCGGAGGTGGAGGGTGGCGGACCTC
GCCGGGGGGCAGCTGTCCGGCGAGGGGCGGCGCGCGCAGGAGTACGTGTGCGGGCTGCCGCGAAAGATCCGGCGGGTGGA
GGAGCTGGCCCAC-------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------
>chr5D_1500
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------AGCCTCCGG
CGTGCCGGACGACGTGGTGGTGTGCCTGGTGGGCAACATGGTGACGGAGGAGGCGCTGCCGACGTACATGTGCGTGGGAA
ACCGGGTGGTGGGCTGCAGCGACGACACGGGCTGCAGCGACCTGCCCTGGGCGCGCTGGATCCGCGGGTGGACGGCCGAG
GAGAACCGCCACGGCGACCTCCTCAACCGCTACCTCTACCTCTCCGGCCGCGTCGACATGCGCCAGGTCGAGCGGACCGT
CCACCACCTCCTCCGCAACGGCATGC------------------------------------------------------
----------------------------------------------------------AGATGCTCAGGCCGTCCAGCCC
CTACCACAACATCGTCTACGGTTCCTTCCAGGAGCGCGCCACCTTCATCTCCCATACTCACACCGCCAAGCACGCCGCGC
GTCACGGCGACCGCTGCCTCGCCAAGATCTGCGGCGTCGTCGCCGCCGACGAGAAGCGCCACGAGACGGCCTACACCAAG
GCGGCCGCCAAGTTCTTCGAGCTCGACCCGGACGGGATGGTGCGGGCGCTGGCCGCCGTCCTGCGGGACAAAATCACCAT
GCCAGGCCAGTTCATGACCGACGGCCGCGACGCCGA---------------CCTGTTCGAGCACTTCTCGGCGGTCGCGC
AGCGCACCGGGGTGTACACGGCAAGGGACTACGGCGACATGGTGGAGCACTTCGTGCGGAGGTGGAAGGTGGCGGACCTC
GGCGGTGGGCAGCTGTCCGTCGAGGGGCGGCGCGCGCAGGAGTACGTGTGCGGGCTGCCGCGCAAGATCCGGCGAGTGGA
GGAGCTGGCCCAC-------------------------------------------------------------------
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------------------------------------------------
>chr5D_1500
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------AGCCTCCGG
CGTTCCGGACGATGTGCTGGTGTGCCTGGTGGGCAACATGGTAACGGAGGAGGCGCTGCCGACGTACATGTGCATGGGCA
ACCGGGTTGCGGGCTATCGCGACGACACAGGCTGCAGCGACCTGCCCTGGGCGCGCTGGATCCGCGGTTGGACGGCCGAG
GAGAACCGCCACGGCGACCTCCTCAACCGCTACCTCTACCTCTCCGGCCGCGTCGACATGCGCCAGGTCGAGCGGACCGT
CCACCACCTCCTCCGCAATGGCATGC------------------------------------------------------
----------------------------------------------------------AGATGCTCAGGCCGTCCAGCCC
CTACCACAATGCAATCTATGGTTCCTTCCAGGAGCGCGCGACCTTCATCTCTCACGCCCACACCGCCAAGCAAGCTGCGC
GCCACGGCGACCGCTGCCTCGCTAAGATCTGCGGCGTTGTCGCCGCCGACGAGAAGCGCCACGAGACGGCCTACACCAAG
GTGGCCGCCAAGGTCTTCGAGCTCGACCCGGACGGAATGGTGCAGGCGCTGGCCGCGGTGCTGCGGGACAAGATCACCAT
GCCCGGCCAGCTCATGACCGACGGCCGCGACGCCGA---------------CTTGTTCGAGCACTTCTCGGCGGTCGCGC
AGCGCACCGGGGTGTACACGGCAAGAGACTACGGCGACATGGTGGAGCACTTCGTGCGTAGGTGGAAGGTGGCGGACCTT
GGCGGGGGGCAGCTGTCCGGGGAGGGGCGGCGCGCGCAGGAGTACGTGTGCGGGCTGCCGCGCAAGATCCGGCGGGTGGA
GGAGCTGGCCCAC-------------------------------------------------------------------
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------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------SSS--
-S------SS-S--SS-----S-SSSSS-SSS-------------------------------------------S-S--
------SSS--S----------S--------S------------------------------------------SS----
--------------S-SSSSSSSS------S-------S--S--SS------S--SSSS---SSSSSSSSSSSSSSSSSS
SSSSSS--S-------------SS----------------------S---------------------------------
------------S----------------------------------------S--------------------------
-----------------------------------------------------------------S--------------
------------------------------------------------------------------------------S-
---------------------------------------------------------S----------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S----------SSS-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
---------------S-------------------------------------------------------------S--
--------------------------------------------------------------------------------
----------------------------------------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_287
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AGAGTTGTCATGCTCGGGTG---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>reverse_1165
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CGCGAGCTGTAACTTTGCTC----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>forward_288
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GAGTTGTCATGCTCGGGTGA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>reverse_1578
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------CCCGTCGTACCAGAGCATG----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>forward_625
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------ATGTTTGGGGGAGTCCGAAC---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>reverse_2637
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TGTT
TGGTTAGATTCCCCTCCG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
