>input_sequence_50879
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--------------------------------------------ATGGCGCCTCCTCAGTCCGACGAGCAGCTCGTCGAC
GATCCTGCCATGGTGGACATTACTCCTCCTCATCCCGACGAGCATTTCAGCGGTGAGCCGGCCGTGGAAGACACCGCCCC
TCCTCGATTCTCCGACGAGCAACAACTCGGGAGCGTGCCGCAAACCACGCTGATGCCGTACGCGGCCGTGGATTCCTCGC
TGCGCGCCATGGCCGCTCAGGCCGAGGGCTTCGGCCGGCACGCCATCGGCGGCCTCCACGGCGACGTCTACCACGTCACC
ACCCTCAATGGTACGCACGGCACCATCTCTCC----GTTAATTCTCTGC---ATCATCATCTGCTGTCACTCTGACA---
----------CTGAAGCTGAACGACGTGTTATCTAAGACGACGGGCCCGGCTCGCTGCGGGACGGCTGCCGGCGCCAGGA
GCCGCTGTGGATCGTCTTCGACGTGTCCGGCACCATCCGCCTCGCGTCGGGGCTGCGCGTGTCCTCCCACAAGACCGTGG
ACGGCCGCGGGCGGCGCGTGACGCTGTCCGGCAAGGGCCTCCTTCTCCGCGAGTGCGAGCACGTGATCCTGTGCAACCTG
GAGGTGGAGGGCGGGCGCGGGCACGACGCCGACGCCGTCCAGGTCAAGCCCGGGTCGAGGCACGTGTGGGTGGACCGCTG
CAGCCTGCGCGACTTCGCCGACGGCCTCCTGGACGTCACCTGCGGCAGCACGGACGTGACGGTCTCCCGGTGCCGCTTCT
CGGCGCACGACAAGGCCGTGCTGATCGGCGCCAGCAGCGAGCACGTCGGGGACCGGCGCATCCGGGTGACCATCCACCAC
TGCCTCTTCGACGGCACGCGGCAGCGGCAGCCCCGCGTCCGGTTCGGCCGGGTGCACCTCTACAACAACTACACCAGGGG
CTGGGGCATCTACGCCGTCTGCGCCAGCGTGGAGTCGCAGGTGCGGTTCACGCGAAACTGCTCACACGCCGCATGCCATA
AGCGTGTGTAGTGTGTAGTAGTGCTGATCTGCACGCTTGATATGGCTGCAGATTGTCTCCCAGTGCAACATCTACGAGGC
GGGGGAGAAGAAGAAAGTGTTCACGTACATGAGCGAGCAGGTCTCGTATTACATTTACATACACTGGGCCTTACAGATCT
GAATTTCATTTTTTGTAGCTGAAAAGCTTTGGGTTTGTGACTGATGCAGGCGGCGGACAGAGACTGCAGTTCAAGTGGGC
GCATCCGGTCTGAAGGCGACCTGTTCCTGAACGGTGCGCAGGAGTACACGGAAAATGACTCAGAGACTGCAGAAGACAAC
CGGTGGGACTTTGAGGTCCGGGATTGCTACAAGCCGTGGTCGGTGCAGCCCGCGTCGATGGCGCTCAAGGAGCTACTGGA
GTCCTGCACCGGCTGGCAGCCGGTTCCGCTGCCGGAAGACG---TCTGCTTCACAAGAGCACCTGCTGCTG---------
-------------CCACGACATTTGTCTGA--------------------------------------------------
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>chr3D_1_TraesCS3D01G348900
AGGGACCAGCAATGTGACAGCTTAGTCGTCCGGATGTCAGGGTGTTGACCTTGGATCTTGTGGTGTAGTGACTCGTGTGG
CAATGATGATGGGTAGACAGAAGAGATGGACAACAACATGTCCTTCGTTGTTGACTGCGTGGTAGGTCCTAGGTTTGTCC
TTGCAACTTCTTGTTTGTGTAGCGGTGTAGTCGGAGCTATGGTGTTACCGGACGACATGGCAACAATGATGCCTTGCGAA
AGGTAGGATCTACACCCAACAATCTCCCGTAGCACGCGGGATTCTGCAGATGCAATGTGTGCATCTCTCATGCGAGG-TC
GCTATCGAAGTCGAGTTCCCAGTTCTTGATGTGTTTGATCGGTTTATTTAGCATGAACTGGTCGGATCCAGTGTGTCAGT
GAGACAGTGACAGAGAGGGCTTCGTTCGTCATCAATGATTAAGCCGAAGCTATTTGCTCGGGAAGACGTGATGACAATGA
TAGTTGCAGGCAAAACCTTGACAATATTCCTTTCCTCCGTGGCATGTGGGTCTTTTTGGATAAGCAGGTCGGGCGGGATG
CCCTACTTTGTGGGCGTGATGCAACATTTTTCTTCTGGCATTGATTAATCGTAAAAAAACCTTTTTCTTTAATCTATGGA
TTGAACACCAAGGCTCCGGTGTGGAAAAAATTTCTACTAAGTTTTTTTTTTTCTTAGGCAAGGGAAAATTTTCAAGTATT
TATGAGCATTTCTTTAAACACAAAAGGTATTCCAAGTATTTACAGAGGTAGTAGTATTTTTTTTAGGGGTGAGAAGGTA-
-TATGAGCATTTCCCCGTTTC-AAATTTACTTCTCTTTGGGCCGGCCTGAAACGCCCCCGCGACACAACTCACCAGCGAA
AACGGCCCAGACAATTAAAGTCCGACAGTAAGCAGCAGCCGTTCTTTCCCGAGGGCGCCTCAACAAATACCGAACCAACG
TGTTCTCTGTTCGTTCACTCGATCACTGTTCACTGTCCTACGCCATGGCGCCTCCTCAGTCCGACGAGCAGCTCGTCGAC
GATCCTGCCATGGTGGACATTACTCCTCCTCATCCCGACGAGCATTTCAGCGGTGAGCCGGCCGTGGAAGACACCGCCCC
TCCTCGATTCTCCGACGAGCAACAACTCGGGAGCGTGCCGCAAACCACGCTGATGCCGTACGCGGCCGTGGATTCCTCGC
TGCGCGCCATGGCCGCTCAGGCCGAGGGCTTCGGCCGGCACGCCATCGGCGGCCTCCACGGCGACGTCTACCACGTCACC
ACCCTCAATGGTACGCACGGCACCATCTCTCC----GTTAATTCTCTGC---ATCATCATCTGCTGTCACTCTGACA---
----------CTGAAGCTGAACGACGTGTTATCTAAGACGACGGGCCCGGCTCGCTGCGGGACGGCTGCCGGCGCCAGGA
GCCGCTGTGGATCGTCTTCGACGTGTCCGGCACCATCCGCCTCGCGTCGGGGCTGCGCGTGTCCTCCCACAAGACCGTGG
ACGGCCGCGGGCGGCGCGTGACGCTGTCCGGCAAGGGCCTCCTTCTCCGCGAGTGCGAGCACGTGATCCTGTGCAACCTG
GAGGTGGAGGGCGGGCGCGGGCACGACGCCGACGCCGTCCAGGTCAAGCCCGGGTCGAGGCACGTGTGGGTGGACCGCTG
CAGCCTGCGCGACTTCGCCGACGGCCTCCTGGACGTCACCTGCGGCAGCACGGACGTGACGGTCTCCCGGTGCCGCTTCT
CGGCGCACGACAAGGCCGTGCTGATCGGCGCCAGCAGCGAGCACGTCGGGGACCGGCGCATCCGGGTGACCATCCACCAC
TGCCTCTTCGACGGCACGCGGCAGCGGCAGCCCCGCGTCCGGTTCGGCCGGGTGCACCTCTACAACAACTACACCAGGGG
CTGGGGCATCTACGCCGTCTGCGCCAGCGTGGAGTCGCAGGTGCGGTTCACGCGAAACTGCTCACACGCCGCATGCCATA
AGCGTGTGTAGTGTGTAGTAGTGCTGATCTGCACGCTTGATATGGCTGCAGATTGTCTCCCAGTGCAACATCTACGAGGC
GGGGGAGAAGAAGAAAGTGTTCACGTACATGAGCGAGCAGGTCTCGTATTACATTTACATACACTGGGCCTTACAGATCT
GAATTTCATTTTTTGTAGCTGAAAAGCTTTGGGTTTGTGACTGATGCAGGCGGCGGACAGAGACTGCAGTTCAAGTGGGC
GCATCCGGTCTGAAGGCGACCTGTTCCTGAACGGTGCGCAGGAGTACACGGAAAATGACTCAGAGACTGCAGAAGACAAC
CGGTGGGACTTTGAGGTCCGGGATTGCTACAAGCCGTGGTCGGTGCAGCCCGCGTCGATGGCGCTCAAGGAGCTACTGGA
GTCCTGCACCGGCTGGCAGCCGGTTCCGCTGCCGGAAGACG---TCTGCTTCACAAGAGCACCTGCTGCTG---------
-------------CCACGACATTTGTCTGAAGTATGAACCACTCTGAAAATTTAGAGCACGCGATCCAAATAAATTTACA
CGAATAATAACGAACCGCCGTACTACTA------GTATTATGTTTGACAGATATGAG----CAATAATACGAACGATATC
TGAAGCTCTGAATTCCATAGTCGCTGCAT-TTTCTTGTAACCTAATCTGTGGATCTGATGATTGTCCTGTTGGAACAAGA
TTGCGACGTGACTGAGAATAGATGAACTGACTGTACCACTGATTCTGACCGAATGCACTCGCAGAGATTTCTCACGCGCG
TTGTTTTCCATGCTCGCCG------GAGTTTCGTTACGCAAGTTGTAGATTTTATATCTCCCTTTGGAGGAATCGGTGTC
ACCATCTGCACACAGACTCGTACTACGCCGTTCCATTCCGCTGGCTTGCTTCGGTTTCTTGTCGTGTTGGCCGATCTGTG
TATTCTTTTTTCTTAGAGCATCTTCAACAGCCACGCAACGCCT-GCGCGCAAAAAACGCATTTGCCGCGCGCCGTTCGCC
TGGTTTGGCGCGGCCGGCAGCGCTGGCTCCGGCAGACGCGTCAAAATTGA--GCGC--GCGCGTAGCTCCAACGGCCGCG
CTAAAATGCAGCGCGCGCTAAACATTGCGTACATTTTTTTAAT--AAAA-CGATAAATAAAATTCATAGAT--AGAAAAA
AC--GATACATAGATATTTTACATAGTTCCATAGCATAGATAGATAA--AAA------CTATTAGATAGTGCAACGACAT
AG-ATAAAAACTATTAGATAGTGCAACTACAGCCTACTCCCAGTCGTCG---TC------GTCATCGTCATCGTCGCCAT
CCTCGCTGGTCTGGTCCGAGGTATCGAGCCACATGTCTTCCCAACGATCATCATCAGACGCAAAGGTCGTCTGACCACCA
TTCTCAACGATTTCGCACTGGGATAGCGCCAGGGCCTTCCGCCGACGTCTGTCCAACCGCTCAGCGCGGCGCCTTTGCGT
CTCCTCCTCGCGGCGCCTTGCCCAGTAGGCTTGCTCG
>chr3A_1
AGGGACCAGTGATGTGACAGCTTAGCCGTCCGAATGTAAAGGTGTTGACCTTGGATCTTGTGGTGTAGTGACTTGTGTGG
CAATGATGAAGGGTAGAAAGAGGAGCTAGACAAC---ATGTCATTCCTTGTTGACTGCCTGGCAAGTCCTAGATTTGTCC
TTGCAACTTCTTATTTGTGTAGCGATGTAGTCGGAGGTATAGTGTTACCGGACGACATGGCAACAATGATACCTTGCGAA
AAGTAGGATATACACCCAACAATCTCCCATAACACGCGGGGCTCTGCAGATGCAATGTGTGCATCTCTCATGCGAGGCTC
GCTATCTAAGTCGAGCTCCCAGTTTTTGACTTGTTTGATCGGTTTGTTTAGCATGAACTGGCCATATCTCGTGTGTCAGT
GGAGAGGGATTA--------TTTGTTTGTCATCAATGATTGAGTCGAAGTCATTTGCTCGGGAAGACGTGATGACAATGA
TAGTAGCAGGCAAAACCTCGACAATATTCCTTTCCTTTGTGGCATATGGGTCTATTTGGATAAGCGGGTCGGGCAGGATG
CCCTTTTTTATGGGCGTGATGTATCATTTTAGAAAACTGTT--------------------------TTTAATCTATGGA
CCGAACATTAAGGCTACGGTGTGGAAAAAATTCTAAGTTC---------TTTCTGAGGCAAGGGAAAAATTCCAAGTATT
TATGAGCATTTTCTTAAA---AAAAGGTATTCCAAGTATTTACAGAGGTAGCAGTATTCTTTTTAGCCGTAAAACTGTAT
TTATGAGCATTTCTCCGTTTCAAAATTTACTTCTCTTTGGGCCGACCTGAAACGGCCCCGCGACACAACTCACCAGTGAA
AACGGCCCAGACAATTAAAGTCCGACAGCAAACAGCTGCCGTTCTTTCCCGACCGTGCCTCAACAAATACCGAACCAGCA
TGCTCTCTGTTTGTTCACTCGATCA-------CTGTCCTACGCCATGGCGCCTCCTCAGTCCGACGAGCAGCTCGTCGAC
GATCCTGCCATGGTGGACATTACTCCTCCTCACCCCGACGAGCATTTCGGTGGTGAGCCGGCCGTGGAAGACACCGCCCC
TCCTCGATTCTCCGACGAGCAACAACTCGGGTGCGTGCCGCAAACCACGCTGATGCCGTACGCGGCCGTGGACTCGTCGC
TGCGCGCCATGGCCGGCCAGGCCGAGGGCTTCGGCCGGCACGCCATCGGCGGCCTCCACGGCGACGTCTACCACGTCACC
ACCCTCAATGGTACGCACGGCACCATCTCTCCACCCGTTAATTCTCTGCTGTATCACCATCTGCTGTCATTCTGCCATGG
ATTCATCGTACTGAAGCTGAACGATGTATTATTAAAGACGACGGGCCCGGCTCGCTGCGGGACGGCTGCCGGCGCCAGGA
GCCGCTGTGGATCGTCTTCGACGTGTCCGGCACCATCCGCCTCGCGTCGGGGCTGCGCGTGTCGTCCCACAAGACCGTAG
ACGGCCGCGGGCGGCGCGTCACCCTGTCCGGCAAGGGGCTTCTTCTCCGCGAGTGCGAGCACGTGATCCTGTGCAACCTG
GAGGTGGAGGGCGGGCGCGGGCACGACGCCGACGCCGTCCAGATCAAGCCCGGGTCCAGGCACGTGTGGGTGGACCGCTG
CAGCCTGCGCGACTTCGCCGACGGCCTGCTGGACGTGACCTGCGGCAGCACGGACGTGACCGTCTCCCGGTGCCGCTTCT
CGGCGCACGACAAGGCCGTGCTGATCGGCGCCAGCAGCGGCCACGTCGGGGACCGGCGCATCCGGGTGACCATCCACCAC
TGCCTCTTCGACGGCACGCGGCAGCGGCAGCCCCGCGTCCGGTTCGGCCGGGTGCACCTCTACAACAACTACACCCGGGG
CTGGGGCATCTACGCCGTCTGCGCCAGCGTGGAGTCGCAGGTGCTGTTCACGCCAAACTGCTCATATCCCACATGCCATA
AGCGTGTAGTGT-----GTAGTGCTAATCCGCACGGTTGGTCTGGCTACAGATTGTCTCCCAGTGCAACATCTACGAGGC
AGGGGAGAAGAAGAAAATGTTCACGTACATGAGCGAACAGGTCTCGTATTACATTTA----CACTGGGCCTTACAGATCT
GCATTCCATTTTTTGTAGCTGAAAAGCTTTGGGTTTGTGACTGATGCAGGCGGCGGACAGAGACTGCAGCTCAAGTGGGC
GCATCCGGTCTGAAGGCGACCTGTTCCTGAACGGCGCGCAGGAGTACACCGAAAATGATTTGGAAACTGCAGAAGACGAC
CAGTGGGACTTCGAGGTCCGGGATTGCTACAAGCCGTGGTCGGTCCAGCCCGCGTCGATGGCGCTCAAGGAGCTCCTCGA
GTCCTGCACCAGCTGGCAGCCGGTTCCGCTGCCGGAAGACG---TCTGCTTCACAAGAGCACCTGCTGCTGCTGTTGCTG
CTACGACATCTGTC--------------------TGAACCACTCTGAAATTTTAGAGCACG--ATCCAAATGAATTTACA
CGAACAATAACGAACCACCG---TACTA------GCATTATGTTTGACAGATATGATCAATCAATAACACGAACGATATC
TGAAGCTCTGGATTCCATAGTCGATGCAT-TTTTTTGTGACCAAATCTGTGGATCTGATGATTGTCCTGTTGGAATAAGA
TTGCGACGTGACTCAGAATAGGTGAGCTGACTGTCCCACTGATTCTGATCGAATGCACTCGCGCAGATTTCTCACGCGCG
TTGTTTTCCATGCTCGCCGTCGCTGGAGTTTAGTTACGCAAGTTGTAGATTTAAATCTCCCGTTCGAAGGAATCGGTGTC
ACCATCTGCACACAGGCTCGTACTACGCCGTCCCATTCCGTTGGTTTGCTTCGGTTTCTTGTGGGGTTGGCCGATCTGTG
TATTCTTTTTCTTAGA----------------------------------------------------------------
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>chr3B_799
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-TAGGAGTATTTCTCCGTTTC-AAATTTACTTCTCTTTGGGCCGGCCTGAAACGCCCCCGCGACACAACTCACCAGTGAA
AACGGCCCAGAGAATTAAAGTCCGACAGTAAACAGCAGCCGTTCTTTCCCGAGCGCGCCTCGACAAATACCGAACCAACA
TGTTCTCTGTTGGTTCACTCGATCA-------CTGTCCTACGCCATGGCGCCTCCTCAGTCCGACGAGCAGCTCGTCGAC
GATCCTGCCATGGTGGACATTACTCCTCCTCACCCCGACGAGCATTTCAGTGATGAGCCGGCCGTGGAAGACACAGCCCC
TCCTCGATTCTCCGACGAGCAACAACCCGGCAGCGTGCCGCAAACCACGCTGATGCCGTACGCAGCCGTGGACTCGTCGC
TGCGCGCCATGGCCGGCCAGGCCGAGGGCTTCGGCCGGCACGCCATCGGCGGCCTCCACGGCGACGTCTACCACGTCACC
ACCCTCAATGGTACGCGCGGCACCATCTCTCC----GTCAATTCTCTGC---ACCATCATCTTCTGTCATTCTGCCATGG
ATTCATAGTGCTGAAGCTGAA-GATGTGTTAATTAAGACGACGGGCCCGGGTCGCTGCGCGACGGTTGCCGTCGCCAGGA
GCCGCTGTGGATCGTCTTCGACGTGTCCGGCACCATCCGCCTCGCGTCGGGGCTGCGCGTGTCCTCCCAGAAGACCGTGG
ACGGCCGCGGGCGGCGCGTGACGCTGTCCGGCAAGGGCCTTCTTCTTCGCGAGTGCGAGCACGTGATCCTGTGCAACCTG
GAGGTGGAGGGCGGGCGCGGGCACGACGCCGACGCCGTCCAGATCAAGCCCGGGTCGAGGCACGTGTGGGTGGACCGCTG
CAGCTTGCGCGACTTCGCCGACGGCCTGCTGGACGTGACCTGCGGCAGCACGGACGTGACGGTCTCCCGGTGCCGCTTCT
CGGCGCACGACAAGGCCGTGCTGATCGGCGCCAGCAGCGAGCACGTCGTGGACCGGCGCATCCGGGTGACCATCCACCAC
TGCCTCTTCGACGGCACGCGGCAGCGGCAGCCCCGCGTCCGGTTCGGCCGGGTGCACCTCTACAACAACTACACCAGGGG
CTGGGGCATCTACGCCGTCTGCGCCAGCGTGGAGTCGCAGGTGCGGTTCACGCGAAACTGCTCATACGCCACATGCCATA
GGCGTGTGTAGTGTGTAGTAGTGCTAATCTGTACGCTTGGTATGGCTGCAGATTGTCTCCCAGTGCAACATCTACGAGGC
AGGGGAGAAGAAGAAAGTGTTCACGTACATGAGCGAGCAGGTCTCGTATTACATTTA----CACTGGGCCTTACAGATCT
GCATTTCATTTTTTGTACCTGAAACGCTTTGAGTTTGTGATTCATGCAGGCGGCGGACAGGGACTGCAGTTCAAGTGGGC
GCATCCGGTCTGAAGGCGACCTGTTCCTGAACGGCGCGAAGGAGCACACCGAAAATGATTTGGAAACTGCAGAAGACGGC
CAGTGGGACTTCAAGGTCCGGGATTGCTACAGGCCGTGGTCGGTCCAGCCGGCGTCGATGGCGCTCAAGGAGCTCCTGGA
GTCCTGCACCGGCTGGCAGCCGGTTCCGTTGCCGGAAGACGACGTCTGCTTCACAAGAACGCCAGCTGCTG---------
-------------C--------------------TGAACCACTCTGAAATTTTAGAGCACGCGATGCAAATAAATTTACA
CGAACAATAACGAACCACCG---TACTACTGCTAGTATTATGTTTGACAGATATGATCAAT----AACACGAACGATATC
TGAAGCTCTGAATTCCATAGTCGGTGCATCTTTTTGGCAACCAAATCTGTGGATCTGATGATTTTCCTGTTGGAATTAGA
TTGCGACGTGACTGAGAATAGATGAACTGACTGTACCACTGATTCTGACCGAGTGCACTCGCAGAGATCTCTCACGCGCT
TTGTTTTCCATGCTCGCCG------GGGTTTCGCTTCGCAAGTTGCAGGTTTAAATCTCCCTTGCGAAGTAATCGGTGCC
ACCATCTGCACACAGACTCGTAC---------------------------------------------------------
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>chr6D_2902
TTTTTA--------------------------------------------------------------------------
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--------------AGAGCATCTTCAACAGCCGCGCAACGCGCCGCGCACAAAAAACGCATTTGCCGCGCGCCGTTCGCC
TGGTTTGGCGTGGGCGGCAGCGCTGGCTCCAGCAGCCGCGTCAAAATTGAGCGC----GCGCGTAGCTCCA-CGGCCGCG
CTAAAATGCAGCGCGCGCTAAACATTGCGTACATTTTTTTAAT--AAAA-CGATAA-TAAAATTCGTAGAT--AGAAAAA
AC--GATACATAGATATTTTACATAGTTCCATAGCATAGATAGATAA--AAA------CTACTAGATAGTGCAACGACAT
A--AAAAAAACTACTAGATAGTGCAACTACATCCTACTCCCAGTCGTCG---TC------GTCATCATCATCATCGCCAT
CCTCGCTGGTATGGTCCGAGGTATCGAGCCACATGTCCTCCCAACGATCATCATCAGACGTAAAGATCGTCTGCCCACCA
TTCTCAACGATTTCGCACTGCGATATCGCCAGGGCCTTCCGCCGATGCCTGTCCAACCGCTCCTCGTGGCGCCTTTGCGT
CTCCTCCTCGCGGTGCCTTGCCCAGTAGGCTTGCTCG
>chr2A_2903
TTTCTA--------------------------------------------------------------------------
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-------------TATAGCATCTCCAACAGCCGCGCAACGCGCCGCGCGCTAAAAACTCATTTGCCGCGCGCCCTTTGCC
TGGTTTGGCACGGCCGGCAGTGCTGGCTCCAACAGCCGCGCTAAAATTGAGTGCGC--ACGCGTAGCTCCAGCGGCCGCG
CTAAAATGTAGCGCGCGCTAAACATTGCGTACATCTTTTTATATAAAAA-CTATAAATAAAATTCATACAT--A---AGA
AC--GATACATAGATATTTTACATAGTTCCATAGCATAGATATATTA--AAAAACTAC---------TGTGCAACGACAT
AATAAAAAAAATACTAGACAGTGCAACTACAGCCTACTCCCAGTCGTTATCATC------ATCATCATCATCGTCGTCAT
CCTCGCTGGTCTGGTCTGAGGTATCGAGTCACATGTCCTCCCAATGGTCGTCATCAGACGAAAAGATCGTCTGCCCACCA
TTTTCAGCGATTTCGCACTGCGATAACACCAGGGCCTTCCGCTGACATCTGCCCAACCACTT-GCGGGGCGCTTTGCCGT
CTGCTCCTCGCGGCGCCTTGCCCAGAAGGCTTCCTC-
>chr3D_2906
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-----------CTGAGAGCATTTTCAACAGCCGTGCAACGCGCCGCGCGTTAAAAACTCATTTGCCGTGTCCCTTTCGTC
TGGTTTGGCGCGGCCGGCAGCGCTGGCTCCAGCAGCCGCGCTGAAATTGAGCGCAC--GCGCGTAGCTCCAGCGGCCGCG
CTAAAATGCAGTGCGCGCTAAATATTGCGTACATTTTTTA--ATAAAAA-TGATAAATAAAATTCATAGAT--A---AAA
AC--GACACATAGATATTTTACATAGTTCCATAGCATAGATAGATTA--AAAAACTAC---------GGTGCAGCGAC-T
A--AAAAAAACTACTAGATAGTGCAACTACAGCCTACTCTCAGTCG------TC------ATCATCATCATCATCGCCAT
CCTCGCTGGTCTGGTCCGAGGTATCGAGCCACATGTCCTCCCAACGGTCATCATCAGACGAAAAGATCGTCTGCCCACCA
TTTTGAGCGATTTCGCACTGCGATAACGCCAGGGCCTTCCGTCGATGTCTGTCCAACCGCTCCGCGCGGCGCTTTACCGT
CTGCTCCTCGCGGCGCCTTGCCCAGAAGGCTTCCTCG
>chr7D_2906
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-----------CTTAGAGCATC-TCCACAGGCGCCGAACGCGTCGCGCGCTAAAAACTACTTTGCCGCGCGCCCATCGCC
TGGTTTGGCGCGGCGCGCAGCGCTGGCTCCAGCAGCCGCGCTAAAAAGCA----GC--GCGCGCAGCTCCAGCAGT-GCG
CAAAAATGCAGCGCGCGCTAAACATTGCGTACATTTTTTA--AT----A-CGATAAATAAAATTCATAAAT--A---AAA
AAAAGATACATAGATATTTTACATAGTTCCATAGCATAGATAGATAA--AAAAAACTACTACTAGATAGTGCAACGACA-
--T-AAAAAAATACTAGATAGTGCAACTATAGCCTACTCCCAGTCG------TCGTC---GTCATCGTCATCGTCGCCAT
CCTCGCTTGTCTGGTCCGAGGTATCGATCCACATGTCCAACCAACGGTCATCATCAGCCGAAAAGATCGACTGCCCACCA
TTTTGAACGATGCCGCACTGCGATATCGCCAGAGCCTTTCGCCGACGCCTATCCAACCGCTCGGCGCGGCGCCTTTGCGT
GTCCTCCTCGCGGCGCCTTGCCCAGTAGGCTTGCTCG
>chr2A_2906
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-----------CTTACAGCATTTCCAACAGCCGTGCAACGTGCCGCGTGCTAAAAACTCATTTGTCGCGCGCCGTTCGCC
TGGTTTGGCGCGGCCGGCGGCGCTGGCTCCAGCAGCCACATCAAAATTGAGCGCGC--GCGCGTAGCTCCAGCGGCCGTG
CTAAAATGCAGCATGCG-TAAACATTGCGTACATTTTTTA--A------ATGATAAATAAAATTCATAGATAGAA----A
AC--AATACATAGATATTTTAGATAGTTCCATAGCATAGATAGATAGATAAAAACTAC---------AGTGCAACAACA-
--T---AAAACTACTAGATAGTGCAACTACAGCCTACTCCCAGTCG------TCGTCAC---CATCATCATCATCGCCAT
CCTCGCTGGTCTGGTCCGAGGTATCGAGCCACATGTCCTCCCAACGATCATCATCAGACATAAAGATCGTCTGCCCACCA
TTCTGAACGATATCGCACTGCGATATCGCCAGGGCCTTCCGCCGACGCCTGTCCAACCACTCATCGCGGCGCCTTTGCGT
CTCCTGCTCGTGGCGCCTTGCCCAGTAGGCTTGCTC-
>chr3B_2907
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------------TTAGAGCATCTCCAACAGCCGCGCAACGCGTCGCTCGTTAAAAACTCATTTGTCGCGCGCCCTTCGCC
TGGTTTGATGCGGCCGGCAGCGCTGGCTCCAGCAGCCGCGCTAAAATTGAGCATGC--GCGCGTAGCTCCAGCGGCCGCG
CTAAAATGCAGCACACGCTAAACATTGCGTACATTTTTTTAAT--AAAA-CGATAAATAAAATTCATAGAT--C---AAA
AC--GATACATAGATATTTTACATAGTTCCATAGCATAGATAGATAA--AAAAACTAC---------GGTGCAACGATT-
--TATAAAAAATACTAGATAGTGCAACTACAGCCTACTCCCAATCG------TCGTC---ATCATCATCATCATCGCCAT
CCTCGCTGGTCTGGTCCGAGGTATCGAGCCACATGTCTTCCTAACAGTCATCATTAGCCGAAAAGATCGACTGCCCACCA
TTTTCAACGATTTCGCACTGCGATAACGCCAGGGCCTTCCGCCGACGCCTGTCCAACCGCTCCGCG--GCGCCTTGCCGT
---CTCCTTGCGGCGCCTTGCCCAAAAGGCTTCCTCG
>chr7D_2909
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--------------AGAGCATCTTTAACAGCCGCGCAACGCGCCGTGCGCTAAAAACTCATTTGCCGCGCGCCGTTCGCC
TGGTTTGACGCGGCCGACAGCGCTGGCTCCAGCAGCCGCGTCAAAATTGAGC--ACTAGCGCGTAGCTCCAGCGGCCACG
CTAAAATGCAGCGCGCGCTAAGCATAGCGTACATTTTTAA--A------ACGATAAATAAAATTTATAGATAAA---AAA
AC--GATACATAGATATTTTACATAGTTCCATAACATAGATAGATAA--AAAAACTAC---------GATGCAACGACA-
--T---AAAACTACTAGATAGTGCAACTACAGCTTACTCCCAGTCG------TCGTCAC---CATCATCATCATTGCCAT
CCTCGCTGGTCTGGTCCGAGGTATCAAGCCACATGTCCTCCCAACGATCATCATCAGACGTAAAGATCGTCTGCCCACCA
TTCTGAACGATATCGCACTGCGATATCGCCAGGGCCTTCCGCCGATGCCTGTCCAACCGCTCATCGCGGCGCCTTTGCGT
CTCCTGCTCGCGGCGCCTTGCCCAGTAGGCTTGCTCG
>chr5D_2912
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-----------------GCATCTCCAACAGCCGCGCAACACGTCGCGCGCTAAAAACTCATTTGCCACGCGTCCTTCGGC
TGGTTTGGCACGGCCGGCAGCGCTGGCTCCATCAGCCGCGCAAAAATTGAGC--AC--GCGCGTAGCTCCAGCGGCCACG
CTAAAATGCAGCGTGCGCTAAACATTGCGTACATTTTTTTAAT--AAAAACGATAAACAAAATTCATAGAT--A---AAA
AC--GATACATAGATATTTTACCTAGTTCCATAGCATAGATAAATTA--AAAAACTAC---------GGTGCAACGACA-
--TAAAAAAACTACTAGATAGTGCAACTACAGTCTACTCCCAGTCG------TCGTCGTCATCATCATCATCATCGCCAT
CCTCGCTGGTCTAGTCCGAGGTATCGAGCCACATGTCCTCCCAACGGTCATCATCAGACGAAAAGATCGTCTGCCCATCA
TTTTGAGCGATTTCGCACTGCGATAACGCCAGGGCCTTCCGCCGACGTCTGTCCAACCGCTCCGCGCGGCGCTTTGCCGT
CTGCTCATCGCGGCGCCTTGCCCAGAAGGCTTCCTCG
>SNPs
---------SS--------------S------S----S-S---------------------------------S------
---------S-------S---S---S-S------SSS-----S---S-----------S---S-S-------S-------
------------S-----------S-----------S---S-----------------------------S---------
-S-------S------------------S--S--------SS--------------------------------------
------S--------S--------S----SS--------------S---------------S-SS---SS----------
-SSSSS-SSSS-SSSSSSSS--S---S-------------S--S-----SS-----------------------------
----S-------------S-----------------SS-------S-------S-----------S--------S-----
----SS---S-----------S-S------SSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSS-------------
SS-----SS------S----------------SSS-S-SSSSSSSSSSS-----S-------------S--S--------
-----------SS-----SSS------------------------------S------S-------SS--S-S-SS----
-------------S--------------------------------------------------------------S---
-------------------------------S---------------------S-------------------------S
-----------S-------------SSSSSSS------------------------------------------------
--------------------------------S-----------------S-----------------------------
------------------------------------------------------------------------S--S----
---------------SS---------------------------------------------------------------
---------------------------------------------------------------------S----S-----
------------------------S-------S-----------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
------------------------------------------S-------------------------------------
---------------------------S--------S-------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------S-----S---------
-------------------------S-------------S----------------------------------------
S--------------------------------------------------------SSSS-------------------
-S------------------------------------------------------------------------------
----------------------------------S--------------S--------S-SS--S------------S--
-S---------S--------------------------------S-----------------------------S-----
--------------------------------------------------------------------------------
--------------SSSSSSSSSSSSSSSSSSSS---------------S------------------------------
----S-----------S---SSS---------------------------------S----------S------------
-----------------------S---------S--------S--------------------------------S----
--------------------------------------------------------------------------------
----------------------------------------------------S-SSSSS--S--S-S-------------
-------------------------------S--------S---S-----------------S-S---------------
----------S---------------------S--------S--------------------------------------
------------------------------S----S-----------------------------------S--------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
-S-----------S------------------------------------------------------------------
------------------------------------------------------------S----S-------S------
--------------------S----S------------------------------------------------------
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>forward_390
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--------------------------------------------------GCATGAACTGGTCGGATCCA----------
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>reverse_1355
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--------------------------------------------------------------------------ACACTG
AAGCTGAACGACGT------------------------------------------------------------------
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>forward_526
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--------------------------TTCCTTTCCTCCGTGGCATG----------------------------------
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>reverse_2305
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----------------------------------------------------------------GACTGCAGAAGACAAC
CGGT----------------------------------------------------------------------------
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>forward_1985
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---------------------------------------------GTTCACGCGAAACTGCTCAC---------------
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>reverse_3071
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------------------------------GGCAGACGCGTCAAAATTGA------------------------------
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-------------------------------------
