>input_sequence_50878
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------------------------------------------------ATGCCCGCCCGCCTGCCGCCGCCGCTCCGCCC
GTCCTCCGCGCCGCCGGCTCCCGCCGTCACGCGCACGCTACACGCGATCAACACCTGCACCTCCTCCACCGCGCTCGCGC
CCCTCCGCGGCGCCATCCTCCGCGAACCCGCCCTCCTGCGCTCCACCACCGTCGTCTCCGCCTTCTTCCTCGCCTGCGGC
CGCCTCCGCCACCTCGCCCCCGCGCTCTCCCTCTTCGCCTCCCTCTCCCGCCCCCACGTCTTCCTGTTCAACTCCATCCT
CCGCTCCCTCCGCCCTGCGCCCGGCTGCTCCCCGCTCCCGCTCTTCCGCCGCTTCCTCTGCCTCGGCGGCCGCCCCAACC
GCTACACCTTCCCGCTTCTCCTCACCTCCCTTTCCTCCCTCCGCGACCTGAGGGCCGTGCATTCTCAGGTGGCCAAGTCC
GGCTTCTCGCGCGACCTCCACGTCCGCAACGCCCTCCTCGCGCGTTACGCCGCATGCGACCCATGCCTGGCCCACGCCGA
GCAGCTGTTCGACGAAATGGCCCACCCGGACGTTGTCGCGTGGACCACCATGATCACCTCATACAAGAACCGCGGCCGCA
GCTTCAACGCCCTGGCCACATTCCGGCGGATGCTGTCTGCTTCTGTTGCCCCCAACCGCGTCACCATGGTCGCCGCGCTT
GGTGCATGTGCGGCCCATGGTGCCATCGAAACTGGAACTTGGATCCATGAGTACGTGCAGAAGCAGGAATGGGAGCTGGA
CGTTATATTAGGCACTGCACTTGTTGATATGTATGGGAAGTGTGGACATGTCGTCGACGGGGTTCGTGTATTCTCGGAAA
TGGCCGAGAGGAATGTCTATACCTGGAACTCTATCATTGGAGCGCTTGCTCTTGCACAGGATGGCACAATGGCACTTCAG
TGGTTCTATAGGATGGAGGCTGATGGTGTCCGGCCAGATGCAGTGACGCTCATTTCTGTTCTTTGTGCATGTGCCCATGC
CGGGTTTGTTGACATTGGGAGGAAAATATTTAACCTGATCATACAAGGAAAGTACGGGTTTCAACCTGGAATCAAGCACT
TCGGGTGCTTGGTTGATCTTCTTAGTCGCTCTGGACACCTGGATGATGCTGTTAGTGTTGTTGAGACAATGTCACAGCCA
AATGCAGTCATCTGGGGCTTACTGTTGCGGGGTTGCAAGGCTCATGGTGACTCACGATTGAGTGAGCATGTGATGACAAG
GTTGGTGGAGTTAGAGCCTGATAATGCTTCACATTATGTGCTGTTAGCAAATTTATATGCTGAGACAGGGAGGTGGCAGG
AGGCTGAGGAGATCTTGCAGTGGATGAAGAAGAAAGGATTGAGGAAGGATGCAGGCTGGAGCCTAAGGATGTTAGGAGAC
AGGCTGTTGGCACCGAAATCTGGCAGCACGAAGCCAGTGTTTCCGATCCAAGGATCTTTTGTGCGGTAA-----------
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------------------------------------------------------------------------
>chr3D_1_TraesCS3D01G300800
CTTGTAAAATAAGAGAGAATAGGCATAAGTATTGTGACATAATGTGTAATAACAGCCCATAATGCAATAAATATCGATAT
AAAAGCATGATGCAAAACGGACGTATCACCGGGCAGCGTTATGTGGGATCCTATTTGGCGCGTAGGTCGCCCGATAGCGA
CCACGCATCCCCCCGCTTCCTGCTATGCACATCTAGGCTGGCCAAACCACTCATTTTCGTCCGGTTTTCTTTTTTCTATC
CTTGTTTTTTCTTTTTTCTCCTTTTCTTTTATTTTCTCTCTTTTAGTTTTCGTTTTTTCTTTACCTATTTTTTTCATTTT
CTTTGTTTTTCTTTCCAAATTCAAGAGAATTTTCTGAAATGTGGGAACATTTTTCAAACCGGTGAACATTTTTTGAAATC
TGGGAACACTTTTATTCAGCGGACATTTTCCAAATTGGCAAACATTTTTTGAAAATGAAAATGTGTTCATTGAGTTCAAT
TTTTTTTCATGAATTTTAAGAACATGTTCATCTTATTTGAAAATGTTCATCGAATTCAAAAAAGTTTTTGAATTCAAAAT
TTGTCCATTAAATTCTAGAAAATATCCGTTGAATTTAAATTTTGTTCATCAAATACAAAAAATGTTCTTAAAAAATAAAT
TTTGTTTATCAAAATACAAAAAAATGTTCATAAAATTTTAAAATATGCATTTTCAAAGAATATTTTTCTGAATTCTTGAA
CATTTTTGAAATTTTAAACTTTTTCGAAAACCTGAACTTTTATAAAGAAGCAAAAAAATACAAAAACAAAAAACGAAACG
AAAAATAAAAAACAGGGAGCCCCGCCCCGCACTGGGCCGGGCCAAGATCGCGGGTGGGGAGCGAGGGTGTGCGCGCTGCC
CTCTTTCCCAGCGCGCAGGTCGCGGTATAGGAGGTCCCCTGTCTGACCAGGTTTGACCCCAAGGGCCGGGACTTCAGTTC
GGAC--------GTGCGAGGCGGAAAAACCACCACGCACCCCGCCGTTATGCCCGCCCGCCTGCCGCCGCCGCTCCGCCC
GTCCTCCGCGCCGCCGGCTCCCGCCGTCACGCGCACGCTACACGCGATCAACACCTGCACCTCCTCCACCGCGCTCGCGC
CCCTCCGCGGCGCCATCCTCCGCGAACCCGCCCTCCTGCGCTCCACCACCGTCGTCTCCGCCTTCTTCCTCGCCTGCGGC
CGCCTCCGCCACCTCGCCCCCGCGCTCTCCCTCTTCGCCTCCCTCTCCCGCCCCCACGTCTTCCTGTTCAACTCCATCCT
CCGCTCCCTCCGCCCTGCGCCCGGCTGCTCCCCGCTCCCGCTCTTCCGCCGCTTCCTCTGCCTCGGCGGCCGCCCCAACC
GCTACACCTTCCCGCTTCTCCTCACCTCCCTTTCCTCCCTCCGCGACCTGAGGGCCGTGCATTCTCAGGTGGCCAAGTCC
GGCTTCTCGCGCGACCTCCACGTCCGCAACGCCCTCCTCGCGCGTTACGCCGCATGCGACCCATGCCTGGCCCACGCCGA
GCAGCTGTTCGACGAAATGGCCCACCCGGACGTTGTCGCGTGGACCACCATGATCACCTCATACAAGAACCGCGGCCGCA
GCTTCAACGCCCTGGCCACATTCCGGCGGATGCTGTCTGCTTCTGTTGCCCCCAACCGCGTCACCATGGTCGCCGCGCTT
GGTGCATGTGCGGCCCATGGTGCCATCGAAACTGGAACTTGGATCCATGAGTACGTGCAGAAGCAGGAATGGGAGCTGGA
CGTTATATTAGGCACTGCACTTGTTGATATGTATGGGAAGTGTGGACATGTCGTCGACGGGGTTCGTGTATTCTCGGAAA
TGGCCGAGAGGAATGTCTATACCTGGAACTCTATCATTGGAGCGCTTGCTCTTGCACAGGATGGCACAATGGCACTTCAG
TGGTTCTATAGGATGGAGGCTGATGGTGTCCGGCCAGATGCAGTGACGCTCATTTCTGTTCTTTGTGCATGTGCCCATGC
CGGGTTTGTTGACATTGGGAGGAAAATATTTAACCTGATCATACAAGGAAAGTACGGGTTTCAACCTGGAATCAAGCACT
TCGGGTGCTTGGTTGATCTTCTTAGTCGCTCTGGACACCTGGATGATGCTGTTAGTGTTGTTGAGACAATGTCACAGCCA
AATGCAGTCATCTGGGGCTTACTGTTGCGGGGTTGCAAGGCTCATGGTGACTCACGATTGAGTGAGCATGTGATGACAAG
GTTGGTGGAGTTAGAGCCTGATAATGCTTCACATTATGTGCTGTTAGCAAATTTATATGCTGAGACAGGGAGGTGGCAGG
AGGCTGAGGAGATCTTGCAGTGGATGAAGAAGAAAGGATTGAGGAAGGATGCAGGCTGGAGCCTAAGGATGTTAGGAGAC
AGGCTGTTGGCACCGAAATCTGGCAGCACGAAGCCAGTGTTTCCGATCCAAGGATCTTTTGTGCGGTAACACAGGCCAAA
GAAACGTATTACTGATGAATTATATGTGTTTCATGAGGAACATTGGAGGGTGGATTGATGCTCATTTAGAGAAGCAAGAA
CTTGCTTATCACTCCA-----TGAGGATGAGAACTTGAGACCATGGACATCGATTTGGGAGCAGGAATTTGAGAAACATG
CGGCTGGGATTCCTAAATCATTGTTGAATTGGTGCCAGTGAGACTGGCATTGCTTGGGGCACACATGCTTGGTTTGATGT
GAAAAGGT-----------------TTGTTAGTTACTGCTGATAG-TGTGCATATAGTCATCCATAATAAAGAAATGTTA
ATATTCTGGGAAAGAAGATAAGCCTTTAACTCTTATTTCACAAACCCTTTAGTTCTGAGTTTTCTCGGAAACACACCTCC
TGCAGG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------CTGCAGGTTATGGTCCTTACATGAAAAAAGAAGCAGTACGAACTTTGAACTGTCA
ATCTGAATTGTGCAATGGACTTCTGTTGCTCATTTGTAAAAACAATACATTTGCATCCTTGGCTC--TTGTAATATTGAG
GTTTACAAGGCTGTTTGTCACTCT-AACAAAAATGAGCATTGTTGTAACTTACTGCCATTATTAGTTATAGAGTTTTGCT
TCTTTGAACAAATGCATTTCTAATTGACTATTTCTTCAGTCAAACTAATAACACTTTGACTGG-----------------
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-----------------------------------------------------------CAATACCATTTTAAATGTTTA
GATTGAAAACCTGAAAAATCGTATCTACACATTTGTCTTAAAAAAGGTTTCCAAATTGTTATTATTTTCTTGGTTTTATA
CATATTGTGGAAATTAGTGGTCAAAGTTACAACTTGAAGACCATATGGATTCCCGAAATGTCACTTATTCTGAACTGAAG
GGAGTACTAGTAAACTAGATTTGGTGCAGAAGGAGACACGATTAATATATACTTAATTAAGGGCTTCTGCAAGTTGTGAC
GG-ATGCATCTTGAG-TTAATATTTTAATACTGCCATAAAAGCTAACTATGTGCATCCTCAGTAGCATAAGT
>chr3A_872
CGCGCGCT------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-TCTTTCCCAGCGCGCAGGTCGCGGTATAGGAGGTCCCCTGTCTGATCAGGTTTGACCCCAAGGGCCGGGATTTCTGTTT
GGACGTGCGACGGTGCGAAGCGGAAAAACCACCACGCACCCCGCCGTTATGCCCGCCCGCCTGCCGCCGCCGCTCCGCCC
GTCCTCCGCGCCGCCGGCTCCCACCGTCACGCGCACGCTGCACGCGATCAACACCTGCACCTCCTCCACCGCGCTCGCGC
CCCTCCGCGGCGCCATCCTCCGCGAACCCGCTCTCCTACGCTCCACCACCGTCGTCTCCGCCTTCTTCCTCGCCTGCGGC
CGCCTCCGCCACCTCGCCCCCGCGCTCTCCCTCTTCGCCTCCCTCTCCCGCCCCCACGTCTTCCTGTTCAACTCCATCCT
CCGCTCCCTCCACCCTGCGCCCGGCTGCTCCCCGCTCCCGCTCTTCCGCCGCTTCCTCTGCCTCGGCGGCCGCCCCAACC
GCTACACCTTCCCGCTTCTCCTCACCTCCCTTTCCTCCCTCCGCGACCTGAGGGCCGTGCATTCTCGGGTGGCCAAGTCC
GGCTTCTCGCGCGACCTCCACGTCCGCAACGCCCTCCTCGCGCGTTACGCCGCCTGCGACCCATGCCTGGCCCACGCCGA
GCAGCTGTTCGACGAAATGGCCCAACCGGACGTTGTCGCGTGGACCACCATGATCACCTCATACAAGAATCGCGGCCGCA
GCTTCAACGCCCTCGCCACATTCCGGCGGATGCTGTCTGCTTCTGTTGCCCCCAACCGTGTCACCATGGTCGCCGCGCTT
GGCGCATGTGCGGCCCATGGTGCCATCGAAACTGGAGCTTGGATCCATGAGTACGTGCAGAAGCAGGGATGGGAGCTGGA
CGTTATATTAGGCACTGCACTCGTTGATATGTATGGGAAGTGTGGACATGTCGTCGACGGGGTTCGTGTATTCTCTGAAA
TGGCCGAGAGGAATGTCTATACCTGGAACTCTATCATTGGAGCGCTTGCTCTTGCACAGGATGGCACAATGGCACTTCAG
TGGTTCTATAGGATGGAGGCTGATGGTGTCCGGCCAGATGCAGTGACGCTCATCTCTGTTCTTTGTGCATGTGCCCATGC
CGGGTTTGTTGACATTGGGAGGAAAATATTTAACCTGATCATACAAGGAAAGTACGGGTTTCGACCTGGAATCAAGCACT
TCGGGTGCATGGTTGATATTCTTAGTCGCTCTGGACACCTGGATGATGCTTTTAGTGTCGTTGAGACAATGTCACAGCCA
AATGCAGTCATCTGGGGCTTACTGTTGCGGGGTTGTAAGGCTCATGGTGACTCACGATTGAGTGAGCATGTGATGACAAG
GTTGGTGGAGTTAGAGCCTGAGAATGCTTCACATTATGTGCTGTTATCAAATTTATATGCCGAGACAGGGAGGTGGCAGG
AGGCTGAGGAGATCTTGCAGTGGATGAAGAAGAAAGGATTGAGGAAGGATGCAGGCTGGAGCCTTAGGATGTTAGGAGAC
AGGCCGTTGTCACCGAAATTTGGCAGCACGAAGCCAATGTTTCCGATCCAAGGATCTTTTGTGCGGTAACACAGGCCAAA
GAAACGTATTACTGATGAATTATATGTGTTTCATGAGGAACATTGGAGGGTGGATTGATGTGCATGTAGAGAAGCAAGAA
CTTGCTTATCACTCCAAGTTGTGAGGATGAGAAATTGAGACCATGGACATCGATTTGGGAGCAGGAATTTGAGAAACATG
CGTCTGGGATTCCTAAATCATGGTTGAATTGGTGCCAATGAGACTGGAATTGCTTGGGGCACACATGCTTGGTTCGATGT
GAAAAGGTTTGTTAAGGCTACAGCTTTGTTAGTTACTGCTGATAGTTGTGCATATAGTCATCCATAATAAA----TGTTA
ATATTTGGGGAAAGAAGAAAAGCTTTTAACTCTTATTTCACAAATCCTTTAGTTCTGAGTTTTCTCGGAAACACGCCT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CCTGCAGGTTATGGTCCTTGCACGAAAAAAGAAGCAGCACGACCTTTGAGCTGTCG
ATCTGAATCGTGCAATGGACTTTTGTTGCTCATTTGTAAAAACAATACATTTGCATCCTTGGCTCCATTGTAATATTGAG
GTTTACAAGGCTGCTCGTCACTCT-AACAAAAATGAGCATTGTTGTAACTTACTGCCATTATTAGTTATAGAGTTTTGCT
TCTTTGAACAAAGGCATTTCTAATTGACTATCTCTTCAGTCAAACTAATAAAACTTTGACTAG-----------------
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-----------------------------------------------------------CAATACCATTTTAAATGCTTA
GACTGAAAACCTGAAAAATCGTATCTGCATATTTGTCTTAAAA-AGGTTTCCAATTTATTATTATTTTCTTGGTTTTATA
CATATTGTGGAAATTAGTGGTCAAAGTTACATCTTGAAGACCATGTAGATTTCCGAAATGTTACTTATTCTGAACTG---
-GAGTGCTAGTAAAATAGATTTGGTGCAGGAGACACAATTT----------CCTAATTAAGGGCTTCTGCAATTTGTGAC
GGGATGCATCTTGAGATTAATATTTTAATACTGCCATAAAAGCTAACTATGTGCATCCTCAGTAGCATAAGT
>chr3B_884
--------------------------------------------------------------------------------
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---TTTCCCAGCGCGCAGGTCGCGGTATAGGATGTCCCCTGTCTGACCAGGTTTGACCCCAAGGGCCGGGATTTCAGTTC
GGACGTG--------CGAGGCGGAAAAACCACCGCGCACCCCGCCGTTATGACCGCCCGCCTGCCGCCGCCGCTCCGCCC
GTCCTCCGCGCCGCCGGCTCCCGCCGTCACGCGCACGCTGCACGCGATCAACACCTGCACCTCCTCCACCGCGCTCGCGC
CCCTCCGCGGCGCCATCCTCCGCGAACCCGCCCTCCTACGCTCCACCACCGTCGTCTCCGCCTTCTTCCTCGCCTGCGGC
CGCCTCCGCCACCTCGCCCCCGCGCTCTCCCTCTTCGTCTCCCTCTCCCGCCCCCACGTCTTCCTGTTCAACTCCATCCT
CCGCTCCCTCCACCCTGCGCCCGACTGCTCCCCGCTCCCGCTCTTCCGCCGCTTCCTCTGCCTCGGCGGCCGCCCCAACC
GCTACACCTTCCCGCTTCTTCTCACCTCCCTTTCCTCCCTCAGCGACCTGAGGGCCGTGCATTCTCAGGTGGCCAAGTCC
GGCTTCTCACGCGACCTCCACGTCCGCAACGCCCTTCTCGCGCGTTACGCCGCCTGCGACCCATGCCCGGCCCATGCCGA
GCAGCTGTTCGACGAAATGGCCCACCCGGACGTTGTCGCGTGGACCACCATGATCACCTCATACAAGAATCGCGGCCGCA
GCTTCAACGCCCTGGCCACATTCCGGCGGATGCTGTCTGCTTCTGTTGCCCCCAACCGTGTCACCATGGTCGCCGCGCTT
GGCGCATGTGCGGCTCATGGTGCCATCGACACTGGCACTTGGATCCATGAGTACGTGCAGAAGCAGGGATGGGAGCTGGA
CGTTATATTAGGCACTGCACTCGTTGATATGTATGGGAAGTGTGGACATGTGGTCGACGGGGTTCGTGTATTCTCGGAAA
TGGCCGAGAGGAATGTATATACCTGGAACTCTATCATTGGAGCGCTTGCTCTTGCACAGGATGGCACAATGGCACTTCAG
TGGTTCTATAGGATGGAGGCTGATGGTGTCCGGCCAGATGCAGTGACGCTCATTTCTGTTCTTTGTGCATGTGCCCATGC
CGGGTTTGTTGACATTGGGAGGAAAATATTTAATTTGATCATACAAGGAAAGTATGGGTTTCAACCTGGAATCAAGCACT
TCGGGTGCTTGGTTGATCTTCTTAGTCGCTCTGGACACCTGGATGATGCTGTTAGTGTTGTTGAGACAATGTCACAGCCA
AATGCAGTCATCTGGGGCTTACTGTTGCGGGGTTGCAAGGCTCATGGTGACTCACGATTGAGTGAGCATGTGATGACAAG
GTTGGTGGAGTTAGAGCCTGATAATGCTTCACATTATGTGCTGTTAGCAAATTTATATGCTGAGACAGGGAGGTGGCAGG
AGGCTGAGGAGATCTTGCAGTGGATGAAGAAGAAAGGATTGAGGAAGGATGCAGGCTGGAGCCTAAGGATGTTAGGAGAC
AGGCTGTTGTTACCGAAATCTGGCAGCACGAAGCCAATGTTTCCGATCCAAGGATCTTTTGTGCGGTAACACAGGCCAAA
GAAACGTATTACTGATGAATTATATGTGTTTCATGAGGAACATTGGAGGGTGGATTGATGCACATTTAGAGAAGCAAGAA
CTTGCTTATCACTCCAAGTTGCGAGGACGAGAACTTGAGACCATGGACATCGATTTGGGAGCAGGAATTTGAGAAACATG
CGGCTGGGTCTCCTAAATCATTGTTGAATTGGTGCCAGTGAGACTAGAATTGCTTGGGGCACACATGCTTGGTTTGATGT
GAAAAGGTTTGTTAAG-CTACAACATTGTTAGTTACTGCTGATAG-TGTGCATATAGTCATCCATAATAAAGAAATGCTA
ATATTCAGGGAAAGAAGATAAGCCTTTAACTCTTATTTCACAAATCCTTTAGTTCTGAGTTTTCTCGGAAACACACCTCC
TGCAGGCAGTGGCGGTGCCAGGATTTTAATCATGTGTAGTCAAGTCAATCTTGTGTGGTCAAGATATATGTATTTCTACA
AATTTTGTATTATTTTTTGCATGATTTGTGCTTATATATGATACTTTTTCCACAAAGCCGTGTAGTCATTTGACTACACA
GCCTATACATTGGCTTCGCCACTGCCTGCAGGCTATGGCCCTTGCACGAAAAAAGAAGGAGCACGAACTTTGAACTGTCG
ATCTGAATTGTGCAATGGACTTTTG--------TTGTAAAAATAATACATTTGCATCCTTGGCTC--TTGTAATATTGAG
GTTTACAAGGCTGTTCGCCACTCTTAACAAAAATGAGCATTGTTGTAACTTAATGCCATTATTAGTTATAGAGTTTTGCT
TTTTTCAACAAATGCATTTCTAATTGACTATTTCTTCAGTCAAACTAATAAAAATTTGACTGGCAATATGGTAGGAACTT
GTACCCTACCAGGCCTGGGACGTAAGCAGTAAGGGAAGGAGGGGGCTGGGCGAGGCGATGAGCGGCCGCGCCGGCGGTTG
GGCGCCGTCGCGGGAGAGGATGGTGGCGGCAGCGGCGCAAGGGCAGAGGGCGGCTAGGGTTCCGGCTCCTCTGGGAGCCG
GGCAATAGAGATAATATTCTTATTGCTTAATTCCAAAAAGAGTCTTACAGCCTATATTTATAACCTAGATAACTTGCATA
AGAATTAACCTAAGATAACTTGCATAAGAATTAACCTAAGATAACTTGTGGGCTAAGATGCCCGGTGGGCCTAGCTAAAC
CGGCCATAACACTTCTCCCCGCCTGCACAAACAGCTCGTCCTCGAGTTGTAAGGTGGGGAAGCGCTTGCGGAACTCCTCG
AGGCGATCAGCCAGCGTCCAACACCTTCTCGACAGCTGGGGCGGCCAGGTCAGCAGCGACGGCGTTCTCCGGAATGTAGT
CTGCAACCTCCAGGTAGAAGAGTCGCGGGCAGGCATGGCCGGGCGTGTAGGGCTCGTCGTAGTTGAAGCACAACCCTTGG
CGGCGACGTTCGAGGAGCTCGGCTGGGGTGAGCCGGCGGAACGGGCGTCCCGCGGTCGCGGCGAGGGGTGCCGCAGAAGC
TTGCGCAGTCCGACCCTGCGCGGAATCCGGCCTGGGTCGCGACCTAGCGGTCCGGAATGGTGATTCCTGCTGGATGGCCA
CCGCGCGGCGCTCGAACGCGCGGGCGTAATACATGGCCGTAATACATGGCCGACTGGAGATCCTGGGGTCCCCGAAGCTC
CACGTCCACGCGGATGTGATCCGGAAGGCCACCGACAAAGAGGTCGGCCCGCTGCTGCACCGTCACACCCGACGCATGGC
ATGCCAGGGCCTGGAAACGGTCGGCGTAGTCCTGCACCGTGGAGGTGAAGGGAAGGCGGCCGAGCTCCGCCAGGCGGCTC
CCGCGAACCGGGGGCCCAAAGCGGAGGAGGCAGAGCTCGCGGAAACGATCCCACGGGGGCATGCAGTCCTCATCCTGCTC
GAGGGCGTAGTACCATGTCTGGGCGGCCCCGCGGAGATGGTAGGAAGCCACCCAAGTGCGCTCCGACGCGGGCGTGCGCT
GTCCGCGGAAGAACTGGTCACACTGGTTGAGCCAGTTAAGCGGGTCGTCCGAACCGTCGTAAGTGGCGAAGTTGATCTTC
GCGAACCGGGGCGGCTGCTGGTGTGGCGCGCCATGGCCCACTGCCTCGGCGGTGCGGAGGGCTGATGACGGTGCTCGGTC
CATGGTGGGAAGGCCGGTGTAGTTTCCTGTGGCGCCCGACGCCTCGGGCTGCAACTGGGAACCCGACGGCGGCCGGGCCT
CCGTGTAAGCCGGCGGAGGGGACGTCCCGTGGAGCCAGCCTGGAAGCGGAGACGGTGACGACGGAAAACGGACCTCCTGG
ATCGGGAGTCCGCTCGGCGCGGACCGGCCCAGGCTAGGGTTGGGCGGGGGCGGTGGTGGCACCTGCACGGTGGCCGCCAG
GAGGGACGACGCGGCGGGGAACGGCGCGGTCCAGGCCGACCACTGCGGGCCCTGGGCGGCGGGTGGCGCCGCGAGTGCCG
GCGTCGGCCACTGGGGCCAAGGTGGCGTCGAAGCCGTCGGTGATGGGAGCGCCGGGTATCCCCCGGTGATGGCCGCGGGA
ACGGAGTACCATGGCAGTGCCGGCTGTCTCGCGGGCACGGCCGGGTGGAGCGGCGGGGGCGGCCCGTACGGGCTAGCCAA
GTAGAGGCGGATGCCCTGGACCGCGACGACTAGGTCGTTGAGCACGCCGGCCATGGCCTCCAGCGTAAACTGCTGCGGGA
CGGTCTTGGCCGTAGGCAGTAGGGGAAGGAGGGAGCTGGGCGTGGCGATGAGCGGCCGCGCCGGCGGTTGGGTGCCGTCG
CGGAAGAGGAAGATGGCGGCGGCAGCGCAAGAGGCAGGGGGCGTTGGCAGGCAGCGGCGGCGGTGCTGGTGGTGGCAGCG
GGTTTGGTGGCGGCGAGGACATGGTCGAAACCCGGGTACCTGGAACTTGTACCCTACCAGGCCTGGGACGTAAGCAGTAA
GGGAAGGAGGGGGCTGGGCGAGGCGATGAGTGGCCGCGCCGGCGGTTGGGCGCCGTCGCGAGAGAGGAGGGTGGCGGCAG
CGGCGCAAGGGCAGAGGGCGGCTAGGGTTCCGGCTCCTCTGGGAGCCGGGCAATAGAGATAATATTCTTATTGCTTAATT
CCAAAAAAAGTCTTACAGCCTATATTTATAACCTAGATAACTTGCATAAGAATTAACCTAAGATAACTTGCATAAGAATT
AACCTAAGATAACTTGTGGGCTAAGATGCCCGGTGGGCCTAGCTAAACCGGCCATAACACAATACCATTTTAAATGTTTA
GACTGAAAACCTGAAAAATCGTATCTACATATTTGTCTTAAAAAAGGTTTCCAAATTGTTATTATTTTCTTGGTTTTATA
CATATTGTGGAAATTAGTGGTCAAAGTTACATCTTGAAGACCATGTGGATTTCCGAAATGTCATTTATTCTGAACTGAA-
GGAGTACTAGTAAACTAGATTTGGTGCAGAAGGAGACACAATTAATATATACCTAATTAAGA------------------
-----GCATCTTGAG-TTAATATTTTAATACTGCCATAAAAGCTAACTATGTGCATCCTCAGTAGCATAAGT
>SNPs
-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S----------------------------------------------------------------------S--------
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
---------------------------------------------------------------------S----------
----------------------------------------------------------S---------------------
--S----------------------------------------------------------------S------------
---------------------S----------------------------------------------------------
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---------S--------------------------S-------------------------------------------
-------------------------------------------------------------S------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
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------S-------------------------------------S-----------------------------------
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-------------------------------------------S--S--------------S-----------------S
----------------------S---------------------------------------------------------
---------------S----------------------------------------------------------------
---------------------------------------------------S----------------------------
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--S--------------------------S--------------------------------------------------
-------------------------------S------------S------S---------------------------S
---------------------------------------S------------S-------------------S-------
------------------------------------------------------------------------
>forward_208
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----------------------------ACATCTAGGCTGGCCAAACC--------------------------------
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------------------------------------------------------------------------
>reverse_1080
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---------------------------------------ACACGCGATCAACACCTGC----------------------
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------------------------------------------------------------------------
>forward_225
--------------------------------------------------------------------------------
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---------------------------------------------ACCACTCATTTTCGTCCGGT---------------
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>reverse_1748
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-------------------------------------------------------------------AATGGGAGCTGGA
CGTTATATT-----------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>forward_226
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------ACCACTCATTTTCGTCCGGTT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>reverse_1782
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TGTTGATATGTATGGGAAGTGTGGA----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------
>forward_439
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GCGGACATTTTCCAAATTGGC-----------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>reverse_2410
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------GCACCGAAATCTGGCAGCA----------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>forward_440
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------GCGGACATTTTCCAAATTGGCA----------------------------------------
--------------------------------------------------------------------------------
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>reverse_2437
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------GTGTTTCCGATCCAAGGATCT-----------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>forward_2410
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------TGTTAGGAGAC
AGGCTGTTGG----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------
>reverse_5993
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GTTGTGAC
GGATGCATCTTGA-----------------------------------------------------------
