>input_sequence_50843
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----------------------------------------------------TTCCTCGCAACCTCGATCTAGAAGCACT
CCGCACTCCACA-------GTCTCTACTCCACACGAGCAAGAGTCAACCAAAGCTCATAGCTCCGTTTCCATCGCATTCT
TCTTCCATCCCTCCATCAATCCAAGAACA-C---GCAGACGCCATCAGCATGAGCTGGTCCGACCTGCCAGCCGAGCTCG
TAGCCGGGATCGCCGACAGGATCACCGAGCATGCGGACCTCGCGCGCTTCCGCTCGGTGTGCCCATCTTGGCGCTCGGCC
TCGGCGGAGCACGCCGCCCGCCGCCGCGTCCCTCTGCTCCTCCTGCCCTCCCAGCAAAACTCTCGCGTCAACCGCCGTCT
CTGGTCCCTCGCCGACGACAGCATCACGGAGACCCCTATGCCCGCCGCGTGCGGCCGCTCCTTCCTCTTCGCCTCGCCGC
GCGGCTGGACACTCGCCGTGGCCGACGACTTCACGGCCACGCTGCTGAACCCCTTCACGGGCGCGTCCGAGAGCCTGCCC
GCGTTGCCGCCATCCTTCCACGACGGGTATCAGATGATCCTCCGTGACATGGTCTGGGACCGCTCACCTGACGCCGTCAT
GGTCTCGCAGGGCAAGGGCGCGTTCTTCTGCCGGCTGCAGGGCGACGGCAGGTCGTGGACCCCCGCCGACCTCTCGCCGC
CAGCTCGC------GTCGGCAGCATCACCTACTGCGACGGCACGTTCTACCTCCTTGACAAGCGCGCCAACAAGGTGACG
GCCGTGGACGGCGCGACCTTCGCCGTGGTCGCCGCGATCGAACCGCCAGATCTGGTGATGCCCGACCGCTCGTGGTT---
ACGCGAGTCCACGCTCGTCGTGTCGTCCGCCTCCGAGCTCCTCCTCGTCGTGCAGGGAGGATG-----------------
-CCACCGCTCGAAGGGCCTCTTCAAGGCCTTTCGCGCGGACCGCGGGAGCCTGGCGGCCGGGTGGTCGGAGGTCGCCGAC
GGCGGCATCGGCGACCGCGCCGTGTTCGTGGACCACGCCCGCGGCTTCTGCGTGGAGGCGAACGGGGTGAACGGGGTGCG
GAGGAACTGCGTGTACGTGGCCAGCGCGCACGAGGAGGCCAACGCCAAC------TCCGGGTGGGGCGACTGGGGGAGGT
ACACCGTCTCCATGCTCGACCTCGACGACCTCACCACCCAGAATCTCTCCCACGGCAACCTCTTGAAATGCCTGCACGGT
AGGCAGCGCCCTTCCTGGTCGATGCCAAATCTGCATTGATCTTCCTCCTCCAAACGAAAAAAACTACGTGTGCGAGTTGA
TCGCATTGAG----GTTGGTTGCAGTAATAAGCAGAGCTGCCAGTTCGTGTAC---------------------------
-------------TATTCTAGTTTTAACTTGCGCTACTTTGTCAGACTTGTTTTATTCATTCTACGACAAGTGAAAGATC
TAGCTTCAGTTACAAGAACGAATTTGATTATCAAATGTGTCACCGTGTTCCTAACAAA----------------------
--------------------------------------------------------------------------------
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-------------------------------------------------GTACAGTACCAGCCTTTGTATCAG-------
--------------------------------------------------------------------------------
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----------------------------------------------------
>chr1D_1_TraesCS1D01G285600
TTTTTTTTGCTAGCAGTTCGTGGCAAATTTTTTTTCTCGAATATGCACGAGCGTGCATATTATATACTCCCTCCGTTCTT
AAATATTTGTCTTTTTAGAGGTTTCAAATGATGACTACATACGGAACAAAATGAGTGAATCTACACTCCAAAATATGTCT
ATATACATCCGTATGTGATGACCATTTGAAATCTCTAGAAAGACAAATATTTAGGAACGGAGGGAGTATTAAAGAAGAAA
GACAAATGCGTCCACCATGTTTTACAAGATCTCCGTTATAATTATCCTTCCCTACGCGCACACCTTTCTAAGCTACCAAA
GAAGGATTCAACATCCCCTTCGTGGCAAATTTTCAGCTCAGAAAAAAAAATAACATGAATCAAAAATAGTGGCGGAGCTT
GACCAAACTCTTTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCATTGG
AGGGTAGAGAAACACAACGATTTTCTTTAAAAG-ACACACCCGATGATTTGCATGTCTTTCTAGGCACGAATTCCGACGA
TTGAAAAAAAAGGTGGA----T-TATGCACGGTAGATATTTGTATTAGCGCTCAATATAGTAAAGCTCGTGGGCCTGGTG
GTTTAGCTTAAGAATAATCAAACC------AAAGAGGACCAGGGAGCAAATCTTCCTCGCAACCTCGATCTAGAAGCACT
CCGCACTCCACA-------GTCTCTACTCCACACGAGCAAGAGTCAACCAAAGCTCATAGCTCCGTTTCCATCGCATTCT
TCTTCCATCCCTCCATCAATCCAAGAACA-C---GCAGACGCCATCAGCATGAGCTGGTCCGACCTGCCAGCCGAGCTCG
TAGCCGGGATCGCCGACAGGATCACCGAGCATGCGGACCTCGCGCGCTTCCGCTCGGTGTGCCCATCTTGGCGCTCGGCC
TCGGCGGAGCACGCCGCCCGCCGCCGCGTCCCTCTGCTCCTCCTGCCCTCCCAGCAAAACTCTCGCGTCAACCGCCGTCT
CTGGTCCCTCGCCGACGACAGCATCACGGAGACCCCTATGCCCGCCGCGTGCGGCCGCTCCTTCCTCTTCGCCTCGCCGC
GCGGCTGGACACTCGCCGTGGCCGACGACTTCACGGCCACGCTGCTGAACCCCTTCACGGGCGCGTCCGAGAGCCTGCCC
GCGTTGCCGCCATCCTTCCACGACGGGTATCAGATGATCCTCCGTGACATGGTCTGGGACCGCTCACCTGACGCCGTCAT
GGTCTCGCAGGGCAAGGGCGCGTTCTTCTGCCGGCTGCAGGGCGACGGCAGGTCGTGGACCCCCGCCGACCTCTCGCCGC
CAGCTCGC------GTCGGCAGCATCACCTACTGCGACGGCACGTTCTACCTCCTTGACAAGCGCGCCAACAAGGTGACG
GCCGTGGACGGCGCGACCTTCGCCGTGGTCGCCGCGATCGAACCGCCAGATCTGGTGATGCCCGACCGCTCGTGGTT---
ACGCGAGTCCACGCTCGTCGTGTCGTCCGCCTCCGAGCTCCTCCTCGTCGTGCAGGGAGGATG-----------------
-CCACCGCTCGAAGGGCCTCTTCAAGGCCTTTCGCGCGGACCGCGGGAGCCTGGCGGCCGGGTGGTCGGAGGTCGCCGAC
GGCGGCATCGGCGACCGCGCCGTGTTCGTGGACCACGCCCGCGGCTTCTGCGTGGAGGCGAACGGGGTGAACGGGGTGCG
GAGGAACTGCGTGTACGTGGCCAGCGCGCACGAGGAGGCCAACGCCAAC------TCCGGGTGGGGCGACTGGGGGAGGT
ACACCGTCTCCATGCTCGACCTCGACGACCTCACCACCCAGAATCTCTCCCACGGCAACCTCTTGAAATGCCTGCACGGT
AGGCAGCGCCCTTCCTGGTCGATGCCAAATCTGCATTGATCTTCCTCCTCCAAACGAAAAAAACTACGTGTGCGAGTTGA
TCGCATTGAG----GTTGGTTGCAGTAATAAGCAGAGCTGCCAGTTCGTGTAC---------------------------
-------------TATTCTAGTTTTAACTTGCGCTACTTTGTCAGACTTGTTTTATTCATTCTACGACAAGTGAAAGATC
TAGCTTCAGTTACAAGAACGAATTTGATTATCAAATGTGTCACCGTGTTCCTAACAAA----------------------
--------------------------------------------------------------------------------
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-------------------------------------------------GTACAGTACCAGCCTTTGTATCAGTGTATGT
ATGTTTCTCTTCATGCTCTGCCTTTTCACGGCCGACGTGCAGCCTGATTGACGA--TTGTTCTGATCGCCTGATCTGCAA
CACGATGCGCCGTGCGCTGCGTTGTCGAGACTACATACGTTTTGAGAGGTGTGCATCGAGTTCCAAATTGGCATGGCATC
GTCGCCTCAGGTGTATTCTGTAAGCAATTTTGTGCGGCTTCTGAATTTTGACAAAGGAAACAAATATCTGGATGCCAACA
ATGCAAGCACAACCAGTGAAGACGAGCTCAAGCAATCACTCGGTGAGCACCACTACGGACGAACCAGGAATCTTGGTAGA
GAGGGGCCAATATAAGAGGTAAAATGTTGGAGGGGCCCAAATATATAACTCTTGAGCATCTTCGGCTAACAACACAGGGG
TGTTCAAAA---AAAAACTACACTGTGGTGTTTTCAATACGAGGCCGCG-------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CCTGGCTCTGTCCTTGA
GCCCACCAAACCAAATTCCCTTTGTGCCACCACCCCACTTACTAACCAGCAAATATATATGTGCCGTCCGCACAACACTC
CACCACCACGACCTGATTCTCTAATTTCTGGGAGCAGAAACGGCTGATGGCGAACGCTTCAGCGGCTGAGGATTGGGAGG
CGGTGCACCGGTGATATAGCCCACGAGGCCGCGCCTGTGCCCATGCCTGCGACGAATCCATTGGGCCTCAGTCATGGCCT
CTAAGAAGCTCGAGGATGAGCCTGCGAACGATGGTGGTGGCCTCCTCCACGGAGTTGAGCACCATGTGGTCCAGCCCATT
GACATAGTCAAATCTGAGCTATGTCATGACACGGCCATGGAGGTGCGTGCATAGCCCTCGGCGCTTGGGAATGAATTGTG
TAATGAGGACAAAAAATGACGTTGTCGATGGCTGGAGCTAGGAACGGAGACGGATCTTGTGGCGCAGATGAGGCAGAGCA
AGAGGGGGATAAAAGAGAGGAGTCAATTACACCGATGGCTGGATCTTTGCGC
>chr1B_793
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------------------------------------------------------------------------GCCATCGG
AAAGTAGAGAAACCCAATGATTTTATTTAAAAAAACACACCCAATGATTTGCATGTCTTTCTAGGCACGAATTCCGACGC
TTGAAAAAAAAAAGAGGTGAGTCTATGCACGGTAGATATTTGTATGAGCGGTCAATATAATAAAGCTCGTGGGCCTCGTG
GTTTAGCTTAAGAATAAACAAAGCAAAGAGAAAGAGGATCAGGGAGCAA-TCTTCCTCACGACCTCGATCTAGAAGCACT
CCACGCTCCACAGTACTCTGTCTCTACTCCACACGAGCAAAAGTCAACCAAAGCTCATAGCTCCGTTTCCATCGCATTCT
TCTTCCATCCCTCCATCAATCCAAGAACCTA---GCAGACGCCATCAGCATGAGCTGGTCCGACCTGCCAGCCGAGCTCG
TAGCCGGGATCGCCGACAGGATAACCGAGCATGTGGACCTCGCGCGCTTCCGCTCGGTTTGCCCATCTTGGCGCTCGGCC
TCGGTGGAGCACGCCGCCCGCCGCCGCGTGCCCCTGCTTCTCCTGCCCTCCCAGCAGAACTCCCGCGTCAACCGCAGTCT
CTGGTCCCTCGCCGACGACAGCATCACGGAGATCCCGATGCCCGCAGCGTGCGGCCGCTCCTTCCTCTTCGCCTCGCCGC
GCGGCTGGACGCTCGCCGTGGCCGACGACTTCTCGGCCACGCTGCTGCACCCCTTCACGGGCGCGTCGGAGAGCCTGCCC
GCGTTGCCGCCATCCTTCCACGACGGGTATCAGATGATCCTCCGTGACATGGTCTGGGACCGGTCGCCTGACGCCGTCAT
GGTCTCGCAGGGCAAGGGCGCGTTCTTCTGCCGGCTGCAGGGCGACGGCAGGTCGTGGACCCCCGCCGACCTCTCGCCGC
CAGCTCGC------GTCGGCAGCATCACCTACTGCGACGGCGCGTTCTACCTCCTTGACAAGCGCGCCAACAAGGTGACG
GCCGTGGACGGCGCGACCTTCGCCGTGGCCGCCGCGATCGAGCCGCCAGATCTGGCGATGCCCGACCGCTCGTGGG---C
ACGCGAGTCCACGCTCGTCGTGTCGTCCGCCTCCGAGCTCCTCCTCGTGGTGCACGGAGGATG-----------------
-CCACCGCTCGAAGGGCCTCTTCAAGGCCTTTCACGCGGACCGCGGGAGCCTGGTGGCCGGGTGGTCGGAGGTCGCCGGC
GGCGGCCTCGGCGACCGCGCCGTGTTCGTGGACCACGCCCGCGGCTTCTGCGTGGAGGCGAACGGGGTCAACGGGGTGCG
GAGGAACTGCGTGTACGTGGCCAGCGCGCACGAGGAGGCCAACGCCAACGCCAACTCCGGGTGGGGCGACTGGGGGAGGT
ACACCGTCTCCATGCTCGACCTCGACGGCCTCACCACCCAGAATCTCTCCCACGGCAACCTCTTGAAATGCCTGCACGGT
AGGCAGCGCCCTTCCTGGTCGATGCCAAATCTGCATTGATCTTACTCCTCCAAACGAAACA----ACGTGTGCGAGTTGA
TCGCATTGAGGTCGGTTGGTTGCAGTAATAAGCAGAGCTGCCAGTTCGTGTAC---------------------------
-------------T--------------------------------------------ATTCTACGAGAAGTGAAAGATC
TAGCTTCAGTTACAA----GAATTTGATTATCAAATGTGTCACCGTGTTCAGAACAAA----------------------
--------------------------------------------------------------------------------
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-------------------------------------------------GTACAGTACCAGCCTTTGTATCAGTGTATGT
----TTCTCTTCATGCTCTGCCTTTTCACGGCCGACGTGCAGCCTGATTGACGATCTTGTTCTGATCGCCTGATCTGCAA
CACGATGCGTCATGCGCTGCATTGTCGAGACTACATACGTTTTGAGAGGTGTGCATCGAGTTTCAAATTGGCATGGCATC
GTCGCCTCAGGTGTATTCTGTAAGCAATTTTGTGCGGCTTCTGAATTTTGACAAAGGAAACAAATATGTGGATGCCAACA
ATGCAAGCGCAACCAGTGAAGACGAGCTCAAGCAATCACTCGGTGAGCACCACTACGGACGAACCAGGAATCTTGGTAGA
GAGGGGCCAATATAAGAGGTAAAATGTTGGAGGGGCCCAAATATATAAATCTTGAGCATCTTCGGCTAACAACACAGGGG
TGTTCAAAAAAAAAAAACTACATAGTGGTGTTTTCAATACGAGACTGGTTAGGTCTCAGTCGATTAAGACTTAGCCAAAT
CTCAAATGAATCTCCATGCAAAATCAAAAGAATATAACATCTGAGACATAACGAAACTCAGTTAGCAAAATTGTTCCAAT
ATATACCATGGGTGGGTGGGTGGGGATGGGGGGGGGGGGAGGCATGGCCCCTGCTCGCCCGCCCCTGGCTCTGTCCTTGA
GCCCACCAAACCAAATTCCCTTTGTGCCACCACCCCACTTACTAACCAGCAAATATACATGTGTCGTCCGCACAACACTC
CACCACCACGACCTGATTCTCTAATTGCTAGGA-----------------------------------------------
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----------------------------------------------------
>chr1A_886
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------AAAGAGGTGGA----TCTATGCACGGTAGATATTTGTATTAGCGCTCAATATAGTAAAGCTCGTGGGCCTCGTG
GTTTAGCTTAAGAATAATCAAACGAAAGAGAAAGAGGATCAGGGAGCAA-TCTTCCTCACAACCTCGATCTAGAATTACT
CCGCACTCCACAGTACTCAG--TCTACTCCACACGAGCAAAAGTCAACCAAAGCTCATAGCTCCGTTTCCATCGCATTCC
TCTTCGATCCCTCCATCAATCCAAGAACA-C---GCAGACGCGAACACCATGAGCTGGTCCGACCTGCCAGCCGAGCTCG
TAGCCGGGATCGCCGACAGGATCACCGAGCATGCGGACCTCGCGCGCTTCCGCTCGGTGTGCCCTTCTTGGCGCTCGGCC
TCGGCGGAGCACGCCGCCCGCCGCCGCGTGCCCCTGCTCCTCCTGCCCTCCCAGCAGAACTCCCGCGTCAACCGCCGTCT
CTGGTCCCTCGCCGACGACAGCATCACGGAGATCCCCATGCCCGCAGCGTGCGGCCGCTCCTTCCTCTTCGCCTCGCCGC
GCGGCTGGACGCTCGCCGTGGCCGACGACTTCTCGGCCACGCTGCTGCACCCCTTCACGGGCGCGTCGGAGAGCCTGCCC
GCGTTGCCGCCATCCTTCCACGACGGGTATCAGATGATCCTCCGTGACATGGTCTGGGACCGGTCGCCTGACGCCGTCAT
GGTCTCGCAGGGTAAGGGCGCGTTCTTCTGCCGGCTGCAGGGCGACGGCAGGTCGTGGACCCCCGCCGACCTCTCGCCGC
CAGCTCGC------GTCGGCAGCATCACCTACTGCGACGGCGCTTTCTACGTCCTCGACAAGCGCGCCAACAAGGTAACG
GCCGTGGACGGCGCGACCTTCGCCGTGGTCGCCGCGATCGAGCCGCCAGATCTGGTGATGCCCGACCGCTCGTGGATG--
-CGCGAGTCCACGCTCGTCGTGTCGTCCGCTTCCGAGCTCCTCCTCGTCGTGCACGGAGGATG-----------------
-CCACCGCTCGAAGGGCCTCTTCAAGGCCTTTCGCGCGGACCGCGGGAGCCTGGCGGCCGGGTGGTCGGAGGTCGGCGGC
GGCGGGCTCGGCGACCGCGCCGTGTTCGTGGACCACGTCCGCGGCTTCTGCGTGGAGGCGAACGGGGTGAACGGGGTGCG
GAGGAACTGCGTGTACGTGGCCAGCGCGCACGAGGAGGCCAACGCCAAC------TCCGGGTGGGGCGACTGGGGGAGGT
ATACCGTCTCCATGCTCGACCTCGACGGCCTCACCACGTC------------------CCTCTTGAAATGCCTGCACGGT
AGGCAGCGCCCTTCCTGGTCGATGCCAAATCTGCATTGACCTTGCTCCTCCAAACGAAAAAAACTACGTGTGCGAGTTGA
TCGCATTGAG----GTTGGTTGCAGTAATAAGCAGAGCTGCCAGTTCGTCTACTATTCTAGTTTTAACTTGCGCTACTTT
GTCGGGCTTGTTTT--------------------------------------------ATTCTACGAGAAGTGAAAGATC
TAGCTTCAGTTACGA----GAATTTGATTATCAAATGTGTCACCGTGTTCCTAAGGGCATGCCCAACGCTACAGGCTGGA
CGGATGCCTCAGCTCTCCACGTCGGCTCGGGTGGTCCTCGATTGCTGTTCGTGCTACTTGCAGGCTAAGGCTGGTCATAG
TGGGGAGTAACTTAGACTAGTAACATACATATGTTACTAGTCTATGTTACTACCTTCATAGTGGGTAGTGTCATAGGTGT
GGTAACATAGTTGCCTTCATTTATTACTTTGTAGACTCATTATGCATTGGAAACCGCTATGTGATGGTAACATATTATGT
TACTCTATTTGCCTCTCTCCTCATTAACTACTTGCCACATCATCATTTTTGCTTATGTGGCATCTATGTTACTACCTATG
TTACTTCCACTATGACCAGTCTAAAGGGGGATCTGCAGAGGAGGCCGTCTCCTTCCTGCCAAAAGTGGAGCGAGGCAAAA
AAAGAAGAGAGGAAGCTGAAGAAAGCGTGGGGCTGAGATCTGGTAAAGCAGGAGAGAGAAATATGAATAGTAAAAAAGTT
GGCCTGCTGAGGCTAGTGCTGCGTTGGGCAGTAGATTTTTGGACGGTGGTTTCCCTGCTAATTTTCTACGTGGCAATGGT
GAGGCATTAGGTAGGTAGTGCTTCCATTGTACATGCCCTAACAAAGTACGTACAGTACCAGCCTTTGTATCAGTGTATGT
ATGTTTCTCTTCATGCTCTGCCTTTTCACGGCCGACGTGCAGCCTGATTGACGA--TTGTTCTGATCGCCTGATCTGCAA
CACGATGCGCCGCGCGCTGCGTTGTCGAGACTACATACGTTTTGAGAGGTGTGCATCGAGTTTCAAATTGGCATGGCATC
GTCGCCTCAGGTGTATTCTGTAAGCAATTTTGTGCGGCTTCTGAATTTTGACAAAGGAAACAAATATGTGGATGCCAACA
ATGCAAGCGCAACCAGTGAAGACGAGCTCAAGCAATCACTCGGTGAGCACCACTACGGACGAACCAGGAATCTTGGTAGA
GAGGGGCCAATATAAGAGGTAAAATGTTGGAAGGGCCCAAATATATAAATCTGGAGCATCTTCGGCTAACAACGAAGGGG
TGTTCAAAAAATATATA--------TGGTGTTTTCAATACGA--------------------------------------
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>chr3D_1102
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TCTTCCATTCCTCGATCAATCCAAGAAGAGA-----AGACGCCAACACTATGAGCTGGCCCGACCTGCCGGCCGAGCTCA
TCGCGGGGATCGCCTACAGGATCACCTCGCACGCGGACCTCGCACGCTTCCGCTCGGTGTGCCCGTCATGGCGCTCCGCC
TCTGCAGAGCACGCCGCCTGTCGCCGCGTCCCGCTACTTCTCCTGCACACCGAAGACCACTTCGGCGTCAACCGCCGTCT
CTGGTCCCTCGCTGACGACACCGTCGTGGAGGTCCCCGTCCCCGCCGTGCGCGTCTTCTCCTTCCTCTACGCCTCGCATC
ATGGCTGGATGCTCGGCGTTGCCGACGACCTCTCGGCCACGCTGCTGCATCCCTTCACCAGTGCGTCCGAGAGCCTACCC
GCACTGCCGCCCTCCTTCCGGGACAACGGTCAGGAGATCCTCTGTGACATGGTATGGGATAAATCGCCTGACGCCGTCAT
GGTCTCGCCGGGAATGGGCGCGTACTTCTGCCGGCTACGGCCCGGCGACGGACCGTGGAGCCCGGTCGGCGGCTGCTCGC
AGGGCGCTAACCATGTCAGCAGCATCACCTACTGCGACGGCACGGTCTACCTTCTGGACGGGCGCGCCCACAGGGTGACG
ACCGTGGACGCTGAAACCTTCGACGTTGCCGCCGTGATCGAGCCACCGGACATGGCCGCGCCACCCCACACCTGGCTCGA
ACCCGAGTCCGCCCTCATCGTCTCGTCCGG---GGAGCTGCTTCTGATCGTCAGGACGCACCTCATGTTCGAACCATTCT
TCCACGGCTCGGACTGCCTCTTCAAAGCCTTCCGCGCGGACGGCCGGAGCCCGGCGGCCGCGTGGTCGGAGATCGCCGG-
GGCGACATCGGCGAGCGCGCCGTGTTCGTGGACCACCTCCGATGGTTCTGCATCGAGGCCAACGGGGTCAACGGGGTGCG
GCGGAACTGCATCTACGTGGCCAGCTCGTACGAGGAGTTCACCGATGAG------TACCTGGTGGACGGCTACGGGAGCT
ACACCGTGTCCGTGCTCGACTTGGACGACCTCACTACCCAG---------------------------------------
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>chr1A_1105
--------------------------------------------------------------------------------
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---TCCAACCCTCCATCAATCCAAGAAGCTC---GCAGGCGGCAACACTATGAGCTGGTCCGACCTGCCAGCCGAGCTCG
TTGCCGGGATCGCCGACAGGATCACCGAGCATGTGGACCTCGCGCGCTTCCGCTCGGTGTGCCCATCTTGGCGCTCGGCC
TCGGCGGAGCACGCCGCGCGCCGCCGCGCCCCCCTGCTCCTCCTGCCCTCCCAGAGCTACTCCCGCGCCGACCGCCGTCT
CTGGTCCCCCGCCGACGACAGCATCAAGGAGACCCCCATGCCCGCCGCGTGCGGCCGCTCCTTCCTTTTCGCCTCGCCCC
GCGGCTGGACGCTCGGCGTGGCCAACGACCTCTCGGCCACGCTGCTGCAACCATTCACCGGCGCGTCGGAGAGCCTGCCC
GCGCTGCCGCCTTTCTTCCACGGCGAATATGAGAAGATCCTCCGTGACATGGTATGGGATCGGTCCCCTGGCGCCGTCAT
GATCTCGCCGGGCAAAGGCGTGTTCTTCTGCAAGCTGCCGGGCGACGGCGGGTCATGGAGCGCCGCCGGATCCTCGCAAA
CGGCTGCC------GTCAGCAGCATCACCTACGACGACGGTACGTTTTACCTTCTGGACGGGCGAGCCCGCAGGGTCACG
GCCGTGGACGCCGCAACTTTCGCCGTGACCGCCGTAGTCGAGCCACCAGATCTGGTGTCGCCCAGACACGCTTGGTGCAC
ACCCGAGTCCACGCTCGTCGTGTCCTCCGG---CGAGCTGCTCCTCATCGTCAGGACGCACCTCTTGTTCCAAGTAGCAC
CATACGGCTCGGGGGGCCTCTTCAAGGTCTTCCGCGCGGACAGCCGGGGCCTGGCGGCCGGATGGTCGGAGGTCGCCGGC
GGCGGCATCGGCAACCGCGCGCTGTTCGTGGACCATCTCCGCGGCTTCTGCGTGGAGGCCGGCGGGCTCAACGGGGTGCG
GAGGAACTGCGTGTACGTGGCCAGCTCGCACGAGATGGTGAACGACGAC------TACGGGCTGGACGTCTATGGGAGGT
ACACCGTCTCGGTGCTCGACCTCGACGACCTCACCACCCAGGATCTCTCGTACGGGAACCTGTTGAAGTGCATG------
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----------------------------------------------------
>chr1B_1105
TCCTC---------------------------------------------------------------------------
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---------CCTTCATCAATCCAAGAACA-C---GCAGACGCCAACGACATGAGCTGGTCCGACCTGCCAGCCGAGCTCG
TAGCCGGGATCGCCGACAGGATCACGGAGCACGTGGACCTCGCGCGCTTCCGCTCGGTTTGCCCATCTTGGCGCTCGGCC
TCGGCGGAGCACGCCGCACGCCGCCGCACCCCCCTGGTCCTCCTGCCCTCCCAGAGCTACTCCCGCGTCGACCGCCGTCT
CTGGTCACCCGCCAACGACAGCATCACGGAGACCCCCATGCCCGCCGCGTGCGGTCGCTCCTTCCTTTTCGCCTCGCCTC
GTGGCTGGACCCTCGGCGTGGCCAACGACCTCTCGGCCACGCTGCTGCAACCATTCACCGGCGCGTCGGAGAGCCTGCCC
GCACTGCCGCCATCCTTCCACGGCGAATATGAGAAGATCCTCCGTGACATGGTATGGGATCGGTCCCCTGGCGCCGTCAT
GATCTCGCCGGGCAAAGGCGCGTTCTTCTGCAAGCTGCCGGGCGACGGCGGGTCATGGAGCGCCGCCGGATCCTCGCAAA
CGGCTGCC------GTCAGCAGCATCACCTACGATGACGGTACGTTTTACCTTCTGGACGGGCGAGCCCGCAGGGTCACG
GCCGTGGACGCCGCAACTTTCGCCGTGACCGCCGTAGTCGAGCCACCAGATCTGGTGTCGCCCAGACATGCTTGGTGCAC
ACCCGAGTCCACGCTCGTCGTGTCCTCCGG---CGAGCTGCTCCTCATCGTCAGGACAGCCGG------------AGCAC
CATACGGCTCGGGGGGCCTCTTCAAGGTCTTCCGCGCGGACAGCCGGAGCCTGGCGGCCGGATGGTCGGAGGTCGCCGGC
GGCGGCATCGGCAACCGCGCCCTGTTCGTGGACCATCTGCGCGGCTTCTGCGTGGAGGTCAGCGGGCTCAACGGGGTGCG
GAGGAACTGCGTGTACGTGGCCAGCTCGCACGAGATGGTGAACGACGAC------TACGGGCTGGACGTTTATGGGAGGT
ACACCGTCTCGGTGCTCGACCTCGACGACCTTTCCACCCAGGATCTCTCATACGGGAACCTGTTGAAGTGCATG------
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----------------------------------------------------
>chr1D_1114
--------------------------------------------------------------------------------
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------------CCATCAATCCAAGAAGCTAGTAGCAGGCGGCAACACTATGAGCTGGTCCGACCTGCCAGCCGAGCTCG
TTGCCGGGATCGCGGACAGGATCACCGAGCATGCGGACCTCGCGCGCTTCCGGTCGGTGTGCCCATCTTGGCGCTCGGCC
TCGGCGGAGCACGCCGCGCGCCGCCGCACCCCCCTGCTCCTCCTGCCCTCCCAGAGCTACTCCCGCGTCGACCGCTGTCT
CTGGTCCCCCGCCGACGACAGCATCAAGGAGACCCCCATGCCCGCCGCGTGCGGCCGCTCCTTCCTCTTCGCCTCGCCTC
GCGGCTGGACGCTCGGCGTGGCCAACGACCTCTCGGCCACGCTGCTGCAACCATTCACCGGCGCGTCGGAGAGCCTGCCC
GCGCTGCCGCCATCCTTCCACGACGAATATGAGAAGATCCTCCGTGACATGGTATGGGATCGGTCCCCTGACGCCGTCAT
GATCTCGGCGGGCAAGGGCGCGTTCTTCTGCAAGCTGCCGGGCGACGGCGGGTCATGGAGCGCCGCCGGATCCTCGCAAA
CGGCTGCC------GTCAGCAGCATCACCTACGACGACGGTACGTTTTACCTTCTGGACGGGCCAGCCCGCAGTGTCACG
GCCGTGGACGCCGCAACTTTCGCCGTGACCGCCGTAGCCGAGCCACCAGATCTGGTGTCGCCCAGACACTCTTGGTGCAC
ACCCGAGTCCACGCTCGTCGTGTCCTCCGG---CGAGCTGCTCCTCATCGTCAGGACGCACCTCTTGTTCCAAGTAGCAC
CATACGGCTCGGGGGGCCTCTTCAAGGTCTTCCGCACGGACAACCGGAGCCTGGCGGCCGGATGGTCGGAGGTCGCCGGC
GGCGGCATCGGCAACCGCGCCCTGTTCGTGGACCATCTCCGCGGCTTCTGCGTGGAGGCCAACGTGG-------------
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----------------------------------------------------
>SNPs
-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--
-SS----------S---S------S-------S---------S------------------------------------S
----------------------------------------------------------------------------S---
--------------------------------------S----------S--------S---------------------
----------------------------------------S---------------------------------------
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--------------------------------------------------------------------------------
--------------------------------S-----------------------S-----S-----------------
------------------------------------S-------------------------------------------
----------S---------------------S--------------S--------------------------------
--------------------------------------------------------------S--S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
--------------------------------------------------------------------------------
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S------------
---------------SSSS-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------S-----------------
-------------------------------------------------------------------S------------
--------S-----------------------------------------------------------------------
------------------------------------------------S-------------------------------
----------------------SS-------------------S-S-SS-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S-----S----------------
--------------------------S--S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_350
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------ACATCCCCTTCGTGGCAAAT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>reverse_1583
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------CTCACCTGACGCCGTCAT
G-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>forward_880
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------CTAGGCACGAATTCCGACGA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>reverse_3343
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------CCAAATTGGCATGGCATC
GT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
