>input_sequence_50834
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-------------------------------------------------------------------ATGCTACATGCAA
TTGAGAGCAATGCCCCAGATATCTCTACTGTCGACCTTGAACTTGGCGACCAAGTGGATTTCTCACTCTCACTGGGAGAT
GGTTCATCTCAAGTGAAGCAGCTCCGAATAACACCTGCATCCCCAAGTTACGCTCTCGGCAAGCTTCCATCAATCACACC
CGGTGTTGAAGTCCTTGACATATTGTTGTTGCCACACGAGGTATGC--AATCTGAGACTTTAGACCGGCAATTCCTTGGT
TTTGCCTTCCATAATAAGAGCAT-----------CTCCATCAGATCCTCTAAACTTAAATTACTTGGTTCTGCG------
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----------------ATCAGCTATTGCTCTAAGGAGTAGTTGTTATATCAGGGGACATACTAATCTGAGGAATCTCTTT
CTTCAGCAGGTGAGCACACCAATGGTGCCCGGCAAATTCCAACACCTCAAGTACTTGAATATTTCTCTCCCTGCTGTCTC
GGCAGCAGATGAATATGATTATTTGTCTCTGTTAGCTTTTCTTGATGCTTCTCCTGCCTTGGAGACTCTCGTCTTGAGCG
TAAGTCCTGTTATATAGCCATTGATTCAACAATTGAGTATTATTACCGTTTCTTTACAAAGTCTGCTTATTAATTAACTC
AGATTATCATGCCTATTGTCTTTAGCTGATCATAGATTTCTATTTTTACTTCAAAGCTAAGTAATTTAGAAAATAAAATA
ATCTCTTTTCATAAATACACGACACCGTAAAAAGCTTGCAATCAAACTTTGTCAACTCTCTTCGATATAGTAAACCATTT
TGACTGGTCAGGTTACAGTTGTTCCGTTAGATTTGTCAGGGATCACAC----AATATCATATTTTTTC-ATTAAAATAGT
TATATGAAAAGCAACGGCCAAACATGCATATTTGAGATTGTAACAATGCTCGAAACATCATTTATTTATGAACAAGTGGA
GTATTTAGTAAC---ATACATAGATAAGGCGCATCTCATGCTAATCTTGTCTTTGAGCCCATTTTTATTTTTCAGCTGGT
TCATCTAGAACTATTGTCATTTTTGTGAGAAGTAGTTGACATCAACATATTGTGCCCTTGCAGTCAGCGAGCATTATGAA
CTGTGTTAACAGAGGCTACGGTCGGATTCATCGCGATGTTTCACATTTGGCGCGGGCGCAAGAGTTTCGCCATGGCAGCC
TCAAGAACGTGACGATATATAGTTTTTACTCGGCTGAGAGCATGATTGAGCTAACCTGTCGTATGCTGAAGCACACGGCT
TCGCTTGAGTGCCTGACGTTGGACACCACCCATGGTTACTCTAGGTGTTCCTCATGCAGAAGCGGCAGGTGCTTCCCCAT
GGACGCGCGTGATGTCCTACAGGCCCAGAAATCGCTCGTGGCTATAAGAAGATACATCAAGCCCGAAGTACCCTGTAATG
TCAACTTGATTGTTGTTGAGCCTTGCAGTTCCTGTCATGCGAGCGCTAACTGA---------------------------
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>chr5D_1_TraesCS5D01G258800
GAATTAGACCTAGTCAGTGGGGTGCCAAATATTCAGACGGGTGTCAAGCTTGCTAGTACATAGTACATGTTTATTTCAGT
TGGTTAACCGCGCCAAGTTTGT--TCCAGAAAAGAATGTTGCACTATTAGCCCAGTGATGCCATCGTCCTACTGTAGAAG
TAAACACGCACAATCTCTCATGCATCCCGGTTAATAATGACGACAATGCCATATGTAAAGCAGCTACTGACCAGAGTCAT
GTTCTAGTCCACTTTCTTATCACAAGATCA---------TACATATGGTTCGTTTTTATT---TTTGCCCCACTACTGGT
TATTGACGCCATCATTCTGATTTTACAATGCCAATGCTGATTTCTCCTCCCTTGCTTCTGCCTGCAGGATGTCGTGCATC
ATATACATGCCCTAATGCCGCTGCGAGACGCCGCACGTGCTGCGTGCGTGTCTCGGTCATTTCGACGTTCCTGGAGACAC
TATCCTAATCTCACCTTCGGTATGCAACAACTGGGCTTGATTAGAAAAGCAGGAACAGTGGACGAAGTAGCAATGGATCT
TGTAAGCAGAATTGACCATATCGTTGGAAATCATTCAGGCACCGGAGTGAAAACGCTTGAGCTCCAACTCCCCTGGAACT
GGAACAGACTCGACACCTCTTACGTCGACAGGTTCCTCAAGGCTGCCATTGCGCCCGGTATCCAAGAACTCACTGTGATG
CCGCCCTTATTACAGCGT------------TACAACTTCCCGTGCTCGCTTTTATCAGGCGAGAGCGGGCGGTCGATTCG
GTATCTT-AACTCACCAATTCTAGTTTCCATCCCACCGCCGGACTTGGTTGCCTGACAAGATTGCACCTGCAGTCCGTGC
GTATCGGCGACGACGAGTTGGGGTGCTTCCTTTATGAGTCTTTGGCTTTGAGGCATCTGCGACTCTCTGATTGTGGTGAG
ATCATCTGCTTGAAGATACCTTGCCTGCTGCGGCACCTCAGGTCCGTGGAGGTGTTTTGAGTGTGAGATGCTACATGCAA
TTGAGAGCAATGCCCCAGATATCTCTACTGTCGACCTTGAACTTGGCGACCAAGTGGATTTCTCACTCTCACTGGGAGAT
GGTTCATCTCAAGTGAAGCAGCTCCGAATAACACCTGCATCCCCAAGTTACGCTCTCGGCAAGCTTCCATCAATCACACC
CGGTGTTGAAGTCCTTGACATATTGTTGTTGCCACACGAGGTATGC--AATCTGAGACTTTAGACCGGCAATTCCTTGGT
TTTGCCTTCCATAATAAGAGCAT-----------CTCCATCAGATCCTCTAAACTTAAATTACTTGGTTCTGCG------
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----------------ATCAGCTATTGCTCTAAGGAGTAGTTGTTATATCAGGGGACATACTAATCTGAGGAATCTCTTT
CTTCAGCAGGTGAGCACACCAATGGTGCCCGGCAAATTCCAACACCTCAAGTACTTGAATATTTCTCTCCCTGCTGTCTC
GGCAGCAGATGAATATGATTATTTGTCTCTGTTAGCTTTTCTTGATGCTTCTCCTGCCTTGGAGACTCTCGTCTTGAGCG
TAAGTCCTGTTATATAGCCATTGATTCAACAATTGAGTATTATTACCGTTTCTTTACAAAGTCTGCTTATTAATTAACTC
AGATTATCATGCCTATTGTCTTTAGCTGATCATAGATTTCTATTTTTACTTCAAAGCTAAGTAATTTAGAAAATAAAATA
ATCTCTTTTCATAAATACACGACACCGTAAAAAGCTTGCAATCAAACTTTGTCAACTCTCTTCGATATAGTAAACCATTT
TGACTGGTCAGGTTACAGTTGTTCCGTTAGATTTGTCAGGGATCACAC----AATATCATATTTTTTC-ATTAAAATAGT
TATATGAAAAGCAACGGCCAAACATGCATATTTGAGATTGTAACAATGCTCGAAACATCATTTATTTATGAACAAGTGGA
GTATTTAGTAAC---ATACATAGATAAGGCGCATCTCATGCTAATCTTGTCTTTGAGCCCATTTTTATTTTTCAGCTGGT
TCATCTAGAACTATTGTCATTTTTGTGAGAAGTAGTTGACATCAACATATTGTGCCCTTGCAGTCAGCGAGCATTATGAA
CTGTGTTAACAGAGGCTACGGTCGGATTCATCGCGATGTTTCACATTTGGCGCGGGCGCAAGAGTTTCGCCATGGCAGCC
TCAAGAACGTGACGATATATAGTTTTTACTCGGCTGAGAGCATGATTGAGCTAACCTGTCGTATGCTGAAGCACACGGCT
TCGCTTGAGTGCCTGACGTTGGACACCACCCATGGTTACTCTAGGTGTTCCTCATGCAGAAGCGGCAGGTGCTTCCCCAT
GGACGCGCGTGATGTCCTACAGGCCCAGAAATCGCTCGTGGCTATAAGAAGATACATCAAGCCCGAAGTACCCTGTAATG
TCAACTTGATTGTTGTTGAGCCTTGCAGTTCCTGTCATGCGAGCGCTAACTGATTCTAGACTTTTTTGTTTCAACTTAGA
ACTGCATATTTACATGCTACTAGAAGAACGCCCGTGCGTTGCAACGGGGCCACATTTAAGTTTAAAAGTTCAGTATCAAT
TATGTTAATATTACATTTAATATTCTCATACATATTAAGTGACATTGACGACTTTTTT-ACCATCAAATTCTCACACACA
--CACCCTCTCCCTCCCTCTTCCTCACTCTCTCTCCCC--CTCTCCCTCACTCGGGAGGTGGGACGAAAATAAACCCGGA
ACGGAGACTACCAACTGAGACATTAGAAGTAGAGATCATTTAGTTGATAAGAATAAATAGAAAACGGTGTTAAAAAGAAG
AAACATATTAGAATACATTGAAAAACCAAAAGGACGATGTAAAAGAGGATTCGCCCTG-C-CCCCGGGCCTTGCCACCGA
ACCGGCTCAGCGGTCCAGTCCTCGCGCGGTCGTCTTCTCCTGTTCCCCGAGCCGCGTCGCTACAGAGCCGGGCTCCCGCC
CGACCACCTCGCTGGCATCGAAGGGGAATGG-TAAGGGTGACGCCCTTCCTTCCCTGCCCCCATGGCCTCACTCCTCCTC
GACG-CCCCCTCCCAAATCCACTTCTCCTC---GCTCGCTCGATCCCGTCGATCTGGACGAAGTCAGACGCCACGGCCAC
CATGACCGACCCCGTCCACATAGCCACTGCCCTCCCTGCGGGCTAAGAGCTTGTCGAGGAGCTCCGAACCCCTTCGCTAC
TTCGTCTGCGCCAACGAGATCAAGTCCAGCACCCCCGCATCGACATCGCTGCCGTCTTCCTCAACCTTGGGCCACCGCGA
CATTGCCGTTCGATCCGCGCTGCCCCGAGCTCCCATGTCTTCCCCTAGGGCGTCATTGACACCGCCATGATCTCCTCTTG
CCTTTCCCCTGTTTCCCCTCTCGTTTGCTCTCGTTAGGTATTTCACCGTGGCCAAGAACCGCCGTCCGCCATGGCCATTG
CAGGGGTAGCCACCGAGCTCATCGG
>chr5B_1
GAATTAGACCTTGTTAGTGAGGTGCCAAATATTCAGACGGATGTCAAGCTTGCT---------------TTTATTTCAGT
TGGTTAACCACACCAAGTTTGTGTTCCAGAAAAGAATGTTGCACTATTAGCCTAGTGATGCCATTGTCCTACTGTAGAAG
TAAACATGCATCATCTCT---------------------------------------AACCAGCTACTGAC--CAGTCAT
GTTCTAGTCCACTTTCTTAACACAAGGTTATAGTGCCACTACATATGGATCGTTTT--TT---TTTGCCCCACTACTGGT
TATTGACGCCATCGTTCTGATATTATGATGCCAATGCGCTGATCGCCTCCCTTGCTTCTGCCTGCAGGATGTCGTGCATC
ATATACATGGCCTAATGCCGCTGCGAGACGCAGCACGTGCTGCGTGCGTGTGTCGATCATTTCGACGTTCCTGGAGACAC
TATCCTAACCTCACCTTCGGCATGAAAGAACTGGGCTTGATTGGAAAAGCAGCCACAGTGGACGAAGGAGCAATGGATCT
TCTAAGCAGAACTGACCATATCTTTGGAAATCATTCAGGCATCGGAGTGAAGACGCTTGAGCTTCACCTCCCCTGGAAGT
GGAACAGACTCGACACCTCTTACGTCGACAGGTTCCTCAAGGCTGCCATTGCACCCGGTATCCAAGAACTCACCGTGATG
CTGCCCTTGTTCCGGCACTGCAGAACAGACTACAACTTCCCGTGCTCGCTTTTATCAGGCGAGAGCGGGCGGTCAATTCG
GTATCTTAAACTCACCAATTCTATTTTCCATCCCACCGCCGGACTTGGTTGCCTGACGAGATTG----------------
-CATCAGCGATGACGAGTTGGGGTCCTTCCTTTCTGATTCTTTGGCTTTGAGGCATCTGCGACTCTCTTGTTGTGATGAG
ATCGTCTGCTTGAAGATACCTTGCCTGCTGCGGCACCTCAGGTCCCTGGAGGTGTTTC-AATGTAAGATGCTACATGCAA
TTGAGAGCAATGCCCCAGATATCTCTAGTGTAGACCTTGGACTTGGCGACCAAGTGGATTTCTCACTCTCACTGGGAGAT
GGTTCATCTCAAGTGAAGCAGCTCCGAATATCACCTGCATCCCCAAGTTATGCTCTCGGCAAGCTTCCATCAATTACACT
CGCTCTTGAAGCCCTTAACATATCGTTGTTGCCACACGAGGTATGCATAATCTCAGACTTTAGACCGATAATTCCTTGGT
TTTGTATTC-----------CAT-----------CTCCAGCGGATCCTCTAAACTTAAATTCCTTGGTTCTGCGATCAGC
TATTGCTCTAAGGACTACTCCCTCTGTTCCATAATATAAGAACATTTTTCAAGCCATGTAAGCTTGAAAAACGTTCTTAT
ATTATGGGACGGAGGGA-------------------GTAGTTGTTATGTCAAGTGACAAACTAATCTGATGCACCTCTTT
CTTCAGCAGGTGAGCACACCAATGGTGCCTGGAAAATTCCACCACCTCAAGTACTTGAATATTTCTCTTC-CGCTGTCTC
GGCAGCAGATGAATATGATTATTTGTCTCTGTTAGCTTTTCTTGATGCTTCTCCTGCCTTAGAGACTCTCGTCTTGAGGG
TAAGTCCTGTTATATAGCCAT----TCAACAATTGAGCATTATTACCGTTCCTTTACAAAGTCGGTTTATTAATTAGCTC
A-ATTGTCATGCCTATTGTCTTTAGTTGATCATAGATTTCTATTTTTACTACAAAGCTAAGTAATTTAGAAAATAACAGT
ATCTCTTTTCATAAATACACGATACAGTAGAAAGCTTGCAATCAAACTTTGTCAACTCTCTTTGATATAGTTAACCATTT
TGACTGGTCAGGTTACAGCTGTTCCATTAGATTTGTCAGGGACCACTACACGAATATCATA---TTTTTATTAAAATAGT
TATAGG-AAAGTAACGGCCAAACATGCATATTTGAGATTGTAACAATGCTCAAAACATCATTTATTTGTGAACAAGTGGG
AATATTGAGGTACATATACATAGATAATGCGCATCTCATGCAAATCTTGTCTTTGAGCCCATTTTTATTTTTCAGACGGT
TCATCTAGAACTGTTGTCATCTT-GTGAG-AGTAGTTGACATTAACATATTGTGCCCTTGCAGTCAGCGAGGATTATGAA
CTGTGTTAACAGAGGCTACGGTAGGATTCACCGTGATGTTTCACATTTGGCGCGGGGGCAAGAATTTCGCCATGATAGCC
TCAAGAATGTGACGATCTATAGTTTCTACTCTGCTAAGAGCATGATTGAGTTAACCTGTTGTATGCTGAAGCACACGGCT
TCACTTGAGTGCCTGACGCTGGACACCACCTATGGTTACTCTAGGTGTTCCTCATGCAGAAGCGGCAGGTGCTTCCCCAT
GGACACGCGTGATGTCCTACAAGCCAAGAAAGCGCTCGTGGCTATAAGAAGATACATCAAGCCCGAAGTACCCTGTAATG
TCAACTTGATTGTTGTGGAGCCTTGCAGTTCCTGTCATGTGAGCGATAACTGATTCTATACTTTTCTGTTTCAACTTAGA
ACTGCATATTTACATGGTATTAGAGATACG--------------------------------------------------
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>chr5A_2
-AATTAGACCTAGTTAGTGGGGTGCCAAATATCCAGACGGATGTCAAGCTTGCTAC-----AGTACATGTTTATTTCAGT
TGGTTAACCACACCAAGTTTGTGTTTCAG--AAGAATGTTGCACTATTAGCCCAGTGATGCCATCGTCCTACTGTAGAAG
TAAACATGAACCATCTCT---------------------------------------AACCAGCTACTGACCACAGTCAT
GTTCTAGTCCACTTTCTTAACATAAGATTATAGTGCCACTACATATGGATCGTTTT--TTCTTTTTGCCCCATTACTGAT
TATTGATGCCATCATTCTGATTTTACAATGCCAATGCTGATTTCTCCTCCCTTGCTTCTGCCTGCAGGATGTCGTGCATC
ATATACATGCCCTAATGCCGCTGCGAGACGCCGCACTTGCTGCGTGCGTGTCTCGGTCATTTCGACGTTCCTGGAGACAC
TATCCCAATCTCACCTTCGGTATGAAACAACTCGGTTTGATTGGAAAAGCAGCCACGGTGGACGAAGGAGCAATGGATCT
TCTAAGCAGAATTGACCATATCTTTGGAAATCATTCAGGCATCGGAGTGAAGACGCTTGAGCTTCACCTCCCCTGGAACT
GGAACAGACTCGACACCTCTTACGTCGACAGGTTCCTCAAGACTGCCATTGCACCCGGTATCCAAGAACTCACCGTGATG
CTGCCCTCATTCCGGCACTGCAGAACAGACTACAACTTCCCGTGCTCGCTTTTATCAGGCGAGAGCGGGCGGTCGATTCG
GTATCTTAAACTCACCAATTCTAGTTTCCATCCCACCGCCGGACTTGGTTGCCTGACGAGATTGCACCTGCGGTCCGTGC
GCATCGGTGACGATGAGTTGGGGTACTTCCTTTCTAATTCTTTGGCTTTGAGGCATCTGCTACTCTCTTGTTGTGGTGAG
ATCATCTGCTTGAAGATACCTTGCCTGCTGCGGCACCTCAGGTCCGTGGAGGTG-TTTGAGTGTGAGATGCTACATGCAA
TTGAGAGCAATGCCCCAGATATCTCTAGTGTCGACCTTGGACTTGGCGACCAAGTGGATTTCTCAGTCTCACTGGGAGAC
GGTTCATCTCAAGTGAAGCAGCTCCGAATATCACCTGCATCCCCAAGTTATGCTCTCGGCAAGCTTCCATCAATCACACC
CGGTGTTGAAGTCCTTAACATATCGTTGTTGCCACACGAGGTATGCATAATCTGAGACTTTAGACCGTCAATTCCTTGGT
TTTGTATTC-----------CATAATAAGAGCATCTCCAGCGGATCCTCTAAACTTAAATTCCTTGGTTCTGCG------
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----------------A-------------------GGAGTTGTTATATCAGGGGACATACTAATCTCG-GCACCTCTTT
CTTCAGCAGGTGAGCACACCAATGGTGCCCGGAAAATTCCACCACCTCAAGTACTTGAATATTTCTCTTCCCGCTGTCTC
GGCAGTAGATGAATATGATTATTTGTCTCTGTTAGCTTTTCTTGACGCTTCTCCTGCCTTGGAGACTCTCGTCTTGAGGG
TAAGTCCTGTTATATAGCCATTGATTTAACAATTGAGTATTATTACTGTTTCTTTACAAAGTCTGTTTATTAAATAGCTC
TGATTGTCATGCCTATTGTCTTTAGCTGATCATAGGTTTCTATTTTCACTT-----CTAAGTAATTTAGAAAATAACAGT
ATCTCTTTTCATAAATACAAGACACC-TAGAAAGCTTGCAATCAAACTTTGTCAACTCTCCTCGATATAGTAAACCATTT
TGACCGGTCAGGTTACAGTTGTTCCATTAGATTTGTCAGGGATCACAC----AATATCAATTTTTTTATATTAAAATAGT
TGTATGTAAAGTAACGGTCAAACATGCATATTTGAGATTGTAACGATGCTCAGAACATAATTTATTTATGAACAAGTGGA
GTATTTAGTAAC---ATACATAAATAAGGCGCGTCTCATGCTAATCTTGTCGTTGAGCCCATTTTTATTT--CAGACGGT
TCATCTAGAACTATTGTCATTTC-GTGAGAAGTAGTTGACATTAACATATTGTGTCCTTGCAGTCAGCGAGGATTATGAA
CTGTGTTAACAGAGGCTGCGGTAGGATTCATTGTGATGTTTCACATTTGACGCGGGAGCAAGAATTTCGCCATGGCAGCC
TCAAGAATGTGACGATCTATAGTTTTTACTCTGCTGAAAGCTTGATTGAGCTAACCTGTCGTATGCTGAAGCACACAGCT
TCGCTTGAGTGCCTGACGCTGGACACCACCTATGGTTACTCTAGGTGTTCCTCATGCAGAAGCGGCAGGTGCTTCTCCAT
GGACACGCGTGATGTCCTACAAGCCCAGAAAGCGCTCGTGGCTATAAGAAGACGCATCAAGCCCCAAGTACCCTGTAATG
TCAACTTGATTGTTGTGGAGCCTTGCAGTTCGTGTCATGTGAGCGATAACTGATTCTAGACTTTTCTGTTTCAACTT---
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>chr3D_2500
TTAATA--------------------------------------------------------------------------
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----------------CTACTAGAAGAACGCCCGTGCGTTGCAATGGAGCCACATT-AACTTTAAAATTTTAATATCAAT
TATGTTAATATTACATTTAATATTCTCATACATATTAAGTGACAATGACGACCTTTTTTATCATCAAATTCTCACACACA
--CACCCTCTCCCTCCCTCTTCCTCACTCTCTCTCCCC--CTCTCCCTCACTCGGGAGGTGGGACGAAAATAAACCCGAA
ACGGAGACTACCAACTGAGACATTAGGAGTAGAGATCATTTAGTTGATAAGAATAAATAGAAAACGGTGTTAAAAAGGAG
AAACAGATTAGAATACATTGAAAAACCAAAAGGACGATGTAAAAGGGGATTCGCCCTG-CCCCCCGGGCCTTGCCACCGA
ACCGGCTCAGCGGTCCAGTCCCCGCGCGGTCGTCTTCTCCTATTCCCCGAGCCGCGTCGCTACAGAGCCGGGCTCCCGCC
CGACAACCTCGCTGGCATCGAAGGGGAATGGATAAGGGTGACGCCCTTCCTTCCCTGCCCCCATGGCCTCACTCCTCCTC
GACG-CCCCCTCCCAAATCCACTTCTCCTCCTCGCTCGCTCGATCCCGTCGATCTGGACGAAGTCAGACGCCACGGCCAC
CATGACCGACCCCGTCCACATGGCCACTGCCCTCCCTGCGGGCTAGGAGCTTGTCGAGGAGCTCCGAACGCCTTCGCTAC
TTCGTCTGCGCCAACGAGATCAAGTCCAGCACCCCCGCATCGACGTCGCTGCCGTCTTCCTCAACCTTGGGCCACCGCGA
CATTGCCGTTTGATCCGCGTCGCCCAGAGCTCCCATGTCTTCCCCTAGGGCGCCATTGACACCGCCATGATCTCCTCTTG
CCTTTCCCATGTTTCCCCTCTCGTTTGCTCTCGTTAGGTATTTTGCCGTGGCCGAGAACCGCCGTCCGCCATGGCCATTG
CAGGGGTAGCCACTGAGCTCCTCGG
>chr6D_2507
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----------------CTACTAGAAGAACGCCTGTGCGTTGCAACGGGGCCACATT-AACTTTAAAAGTTCAATATCAAT
TATGTTAATATTACATTTAATATTCTCATACATATTAAGTGACATTGACGACCTTTTT-ACCATCAAATTCTCACACACA
--CACCCTCTCCCTCCCTCTTCCTCACTCTCTCTCCCC--CTCTCCCTCACTCGGGAGGTGGGACGAAAATAAACCCGGA
ACAGAGACTACCAACTGAGACATTAGTAGTAGAGGTCATTTAGTTGATAAGAATAAATAGAAAATGGTGTTAAAAAGGAG
AAACAGATTAGAATACATTGAAAAACCAAAAGGACGATGTAAAAGGGGATTCGCCCTG-CCCCACGGGCCCTGCCACCGA
ACCGGCTCAGCGGTCCAGTCCCCGCGCGGTCGTCTTCTCCTGTTCCCCGAGCCGCGTCGCTACAGAGCCGGGCTCCCGCC
CGACCACCTCGCTGGCATCGAAGGGGAATGGATAAGGGTGACGCCCTTCCTTCCCTGCCCCCATGGCCTCACTCCTCCTC
GACG-CCCCCTCCCAAATCCACTTCTCCTCCTCGCTCGCTCGATCCCGTCGATCTGGATGAAGTCAGACGCCACGGCCAC
CATGACCGACCCCGTCCACATGGCCACTACCCTCCCTGCGGGCTAGGAGCTTGTCGAGGAGCTTCGAACGCCTTCGCTAC
TTCGTCTGCGCCAACGAGATCAAGTCCAGCACCCCCGCATCAACGTCGCTGCCGTCTTCCTCAACCTTGGGCCACCGCGA
CATTGTCGTTTGATCCGCGCCGCCCCGAGCTCCCATGTCTTCCCCTAGGGCGCCATTGACACCGCCATGATCTCCTCTTG
CCTTTCCCCTGTTTCCCCTCTCGTTTGCTCTCGTTAGGTATTTCACCGTGGCCGAGAACCGCCGTCCGCCATGGCCATTG
CAGGGGTAGCCACTGAGCTCCTCGG
>chr5D_2508
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-----------------TACTAGAAGAACGCACGTGCGTTGCAACGGGGCCACTTT-AACTTTAATAGTTCAATATCAAT
TATGTTAATATTACATTTAATATTCTCATACATATTAAGTGACATTGACGACCTTTTTTACCATCAAATTCTCACACACA
--CACCCTCTCCCTCCCTCTTCCTCACTCTCTCTCCCC--CTCTCCCTCACTCGGGAGGTGGGACGAAAATAAACCCGGA
ACGGAGACTACCAACTGAGACATTAGGAGTAGAGATCATTTAGTTGGTAAGAATAAATAGAAAACGGTGTTAAAAAGGAG
AAACAGATTAGAATACATTGAAAAACCAAAAGGACGATGTAAAAGGGGATTCGCCCTG-CCCC-CGGGCCTTGCCACCGA
ACCGGCTCAGCGTTCCAGTCCCCGCGCGGTCGTCTTCTCCTGTTCCCCGAGCCGCGTCGCTACAGAGCCGGGCTCCCGCC
CGACCACCTCGCTGGCATCGAAGGGGAATGGATAAGGGTGACACCCTTCCTTCCCTGCCCCCATGGCCTCACTCCTCCTC
GACGCCCCCCTCCCAAATCCACTTCTCCTCCTCGCTCGCTCGATCCCGTCGATCTGGACGAAGTCAGACGCCACGGCCAC
CATGACCGACCCCGTCCACATGGCCACTGCCCTCCCTGCGGGCTAGGAGCTTGTCGAGGAGCTCCGAACGCCTTCGCTAC
TTCGTCTGCGCCAACGAGATCAAGTCCAGCACCCCCGCATCGACGTCGCTGCCGTCTTCCTCAACCTTGGGCCACCGCGA
TATTGCCGTCCGATCCGCACCGCCCCGAGCTCCCATGTCTTCCCCTAGGGCGCCATTGACACCGACATGATCTCCTCTTG
CCTTTCCCCTGTTTCCCCTCTCGTTTGCTCTCGTTAGGTATTTCCCCGTGGCCGAGAACCGCCGTCCGCCATGGCCATTG
CAGGGGTAGCCACCGAGCTCCTCGG
>chr7D_2508
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-----------------TACTAGAAGAACGCCCGTGCGTTGCAGCGGGGCCACATT-AACTTTAAAAGTTCAATATCAAT
TATGTTAATATTACATTTAATATTCTCATACATATTAAATGACATTGACGACCTTTTTTACCATTAAATTCTCACACACA
--CACCCTTTCCCTCCCTCTTCCTCACTCTCTCTCTCTCTCTCTCCCTTACTCGGGAGGTGGGACGAAAATAAATCCGGA
ACAGAGACTACCAACTGAAACATTAGGAGTAGAGATCATTTAGTTGATAAGAATAAATAGAAAACGGTGTTAAAAAGGAG
AAACAAATTAGAATATATTGAAAAACCAAAAGGACGATGTAAAAGGGGATTCGCCCTG-CCCC-CGGGCCTTGCCACCGA
ACCGGCTCAGCGGTCCAGTCCCCGCGCGGTCGTCTTCTCCTGTTCCCCGAGCCGCGTCGCTACAGAGCCGGGCTCCTGCC
CGACCACCTCGCTGGCATCGAAGGGGAATGGATAAGGGTGACGCCCTTCCTTCCCTGCCCCCATGGCCTCACTCCTCCTC
GACG-CCCCCTCCCAAATCCACTTCTCCTCCTCGCTCGCTCGATCCCGTCGATCTGGACGAAGTCAGACGCCACGGCCAC
CATGACCGACCCCGTCCACATGGCCACTGCCCTCCCTGCGGGCTAGGAGCTTGTCGAGGAGCTCCGAATGCCTTCGCTAC
TTCGTCTGCGCCAACGAGATCAAGTCCAGCACCCCCGCATCGACATCGCTGCCGTCTTCCTCAACCTTGGGCCACCGCGA
CATTGCCGTTCGATCCGCGCCGCCCCGAGCTCCCATGTCTTCCCCTAGGGCGCCATTGACACCGCCATGATCTCCTCTTG
CCTTTCCCATGTTTCCCCTCTCGTTTGCTCTCGTTAGGTATTTCACCGTGGCCGAGAACCGCCGTCTGCCATGGCCATTG
CAGGGGTAGCCACCGAGCTCCTCGG
>chr2D_2508
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-----------------TACTAGAAGAACGCCCGTGCGTTGCAACGGGGCCACATT-AACTTTAAAAGTTCAATATCAAT
TATGTTAATATTACATTTAATATTCTCATACATATTAAGTGACATTGACAACCTTTTTTACCATCAAATTCT--CACACA
--CACCCTCTCCCTCCCTCTTCCTCACTCTCTCTCCCC--CTCTCCCTCACTCGGGAGATGGGACGAAAATAAACCCGGA
ACGGAGACTACCAACTGAGACATTAGGAGTAGAGATCATTTAGTTGATAAGAATAAATAGAAAATGGTGTTAAAAAGGAG
AAACATATTAGAATACATTGAAAAACCAAAAGGATGATGTAAAAGGGGATTCGCCCTG-CCCC-CGGGCCTTGCCACCGA
ACCGGCTCAGCGGTCCAGTCCCCGCGCGGTCGTCTTCTCCTGTTCCCCGAGCCGCGTCGCTACAGAGCCGGGCTCCCGCC
CGACCACCTCGCTGGCATCGAAGGGGAATGGATAAGGATGACGCCCTTCCTTCCCTGCCCCCATGGCCTCACTCCTCCTC
GACGCCC-CCTCCCAAATCCACTTCTCCTCCTCGCTCGCTCGATCCCGATGATCTGGACGAAGTCAGACGCCACGGCCAC
CATGACCGACCCCGTCCACATGGCCACTGCCCTCCCTGCGGGCTAGGAGCTTGTCGAGGAGCTCCGAACGCCTTCGCTAC
TTCGTCTGCGCCAACGAGATCAAGTTCAGCACCCCCGCATCGACGTCGCTGCCGTCTTCCTCAACCTTGGGCCACCGCGA
CATTGCCGTTCGATCCGCGCCGCCCCGAGCTCCCATGTCTTCCCATAGGGCACCATTGACACCGCCATGATCTCCTCTTG
CCTTTCCCCTGTTTCCCCTCTTGTTTGCTCTCGTTAGGTATTTCGCCATGGCCGAGAACCGCCGTCCGCCATGGCCATTG
TAGGGGTAGCCACCGAGCTCCTCGG
>chr5D_2509
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------------------ACTAGAAGAACGCTCGTGCGTTGCAACGGGGCCACATT-AACTTTAAAGGTTCAATATCAAT
TATGTTAATATTACATTTAATATTCTCATACATATTAGGTGACATTGACGACCTTTTTTACCATCAAATTCT--CACACA
CACACCCTCTCCCTCCCTCTTCCTCACTCTCTCTCCCC--CTCTCCCTCACTCGGGAGGTGGGACGAAAATAAACCCGAA
ACGGAGACTAGCAACCGAGACATTAGGAGTAGAGATCATTTAGTTGATAAGAATAAATAGAAAACGGTGTTAAAAAGGAG
AAACAGATTAGAATACATTGAAAAACCAAAAGGACGATGTAAAAGGGGATTCGCCCTGCCCCC-CGGGCCTTGCCACTGA
ACCGGCTCAGCGGTCTAGTCCCCGCGCGGTCGTCTTCTCCTTTTCCCCGAGCCGCGTCGCTACAGAGCCGGGCTCCCGCC
CGACCACCTCGCTGGCATCGAAGGGGAATGGATAAGGGTGACGCCCTTCCTTCCCTGCCCCCATGGCCTCACTCCTCCTC
GACGCCC-CCTCCCAAATCCACTTCTCCTTCTCGCTCGCTCGATCCCGTCGATCTAGACGAAGTCAGACGCCACGGCCAC
CATGACCGACCCCGTCCACATGGCCACTGCCCTCCCTGCGGGCTAGGAGCTTGTCGAGGAGCTCCGAACGCCTTCACTAC
TTCGTCTGCGCCAACGAGATCAAGTCCAGCACCCCCGCATCGACGTCGCTGCCGTCTTCCTCAACCTTGGGCCACCGCGA
CATTGCCGTTCGATCCGCGCCGCCCCGAGCTCCCATGTCTTCCCCTAGGGCGCCATTGACACCGCCATGATCTCCTCTTG
CCTTTCCCCTGTTTCCCCTCTCGTTTGCTCTCGTTAGGTATTTCGCCGTGGCCGAGAACCGCCGTCCGCCATGGCCATTG
TAGGGGTAGCCACCGAGCTCCTCGG
>chr7D_2509
--------------------------------------------------------------------------------
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------------------ACTAGAAGAACGCCCGTGCGTTGCAACGGGGCCACATT-AAATTTAAAAGTTCAATATCAAT
TATGTTAATATTACATTTAATATTCTCATACATATTAAGTGACATTGACGACCTTTTTTACCATCAAATTCT--CACACA
CACACCCTCTCCCTCCCTCTTCCTCACTCTCTCTCCCC--CTCTCCCTCACTCGAGAGGTGGGACGAAAATAAACCCGGA
ACGGAGACTACCAACTGGGACATTAGGAGTAGAGATCATTTAGTTGATAAGAATAAATAGAAAACGGTGTTAAAAAGGAG
AAACAAATTAGAATACATTGAAAAACCAAAAGGACGATGTAAAAGGGGATTCGCCCTGCCCCC-CGGGCCTTGCCACCGA
ACCGGCTCAGCGGTCCAGTCCCCGCGCGGTCGTCTTCTCCTGTTCCCCGAGCCGCGTCGCTACAGAGCCGGGCTCCTGCC
CGACCACCTCGCTGGCATCGAAGGGGAATGGATAAGGGTGATGCCCTTCCTTCCCTGCCCCCATGGCCTCACTCCTCCTT
GACGCCC-CCTCCCAAATCCACTTCTCCTCA---CTCGCTCGATCCCATCGATCTGGACGAAGTCAGACGCCACGGCCAC
CATGACCGACCCCGTCCACATGGCCACTGCCCTCCCTGCGGACTAGGAGCTTGTCGAGGAGCTCCGAACGCCTTCGCTAC
TTCGTCTGCGCCAACGAGATCAAGTCCAGCACCCCCGCATCGACGTCGTTGCCGTATTCCTCAACCTTGGGCCACCGCGA
CATTGTCGTTCGATCCGCGCCGCCCCGAGCTCCCATGTCTTCCCCTAGGGCGCCATTGACACCGCCATGATCTCCTCTTG
CCTTTCCCCTGTTTCCCCTCTCGTTTGCTCTCGTTAGGTATTTCGCCGTGGCCGAGAACCGCCGTCCGCCATGGCCATTG
CAGGGGTAGCCACCGAGCTCCTCGG
>chr7D_2509
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------------------ACTAGAAGAACGCCCGTGCGTTGCAACGGGGCCACATT-AACTTTAAAAGTTCAATATCAAT
TATGTTAATATTACATTGAATATTCTCATACATATTAAGTGACATTGACGACCTTTTTTACCATCAAATTCT--CACACA
CACACCCTCTCCCTCCCTCTTCCTCACTCTCTCTCCCC--CTCTCCCTCACTCGGGAGGTGGGACGAAAATAAACCCGAA
ACGGAGACTACCAACTGAGACATTAGGAGTAGAGATCATTTAGTTGATAAGAATAAGTAGAAAACGGTGTTAAAAAGGAG
AAACAGATTAGAATACATTGAAAAACCAAAAGGACGATGTAAAAGGGGATTCGCCCTGCCCCC-CGGGCCTTGCCACCGA
ACCGGCTCAGCGGTCCAGTCCCCGCGTGGTCGTCTTCTCCTGTTCCCCGAGCCGCGTCGCTACAGAGCCGGGCTCCCGCC
CGACCACCTCGCTGGCATCGAAGGGGAATGGATAAGGGTGACGCCCTGCCTTCCCTGCCCCCATGGCCTGACTCCTCCTC
GACGCCC-CCTCCCAAATCCACTTCTCCTCCTCGCTCGCTCGATCCCGTCGATCTAGACGAAGTCAGACGCCACGGCCAC
CATGACCGACCCCGTCCACATGGCCACTGCCCTCCCTGCAGGCTAGGAGCTTGTCGAGGAGCTCCGAACGCCTTCGCTAC
TTCGTCTGCGCCAACGAGATCAAGTCTAGCACCCCCGCATCGATGTCGCTGCCGTCTTCCTCAACCTTGGGCCACCGCGA
CATTGCCGTTTGATCCGCGCCGCCCCGAGCTCCCATGTCTTCCCCTAGGGCGCCATTGACACCGCCATGATCTCCTCTTG
CCTTTCCCCTGTTTCCCCTCTCGTTTGCTCTCGTTAGGTATTTCGCCGTGGCCGAGAACCGCCGTCCGCCATGGCCATTG
CAGGGGTAGCCACCGAGCTCCTCGG
>chr7D_2509
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------------------ACTAGAAGAACGCCCGTGCGTTGCAACGGGGCCACATT-AACTTTAAAAGTTCAATATCAAT
TATGTTAATATTACATTTAATATTCTCATACATATTAAGTGACATTGACGACCTTTTTTACCATCAAATTCT--CACACA
CACACCCTCTCCCTCCCTCTTCCTCACTCTCTCTCCCC--CTCTCCCTCACTCGGGAGGTGGGACGAAAATAAACCCGGA
ACGGAGACTACCAACTGAGACATTAGGAGTAGAGATCATTTAGTTGATAAGAATAAATATAAAACGGTGTTAAAAAGGAG
AAACAGATTAGAATACATTGAAAAACTAAAAGGACGATGTAAAAGGGGATTCGCCCTGCCCCC-CGGGCCTTGCCATCGA
ACCGGCTCAGCGGTCCAGTCCCCGCGTGGTCGTCTTCTCCTGTTCCCCGAGCCGCGTCGCTACAGAGCCGAGCTCCCGCC
CGACCACCTCGCTGGCATCGAAGGGGAATGGATAAGGGTGATGCCCTTCCTTCCCTGCCCCCATGGCCTCACTCCTCCTC
GACGCCC-CCTCCCAAATCCACTTCTCCTCCTCGCTCGCTCGATCCCGTCGATCTGGGCGAAGTCAGACGCCACGTCCAC
CATGACCGACCCCGTCCACATGGCCACTGCCCTCCCTGCGGGCTAGGAGCTTGTCGAGGAGCTCCGAACGCCTTCGCTAC
TTCGCCAGCGCCAACGAGATCAAGTCCAGCACCCCCGCATCGACGTCGCTGTCGTCTTCCTCAACCTTGGGCCACCGCGA
CATTGCTGTTCGATCCGCGCCGCCCCGAGCTCCCATGTCTTCCCCTAGGGCGCCATTGACACCGCCATGATCTCCTCTTG
CCTTTCCCCTGTTTCCCCTCTCGTTTGCTCTTGTTAGGTATTTCGCCGTGGCCAAGAACCGCCGTCCGCCATGGCCATTG
CCGGGGTAGCCACCGAGCTCCTCGG
>SNPs
--------------S-------------------------S--------------SSSSSS-------------------
---------S-S--------------------------------------------------------------------
------S----S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-------------S------
-------------------S--------S-------------------S-------SS----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S-----------------S---------SS-------------S------------
-S--------------------S------------------S---------S-----------S--S-------------
----------------------------------------------------S--------------------S------
-S---------S-S--SS--------------------------------------------------------------
---------------------------------------------------------S-------------S--------
-S----------------------S--------S---S------------------------------SS----------
--------------------------------------------------------------------------------
---------------------------S-----------S----------------------------------------
------------------------------S-------------------S-----------------------------
----------------S------S-------------------------------------------S------------
----SS---SSSSSSSSSSS-------------------S-S-------------------S------------------
--------------------------------------------------------------------------------
-----------------SSSSSSSSSSSSSSSSSSS---------------------------------S-S-S------
--------------------------------S--------S--------------------------S--S--------
------------------------------------------------------------------------------S-
-----------------------------------------------------------------S----------S---
-----S----------------------------------------------------------------------S-SS
-----------------------------S--------------------------------------------------
-------------------------S-----------------------------------------S------------
------S----S---------------------------------------S----------------------------
---------------------------------------------------------------------------SS---
-----------------------S------------------S----------------------------S--------
----------------------S----------S----------------------S------S----------------
-------S--------S--------------S------------------------------------------------
------------------S-----------S-------------------------------------------------
----S----------------S---------S------------------------------------------------
----------------S----------------------S-----S-------------------S--------------
--------------------------------------------------------S--S------------S-------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------S--------------------------------------------------S--
---------------------------------------------S----------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S-----------------------S-----------------------S----------
--------------------------------------------------------------------------------
--------------------S-------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------S----
>forward_949
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-------------------------------------------------GAGGCATCTGCGACTCTCTG-----------
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-------------------------
>reverse_2352
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-------------------------------GGCTGAGAGCATGATTGAGC-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>forward_1217
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------------------------ACC
CGGTGTTGAAGTCCTTG---------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>reverse_2485
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----GCGCGTGATGTCCTACAGG---------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>forward_1285
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--------------------------------------------------------------------------------
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-----------------------------------------------------------------CGGCAATTCCTTGGT
TTTGC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>reverse_2502
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---------------------GGCCCAGAAATCGCTCGT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------
>forward_2274
--------------------------------------------------------------------------------
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--------------GCTACGGTCGGATTCATCGC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------
>reverse_3493
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----------------------------------------------------TCATTGACACCGCCATGATCT-------
--------------------------------------------------------------------------------
-------------------------
