>input_sequence_50754
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----------------------------------------------------GTATAAATAAGCTCAACCACCAGCTCCC
ATCTTCATCCCCACCTCACCTGAGCTAGCTTCCAGCTTCAATATAATCAAATCCATCCCTACACCAACACC---------
---------AGCTTCAACCCAATCCTTGTAG-----------------------CTTCCTCCTCCTCCTCCACCTTGACC
TTGAGAGAGA--GAGAGACAGCAAGCGCAACTCCACTCAGGCACTCAGCAATGAAGAGCAGGAGGCAGAGCGGCCGCGGA
GGAGCC------------ATGGC---GGTGGACGGGAGCCACACCCACACCACAAGCAGCG-------------------
-----------------GC------TGCAAGATGGAGCGCAAGGAGGTGGAGAAGAACCGGCGGCTGCACATGAAGGGAC
TCTGCCTCAAGCTCTCCTCCCTCGTCC---CCTCCTCCTCCTCCTCCGACCACCACCTCCGCCATTAT------------
TCTTCCTCGCCGCCGTCCAGCAACAAGGTAAA------------------------------------------------
------------CAAAATCG------------------------------------------------------------
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-------------TCAAAAGATC-----------------TCTTCACAATAATCCTCTCACCCACCTACTGACCTACAC-
AAGATTGCAGATCACTTC-------TCTGAGTCGAAGCACATGCCTTTCTCT----TCCTGACAAAA---------TCTG
AATTCGTTTTTTAATTGTGCGTGGATCACTACACTTATTGATC----------------ACAAGTACAATATT------A
TCAGTGGATCA-TTTCTTTATTTTACTACTA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CTATTATA----
CA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------CTAAAAAACACAA
GATTGTTTGTGTGTGTCTATGC----------------------------------------------------------
--------------------------------------------AAATTCATCAATTCTCGCATGGCCTGACGACGACG-
--GCTTTGGT---TGTGTCTGTGCAGGACGCGGCGACGCAGCTGGACCAGCTGGACAGCGCCGCGGCCTACATCAAGCAG
CTCCGGGGCCGCATCCACGACCTGAAACGCCGCAAGCAGGCCGCCCTCTCTCTCTCCGGCGGCACCGG------------
CGGCTGCTCATCCTCCGTCTCCGCCGGCGACTACAAGGCACAC------------ACTACGACGTCGCTGCCGGTGATCG
AGGTTAGGCATCAGGACGGGA---CGCTGGACGTGGCGCTGGCGAGCGAGGCCGGGCGTCCCTTCCGGCTGCACGAGGTG
ATGGCGATGCTGGAGCAAGAGGGCGCGGAGGTGGTCAGCGCCAGCTTCTCCGTGGTGGGGGACAAGATCTTCTACACGCT
CCACTCCCAGGCGCTCTGCCCACGCATCGGT------------CGGGTCGCCCAGAGGCTGCGCGGCCTCGCCGCCGCAG
CCGCAGCCACC---GTCTCGACG------CTGCTGACATG--------------------ATATCCTCTCTCTAGCT---
--TTTTTTTGCCATGGCGACCGTACCGACTTAT----------CGGAGGCTAGCTGACGCGCGGATGCAAGGAGGGTGGA
TGGAGCTGGTAGATTGATTACTGATTTTGCAGTTGTGCTGCAAGGGGGGTAGTTGATCTTTTTTTCATCGATT-----GG
GGCAGCAATGTTCTATGT---GATGTTTGTTTCAGCTTAAAGAGGA-TCCTTGTACAAGTGTTCTTCCTGGCTGGCTGGG
TTAGGCTTAGTAGTAGGTTGGTTCACTAATGGCTCCTCTGC---------------------------------------
--------------------------------------------------------------------------------
--ATGTTAGTGAA-------------------------------------------------------------------
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---------------------------------------------------------------------------
>chr3B_1_TraesCS3B01G003700
TGGAAGATGATTATCTAGCCAATAGCTTGCTAGTAAACATAGAGAGTGAAATTGTGGAGAAGTACAGCTATGAAGATGTT
CTTGTGCACTTTAAGGGTGTAAAGAAACGAAGGGCTGATCTGTAGTGAACTGGATGCTCCATGGTTAAATAGTATTTTGG
GTATAGTTTCTTTTGTTCTGGAGCTGGTCAATAGTAAACTGAATGTTCCACGGTTAAATAGCACTTTGTAGTGAACCGAA
TTCTCTACTGATTAGAAATGTATTTTGTAAGCTAATCTGGAGAAGATCAATATAATTATCTAAGTTACTTGATATTTGCA
ACATCTAACTTGTTGAATACGTATGATTTCGTATTTTTTTTTACAGCTTCGCCCCTCCAAAGATTTCTTTCAAGCTCCGC
CACTGGCTAGACGGGTCCCACATGTCAGCTCTGGTGTTGGACACGGCTCATTTCCGAATTAGCGTGTTGTGTTACTCGCT
TGACGCCGAGTTGGCGGTTTTTTGTGATTTTCTGCAGAAGCCGCGGTGAACCGTTTCCCTCGCCACACTCCATTTCACAT
GGCCGAGCAAAGCAACAATCAACAATCTGGTTGCGCGTGGCGGGCTGTAGTGGAAAGAAAGCCGAGGATCATGGATGGGT
CCCACACAGAAACATAAAAAAATAAATGAGACCAACCCAAGGCGTTGATATTTTTTTATAGGAGAAACTCCACGAGCACC
GCGCGTCCGAGTTAGGACTCGAATTCGGGTGGGCTGTCAGCAACCTCAGCTGCTCAGCCAAACATACACGTTCCGATGGA
CCCGGAGGAGAGGGAGTTGACCTCGGACGACCACTTGCTACTCCCTCCGTCCATCCCTCACTCAACTGATTCGTTCTTT-
---ATTTATAGCTCTCTTTTTCCTTTTTAGG--------TTGCTCCATTTTATTAATTATTAATCTGTCGCCGTCCGTCC
GTCTTGCTCCTCCCTCCACCTCCAGAACAGAGCACGGCAAGCCGCTCCGGCTGTATAAATAAGCTCAACCACCAGCTCCC
ATCTTCATCCCCACCTCACCTGAGCTAGCTTCCAGCTTCAATATAATCAAATCCATCCCTACACCAACACC---------
---------AGCTTCAACCCAATCCTTGTAG-----------------------CTTCCTCCTCCTCCTCCACCTTGACC
TTGAGAGAGA--GAGAGACAGCAAGCGCAACTCCACTCAGGCACTCAGCAATGAAGAGCAGGAGGCAGAGCGGCCGCGGA
GGAGCC------------ATGGC---GGTGGACGGGAGCCACACCCACACCACAAGCAGCG-------------------
-----------------GC------TGCAAGATGGAGCGCAAGGAGGTGGAGAAGAACCGGCGGCTGCACATGAAGGGAC
TCTGCCTCAAGCTCTCCTCCCTCGTCC---CCTCCTCCTCCTCCTCCGACCACCACCTCCGCCATTAT------------
TCTTCCTCGCCGCCGTCCAGCAACAAGGTAAA------------------------------------------------
------------CAAAATCG------------------------------------------------------------
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-------------TCAAAAGATC-----------------TCTTCACAATAATCCTCTCACCCACCTACTGACCTACAC-
AAGATTGCAGATCACTTC-------TCTGAGTCGAAGCACATGCCTTTCTCT----TCCTGACAAAA---------TCTG
AATTCGTTTTTTAATTGTGCGTGGATCACTACACTTATTGATC----------------ACAAGTACAATATT------A
TCAGTGGATCA-TTTCTTTATTTTACTACTA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CTATTATA----
CA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------CTAAAAAACACAA
GATTGTTTGTGTGTGTCTATGC----------------------------------------------------------
--------------------------------------------AAATTCATCAATTCTCGCATGGCCTGACGACGACG-
--GCTTTGGT---TGTGTCTGTGCAGGACGCGGCGACGCAGCTGGACCAGCTGGACAGCGCCGCGGCCTACATCAAGCAG
CTCCGGGGCCGCATCCACGACCTGAAACGCCGCAAGCAGGCCGCCCTCTCTCTCTCCGGCGGCACCGG------------
CGGCTGCTCATCCTCCGTCTCCGCCGGCGACTACAAGGCACAC------------ACTACGACGTCGCTGCCGGTGATCG
AGGTTAGGCATCAGGACGGGA---CGCTGGACGTGGCGCTGGCGAGCGAGGCCGGGCGTCCCTTCCGGCTGCACGAGGTG
ATGGCGATGCTGGAGCAAGAGGGCGCGGAGGTGGTCAGCGCCAGCTTCTCCGTGGTGGGGGACAAGATCTTCTACACGCT
CCACTCCCAGGCGCTCTGCCCACGCATCGGT------------CGGGTCGCCCAGAGGCTGCGCGGCCTCGCCGCCGCAG
CCGCAGCCACC---GTCTCGACG------CTGCTGACATG--------------------ATATCCTCTCTCTAGCT---
--TTTTTTTGCCATGGCGACCGTACCGACTTAT----------CGGAGGCTAGCTGACGCGCGGATGCAAGGAGGGTGGA
TGGAGCTGGTAGATTGATTACTGATTTTGCAGTTGTGCTGCAAGGGGGGTAGTTGATCTTTTTTTCATCGATT-----GG
GGCAGCAATGTTCTATGT---GATGTTTGTTTCAGCTTAAAGAGGA-TCCTTGTACAAGTGTTCTTCCTGGCTGGCTGGG
TTAGGCTTAGTAGTAGGTTGGTTCACTAATGGCTCCTCTGC---------------------------------------
--------------------------------------------------------------------------------
--ATGTTAGTGAAACAAATTTGTTTGCCAAGTAATCGCTCTGCTTCTGTTTTTCCATACTGTATGAGTATGACACAAGAA
GGTTTGGCTATGTGAAAACGACTGTGATAATTTAAGCAAGCAAAGCCAAAGCCGCGTCGCTTTACCACACGTGCTGGATT
AGG-----------------------------------------------------------------------------
-------------------GCTTCTCTTTCTTTTCTTTTCTCCATG-----GATCATCTTGTTCCACACCACACCACACC
ACACCACGTGCAGACAGTCTGAGCTGCATGATAATGTATATCACACCTGCAGTCAGGGAGTCTGAGCTGCGTGCGTGCGT
CAACAGCGAACAAACTCAAGAAAGCGTGAGGGT-AAGGTAGCTACCCACCCACCCACCGTGTGTCAACAATCTCTCTATT
ATTGTAGTGCAAAACAACAAGAAGAAATTGCGGCCGGCAACAAATTCAGTCATAATTTACCACAGATAGATTCTGCCACA
TGTTCAAACTTCACCAGAGGAGTCAAAAGGCAAAAGCGCGAGGCGGTTCTACGCTGCTCGCGGCGGTGACCCCCTGCTTC
ATCTAGGGTTCGATCTCCGCGCCGCTGCCGGACTGCCCTTGGAGGACAGTGCCCGCGGGCGTCATGACCTCGTTGGAGGC
GTTGTGGGGCTGCGTTTGCTTCCTATGTGCTCCAGGGGAAACACCAGATTTGTACTTCCTGGATCGGATGATGGTGGCGT
GCCTGCGTCCCACCACCCCTTGGGGTGTCATCTTTGGAGTTGTAAACTGGCCGGAGTGACTAATGGATGGCTTCATGGAG
GGCCCTGGTCTCGACGTGTTCTCATGCGGTGGCAAGGGTGGAGCGGCGGGGCTTCTACCGCATCAACATCGGCTAGTCTC
GTAGTCATCATGGAGCTCTCGGTGGCGGATGCGTGTTGATGGAAGTGCGCAGGATGGTGGCGTAGTCTGGTGAGTTCATT
CTTGCAAGGTGAATGCGTTGATCTCTTCTAAAGTTGGGATGGCGAAAGAGAGCAATAGCGGATGACGGCGTAAAA
>chr3B_859
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----------------------------------------------------------CACTCAACTGATTCGTTCTATC
TCCATTTCTATCTTTCTTTTTCCTTTTTTAGCTGCATGCTTGCTCCATTTTCTTAATTATTAATCAGTCGCCGTCCGTCC
GTCTTGCTCCTCCCTCCGTCCAC--AACAGAACAGGGCAAGCCGCTCCGGCTGTATAAATAAGCTCC----CCAGCTCAC
CCACCAGCTCACCTCA-GCCTCAGCTCCCACCTTCTTC------AATCAAATCCATCCCTACACCAACACCTACACCAAC
ACCAGCACCAGCTTCAACCCAATCCACTACCTCCCTC------------------------CTCCTT-------------
------GAGA--GAGAGACACCAACCGCAACTCGGCTCAGCACG---CCGATGAAGAGCAGGAGGCAGAACGGCCGCGGA
GGAGCCGCCGCCGGCGCCATGGC---GCTGGACGGGAGCCA---CCACACCACAAGCAGCGGCTGCGGCGCCGGTGGGGT
AGGAGGAGGAGGAGGTTGC------AGCAAGATGGAGCGCAAGGAGGTGGAGAAGAACCGGCGGCTGCACATGAAGGGCC
TCTGCCTCAAGCTCTCCTCCCTCCTCC---C---CGCCTCCTCCTCAGACCACCACCTCCGCCATTATTCCACTTCTTCC
TCTTCCTCGCCGCCCTCCAGCAGCAAGGTACGTCAAAAACTAC--------------CTACCTTAAGCATCCTCCTCCAC
TTCTCTTCTCTTCTCTTGTCGTGTCCTCTTCTGTTGATTCGGCAGATTAGAGCAT-------------------------
-----------------------------------------------------------------------GCAGCTCAT
GCCGCTAATTCAC------------------------------CACTATTACCAAGCACTAGTGACATACATACATACAT
ACATACATACAGTAAAGAATACAGT-ATTTGCCTTTCTCTCTGTCTTTATAATAAAGAATACTCATAGATGTGCGGCG--
----TAATATACTCCAGT-------TTTCTGAAAACAAAAACACACACATAAATATAAATATA----CTTCTTCCCCG--
---------------------------------------------------GTCCACTC------AATTATTGTGCTCTC
TCTGTCTCTCTATCTTTCTGTCCGAAATTGGTTGGTGGTGGCGACGTGCACACCAAGATAGTGAG---------------
---------TATTTCCACACGTGGC-------------------------------------------------------
--------------------------------------------------------------------------TTTGTG
GTCAACAAAATCCTCTAAAGATC-----------------TGTCGACAATAATCATTTCACCCACCTACTCTACACAAGA
TTGCAGGCAGATTAATCC-------TCTGATTCGAGGCACATGCCTTTCTCT----TCCTCACAAAAAACTTAATTTCTT
CTGTGTGTGTCTATCAGTG--------------------GATC----------------ACAAGTACAAGATT------A
TCAGTGGATCATTTTCTTTATTTTACTACAA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GTAGCCACTACT
AGCTACTCCCTCTGTTCCTAAATATTTGTCTTTCTAGACATTTCAAATGACTACTACATACGGATGTATGTAGACATATT
TTAGAGTGTAGATTCACTCATTTTGCTTCGTATGTAGTCACTTGTTGAAATGCCTAGAAAGACAAGTATTTAGGAACGGA
GGGAGTG-------------------------------------------------------------------------
----------------------------------------------------------------------GAAAGCACAA
GATTGTTTGTGTTTGT----GTGTATGTTCGTATGTAGTCACTTGTTGAAATGCCTAGAAAGACAAGTATTTAGGAACGG
AGGGAGTGGAAAGCACAAGATTGTTTGTGTTTGTGTGTATGTGCAAATTGATCAA---CCGCATGATCTGACGACGACGA
CGGCTCTGCT---TCTGCCTCTGCAGGACGCGGCGACGCAGCTGGATCAGCTGGACAGCGCGGCGGCCTACATCAACCAG
CTCCGGGGCCGCATCGACGACCTCAAGCGCCGCAAGCAGGCCGCCCTCTC---------------CGG------------
CGGCTGCTCATCCTCCGTCTCCGCCGGCGACTACAAGCCACAG------------ACTACGGCGTCGCTGCCGGTGATCG
AGGTTAGGCACCAGGACGGGA---CTCTGGACGTGGCGCTGGCGAGCGAGGCCGGGCGGCCCTTCCGGTTGCACGAGGTG
ATGGCGGTGCTTGAGCAGGAGGGCGCTGAGGTGATCAGCGCCAGCTTCTCCGTGGTGGGCGACAAGATCTTCTACACGGT
CCACTCGCAGGCGCTCTGCCCCCGCATCGGCCTCGACGCCGGCCGCGTCGCCCAGAGGCTGCGCGGCCTCGCCGCAGCCG
CC------ACC---GTCTCGTCC------CTCCTGACATG--------------------ATCTATC-------------
---TTTTTTGCCATGGCGACCGGACCGACTGACTG---CTGACCGTAGGGTAGCTGACGCGCGGATGCAAGGGTGGTGAA
TGGAGCTGGTT------------GATTTGCACTTGTGCTGCAGATGAACAA-------TTTTTTTCATCAGTCGGGTCGG
GGCAGCAATGTTCTACGTGACGATGTTTGTTTCAGCTTAAGATTCCCTCCTTGTACCGGTGTTCTTCCTGGCTGTGGCTA
TTGGTGCTGGGT-----TTGGTTGGCTAATGCTAATGGGTGAGTGAGCTTCAGGTCTGTCTGAAATTTAGCGTGCAGCTG
CTTATGTATATACTTGTGAGAGCCTCTTTTTTTTTTGAGAAGTTGAGTTTTTCCAGAACGCCTTGAGGGACTAGATGACC
GAATGTTAATGAATGATTCAGTGAGTGCAACACAACATTCAGCTGTGATGGCATGTCTTGAAGTGTAGTTTCTTCAAAGA
TTAGCTCTGAGACTGAGAGGTTGATTGTGCCTTTGACCTTGAGGCGTAGCAGAGACGAGAGCAGCAGCATATCCGAGAAC
CAGTGCAGTGAGGGGATCGATTCCCTGAACGCCGCACCTCTTGTTTTCTCTGCGATTACACCATCTGTATATCCGAGAAC
CAGTGCAGTGAGGGGATCTGCTGCTCTGCTCTTCCTTTTCTCCATGGATATGATCATCTTGTTCCACACCACACCACGTG
CAGAGAGCCTTCCCTGAGATGCACAT--------------------CTGCAGTCAGGGAGTCTGAGCTGCGTGCGTGCGT
CAACAGGGAACAAAACCAAGAAATCGTGAGGGTAAAGGTAGCTACCCACCCACCCACCGTGTGTCAACAATCTCTCTATT
ATTGTAGTGCAAAACAACAAGAAGAAATTGCGGCCGGCAACAAATTCAGTCATAATTTATCAAAGAT----TCCGACACA
TGTTTGAAACTTACCA----------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------
>chr3D_981
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--------------------------------CACGGCAAGCCGCTCCGGCTGTATAAATAAGCTCC----CCAGCTCCA
ATCTTCATCCACACCTCGCCTCAGCTC-----------------------------------------------------
-------CCAGCTTCAACCCAATCCAATACCTCCCTCTCCCCGTCTCTACACACCTTCCTCCTCCTT-------------
------GAGGTTGAGGGACACCAAGCGCAACTCGACTCACCACT---GCAATGAAGAGCAGGAGGCAGAGCGACCGCGGA
GGAGCCGCCGCCGGCGCCATGGC---GCTGGACGGGAGCCA---CCACACCACAAGCAGCG-------------------
--------------------------GCAAGATGGAGCGCAAGGACGTGGAGAAGAACCGGCGGCTGCACATGAAGGGAC
TCTGCCTCAAGCTCTCCTCCCTCGTGC---------CCGCCTCCTCAACCCACCACCTCCGCCATTATT---CTTCTTCC
TCTTCCTCGCCGCCGTCCAGCAACAAGGTAAA------------------------------------------------
------------CTCTTGTCTTGTCTTCTTCGTCGACTTCTCTTAACTTGGCCC--------------------------
--------------------------------AAAAAGGC-------------------TGATTGATTAGCCCAACTCAT
GCCGCTGCCTGTCAGGACAGG---ACACACAGCTAATTGACCACCCA-----CGAGCACTAGTAAAACACAT--------
-----TATACAGTAGAGAATACATACAGTATATTTAC-AAAAGAAACAAGAAATAAAAG-----------GCTGCCTGTA
CACATGATAGACTACAACTGTTTTCTTTCTGAAAACAAAAAAATACGTGTGTGATGTG---AAGCACCTACTTCCCTG--
---------------------------------------------------GTTCACTGAAGATGAATTATTGTGCTCTC
-----CTCTCTGTATGTCTGCCTGAAATTGGTTGGTGGCC----------------ACGTGCTACTAGTATAGCTCCACC
AAGATTTTTTATTTCCACACGTGGCAGATT----GATTCGCTCATCAGACAGCAGTGTGC-----------------TAG
TACAAGTAGTACCACTCACTCATTCGCTCCACGTCCCGGCCGAATCGGATAAGTCTGAACAAAACTATGTATACTTCGTG
GTCAACAAAATCCTCAAAAGATG-----------------TGTTCACAATAATCATCTCACCGACCTACTTAC-----AA
AAGATTGCAGATCACTCC-------TCTGAATCGAGGCACATGCCTTTCTCTCTCTTCCACACAAAA---------TCTT
CATTTTCTATACATCAGTA--------------------GATCGACCATCTTGATTGAAACTAGTACAATATGATGGCAA
CCAGTGCATCA-ATTATTTATTTTACCACTA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GTAATAGCCACT
AAAAAGCGGG----------------------------------------------------------------------
------------------------------------------------AATGGCTAGAAATCAGTCAGCTGAATTTTTGG
TTTGAGGTCAATCGATTTGTGCACCGTTTGATGCAAAATCAATGGCCCACAGTTTTCTTCAACCTCTGGACACATCTCCT
TTCTTCATTCATTTAGAAATCGATTGACGCCGAATTCGCATCAGCTGACTGATGTGCAGCTAAACTGCTAAAAAGCACAA
GATTGGTTGTGTGTGT----GCGCGCGCGCAA------------------------------------------------
------------------------------------------------------------GCACGATCTGACGACGAAGA
G----TTGGT---TGTGCCTATGCAGGACGCGGCGACGCAGCTGGACCAGCTGGACAGCGCGGCGGCGTACATCAAGCAG
CTCCGGGCCAGGATCGAGGACCTCAAGCGCCGCAAGCAGGCCGCCCTCTC---------------CGGC---AACACCGT
TGGCTGCTCATCCTCCGTCTCCGCCGGCGACTACAAGTCACAG------------A---CGGCAGCGCTGCCTGTGATCG
AGGTGCGGCACCAGGACGGGA---CGCTGGACGTGGCGCTGGCGAGCGAGGCCGGGCGTCCCTTCCGGCTGCACGAGGTG
ATGGCGGTGCTGGAGCAGGAGGGGGCCGAGGTGGTCAGCGCCAGCTTCTCCGTCGTCGGCGACAAGATCTTCTACACGCT
CCATTCCCAGGCGCTCTGCCCCCGCATCGGCCTCGACGCCGGCCGCGTCGCCCAGAGGCTCCGCGGCCTCGCCGCCGCAG
CC------ACC---GTCTCGGCG------CTGCTGACATG--------------------ATTTTGTCTCTCTAGCATTT
TCTTTTTTTGCCATGGCGACCCGATCGACT--------------------------------------------------
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---------------------------------------------------------------------------
>chr3B_1122
CTTGCCTCCCTCCATC----------------------------------------------------------------
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------------------------------------------------------------------CGTCCTCCTTGGGA
TTGGGAGAGA-----AGAGACCAAGCGCAACTCACCTCAA--------CAATGAAGAGCAGGAGGCAGAGCGGCCGTGGA
GGAGCC------------ATGCTGCTGCCGGACGGGAACCT---CCAC------AGCAGCG-------------------
-----------------GC------AGCAAGATGGAGCGCAAGGACGTGGAGAAGAACCGGCGGCTGCACATGAAGGGAC
TCTGCCTCAAGCTATCCTCCCTCGTTCCGGC---CTCCCCCTCCTCAGACCACCACCTCAGACACTAT------------
TCTTCCTCGCCGCCGTCCAGCAACAAGGTACGTACAAGTAGAAAACTATTCTGCCTGCTACCTTAAGCATCCTCCTCTTC
TCTTCTTCC------------TCTCCTCTTGTGTTGATTCGC---------CTC--------------------------
--------------------------------CCCAGCAAAAGGCACATCTTGGCAGATTGATTCATTAGCCCAACTCAC
GCAGCTGT---------CAGG---ACACACAGCTGATTACCCACACTGTTACCGAGCA--------------------GC
A---ACACGCAGTAGAGAATACGTG-CTTTCCTCAAGAAAAAGAAAAAAAACATCAAG----------------------
-------------------------------------------TACGCGTGTGATGTG---GAGCACCTACTTCTATG--
---------------------------------------------------GTCCACTGAATTATG--------------
-----------------ATGTCTGAAATTGGTTGGTGCTG----AGTGACCACCTTCACAAGAAAAGAAAAT-TCTC---
---ATCATC-ATTTCGGCACGTGCCAGATTCGAT----------GCCATAGAAAGCGATCAGT-----------------
-----GTGGTACCACTCACTCATTTTGCTAC---CCGTCT---ATCGGATAACCCGTCCCCAATAAT----TACTTTCTG
GTCAAGAAAATTTAAAATGTTTGGTCGATCAATCCATCCCCAATAATTTGTCATACAAAATTATTT--------------
----TTGAAGATCACTCT-------CCCGATTGGGTTCACATGGAT----CT----GCCATACAAAA---------TCTG
AATATATTTTT----------------------------GATT----------------GCAAACGCAAGATGATGCCAA
CTAGTTGATCA-GTTATTTTACTAGCCATTAGAGCATGGTTAATAGTATAACTAGTTGATGGCTATATGATATTGTCAAT
GTCATCTATAGTTAACCTTATGCATGGCCAACAAGTACAATAGTAATATATGAAGATGTGCTACTTTCTTAATACATGGC
TCACTTTTCATTCTCACATAGTGCCTATGAGCATGTGTTGCAGCTGGCTCTAATTCTATAGCCGGCTCTTCTTCTCTCCA
CTTCGTATCATCAGAAAAATAATATTTTAACTCTTATAGCCTGCTTACAGAAGCTCAAGCTTATTGTACTTGCTCCTGCC
AACAGG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------ATCAATTGG---TCGCCTAATCTGAC--------
----TTAGTTGTGTG-GTGTTTTCAGGACGCGGCGACACAGCTGGACCAGTTGGACAGCGCGGCGGCGTACATCAAGCAG
CTCCGGGGCCGGATCGACGACCTGAAACGCCGCAAGCAGGCCGCCGTCTC---------------CGGC---A---CCGC
TGGCTGCTCATCCTCCATCTCCACGGGCGACTACAAGGGAGCTCCTTCAACGGCCA---CGACAGCGCTGCCGGTGATCG
AGGTGCGGCACCAGGACGGAA---CTCTGGACGTGGCGCTGGTGAGCGAGGTCGGGCGGCCGTTCCGGCTGCACGAGGTG
ATCGCCGTGCTGGAGCAGGAGGGCGCCGAGGTGGTCAGCGCCAGCTTCTCTGTCGTCGGCGACAAGATCTTCTACACGGT
CCATTCCCAGGCGTTGTACCCCCGCATCGGCCTCGAGGCCGGCCGCGTCGCCCAAGGGCTGCGCGGCCTCGCCGCAGCCG
CA------GCC---GTCTCGCCGTCGGTCCTCCTGACATG--------------------ATCTCTT-TCTCTCTTTCTT
CGTTGTTTTGCCATGGTGAC------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------
>chr3B_1125
CCTG-----CTCCGTC----------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------CGTCCTCCTTGGGA
TTGGGAGAGA-----AGAGACCACGCGAAACTCCTCTAAAAAATAAA--AATGAAGAGCAGGAGGCAGAGCGGCCGCGGA
GGAGCC------------ATGGTCGCCGACGGG---------------------------G-------------------
-----------------GC------TGCAAGATGGAGCGCAAGGACGTGGAGAAGAACCGCAGGCTGCACATGAAGGGCC
TCTGCCTCAAGCTCTCCTCCCTCGTTCCGGC---CTCCTCCTCCTCTGACCACCACCTCAGACACTAT------------
TCTTCCTCGCCGCCGTCCAGCAACAAGGTTAA------------------------------------------------
------------CTATTCTTCTGTGGGTAGG-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AG----------------------
-------------------------------------------TACGTGTGTGATGTAGCAGAGCACCTACTTCTGAA--
--------------------------------------------------------------------------------
---------------TTATGTCTGAAATTGGTTGGTGCTG----AGTGACGACCTTCACAAGAAAAGAAAATATCTC---
---ATCATC-ATTTCGGCACGTGTCTGATGGAATCAGCGGCAGT------GAAAGCGATCAGT-----------------
-----GTAGTACCACTCACTCATTCTCTCCCCGACCGTCC---ATGGGATAAGCCTAGGCGTAACTACT-----TCTGTG
GACAAGAAATTTTTCAATGTTTGGTCGATCATTCAATCCATCCCCTCAATAATGCTTTCAGCCACCAACCCAA-----GA
TTGCA-GCAGATCACTCC-------TCTGATCCGATTCACATGCCT----CT----GCCACACAAAA---------TCTG
AATATATATTT----------------------------GAT--------------------------------------
---------CA-TCTCTTTATTT---TACTG-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CTAGCTATTACC
AGCAGG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------ATTGATTGA---TCGGCAAGTCTGACAACCACG-
--ACTTGGTTGTGTCTGTGCTTGCAGGACGCGGCGACGCAGCTGGACCAGCTGGACAGCGCGGCGGCCTACATCAAGCAG
CTCCGGGGCCGGATCGACGACCTCAAGCGCCGCAAGCAGGCCGCCCTCTC---------------CGGCGGCA---CCGC
CGGCTGCTCATCCTCCGTCTCCGCCGGCGACTACAAGGCACAG------------A---CGACTTCGCTGCCGGTGATCG
AGGTGCGGCACCACGACGGAA---CTCTGGACGTGGCGCTGGTGAGCGAGGTCGGGCGGCCGTTCCGGCTGCACGAGGTG
ATCGCCGTGTTGGAGCAGGAGGGCGCCGAGGTAGTCAGCGCCAGCTTCTCCGTCGTCGGCGACAAGATCTTCTACACGCT
CCACTCCCAGGCGTTCTGCCCACGCATCGG--------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------
>chr3A_1188
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------------------------------------------ACTCGGCAATGAAGAGCAGGAGGCAGAGCGGCCGCGCC
GGTGGCCTGGCCGTGG------------------------------ACACCACAAGCAGCGGCTGCGGCGGCGGCGGCGT
CGTAGGGGGAGGAGGCTGCAGCGCCAGCAAGATGGAGCGCAAGGACGTGGAGAAGAACCGGCGGCTGCACATGAAGGGAC
TCTGCCTCAAGCTCTCCTCCCTCGTCC---CG------CCCTCCTCCGCACACCACCTCCGCCACTATT---CTTCTACT
TGTTCCTCGCCGCCGTCCAGCAACAAGGTCTGTCCCAAAATAAGTGTCTCAAGCATCAT---------------------
---TCTTCTCTTCTCTTTTGGTCTCCTCTTCTGTTGATTCGC---------CATCAAAAGAAAGGTACGCGCGTAAAAAA
CTATTCATCTCCTGTTGATTCACCAGCACCAGCAAAAGGC-------------------AGATCGATTAGCGCAACTCAT
GCCGCTGT---------C------------------------ACACTGTTACCGAGCACTAGTAACATATACTACTATGT
A---GTACACAGTTGAGAATACCGT-ATTTTTACACAAAAGAAAGGCG-------TCACTGTTGCTCATAGCTGCCTGTA
CACATAATATACTAGACCTGTTTTCTTTCTGAAAACAAATACGTACACACATATCTACTCCGGACTAATACATATGTACA
CATAATATACTGTATTTGTTTCTGAAAACAAATACATACGTACACACATAAGTCCACTCAAGATGAATTATTGTGC----
--------------------TCTCAAATTGGTTGGTGGTGGCGACGTGCACACCAAACGTGCTACTAGTATAACTCCACC
AAGATTTTT-ATTTCCACACGCGGCAGATTCATTGATTCGCTCATCAGATTCAGACAGCGATTTCATCAGTCTACTATAC
TACAACTAGTACCACTCACTCATTC-------------------------------------------------------
-----------------------------------------------------------ACCCACCTACACAA-----GA
TTGCAGGCAGATCACTCCTCTGAAATCTGAATCGAGGCACATGCCTTT---T----GTCAGACAAAA---------TCTG
ATTTCTCTTTT----------------------------GTA----------------------------------CCAA
TCAGTGGATCA-TTTCTTTATTTTACCACTA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------CTAGCTAGTAGC
CA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------CTAGAAAGGACAA
GATTGTTTGTGTGTGT----GTGCAGAACTGCAAATCAG-----------------------------------------
-----------------------------------------------TGGATCAA---TCGCACCATCTGACGACGACG-
--GCTTTGCT---TCTGTGTGTGCAGGACGCGGCGACGCAGCTGGACCAGCTGGACAGCGCGGCGGCCTACATCAAGCAG
CTCCGGGCCCGGATCGACCACCTCAAGCGCCGCAAGCAGGCCGCCCTCAC---------------CGG------------
CGGCTGCTCATCCTCCGTCTCCGCGGGCGACTACAAGGGAGCTCCTTCAACTTCA------ACGGCGCTGCCGGTGATCG
AGGTGCGGTGCCAGGACGGGTCGGCGCTGGACGTGGCGCTGGCGAGCGAGGCCGGGCGTCCCTTCCGGCTGCACGAGGTG
ATCGCGGTGCTGGAGCAGGAGGGCGCCGAGGTGGTCAGCGCCAGCTTCTCCGTCGTGGGCGACAAGATCTTCTACACGGT
CCACTCCCAGGCGCTCTGCCCCCGCATCGGCCTCGACGCCGGCCGGGTCGCCCAGAGGCTCCGCGGCCTCGCCGCGGCCG
CA------GCCACCGTCTCGACG------CTGCTGACATGCTGATCTCTCTATGTCGTCTATCTATC-------------
---TTTTTTGGCATGGCGACCGAACCGCCTGAGCCTGACTGACCGGAGGCTAGCTGATGCTAGATGGA------------
---------TT------------AATTTGCAGCTGTGCTGC-----GGGTAGTTGATCTTTTTTTCATCGGTCGGGTCAG
GGCAGCAATGTTCTCCAT---GATGTTTGTTTCAGCTTAA----------------------------------------
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>chr3D_1275
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--------------------------GCAAGATGGAGCGCAAGGACGTGGAGAAGAACCGCAGGCTGCACATGAAGGGCC
TCTGCCTCAAGCTCTCCTCCCTCCTCC---------CCGCCTCATCCGCACACCACCTCCGCCACTATT---CTTCTACA
TCTTCCTCGCCGCCGTCCAGCAACAAGGTACGTAAAAACA----------------------------------------
------------------------------CTCTTGATTCGC---------CCC--------------------------
--------------------------------CAAAAGGC-------------------AGACTAATTTGCTCAACTCAC
GCAGCTGT---------CCGGGGAACAGACACCTGATTAACCACACTCTTACCGATCA--------------------GT
A---ACACGCAGTAGAGAATACACT-ATTCTATTCAT-ACTAGTACCAAAAAATCTCACTGTTACCCATAACAA------
----------------------------------------------GTGTGTGATGGG---GAGCACCTACTTGTGTG--
---------------------------------------------------GTCCACTGAATTA----------------
-----------GTACGTATGTCTCAACTTGGTTGGTGGAGACAAAGTGACGACGTTCACAAGAAAAAG-AATATCTC---
---ATCATC-ATTTCGGCACGTGTCAGATTCGGTGGCAGTAGGAGCCATAGAAATTGATCAGC-----------------
-----GTAGTACCACTCACTCATTTGGATAACAATTATTTTGTGGTC---------------AATTTTTTTTACTTTGTT
GTAAAGAAAAATTAAAATGTTTGGTCGGTGAATCCATCCCCAACA--ATTAATCCTTTCAACTACCA--------ACCC-
AAGATTGAAGATCACTCC-------TCTGATTCGATTCACATGGAC----CT----GCCATACAAAA---------TCTG
AATATATTTTT----------------------------GATT----------------GCAAGTGCAAGATGATGCCAA
TCAGTGGATCG-TCTGTTTTTTGGACTACTA-------------------------------------------------
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--------------------------------------------------------------------CTAGCTACTACC
AGCAGG--------------------------------------------------------------------------
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----------------------------------------------ATTGATTGA---TCGGCTAATCTGACAACCACG-
--AC-TTGGT---TCTGTTTGTGCAGGACGCGGCGACGCAGCTGGACCAGCTCGACAGCGCGGCGGCGTACATCAAGCAG
CTCCGGGGCCGGATCGACGACCTCAAGCGCCGAAAGCAGGCCGCCCTCTC---------------CGGCAACA---CCGT
TGGCTGCTCATCCTCCGTCTCCGCCGGCGACTACAAGTCACAG------------A---CGGCAGCGCTGCCTGTGATCG
AGGTGCGTCACCAGGACGGCA---CCCTGGACGTGGCTCTGGCGAGCGAGGCCGGGCGGCCGTTCCGGCTGCACGAGGTG
ATCGCCGTGCTGGAGCAGGAGGGCGCCGACGTGGTCAGCGCCAGCTTCTCTGTAGTCGGCGACAAGATCTTCTACACTGT
CCATTCCCAGGCGCTCTGCCCCCGCATCGG--------------------------------------------------
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>chr3A_1600
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-------------------------------------------------------------------------------A
TCAGTGGATCA-TTTCTTTGTTTTACT-----------------------------------------------------
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------------------------------------------------------------------------TAGCCACT
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----------------------------------------------------------------------AAAAGCACAA
GATTGTTTGTGTGTGC----GC----------------------------------------------------------
--------------------------------------------AAATTCATCAAT--TCGCATGGTCTGACGACGACG-
--GCTTTGGT---TGTGTCTGTGCAGGACGCGGCGACGCAGCTGGATCAGCTGGACAGCGCGACGGCCTACATCAAGCAG
CTCAAGGCCCGCATCGACCACCTCAAGCGCCGCAAGCAGGCCGTCTTCTC---------------TGGCGGCA---CCGC
TGGCTGCTCATCTTCAGTCTCCGCCGGCGACTACAAGGCACAG------------A---CGGCCGCCCTGCCGGTGATCG
AGGTTCGGCACCAGGACGGAA---CGCTGGACGTGGCGCTGGCGAGCGAGGCCGGGCGGCCGTTCCGGCTGCACCAGGTG
ATCGCCGTGCTGGAGCAGGAGGGCGCCGAGGTGGTCAGCGCCAGCTTCTCCGTCGTCGGCGATAAGATCTTCTACACGCT
CCACGCCCAGGCGCTCTGCCCCCGCATCGGCCTCGAGGCCGGCCGCGCCGCCCACCGGCTCCGCAGCCTCGCCGCAGCAG
CC------GCC---GTCTCGTCGTCGGTCCTCCTCACATG--------------------ATCTCTC-TCTTTGTTGCTT
TTT-----------------------------------------------------------------------------
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>SNPs
SSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------S--
-------S--S--S--------------SS---------------------S-------------S--------------
-----------------SS-SS-SS------S----------------------------------SSSSS---------
----------S------S---S----SS-SS-SSSS-SSSSSSS------------------------------------
-------------------------SSSSSS------------------------------------S---S-----SSS
---S----------------S-------------------SS--------------------------------------
-----------------------------------------SSS------------------------------------
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-------------------------------SSS----------------------------------------------
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-------------S-SS-S-------------------------------------------------------------
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----------------------------------------------------------------------S---S-----
----------------S-------------S----S--------------------------------------------
-----S-------SSS---SSSSSSSSSSSSSSSSSSSS-----------------------------------------
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-----------------------------------------------------------------------S--SS----
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--------------------------------------------------------------------------S-----
----------------SSSS------------------------------------------------------------
--------------------------------------------------------SS--------S-------------
-------------------------------------------------------------S------------------
---------------S----------------------------------SSSSSSSSSSSSSSS---------------
------------------------------------------S-------------------------------------
----------S---------------------------------------------------------------------
------S----------S--------S--------------------------------S--------------------
------------------------------S-------------------------------------------------
--SSSSSS------------------------------------------------------S--S--------------
----------------------S-------S-S---------------------------------------SS----S-
----------SSSSSSSSSSSSS-S-----------------SSS-------------------------S-S-------
---------------S------------------------SSSSSS----------SS----------------SSSSSS
--S-SSS-S-SSSSSSS------SS------SSSSSSSSSS---------------------------------------
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--------S----SS-SSSSSSSSSSS---SSS-S-SS--S---SSSS-SSSSSSSSSSSSSS--SSSS-SSSS---SS-
SSSSSSSSS-SSSSS-S-S-SSSS-SS-SSS--SSS-SSSS-SSSSS-SSSSS-SSSS-SSSSS-SS--SS-S-SS--SS
SS------------------------------------------------------------------------------
----------------------S----SSSS--S-------------------------------------------SSS
SSSSS-SSSSSSSSSSSSS--SS-SSSSSSSSSSSSSSSSSSSSSS----------------------------------
------S-------SS-------S--------------------------------------------------------
-----------------------------------------------------------S--S----SSSS--S-S----
----SS--SS-S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_644
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----------------------------------------------------------------AGGATCATGGATGGGT
CCCA----------------------------------------------------------------------------
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>reverse_4464
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---------------------------------------------------------------ACCACACGTGCTGGATT
AGG-----------------------------------------------------------------------------
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