>input_sequence_50703
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-------------------------------------------CTATAAATC-----CCCCGCCGCGCTCTCACTCGGCA
TCAGTCACCTTCAAACCCAATCCAGGAAGCAAAGCTACTCCCTCTCCCTCCCATGGCCAACAGCTGCGCCAGCCTCGACA
CCATCTGGTCCCACCTCCCCGCGCCCGCCCCGGCTCCCTGGCCATACGCCACCTGGTTCTCCCCCGCCGCCGCCGCCTTC
GAGAACGACGCGCTCGCCACCGCGCTCGCTCG------CGCCTCCGCCTCCGCCTCCGCTTCGCCGTCGTCCCCGACCCC
TTCCTCCTCCACCACCACCACCTCCTCCGCGTCCGAGCTGTCCTGCGCCCCGTACGACGCGCCCGCGCTGCCCGCCGTAA
GCCGCAGGCCAGGCTCGGCGGCGGCGGCGGCGGCGCGGCACTGCACGGGCCGCGTCTCCAAGCGGAAGCCCCGGGTGTCC
CGCCGCCCGCAGACCACGTACATCACCGCCGACCCGGCCAACTTCCGTCGCATGGTGCAGGAGATCACCGGCTACGCCCT
TCCCGGCGCGGAGAGAGCCTCCGTCGTGCCAGCGCCGCCCAGGCCGGACCCGCTCGCTTTCGTGCTCCCGACGCTGGACA
CGTCCGCCTGCTTCTTGCTGGACCAGGACCAGGCGCCCTCGCTGCCGCAGCAGCGTTGGGAGGACAAGACGTCGGGCGGA
GCGGCGGCGGCGACAGCAATGCCC--------------------------------------------------------
------------------------GCGATGGCGGACGAGTCGTCGCTGCGGCTGATGCAGGAGCTGGAGGCCATGGTGAG
CGGGCCGCCCGCCGTGTCCTCCTTCCCGACGTTGGAGAGCTGGGGGATGATCTGATGTTCTCAAGGATTAGTC-TTTTTC
CTTTTCTTATGC----TAGCGCTTTTAGTGTCTTGTCGGACCTCCTGATCCCGATGTGAGGATCAGATGGTCGGTAGTGG
TCGATGGTTTAGCTCGATCATGGAGGGAGTAGCCTAGATGCTGTCGTGGGAGACCCTTTTTGTTGAGATCGTAGCTTCGT
AGGAGTTTTGTAAAGTGGATTAGTGGCGGTCAATGATGATGTTAATCACTTGTGGTCTAATCCGTCC-GTAGTGGTACTG
CATTACAATTTACAAAATCTTGTGCTGGTGTTATGGTCCTAAACGTGCTCTGCCTTTCAGCTACTCCGTACCGTTTTTGA
CAGAGGGATGGTCATGGATGGAGCAACGCACGCAACGTAGATGAGCAGAGATTTGGAGCGTTGCCATCGTGCGCTGC-GA
CGTGAAGG------------------------------------------------GTGGGCGACTCCTGCTGGTTGTTA
TTTGCTATGCTTCTA--------TTTCTGTCTAAGGCATTGAC-----GGACCCACATGCAGATGCAGGTATGGAGTGAA
AAGTCAGCTGGTATTCAGAGTTTAACGGAGAGTTAACAGCAGATGACGGAAAGTACCCAGAATACAAGTTGTAGAACCGA
TTTATGT-----------------------------------------------------CATTTTTTTATGTTTGTGTA
TGAATATGTACATCTAGTGCAAGTTTATATATCAAAAGTGTA--------------------------------------
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>chr3D_1_TraesCS3D01G193700
GATGCATCTACGACACAAACAAGTGAGGGTGTCCTGTAATTCCAAACAAGTTCAATAAGGTTCTGACAGTGACATATAGT
CTG--CACACACACACATTCGACAGTCAAAAAATGCAGTAGTACTAGTTAGTAGCAGGAATAAGATCACATGTTCAGCTG
GTGATGCACGAGGCAAGATAGATAAGTCAGAAAACAATTGATCTTCTTCCAAACTTCAATGAGATGTAGCCTTGGGGTCT
TAGAAGTTGTCATGTGATCGATGAGTTTTGTTTGCTGTTTAGGTCCACTCAACACTTGAACTAGCTTGCTGGTGACAATT
GCAAGCCGGCCGGCCGGCTGGACGGTCGGCCACTCGGACGGCACCACAAACAGATCAATCCTATTTATAGATGCGAACTG
CTGAAGCTCGGCATAGAACGAGAGTTTGGTGAGAGAGGCGTGCTCACGGTTGCATCCATGACGGACAACTGGGCCGGTGC
GATGGGCTTCTTCGTGGGGATGCTAGCACGGCTGATCTGCGAGATCCCCGGCGGC-GGGGCCCGGAGGTTGGGGGCTGCT
GCTCATGGCGGCGCATGCTGGCTGGAAGACGCGAGGCGTGCTGGGGTGGCGACGGGGATCCGCGGCGGGAGGTCGGCGAC
GGCGAGCTGGCGCGGTTCGGAGGCGACGCGAGGGAGGAGGCGAGGTGCACGGGCGGCACACCGGCGGCGGCGGCGGTGGT
TAGTGGATGAGGAAGGTCGTGGGGTGCGGTAGTGGAAAACGACAAAAGTAGATAGAGATGAACCGAGCATTTTCTTTACG
ACGTGAGTTGGCTGTCGCGTAGCACGTGTGGCCAGGACGTGATCGGACGGTCAGGAGCCGGCCGCTCGAGACGCTTAAAT
AGTGCGTAAGCACTTTTTAGATTTTAGGAAGAGAAATAGAGTATACTCCTACTCCGCTGGTTCTGGGTACGTCCACCATT
CCGCGGCCAGCGCCATCCTGTATGGGTATGCCGCTCGCTCACTCTATAAATC-----CCCCGCCGCGCTCTCACTCGGCA
TCAGTCACCTTCAAACCCAATCCAGGAAGCAAAGCTACTCCCTCTCCCTCCCATGGCCAACAGCTGCGCCAGCCTCGACA
CCATCTGGTCCCACCTCCCCGCGCCCGCCCCGGCTCCCTGGCCATACGCCACCTGGTTCTCCCCCGCCGCCGCCGCCTTC
GAGAACGACGCGCTCGCCACCGCGCTCGCTCG------CGCCTCCGCCTCCGCCTCCGCTTCGCCGTCGTCCCCGACCCC
TTCCTCCTCCACCACCACCACCTCCTCCGCGTCCGAGCTGTCCTGCGCCCCGTACGACGCGCCCGCGCTGCCCGCCGTAA
GCCGCAGGCCAGGCTCGGCGGCGGCGGCGGCGGCGCGGCACTGCACGGGCCGCGTCTCCAAGCGGAAGCCCCGGGTGTCC
CGCCGCCCGCAGACCACGTACATCACCGCCGACCCGGCCAACTTCCGTCGCATGGTGCAGGAGATCACCGGCTACGCCCT
TCCCGGCGCGGAGAGAGCCTCCGTCGTGCCAGCGCCGCCCAGGCCGGACCCGCTCGCTTTCGTGCTCCCGACGCTGGACA
CGTCCGCCTGCTTCTTGCTGGACCAGGACCAGGCGCCCTCGCTGCCGCAGCAGCGTTGGGAGGACAAGACGTCGGGCGGA
GCGGCGGCGGCGACAGCAATGCCC--------------------------------------------------------
------------------------GCGATGGCGGACGAGTCGTCGCTGCGGCTGATGCAGGAGCTGGAGGCCATGGTGAG
CGGGCCGCCCGCCGTGTCCTCCTTCCCGACGTTGGAGAGCTGGGGGATGATCTGATGTTCTCAAGGATTAGTC-TTTTTC
CTTTTCTTATGC----TAGCGCTTTTAGTGTCTTGTCGGACCTCCTGATCCCGATGTGAGGATCAGATGGTCGGTAGTGG
TCGATGGTTTAGCTCGATCATGGAGGGAGTAGCCTAGATGCTGTCGTGGGAGACCCTTTTTGTTGAGATCGTAGCTTCGT
AGGAGTTTTGTAAAGTGGATTAGTGGCGGTCAATGATGATGTTAATCACTTGTGGTCTAATCCGTCC-GTAGTGGTACTG
CATTACAATTTACAAAATCTTGTGCTGGTGTTATGGTCCTAAACGTGCTCTGCCTTTCAGCTACTCCGTACCGTTTTTGA
CAGAGGGATGGTCATGGATGGAGCAACGCACGCAACGTAGATGAGCAGAGATTTGGAGCGTTGCCATCGTGCGCTGC-GA
CGTGAAGG------------------------------------------------GTGGGCGACTCCTGCTGGTTGTTA
TTTGCTATGCTTCTA--------TTTCTGTCTAAGGCATTGAC-----GGACCCACATGCAGATGCAGGTATGGAGTGAA
AAGTCAGCTGGTATTCAGAGTTTAACGGAGAGTTAACAGCAGATGACGGAAAGTACCCAGAATACAAGTTGTAGAACCGA
TTTATGT-----------------------------------------------------CATTTTTTTATGTTTGTGTA
TGAATATGTACATCTAGTGCAAGTTTATATATCAAAAGTGTAATTAACTCTTAGAACAAATAGCTGCATGGTTCTATGGC
GGTTTTACAGCCCTAGGATGACGTGTTAATGCTATTTGTAGTGTGGCTTTTCTTACCAGGCAGACAGGGACACACCACTC
TCT-----------------------------------------------------------TTTCTTTC--------TT
TTTTTTTTGACAGAAGGGACACACCACTCTCATGACAGCGCACACCCGCAGGAGTGGCGATGCCGGACCATCACAGATTT
TATGAAGTTTGTGTAAAACGAACTCGTGGACTCGCCTAGTGGAGACAGAGTCAAGTGACGGCACACTGAGCTTGCGTCTG
CGTGCATGATTTTGTTGACAAACAGACAGCAGCTGCCCAACTGCTACTTCTTTCTTTCTTTGTCAACGACATAGTTTGGA
CAACCTTGCAGGCACATGAATTTCACTCTGACATGACACAAGCTCTCAACAATACAGGCTACCCGAAGCCCAGGCCAACC
TTCCTACCCACCATTCTGTCTGTACCATTTTTTTTTTGAAACGGAGGCATAAGATTTGCCTCATCTATTAAATAAGGAGA
GAATAGAGTTTAGATTTTTACAGGACACCCCATACAAGCGACATGACAATTACTCACACACAATGATAGTCCCTAGCTTC
TTGGCGCCGGCAGTAACCCATAACTTTGCCTCACCAATGATGGTTTGGAGGAGAATAGGCGGTGGCGCAGATTTTTGCCG
-AAATACCCTAGCATTTCGCTCGTTCCAAATGGTCCAAGAGGTGAGCATGACGAGAGAGGACATGGCATGCCAATTCGGG
TTTCGGTCATCGGTACGCTTGACCCACCACTCCTTGACGGATTCATCAAGATGCCAATCGGGAATGTTGACGTGATGTAG
CCCAAGCTTCTCAATGATAGATCTCCAAAGCCTAAGAGTGTAACGACACTTGAAGAAGAGGTGTGGCCCCGTTTCTTGCT
CTCTGTTGCATAGTGGACAAAGACCACAATTGACCCAACCACGCTTCTCCAGACGATCGGCGGTCCAAAT
>chr4D_1
GATGCATCTACGACACAAACAAGTGAGGGTGTCCTGTAATTCCAAACAAGTTCAATAAGGTTCTGACAGTGACATATAGT
CTGCACACACACACACATTCGACAGTCAAAAAATGCAGTAGTACTAGTTAGTAGCAGGAATAAGATCACATGTTCAGTTG
GTGATGCACGAGGCAAGATAGATAAGTCAGAAAACAATTGATCTTCTTCCAAACTTCAATGAGATGTAGCCTTGGGGTCT
CAGAAGTTGTCATGTGATCGATGAGTTTTGTTTGCTGTTTAGGTCCACTCAACACTTGAACTAGCTTGCTGGTGACAATT
GCAAGCCGGCCGGCCGGCTGGACGGTCGGCCACTCGGACGGCACCACAGACAGATCGATCCTATTTATAGATGCGAACTA
CTGAAGCTCGGCATAGAACGAGAGTTTGGTGAGAGAGGCGTGCTCACGGTTGCATCCATGACGGACGACTGGGTCGGTGC
GATGGGCTTCTTCGTGGGGATGCTAGCACGGCTGATCTGCGAGATCCCCGGCGGC-GGGGCCCGGAGGTTGGGGGCTGCT
GCTCGTGGCGGCGCATGCTGGCTGGAAGACGCGAGGCGTGCTGGGGTGGCGACGGGGATCCGCGGCGGGAGGTCGGCGAC
GGCGAGCTGGCGCGGTCCGGAGGCGGCACGAGGGAGGAGGCGAGGTGCACGGGTGGCACACCGGCGGCGGCGGCGGCGGT
TAGTGGATGAGGAAGGTCATGGGGTGCGGTAGTGGAAGACGACAAAAGTAGATAGAGATGAACCGAGCATTTTCTTTACG
ACGTGAGTTGGCTGTCGCGTAGCGCGTGCGGCCAGGACGTGATCGGACGGTCAGGAGCCGGCCGCTCGAGACGCCCAAAT
AGTGCGTAAGCACTTTTTAGATTTTAGGAA--------------------------------------------------
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>chr7D_1
GATGCATCTACGACACAAACAAGTGAGGGTGTCCTGTAATTCCAAACAAGTTCAATAAGGTTCTGACAGTGACATATAGT
CTG----CACACACACATTCGACAGTCAAAAAATGTAGTAGTACTAGTTAGTAGCAGGAATAAGATCACATGTTCAGCTG
GTGATGCACGAGGCAAGATAGATAAGTCAGAAAACAATTGATCTTCTTCCAAACTTCAATGAGATGTAGCCTTGGGGTCT
CAGAAGTTGTCATGTGATCGATGAGTTTTGTTTGCTGTTTAGGTCCACTCAACACTTGAACTAGCTTGCTGGTGACAATT
GCAAGCCGGCCGGCCGGCTAGACGGTCGGCCACTCGGACGGCACCACAGACAGATCGATCCTATTTATAGATGCGAACTG
CTGAAGCTCGGCATAGAACGAGAGTTTGGTGAGAGAGGCGTGCTCACGGTTGCATCCATGACGGACGACTGGGCCGGTGC
GATGGGCTTCTTCGTGGGGATGCTAGCACGGCTGATCTGCGAGATCCCCGGCGGC-GGGGCCCGGAGGTTGGGGGCTGGT
GCTCGTGGCGGCGCATGCTGGCTGGAAGACGCGAGGCGTGCTGGGGTGGCGACGGGGATCCGCGGCGGGAGGTCGGCGAC
GGCGAGCTAGCACGGTCCGGAGGCGGCGCGAGGGAGGAGGCGAGGTGCACGGGCGGCACACCGGCGACGGCGGCGGCGGC
GG------------------------------------------------------------------------------
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-------------------TTAGTGGATGAGGAAGGTCGTGGGGTGCGGTAGTGGAAGACGACAAAAGCAGATAGAGATG
AACCGAGCATTTTCTTTACGACGTGAGTTGGCTGTCGCGTAGCGCGTGCGGCCAGTTTGTGATCGGACGGTCAGCAGCCG
GCCGC---------------------------------------------------------------------------
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--------------------------------------------------------------TCGAGACGTC--------
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--------------------------------------------------------------------CAAATAGTGCAT
AAGCACTTTTTAGATTTTAGAAA---------------------------------------------------------
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>chr4A_369
CAGT----------------------------------------------------------------------------
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------------------------------------------------------TCGATCCTATTTATAAAGGCGAACTG
CTGAAGCTCGGCATGGAACGAGAGTTTGGTGAGAGAGGCGTGCTCACGTTTGCATCCATGACGGGCGACTGGGCCGGTGC
GATGGGCTTCTTCGTGGGGATGCTGGCAAGGCTTATCTGCAAGATCCCCGGTGGCGGGGGCCCGGAGGTTGGGGGCTGCT
GCTCGTGGCAGCGCATGCCGGCTGGAAGACGTGAGGCATGCTAGGGTGGCGACGGG-ATCCACGGCAGGATGTCGACGAC
GACGAGTTGGCGCAGTCTAGAGGCGGCGCGAGGA----------------------------------------------
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---------------------------------------------------------GGGAGGCCAGGTGCACGAGCGGC
ACACGGGCGACGACAGCGATTAGTGGATGAGGAAGGTCGTGGGGTGCGGTAGTGGAAGACAACAAAAACAGATAGAGATG
GACCAAGCGTT-TCTTTATGACGTGAGTTGGTTGTCACGTAGCGCGTGCGGCTAGGACGTGATCGGGCGGCCAGGAGCCG
GCCGC---------------------------------------------------------------------------
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--------------------------------------------------------------TTGAGATGT---------
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-------------------------------------------------------------------TCAAATAATGTGT
AAGCACTTTTTAGATTTTAGGAAAAAATA---------------------------------------------------
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>chr3B_927
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-------------------------------------------------TACTCCGCTGGCTCTGGGTACGTCTACCATT
CCGCGGCCAGCGCCATCCTGTAAGTGTATGCCGCTCACTTCCTCTTCCTCTATAAATCCCCGCCGCGCTCTCCCTCGGCA
TCAGTCACCTTCAAACCCAATCCAGGAAGCAAAGCTACTCCCTCTCCCTCCCATGGCCAACACCTGCGCCAGCCTCGACA
CCGCCTGGTCCCACCTCCCCGCGTCCGCCCCGGCTCCCTGGCAATACGCCGCCTGGTTCTCCTCTGCCGCCGCCGCCTTC
GAGAACGACGCGCTCGCCACCGCGCTCGCTCGCGCCTCCGCCTCCGCC------------TCGCCCTCCTCCCCGACCCC
TTCCTCCTCCTCCACCACCACCTCCTCCGCGTCCGAGCTGTCCTGCGCCCCGTACG---------------------TAA
GCTGCAGGCCAGCCTCC------GCGGCGGCGGCGCGGCACTGCACGGGCCGCGTCTCCAAGCGGAAGCCCCGGGTGTCC
CGCCGCCCGCAGACCACGTACATCACCGCCGACCCGGCCAACTTCCGTCGCATGGTGCAGGAGATCACCGGCTACGCCCT
TCCCGGCGCGGAGAGAGCCTCCGCCGTGCCAGCGCCGCCCAGGCCGGACCCGCTCGCTTTCGTGCTCCCGACGCTGGACA
CGTCCGCCTGCTTCTTGCTGGACCAGGGCCAGGCGCCGTCGCTGCGGCAGCAGCGTTGGGAGGACAAGACGTCGGGCGGA
GCGGCGGCGGCGACAGCAATGCCC--------------------------------------------------------
------------------------GGGATGGCGGGCGACTCGTCGCTGCGGCTGATGCAGGAGCTGGAGGCGATGATGAG
CGCGCCGCCCGCCGTGTCCTCCTTCCCGACGTTGGAGAGCTGGGGGATGATCTGAACTTCTCAAGGATTAGTC-TTTTTC
CTTTTCTTATGC----TAGCGCTTTTAGTGTCTTGTCGGTCCTCCCGATGTGAG-----GGATCAGATGGTCGGTAGTGG
TCGATGGTTTAGCTTGATCATGGAGGGAGTAGCATAGATGCTGTCGTGGGAGATCCTTTTTGTTGAGATCGTAC-----T
AGGAGTTTTGTAAAGTGGATTAGTGGCGGTCAATGATGATGTTAATCACTTGTAGTCTAATCCA---AGTAGTAGTACTG
CATTACAATTTACAAAGTGTTGTGCTCGTGTTATGGTCTTAAACGTGCTCTGCCTTTCACCTACTCCGTACT-TTTTTGA
CAGAGGGATGGTCATGGATGGAGCAACGCACGCAACGTAGATGACCAGAGATTTGGAGCGTTGCCATCGTGCGCTGCAGA
CATAAACGGTGGACGA----------------------------------------------------------------
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>chr3A_929
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---------------------------------------------------CTCCGCTGGCTCTGGGTACGTCCACCATT
CCGCGGCCAGCGCCATCCTGT------ATGCCGCTCACTCCCTCTATAAACC-----CCCCGCCGCGCTCTCACTCGGCA
TCAGTCACCTTCAAACCCAATCCAGGAAGCAAAGCTACTCCCTCTCCCTCCCATGGCCAACAGCTGCGCGAGCCTTGACA
CCACCTGGTCCCACCTCCCCGCTCCCGCCCCGGCTCCCTGGCCATACGCCGCCTGGTTCTCCCCCGCCGCCGCCGCCTTT
GAGAACGACGCGCTCGCCACCGCGCTCGCTCG------CGCCTCCGCC------------TCGCCGTCCTCCCCGACCCC
TTCCTCCTCCACGACCACCACCTCCTCCGCGTCCGAGCTGTCCTGCACTCCGTACGACGCGCCCGCGCTGCCCGCCGTAA
GCTGCAGGCCAGCCTCGGCG---GCGGCGGCGGCGCGGCACTGCACGGGCCGCGTCTCCAAGCGGAAGCCCCGGGTGTCC
CGCCGCCCGCAGACCACGTACATCACCGCCGACCCGGCCAACTTCCGTCGCATGGTGCAGGAGATCACCGGCTACGCCCT
TCCCGGCGCGGAGAGAGCCTCCGCCGTGCCAGCGCCGCCCCGGGCGGACCCGCTCGCTTTCGTGCTCCCGACGCTGGACA
CGTCCGCCTGCTTCTTGCTGGACCAGGGCCAGGCGCCCTCGCTGCCGCAGCAGCGTTGGGAGGACAAGACGTCGGGCGGA
GCGGCGGCGGCGACAGCAATGCCC--------------------------------------------------------
------------------------GCGATGGCGGACGACTCGTCGCTGCGGCTGATGCAGGAGCTGGAGGCCATGGTGAG
CGCGCCGCCCGCCGTGTCCTCCTTCCCGACGTTGGAGAGCTGGGGGATGATCTGAAGTTCTCAAGGATTAGTCTTTTTTC
CTTTTCTTATGCTACGTAGCGCTTTTAGTGTCTTGTCGGTCCTCCCGATGTGAG-----G-ATCAGATGGGCGGAGGTGG
TAAATGAT---------------------------------------------TCCTTTTTGTTGAGATCGTAGTA--GT
AGGAGTTCTGTAAAGTGGATTAGTGGCGGTCAATGATGATGTTAATCACTTGTAGTCTAATCCAAGTAGTAGTAGTACTG
CATTACAATTTACAAAGTGTTGTGCTGGTGTTATGGTCTTAACCGTGCTCTGCCTTTCAGCTAC----------------
---------------------------GCACGTAACGTAGATGAGCAGAGATTTGGAGCGTTGCCATCGTGCGCTGC-GA
CGTGAACGGTGGACGAGATTAGAAAGAACAAGAGTTAATTGCTTTTTTTTTGAAGAGTGGGCGACTCCTGCTGGTTGTTT
CTGGCTATGCATCTACTCCTATTTTTCTATCTAATACATTGACATGTGGGACCCACATGCAGATGCAGGTATGGAGTGAA
AAGT-----------------------------TACCAGCAGACGACGAAAAGTACCCGGAACACAAGTTGTAGAACCGA
TTTATGTACCCCGGGACATGTGGTTAGCAAATTCAAAATTCACGTAGAATGGATTTATGTCA-TTTTTTAAGTTTATGTA
TGAATATGTACATCTAGTGCAAGTTTATATATCAAAAGTGTAATTAACTCTTAGAACAAATAGCTGCATGGTTCTATGGC
TGTTTTACAGTCGTAGGATGACGTATTAATGCTATTTGTAGTGTGGCTTTCCTTACCAGACAGACCGGGACACACCACTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC--------TC
TTTTTGACAGAAGAAGGGACACACCACCCTCATGACAGCGCACACCCGCAGGAGTGGCGGTGCCGGGCCATCACAGATTT
TATGAAGTTTGTGTAAAACGAACTCGTGGACTCGCCTAGTGGAGACAGAGTCAAGTGACGGCACACTGAGCTTGCGTCTG
CGTGCATGATTTTGTTGACAAACAGACAGCAGCTGCGAAACTGCTGCTTCTTTCTTTCTTTGTCAACGACATAGTTTGGA
CAACCTTGCAGGCACATAAATTTCACT-TGACATGACACAAGCTCTCAACAATACAG-----------------------
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>chr3B_2224
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----AAGG------------------------------------------------GTGGGCGACTCTTGCTGGTTGTTA
TTTGCCATGCTTCTA--------TTTCTGTCGAAGGCACTGACATGTGGGACCCACATGCTGGT-CAGGTATGGAGTGAA
AAGTCAGCTGGCATTCAGAGTTAACAGGAC------------------GAAAGTACCCAGAACACAAGTTATAGAACCGA
TTTATGT-----------------------------------------------------CA-TTTTCTAAGTTTATGTA
CAAATATGTACATCTAGTGCAAGTTTCTGTATCAAAAGTGTAATCAA-TCTTAGAACAAATAGCTGCATGGTTTTATGGC
GGTTTTACAGCCGTAGGATGACGTGTTAATGCTATTTGTAGTGTGGCTTTTCTTACCAGACAGACCGGGACACACCACTC
TTT-----------------------------------------------------------TTTCTTTTCTTTTCTGTT
TTTTTTTTGACAGAAGGGACACACCACTCTCATGACAGCGCACACCCGCAGGAGTGGCGGTGCCGGACCATCACAGATTT
TATGAAGTTTGTGTAAAACGAACTCGTGGACTCGCCTAGTGGAGAC----------------------------------
-------GATTTTGTTGACAAACAGACATCAGCGACCCAACTGCTACTTCTTTCTTTCTTTGTCAACGATATACGTT---
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>chr6B_2943
CCATTT--------------------------------------------------------------------------
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-----------------------------TTTTTTTCGAAACGGAGGCATAAGATTTGCCTCATCTATTAAATAAGGAGA
GAATAGAGTTTAGAGTTTTACAGGACATCCCATACAAGCGACATGACAATTACTCACATACAATGATAGTCCCTAGCTTC
TTGGCGCCGGCAGTAACCCATAACTTTGCCTCACCAATGATGGTTTGGAGGAGAATAGGTGGTGGCGCAAATTTTTGCCG
-AAATACCCTAGCATTTCGCTCGTTCCAAATGGTCCAAGAAGTGAGCATGACGAGAGAGGACATGGCATGCCAATTCGGG
TTTCGGTCATCGGTACGCTTGACCCACCACTCCTTGACGGATTCATCAAGATGCCAATCGGGAATGTTGACGTGAGGTAG
CCCAAGCTTCTCGATGATAGATCTCCAAAGCCTAAGAGTGTAACGACACTTGAAGAAGAGGTGTGGCCCCGTTTCTTGCT
CTCTCTTGCATAGTGGACAAAGACCACAATTTACCCAACCACGCTTCTCCAATCGATCGGCGGTCCAAAT
>chr7D_2946
TTTTTT--------------------------------------------------------------------------
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--------------------------------TTTTCAAAACGGAGGTATAAGATTTGCCTCATCTATTAAATAAGGAGA
GAATAGAGTTTAGATTTTTACAGGACACCCCATACAAGCGACATGACAATTACTCACACACAATGATAGTCCCTAGCTTC
TTGGCGCCGGCAGTAACCCATAACTTTGCCTCACCAATGATGGTTTGGAGGAGAATAGGCGGTGGCGCAAATTTTTGCCG
-AAATACTCTAGCATTTCGCTCGTTCCAAATGGTCCAAGAGGTGAGCATGACGAGAGAGGACATGGCATGCCAATTCGGG
TTTCGGTCATCGATACGCTTGACCCACCACTCCTTGACGGATTCATCAAGATT-CAATCGGGAATGTTGACGTGAGGTAG
CCCAAGCTTCTCAATGATAGATCTCCAAAGCCTAAGAGTGTAACGACACTTGAAGAAGAGGTGTGGCCCCATTTCCTACT
CTCTGTTGCATAGTGGACAAAGACCACAATTGACCCAACCACGCTTCTCCAGACGATCGGCGGTCCAAAT
>chr2D_2946
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---------------------------TTTTTTTTTCGAAACGGAGGCATAAAATTTGCCTCATCTATTAAATAAGGAGA
GAATAGAGTTTAGATTTTTACAGGACACCCCATACAAGCGACATGACAATTACTCACACACAATGATAGTCCCTAGCTTC
TTGGCGCCGGCAGTAACCCATAACTTTGCCTCACCAATGATGGTTTGGAGGAGAATAGGCGGTGGCGCAAATTTTTGCCG
-AAATACCCTAGCATTTCGCTCGTTCCAAATGGTCCAAGAGGTGAGCATGACGAGAGAGGACATGGCATGCCAATTCGGG
TTTCGGTCATCGGTACGCTTGACCCACCACTCCTTGACGGATTCATCAAGATGCCAATCGGGAATGTTGACGTGAGGTAG
CCCAAGCTTCTCGATGATAGATCTCCAAAGCCTAAGAGTGTAACGACACTTGAAGAAGAGGTGTGGCCCCGTTTCTTGCT
CTCTGTTGCATAGTGGACAAAGACCACAATTGACCCAACCACGCTTCTCCAGACGATCGGCGGTCCAAAT
>chr1D_2946
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---------------------------TTTTTTTTTCGAAACGGAGGCATGAGATTTGCCTCATCTATTAAATAAGGAGA
GAATAGAGTTTAGATTTTTACAGGACACCCCATACAAGTGACATGACAATTACTCACACACAATGATAGTCCCTAGCTTC
TTGGCGCCGGCAGTAACCCATAACTTTGCCTTACCAATGATGGTTTGGAGGAGAATAGGCGGTGGCGCAAATTGTTGCCG
-AAATACCCTAGCATTTCGCTCGTTCCAAATGGTCCAAGAGATGAGCATGACGAGAGAGGACATGGCATGCCAATTCGGG
TTTCGGTCATCGGTACGCTTGACCCACCACTCCTTGACGGATTCATCAAGATGCCAATCGGGAATGTTGACGTGAGGTAG
CCCAAGCTTCTCGATGATAGATCTCCAAAGCCTAAGAGTGTAACGACACTTGAAGAAGAGGTGTGGCCCCGTTTCTTGCT
CTCTGATGCATAGTGGACAAAGACCACAATTGACCCAACCACGCTTCTCCAGACGATCGGCGGTCCAAAT
>chr5D_2946
TTTTTT--------------------------------------------------------------------------
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--------------------------------TTTTCAAAACGGAGGCATAAGATTTGCCTCATCTATTAAATAAGGAGA
GAATAGAGTTTAGACTTTTACAGGATACCCCATACAAGCGACATGACAATTACTCACACACAATTATAGTCCCTAGCTTC
TTGGCGCCGGCAGTAACCCATAACTTTGCCTCACCAATGATGGTTTGGAGGAGAATAGGCGGTGGCGCAAATTTTTGCCG
-AAATACCCTAGCATTTCGCTCGTTCCAAATGGTCCAAGAGGTGAGCATGACGAGAGAGGACATGGCATGCCAATTCGGG
TTTCGGTCATCGGTACGCTTGACCCACCACTCCTTGACGGATTCATCAAGATGCCAATCGGGAATGTTGACGTGAGGTAG
CCCAAGCTTCTCGATGATAGATCTCCAAAGCCTAAGAGTGTAGCGACACTTGAAGACGAGGTGTGGCCCCG-TTCTTGCT
CTCTGTTGCATAGTGGACAAAGACCACAATTGACCCAACCACGCTTCTCCAGACGATCGGCGGTCCAAAT
>chr3D_2947
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----------------------------TTTTTTTTCGAAACAGAGGCATAAGATTTGCCTCATCTATTAAATAAGGAGA
GAATAGAGTTTAGATTTTTACAGGACACCCCATACAAGCGACATGACAATTACTCACACACAATGATAGTCCCTAGCTTC
TTGGCGTCGGCAGTAACCCATAACTTTGCCTCACCAATGATGGTTTGGAGGAGAATAGGCGGTGGCGCAAATTTTTGCCG
AAA-TACCCTAGCATTTCGCTAGTTCCAAATGGTCCAAGAGGTGAGCATGACGAGAGAGGACATGGCATGCCAATTCGGG
TTTCGGTCATCGGTACGCTTGACCCACCACTCCTTGACGGATTCATCAAGATGCCAATCGGGAATGTTGATGTGAGGTAG
CCCAAGCTTCTCGATGATAGATCTCCAAAGCCTAAGAGTGTAACGACACTTGAAGAAGAGGTGTGGCCCCGTTTCTTGCT
CTCTGTTGCATAGTGGACAAAGACCACAATTGACCCAACCACGCTTCTCCAGACGATCGGCGGTCCAAAT
>chr6D_2947
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----------------------------TTTTTTTTGGAAACGGAGGCATAAGATTTGCCTCATCTATTAAATAAGGAGA
GAATAGAGTTTAGATTTTTACAGGACACCCCATACAAGCGACATGACAATTACTCACACACAATGATAGTCCCTAACTTC
TTGGCGCCGGCAGTAACCCATAACTTTGCCTCATCAATGATGGTTTGGAGGAGAATAGGCGGTGGCGCAAATTTTTGCCG
AAAATACCCTAGCATTTCGCTCGTTCCAAATGGTCCAAGAGGTGAGCATGACGAGAGAGGACATGGCATGCCAATTCGGG
TTTCGGTCATCGGTACGCTTGACCCACCACTCCTTGACGGATTCATCAAGATGCCAATCGGGAATGTTGACGTGAGGTAG
CCCAAGCTTCTCGATGATAGATCTCCAAAGCCTAAGAGTGTAACGACACTTGAAGAAGAGGTGTGGCCCCGTGTCTTGCT
CTCTGTTGCATAGTGGACAAAGACCACAATTGACCCAACCACGCTTCTCCAGACGATCGGCGGTCCAAAT
>chr6B_2947
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----------------------------TTTTTTTTTGAAACGGAGGCATAAGATTTACCTCATCTATTAAATAAAGAGA
GAATAGAGTTTAGAGCTTTACATGACACCCCATACAAGCGACATGACAATTACTCACATACAATGATAGTCCCTAGCTTC
TTGGCGCCGGCAGTAACCCATAACTTTGCCTCACCAATGATGGTTTGGAGGAGAATAGGCGGTGGCGCAAATTTTTGCCG
-AAATACCCTAGCATTTCGCTCGTTCCAAATGGTCCAAGAGGTGAGCATGACGAGAGAGGACATGGCATGCCAATTCGGG
TTTCGGTCATCGGTACGCTTGACCCACCACTCCTTGACGGATTCATCAAGATGCCAATCGGGAATGTTGACGTGAGGTAG
CCCAAGCTTCTCGATGATAGATCTCCAAAGCCTAAGAGTGTAACGACACTTGAAGAAGAGGTGTGGCCCCGTTTCTTGCT
CTCTCTTGCATAGTGGAGAAAGACCACAATTGACCCAACCACGCTTCTCCAATCGATCGGCGGTCCAAAT
>chr3D_2951
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--------------------------------TTTTCGAAACGGAGGCATAAGATTTGCCTCATCTATTAAATAAGGAGA
GAATAGAGTTTAGATTTTTACAGGACACCCCATACAAGCGACATGACAATTACTCACACACAATGATAGTCCCTAGCTTC
TTGGCGCCGGCAGTAACCCATAACTTTGCCTCACCAATGATGGTTTGGAGGAGAATAGGCGGTGGCGCAAATTTTTGCTG
-AAATACCCTAGCATTTCGCTCGTTCCAAATGGTCCAAGAGGTGAGCATGACGAGAGAGGACATGGCATGCCAATTCGGG
TTTCGGTCATCGGTACGCTTGACCCACCATTCCTTGACGGATTCATCAAGATGCCAATCGGGAATGTTGATGTGAGGTAG
CCCAAGCTTCTTGATGATAGATCTCCAAAGCCTAAGAGTGTAACGACACTTGAAGAAGGGGTGTGGCCCCGTTTCTTGCT
CTCTGTTGCATAGTGGACAAAGACCACAATTGACCCAACCATGCTTCTCCAGACGATTGGCGGTTCAAAT
>SNPs
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S-------------------------------------------------------------------------------
------------------------------------------------S-------S-----------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
----------------S--------S--------------------------------------------------S---
------------------S------------------S------------------------------------------
-----------------------S----S---------------------------------------------SS----
------------------------------SSSSSSSSSSSSSSSSSSS-----------S-------------------
----------------------S-S-----------S---S---------------------------------------
--------------------------------------------------------------------------------
---S----------------------------------------------S-----------------------------
------------------------------------------------SSSSSSSSSSSS--------S-----------
--------------------------------------------------------------------------------
--S---------S-------SSS---------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------S--------------------------------------------------------
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--S----------------------------------------------------S------------------------
---------------------------------------S-----S---SSSSSSSSSS---------------------
--------------S------------------S-------------------S--------------------SSSS--
-----------------------------------------------------S---------SSSS------S------
----------------S-S-------------------S--------------------------------SS-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S----------S-SS---SSSS--S-------S------------------S-----------------
--------------------------------------------------------------S-------S----S----
--------------------------------------------------------------------------------
------------S----------------------------------------------S-----S--------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------S---------S-----------------------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
--------------------------------------------------------------------------------
----------------------------------------------------------------------
>forward_377
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-------------------------------------ACGGCACCACAAACAGATCA-----------------------
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>reverse_1960
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---------------------------------------ACCTCCTGATCCCGATGTGA---------------------
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----------------------------------------------------------------------
>forward_997
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-----------------CTGTATGGGTATGCCGCTCG-------------------------------------------
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----------------------------------------------------------------------
>reverse_2940
--------------------------------------------------------------------------------
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-----------------------------------------------------------ATGCCGGACCATCACAGATT-
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------
