>input_sequence_50614
--------------------------------------------------------------------------------
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----------------------------------------ATGGCGTTGGCGGGGGTGGGGGATGCGGCGGCGGTGACAC
AGCTCATCGGGCAGGCCATCGGGCTCGTCGCCATGATCATCCGGGCGGTGGACACGGTACGCCAGAACAGGCTGGAGTGT
GAGCACCTCGCCTGCCGCGTGTCCACGGTCGACGGGGTGCTGTCTAACCTGCCGCGGGACCAGGAGATGGCGCCGCCGCT
CAAGGTGCTGAAAAACACGCTGGAGGAGGCGCACCGCATGGTCATCGCCTGCCAGAACCGGGGCGCCGCCAGCCACTTCT
TCGGATCCCGCCGCCACGCCGATTGCTTCAATCAAGTCAACAACAGGATTATCTCCGACATCGTCATCCTCAACCTCAGC
CTAAACAGCTACATGGCTCGGCGACACTCCAACCAAGTCCTTCAACCCAGTCACATCGGCGTACCGACTGCCACAATAGC
CATGG---CGCCGTGGCCAGGCTCCAGCTCTGCCCCCCTGCAGACGCTGATGGTGGTGTCGCAGCAGTCGCAGGTAAGCT
CGATCTCCAGCGATAACCCCAGGGCGCTCACGTGGGCGGAGATTGCAGCCGCGACCAGCTTTTCCGTCGAGCTCGGCAGA
GGCAGCTCGGGGAGGGTATACAAGGGCCGTCTCCAGTTCCAGTTCCACTTCCACCACGGCACGGAGGTGGCCGTTAAGGT
GCTGGAAAAGCACAGGCGGCAGGGCGTGGAGGACGCGTTCATGGCGGAGAGCAACATCCTTTCCG------GCCTCCGGC
ACGACCACATCGTCCGCCTCGTCGGCTGGTGCGCGGAGCAGGATTACCGCATGCTGGTCTACGAGCATATGGGAAAAGGC
ACGCTTAGAGACCACCTTCAGCATTTCGGCGGTGGCCCTAGCTCGTCGCCGGTGACGA---CGTCCTGGGAGACGCGCGT
GGAGGTGCTGCTGGGCGTGGCGCGGGCCATCCACTACCTGCACTGCGGCGCGGATCCGCTGGTCATCCATCGCAACGTCA
GCTCGTCCAACATCCTCCTGGACGGCGCCAACTGGACGCCGCGCCTGTCCGGCTTCGGCTCAGCGGTGTTTCAAGCGGCG
GGTGTGGAGGAGCACGGCGGCCAGCTCGTCGAGGAGGTCGTCGGCACGCCGGGTTACATAGAACCGGAGTACAGCGGCAC
GCACCGCGTGAGCGCGGCGAGCGATGTGTACAGCTTCGGGGTGGTGGTGCTGGAGGCGCTGACGGGGAGGCCACCGGACA
TCTACGGCGTCACGCTCGGCCTCCTCGTCGACTCCGTGCTCCCGAGCGTACAGGAGGGAAAGCTGCGGGAGGTGCTGGAT
GGCCACTCGGCGCTGCAGCCGACGCCGCGTCAGATGGAGGCGCTGGATCTCGTGGCATACACGGCGAGCCGCTGCCTGTG
CCCGCGCGGGCACAACCGG---CTGGCCATGTCTGATGTCGTGGCCAACCTCCACAGGGCGCTCCAGACCATACGCAGCA
ATTAA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>chr3A_1_TraesCS3A01G009100
TTGTCCGGTTTATATGAAATACAGCCGGTTTTCATGAATTTTGTCTGGTTTGTTCATATCTGGAATCAATTGTATGCGGG
TAGCGTTGGATTGCCGGCTCCCGCATCCATGTCTGCGGACTGTTCCCCCTATACGTGGATGAATGCGGGAGGAAATTTAC
GGGCCAGAGTTGGAGATCCGCTTATGCGCTCTCTCTCTCTCAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCAATGTGCCACTGATCCATATGCCTATATGCTACATGTTCCTAGTATGTTGTATGCGACTTGTCGTGCCAATAAGT
TTGTCATGATGGTAATCTCGATTAATCTTAAACATAATAAAAATATTTAAAACTAGATCAGAAGTTCTTTGCTTATAATG
AACTAATATAACGATTTGTTGAGGGAGTGTGGTATCCCAGCCCACCAGGTTTCAAATCCTGGTGCTCGCATTTATTCCTG
AATTTATTTTAGGATTTCCAGCGATGCGCATTCAGTGGGAGGAGACGTTCCCGTCGACGAGGTGCCTATTTCAAGACGAT
ATGCCGGCTCATAGGGGTGAGTGTATGCGCGTGTATATGAGCCCCTTGCGTATGTACTGTGTTCAAAAAGAATATAACGA
TTTGATGCGAGAGAGAAAAAAAGAAGAAACATTCAAACCGTGGACCAAAAGTTTGAAACCGCTCTATGGTTGTGGTTTTA
TGCAGAGAGAAGGGCTTGCAACTCGTGCATGTGGGCGGGTTGATGCACGGCTTGTCACACGAGCTTGACTTTGACAATTC
CTCCGGTCATCGCCGACATGGTGCAGAGAGGGAGCGACGGACGAAGGCATGGCGCGGAGGCTAGTGCCCACTGGCCACGG
CCTTCCGCGTTGCTTCGCCCTCGCGCGCGCTGATAAAAAGGCTACCTCCAGTCTACTCCTTGGGAAACGTGCACTTGGTA
CCGCACGTAGTACACTACAGAGTACAGTGAGTTGAGTATCATGGCGTTGGCGGGGGTGGGGGATGCGGCGGCGGTGACAC
AGCTCATCGGGCAGGCCATCGGGCTCGTCGCCATGATCATCCGGGCGGTGGACACGGTACGCCAGAACAGGCTGGAGTGT
GAGCACCTCGCCTGCCGCGTGTCCACGGTCGACGGGGTGCTGTCTAACCTGCCGCGGGACCAGGAGATGGCGCCGCCGCT
CAAGGTGCTGAAAAACACGCTGGAGGAGGCGCACCGCATGGTCATCGCCTGCCAGAACCGGGGCGCCGCCAGCCACTTCT
TCGGATCCCGCCGCCACGCCGATTGCTTCAATCAAGTCAACAACAGGATTATCTCCGACATCGTCATCCTCAACCTCAGC
CTAAACAGCTACATGGCTCGGCGACACTCCAACCAAGTCCTTCAACCCAGTCACATCGGCGTACCGACTGCCACAATAGC
CATGG---CGCCGTGGCCAGGCTCCAGCTCTGCCCCCCTGCAGACGCTGATGGTGGTGTCGCAGCAGTCGCAGGTAAGCT
CGATCTCCAGCGATAACCCCAGGGCGCTCACGTGGGCGGAGATTGCAGCCGCGACCAGCTTTTCCGTCGAGCTCGGCAGA
GGCAGCTCGGGGAGGGTATACAAGGGCCGTCTCCAGTTCCAGTTCCACTTCCACCACGGCACGGAGGTGGCCGTTAAGGT
GCTGGAAAAGCACAGGCGGCAGGGCGTGGAGGACGCGTTCATGGCGGAGAGCAACATCCTTTCCG------GCCTCCGGC
ACGACCACATCGTCCGCCTCGTCGGCTGGTGCGCGGAGCAGGATTACCGCATGCTGGTCTACGAGCATATGGGAAAAGGC
ACGCTTAGAGACCACCTTCAGCATTTCGGCGGTGGCCCTAGCTCGTCGCCGGTGACGA---CGTCCTGGGAGACGCGCGT
GGAGGTGCTGCTGGGCGTGGCGCGGGCCATCCACTACCTGCACTGCGGCGCGGATCCGCTGGTCATCCATCGCAACGTCA
GCTCGTCCAACATCCTCCTGGACGGCGCCAACTGGACGCCGCGCCTGTCCGGCTTCGGCTCAGCGGTGTTTCAAGCGGCG
GGTGTGGAGGAGCACGGCGGCCAGCTCGTCGAGGAGGTCGTCGGCACGCCGGGTTACATAGAACCGGAGTACAGCGGCAC
GCACCGCGTGAGCGCGGCGAGCGATGTGTACAGCTTCGGGGTGGTGGTGCTGGAGGCGCTGACGGGGAGGCCACCGGACA
TCTACGGCGTCACGCTCGGCCTCCTCGTCGACTCCGTGCTCCCGAGCGTACAGGAGGGAAAGCTGCGGGAGGTGCTGGAT
GGCCACTCGGCGCTGCAGCCGACGCCGCGTCAGATGGAGGCGCTGGATCTCGTGGCATACACGGCGAGCCGCTGCCTGTG
CCCGCGCGGGCACAACCGG---CTGGCCATGTCTGATGTCGTGGCCAACCTCCACAGGGCGCTCCAGACCATACGCAGCA
ATTAATTTGACTGAGAATTAGTGAGACTACA--AGAATGTCTCCGTATCTTTTAAATATCCATTTAATTCTCCGCGA---
----------TTTCTTTCACCTCCCATCGATTTTGTGAAGAATG-AAAAGTAGGAGTAATGGTTAAATGGTTAATGATTT
CATTGATGATTGGCTTTG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TATACATATTGGAGAGGCGTTGGTTACATAGAGAGGCAGATGTGTTGC
ATCCACGCAGGGACGTGTCCGTTGGCACTGAACACAAACAACTCACGGGC------------AAGCAAGCAATTACCGAT
TATATTAACCCTAATCTATTTCTAACACTCCTCTTGTACAATGCTTA---TTTTTTAAATAATCCATCATAGAAAGCTTC
TTGCATATTCACCACTTATCTTAAAAAAT--CCTTTGTGTAATCTTTAAAGTCTTCTTCAAAAATCATGTGGAAAAAAA-
TATGAGGAGAATAGTATAAATACGTTGCTAAAACTTCTTTGAACCCACTGGAAAAAATAATAAGAAAATGACGCGACATG
ATACTACCA--TGCAT--------------------------------CAAAGAGGGTGCATAAAAATGATTAACATCAG
ATACAATTCATTATATTTATGTGATA-TGGTATTGTCGTGTCCTCTTGCTCCAACACCTTTGACCGAGAACACCTCTTCT
TCGCCAACAACATAACATCAAGGTCCACCAATGCATGATAATCATCTTCAACGTCTTTGCAATTAGTACAACTATAACTA
TCTCTATAGCTACTAAAATGAATGCATTACATGAAATTTGACATGCAGGTTGAAGAAATGACAATTAAATGGCTCTTGCC
ATCATGC--TACCATAAAACACATGCCATGTAAAATAATAATTGCAACATATCGCATCTCATACAAACCCATTCCCATGA
CTGAGGGAGTCCTGTATTAGGGGGTGTCCGGTTGGCCGGACTATACCTTCAGCCGGACTCCAGGACTATGAAGATACAAG
ATTGAAGACTTCGTCCCGTGTCCGGAAGGGACTTTCCTTGGCGTGGAAGG
>chr3D_998
--------------------------------------------------------------------------------
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-------------------------------------ATCATGGCGTTGGCGGTCGTGGGGGATGCGGCCGCGGTAACAC
AGCTCATCGGGCAGGCGATCGGGCTCGTCGCCATGATCATCCGGGCGGTGAAGACGGCCCACCAGAACAGGCTCGAGTGT
CAGCACCTCGCTTGCAGTGTGTCCACGGTCGACGGGGTGCTGTCTAACCTGCCGCGGGACCAGGAGATGGCGCCGCCGCT
CAAGGTGCTGAACAACACGCTTGAGGAGGCGCACCGCATGGTCATCGCCTGCCAGAACCGGGGCGCCGTCAGCCAGTTCT
TCGGATCCCGCCGCCACGCCGATTGTTTCAATCAAGTCAACAACAGGATTACGTCCGATATCGTCATCCTCAACCTCAGC
CTAAACAGCTACATGGCCCGGCAACACTTCAACCAAGTCCTTCATCCCAATCACATCGGCACACCGACTGCCACAATAGC
CATGG---CGCCGTGGCCAGGCTTCAGCTCTGGCTCCCTGCAGACTCAACTGGTGGTGGTGTCGCAGCCGCAGGTAAGCT
CGATCTCCTCCGATAACCCCAGGGCGCTCACGTGGTCGGAAATTGCAGCGGCGACCAGCTTTGCCGTCGAGCTCGGCCGA
GGCAACTCGGGGAGGGTATACAAGGGCCGTCTCCAGTTCCAGTTCCACTTCCACCACGGCACGGAGGTGGCCGTGAAGGT
GCTGGAAAAGCACAGGCGGCAGGGCATGGAGGACGCGTTCATGGCGGAGAGCAACATCCTTTCCG------GCCTCCGGC
ACGACCACATCGTCCGCGTCCTCGGCTGGTGCGCGGAGCAGGAGTACCGCATGCTGGTCTACGAGCATATGGGCAACGGC
ACGTTTAGAGACCACCTGCAGCATTTGGGCGGTGGCCCTAGCTCGTCGCCCGTGACGA---CGTCCTGGGAGAAGCGCGT
GGAGGTGCTGCTGGGCGTGGCCCGGGCCATCCACTACCTGCACCGCGGCGCGGATCCGCTGGTCATCCATCGCAACGTCA
GCTCGTCCAACATCCTCCTTGA---CGCCAACTGGACACCGCGCCTGTCCGGCTTCGGCTCAGCGGTGTTTCAAGCGGCG
GGTGTGGAGGAGCACGGCGGCCAGCTCGTGGAGGAGGTCGTCGGCACGCCCGGGTACATAGACCCGGAGTACAGCGGCAC
GCACCGCGTGAGCACGGCGAGCGATGTGTACAGCTTCGGGGTGGTGGTGCTGGAGGCGCTGACGGGGAGGCCGCCGGACA
TCTACGGCGTCACGCTCGGCCTCCTCGTGGACTCCGTGCTCCCGAGCGTACACAACGGAAAGCTGCGGGATGTGCTGGAT
GGCCACCCGGCGCTGCAGCCGACGTCACGTCAGCTGGAGGCGCTGGATCTCGTGGCATACACGGCGAGCCGCTGCCTGTG
CCCGCGCGGGCAGAACCGGCGCCTGGCCATGTCTGATGTCGTGGCCAACCTCCACAGGGCGCTCCAGATCATACGCAGCA
ATTA----------------GTGAGACTACAAGAGAATGTCTCCGTATCTTTTAAATACCCATTTAATTCTCCGCGACAG
TACCGAACGTTTTCTTTCACCTCCCATCGATTTTCTGAAGAATG-AAAAA------TAATGGTTGAACGGTTAATGATTT
CATTGATGATTAGATTTG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TATACATGTTGGAGAGGCGTTGGTTCCATAGAGAGACAGATGTGTTGC
ATCCAC-CAGGGACGTGGCCGTTGGCAATGAACACAAACAACTCACGGGTATTACTTAATATAAGGAAGCAATTACCGGT
TAGATTCACCCTAATCTACTTATAACACACCTCTTGTACAATGCGTGCGTTTTCTAGAATAATCCATCATAGAAAGCCTC
TTGCATATTCACCACTCATCTTTAAAAAATGCCTTTCTGTAATCTTAAAAGTCTCCTCCAAAAATCATGTGG--AAAAA-
TATGAGAAAAATAGTGTAGATATGTTGCTAACACATTTTTAAACCCACTGAAAAAAATCATAGAAAAATGATGCGACATG
ACACTACCGCGTGCAT--------------------------------CACACAAGGTGCATAAAAGTGATTAACATCAC
ATACAATTCATTATATTTATGTGATAATGGTATTGTCGTGTCCCCTTCCTCCAACACCTTTGGACGAGA--ACACCTTCT
TCACCTACAACATAACATCAAGGTCCACCAATGCATGATAATCATCTCCAT-GTCTTTGCAAT---TACAACTATAACTA
TCTCTATAGCTAATAAAATAAATGCATTGCATGAAATTTGACATGCAGCTTGAATAAATGACAATTAAATGGCTCTTTCC
ATCATGTCATACCATAAAACACATGACATGTAAA-TAATAATTGCAACATATAGCATCGCATACAATCTCATTCCCATGA
C-------------------------------------------------------------------------------
--------------------------------------------------
>chrUn_998
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------ATCATGGCGTTCGCGGTCGTGGGGGATGCGGCCGCGGTAACAC
AGCTCATCGGGCAGGCGATCGGGCTCGTCGCCATGATCATCCGGGCGGTGGAGACGGCACACCAGAACAGGCTCGAGTGT
GAGCGCCTCGCTTGCCGTGTGTCCACGGTCGACGGCGTGCTGTCTGACCTGCCGCGGGCCCAGGAGATGGCGCCGCCGCT
CAAGGTGCTGAACAACACGCTTGAGGAGGCGCACCGCATGGTCATCGCATGCCAGAACCGGGGCGCCGCCAGCCACTTCT
TCGGATCCCGCCGCCACGCCGATTGCTTCAATCAAGTCAACAACAGGATTACGTCCGACATCGTCATCCTCAACCTCAGC
CTAAACAGCTTCATGGCCCGGCGACACTTCAACCACGTCCTTCATCCCAATCACGTCGGCGTACCGACTGCGACAATAGC
CATGGCGCCGCCGTGGCCAGGCTTCAGCTCTGGCTCCCTGCAGACTCAGCTGGTGGTGGTGTCGCAGCCGCAGGTAAGCT
CGATCTCCTTCGATAACCCCAGGGCGCTCACGTGGTCGGAGATTGCAGCGGCGACCAGCTTTGCCGTCGAGCTCGGCCGA
GGCAACTCAGGAAGGGTATACAAGGGCCGTCTCCAATTCCAGTTCCACTTCCACCACGGCACGGAGGTGGCCGTGAAGGT
GCTGGAAAAGCACAGGCGGCAGGGTGTGGAGGACGCGTTCATGGCGGAGAGCAACATCCTTTCCG------GCCTCCGGC
ACGACCACATCGTCCGCCTGCTCGGCTGGTGCGCGGAGCAGGAGTACCGCATGCTGGTCTACGAGCATATGGGCAACGGC
ACGTTTAGAGACCACCTGCAGCACTTGGGCGGTGGCCCTAGCTCGTCGCCCGTGACGA---CGTCCTGGGAGACGCGCGT
GGAGGTGCTGTTGGGCGTGGCCCGGGCCATCGAGTACCTGCACCGCGGCGCGGATCCGCTGGTCATCCATCGCAACGTCA
GCTCGTCCAACGTCCTCCTTGA---CGCCAACTGGACACCGCGCCTGTCCGGCTTCGGCTCAGCGGTGTTTCAGGCTGCG
GGTGTGGAGGAGCACGGCGGCCAGCTCGTCGAGGAGGTCGTCGGCACGCCCGGGTACATAGACCCGGAGTACAGTGGCAC
GCACTGCGTGAGCACGGGGAGCGATGTGTACAGCTTCGGGGTGGTGGTGCTGGAGGCGCTGACGGGGAGGCCGCCGGACA
TCTACGGCGTCACGCTGGGCCTCCTCGTGGACTCCGCGCTCCCGAGCGTACACAACGGAAAGCTGCGGGATGTGCTGGAT
GGCCACCCGGCGCTGCAGCCGACGCCGCGTCAGCTGGAGGCGCTGGATCTCGTGGCATACACGGCGAGCCGCTGCCTGTG
CCCGCGCGGGCAGAACCGGCGCCTGGCCATGTCTGATGTCGTGGCCAACCTACACAGGGCGCTCCAGATCATACGCAGCA
ATTA----------------GTGAGACTACAAGAGAATGTCTCCGTATCTTTTAAATATCCATTTAATTCTCAACGACAG
TACCGAACGTTTT-TTTCACCTTCCATCGATTTTGTGAAGAATGAAAAAA------TAATGGTTGAACGGTTAATGATTT
CATTGATATACATGTTTTTTTAGCATCAGTACAGACACAAGCGCTCATATACACGCGCATACACTCACCCCTATGAACGC
ACACACGCACACCCTATCCTATGAGCACCTCCGAAAGACTGAGCCACGGAACGTCTCCTCTCACTGAAAGCGCATCGCCG
AAAATCCTAAAATAGATCCAGGAATAATGCGAGCACCAGGATTCGAACCCTCGTGGGTTGGGGATACCACTGTCCGCCTA
ACCATCTCAGCCACAGGTTGGTTCGCCATTGATATACATGTTGGAGAGGCGTTGGTTCCATAGAGAGACAGATGTGTTGC
ATCCAC-CAGGGACGTGTCCGTTGGCAATGAACACAAACAACTCACGGGTATTACTTAATATAAGGAGGCAATTACCAGT
TAGATTCACCCTAATCTACTTATAACACACCTCTTGTACAATGCGTGCGTTTTCTTGAATAATCCATCATAGAAAGCCTC
TTGCATATTCACCACTCATCTTAAAAAATG-CCTTTGTGTAATCTTAAAAGTCTCCTCCAAAAATCATGTGG--AAAAAA
TATGAGAAAAAAAGTGTAGATATGTTGCTAACACATTTTTAAACCCACTGAAGAAAATCATAGAAAAATGATGCGACATG
ACATGGTATTGTCGTGTCCTCTTCATTATATTTATGTGATTAACATCACACACAAGGTGCATAAAAGTGATTAACATCAC
ACACAATTCATTATATTTATGTGATATTGGTATTGTCGTGTCCTCTTCCTCCAACACCTTTGGACGAGA--ACATCTTCT
TCACCTACAACATAACATCAAGGTCCACCAATGCATGATAATCATCTTCAT-GTCCTTGCAAT---TACAACTATAACTA
TCTCTATAGCTAATAAAATAAATGCATTGCATGAAATTTGACATGCAGCTTGAATAAATGACAATTAAATGGCTCTTTCC
ATCATGCCATACCATAAAACACATGACATGTAAA-TAATAATTGCAACATATAGCATCTCATACAATCTCATTCCCATGA
C-------------------------------------------------------------------------------
--------------------------------------------------
>chr3A_1647
--------------------------------------------------------------------------------
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-------------------------------------------------TCCACGACGGCCCGGAGGTGGCCGTTAAGGT
GCTGGACAAGCACAGGCCGCAT---------GACACGTTCGTGCCGGAGCTCGTGATCACCTTCCGCCTCCGCCTCCGCC
ACGACCACATCGTGCGCCTCGGCGGCTGGTGCGAGGAGGAGGACGACCGCATGTTCGTCTACGAGCATATGAGCAACGGC
ACGCTTAGAGACCGCCTGCAGCGCGTGC------------GCTCGTCGCTGGTGACGGCGGCGCCCTGGAGGACCCGCGT
CGCGGCGCTGTTGGGCGCGTCCCGGGCCATCCAGTACTTGCACTGCAGTGCGCAGCCGGTGGTCATCCACCGCAACGTCA
GCTCGTCCAGCATCCACCTGGA---CATGAACTGGACACCGCGCCTGTCCGGCTTCGGCGCAGCGCTGTATCAAGCGGCG
GGC---GAGGAGCATGGCGGCCAGCTCGTCGAGGAGGTCGTCGGCACGCCCGGGTACGTCGACCCGGAGTACACCCGCAC
GAAGCGTGTGAGCACGGTGAACGACGTGTACAGCTTCGGGATGGTGATGCTAGAAGCGCTGACGGGTGAGG---------
--------------------------------------------------------------------------------
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--------------------------------------------------
>chr3D_1647
--------------------------------------------------------------------------------
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-------------------------------------------------TCCACGACGGCCCGGAGGTGGCCGTTAAGGT
GCTGGACAAGCACAGGCCGCAT---------GAGACGTTCGTGCCGGAGCTCGTGATCACCTTCC------GCCTCCGCC
ACGACCACATCGTGCGCCTCGTCGGCTGGTGCGAGGAGGAGGATGACCGCATGTTCGTCTACGAGCATATCAGCAACGTT
ACGCTCAGAGACCACCTGCAGCGTGTTC------------GCTCGTCGCCGGTGACGGCGGCGCCCTGGAGGACTCGCGT
CGCGGCGCTGCTGGGCGCGTCCCGGGCCATCCAGTACCTGCACTGCGGCGCGCAGCCGGTGGTCATCCACCGCAACGTCA
GCTCGTCCAACATCCTCCTGGA---CGCGAACTGGACGCCGCGCCTGTCCGGCTTCGGCGCGGCGGTGTACCAAGCGGCA
GGC---GAGGAGCGCGGCGGCCAGCTCGTCGAGGAGGTCGTCGGCACGCACGGGTACATCGACCCGGAGTACAGCCGCAC
GAAGCGCGTGAGCACGACCAGCGACGTGTACAGCTTCGGGGTGGTGATGCTAGAGGCGCTGATGGGCGAGG---------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>chrUn_1865
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------GGCCCTAGCTCGTCGCCAGTGAGTG---CGTCCTGGAGGACCCGCCT
CGAGGTGCTGCTGGGCGCGGCCCGGGCCATCGAGTACTTGCACCGTGGTGCGGATCCGCTGGTCATCCACCGCAATGTCA
GCTCCTCCAACATCCTCCTGGA---CGCAAGCTGGACGCCGCGCCTGTCCGGCTTCGGCTCAGCGGTGTTTCAAGAGGCC
GGC---AGGGAGCACGGCGGCCAGCCCGTCGGGGAGGTCATGGGCACGTTCGGGTACATCGACCCGGCGTACAGCTACAC
GACGCACATCAGTCCGGCGAGTGACGTGTACAGCTTCGGGGTGGTGATGCTGGAGGCGCTGACGGGGAGGCCGCCGGTCA
TCTACGGCGTGAC------CCTCCTCGTGGACTCCACGCTCCCCAACTTACAGAGTGGAAAGCTGCGGGATGTGCTGGAT
CGCCACCCGGCGCTGCAGCCAACGCCACGTCAGCTAGAGGCACTGGATCTCGTGGCACAAACGGCGATCCGCTGCCTGTG
CCCGCGCGGGCACAATCGGC---TGGCCATGTCGGAGGTCGTGGCCAATCTCCAGAGGGCACTCGAGATCATACGCAACA
AT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------SS--------------S-----S----
----------------S-----------------------------------S----S--S------------S------
-----------S-----S--------------------------------------------------------------
------------S--------S----------------------------------------------------------
---------------------------------------------------SS---------------------------
-----------------S----------S---------------S----S------------------------------
-----------------------S--------S-S----------S-S-S--------SS-SS----S------------
--------SS-------------------------S-------------S------------S--------------S--
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S--S---
-----------------S--------S-----------------------------------------------------
---------------------S----------------------------------------------------------
----------------------SSS-------------------------------------------------------
--------------------------------------------------S--S--------S-----------------
-------------S----------------------------------------------------------S-------
----------------------------S------------------------S-S--------------S---------
------S--------------------------S----------------------------------------------
--------------------------------------------------------------------S-----------
----SSSSSSSSSSSSSSSS------------------------------------------------------------
-------------------------------------------------SSSSSSS--------S--S------------
-----------S-S------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S-----------------S---------S------------
------S--------------------S---------------------S---------------S------------S-
--S---S-----------S--S------S---------------S-S------S--S--------------------S--
----------------S-----------------------------S-------S--S--------------SS------
------S-S------S--S---S--------S--S-S---S---------S-------S---SS-------S--------
-S------S-----------------------------------------S-S-S-----------S------------S
-----------------------------------------------S--------------SS-----SS--S------
--S--S--------------------------------------------SS-----------SSS--------------
------------S------S--------S-------------------S-----S----------------------S--
-------------------------S--------S-----------------S-------------S-S-----------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_957
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------CCTTGGGAAACGTGCACTTG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>reverse_1834
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------------------------------AAAAGGC
ACGCTTAGAGACCA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------
>forward_960
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------TGGGAAACGTGCACTTGGTA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>reverse_2920
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------ATTGGAGAGGCGTTGGTTACA--------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
