>input_sequence_50582
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-----------------------------------------------------------------CCATATATGAGCTTT
GCAAATCTAGCATCCTCGCTCGCAACCTGACCTGCTCGCACCAACGGCAGCCGAAATGCGGCAACCCGAACCCCTCCACT
GTCTCCTCCTCCTCACGGTCGCCTCGCTCTGCGGGCTAGCGCGCACGGTGGCGGCGGGCGACGACGGCGGCATGCCGCTG
GTCACCGCGATCACCAAGGACGCGGCCACCTCGCTCTACACCGCGCCGCTCCGGGACACCCGCCC------GCTCGTCCT
CGACCTCTCCGGCCCCATGGTCTGGACCACCTGCG---ACGGGCCCTCCCATGACACGCTCGACTGCAGCAGCGACGCCT
GCACGCGCGCGCACCGGTTCCAGCCGCCCAACTGCCCGCAGACCGGCTACGGCGAGCACGACGCC------CGCA-----
-ACCGCTGCAAGTGCACCGCGCACCCGCACAACCCCGTCTCCGGCTACACCGCGTCGGGGGACGTGACGCGCGTCACGCT
CTCCGCCAACGCCACCGACGGGAAGAACCCTCTGTATGAGGTGTCGTTCACCGCCGTGGCATCCTGCGCGCCGGCGTTGC
TCCTGGCCAAGCTGCCGGCGGGGGCGGCCGGCGTCGCG---------GGGCTCGCGCGCTCGGGCGTCGCGCTCCCGGCG
CAGGTCGCGGACACGCAGAGGGTCGGTAACAAGTTCGCGCTCTGCCTTCCCAGCGCCGGCTCCGGCG---CCGGCGTGG-
--------CCATCTTCGGCGGGGGCCCGCTCTTCCTC---CTCCCGCCGGGCCGGCCGGACGTCAACGCGTCCCTGGCCG
GCTACACGCCGCTGCGAAAGCACGGCGAGT---CCCCCGGGTACTACATCTCGGCCGACAAGGGCATCGCCGTGAACCAG
GCGCCGCTGCAGCTCGACAATGGATACGGCTCACCGCTGGTCCTCGGGCTGTGCTCCACGACCCCGTACACGGCGCTCCG
GCCCGACGTGTACCGTGCGTTCATCAAGGCGTTCGATACGGCCACG-----GCGGGCAGGGCGAGGATCA----------
-----------CACCGGCGGTGGTACCGTTCGAGCTGTGCTATAACTCGACGGAGCTGGGGTCGACGCGGCTGGGCTACG
CCGTGCCTCAGATCGACCTGATGCTGGAGGGCGGCAGGAACTGGACGGTGTTCGGCGGCAACTCCATGGTGCAGGTGAAC
GA---CAACACGGCGTGCCTCGCGTTCGTGGAGATGAAGCAGGGGGAGGTGGACAAGCAGGGCGGGT------CGCCGGC
GGCGGTGATCGGGGGGTTCCAGATGGAGAACAACCTGCTGGTGTTCGACGAGGAGAATCAGCGGCTCGGCTTCAGCTCGC
TGCTCTGGGGCAGGCAGACGACGTGCAGCAACTTCAATTTCACCATGGCTGCCTAGCTCGCCAAAGG----TTTATGCCA
T---------CGTGGTTGTATGTGCATTGTGCTTTTTTCCAAGTGGTCCTA-TTCTCTGAAATCGGAACTTGCCATCCGT
AAGATTTATATATTCACTGCATAACATTGAACA-----------------------------------------------
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>chr3B_1_TraesCS3B01G513500
TAGCATCGGTTGTAGCTTT-TCTGCCGCCGGTTGCAAC-AAAAAATCACAGTAGCCGGATGCATC-AAAAAAATGGTTGA
AGCTTTTCAAAATTAGGTTTGAAGCTTTGCATGTCAACGGTTGCAGCTTTTTGTCATGTG-CTCGCTGGTTGAATCTTTA
TATGAAGCCGGTTAAAGCTTTCTTTAATGTGGGATGAAGCTTTTCAATTCAACAGTTGAAACTCTTCAATTTAATGGATG
TAGCTTTTTTGTCCTCGGTGCCCGGGCGATCATTTTCTTTGTATTTTC-GGTTGAAGCTTTCCGTCGCT--GTTGTAGCT
TTTCAGGCCACC--------------------------------------------------------------------
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------------------GGTTGCAGCTTTTGTTGC-GGG-AGTGCGCCGGCGACCAACATCTCTGTTTGTCTTTTGGAA
CTTTTTATGTTGCCGGTTGAAGCTATTTGGGTCATCGGTTGTAGCATTTTGCGCTGCCGGTTGCAGCTTCTCTCACGCGC
GGCCATCAGGCGGCAGCGCGGCCACGGCGATGAGC-GCAGCCATGGAAACGGCGTAGCAGTGTTGCCCCCGAGGGGCGCA
TGAAAAGCACAGGAGGCAGGAGCTAATGGCCGGCCTGGATTCTTAGAGTTTCCTGCCTGGGCAATCAC---GAGGAAGGA
---GTGGACGGAGGCGTTGGGGAGAGGATAAGGTACACGTGTTGCCTTCCTGGTGGCTAGCGCCAGCGAGGCGAAAGCGA
CCGGCCAGAGCGTTCCGCCGGCGCATCGCGCGTAAACACTTCCCAAAAAAAAGTGGTAATAAGACCAAGAACTTGGTGGA
GAGCATGTACGCGCTGATCTTCCATTGCTTCATCACAAAAGAAAAATCATCACCGACACCACCGATCTCTAATTAATCTC
TATAGTCAACGCAATATTCTTGGATGGCGCCTCGACGTCGTGCCCGGATGACTGGTGATGAT---AACTTAGAAAACACT
AGCAGGTCAGAATCCTCGAGCAAACATCATCTCACACGTATGCCTGCATCGGCCGGCCGCCACCACCATATATGAGCTTT
GCAAATCTAGCATCCTCGCTCGCAACCTGACCTGCTCGCACCAACGGCAGCCGAAATGCGGCAACCCGAACCCCTCCACT
GTCTCCTCCTCCTCACGGTCGCCTCGCTCTGCGGGCTAGCGCGCACGGTGGCGGCGGGCGACGACGGCGGCATGCCGCTG
GTCACCGCGATCACCAAGGACGCGGCCACCTCGCTCTACACCGCGCCGCTCCGGGACACCCGCCC------GCTCGTCCT
CGACCTCTCCGGCCCCATGGTCTGGACCACCTGCG---ACGGGCCCTCCCATGACACGCTCGACTGCAGCAGCGACGCCT
GCACGCGCGCGCACCGGTTCCAGCCGCCCAACTGCCCGCAGACCGGCTACGGCGAGCACGACGCC------CGCA-----
-ACCGCTGCAAGTGCACCGCGCACCCGCACAACCCCGTCTCCGGCTACACCGCGTCGGGGGACGTGACGCGCGTCACGCT
CTCCGCCAACGCCACCGACGGGAAGAACCCTCTGTATGAGGTGTCGTTCACCGCCGTGGCATCCTGCGCGCCGGCGTTGC
TCCTGGCCAAGCTGCCGGCGGGGGCGGCCGGCGTCGCG---------GGGCTCGCGCGCTCGGGCGTCGCGCTCCCGGCG
CAGGTCGCGGACACGCAGAGGGTCGGTAACAAGTTCGCGCTCTGCCTTCCCAGCGCCGGCTCCGGCG---CCGGCGTGG-
--------CCATCTTCGGCGGGGGCCCGCTCTTCCTC---CTCCCGCCGGGCCGGCCGGACGTCAACGCGTCCCTGGCCG
GCTACACGCCGCTGCGAAAGCACGGCGAGT---CCCCCGGGTACTACATCTCGGCCGACAAGGGCATCGCCGTGAACCAG
GCGCCGCTGCAGCTCGACAATGGATACGGCTCACCGCTGGTCCTCGGGCTGTGCTCCACGACCCCGTACACGGCGCTCCG
GCCCGACGTGTACCGTGCGTTCATCAAGGCGTTCGATACGGCCACG-----GCGGGCAGGGCGAGGATCA----------
-----------CACCGGCGGTGGTACCGTTCGAGCTGTGCTATAACTCGACGGAGCTGGGGTCGACGCGGCTGGGCTACG
CCGTGCCTCAGATCGACCTGATGCTGGAGGGCGGCAGGAACTGGACGGTGTTCGGCGGCAACTCCATGGTGCAGGTGAAC
GA---CAACACGGCGTGCCTCGCGTTCGTGGAGATGAAGCAGGGGGAGGTGGACAAGCAGGGCGGGT------CGCCGGC
GGCGGTGATCGGGGGGTTCCAGATGGAGAACAACCTGCTGGTGTTCGACGAGGAGAATCAGCGGCTCGGCTTCAGCTCGC
TGCTCTGGGGCAGGCAGACGACGTGCAGCAACTTCAATTTCACCATGGCTGCCTAGCTCGCCAAAGG----TTTATGCCA
T---------CGTGGTTGTATGTGCATTGTGCTTTTTTCCAAGTGGTCCTA-TTCTCTGAAATCGGAACTTGCCATCCGT
AAGATTTATATATTCACTGCATAACATTGAACAATAAACTGGTGTGTCAACGAAGCATTTGTTAGGTTGTCAGAGAGGAG
ACACAAATTTTTTCCCTTTTACCGGAGTTCAAATATGTTAACCCTTTTTGTGACAGTCAAGGACCTCCTCTCCTCTATCA
CTTAAATAAAAGAGAGTTGTCCGATTAATTAGACCGACATACCGCACATACTTTAGGTACATAATTTTGTTTTGCCGTCG
GTCAAATATCTAAGCCATTGGATGCTCAATGAACAACCGGGATGGTTGTCTTTAACCGCAACCGTTTCTTTCTCTCGCAC
GAACAGATAAGGCCCACGCCCCTTGCAACCGCCCACCTGCCCTGCCCCAACCGCATGTCTCCACCCCCGCCCCACCCCCA
CCCCTCTGCTCAGTGGGCGTTGCCATGCGTTGCCTCGCCCTTCCCACCAACGTTGCTTGCCGCCTCCGCGACCATCCATC
TAAGCCCCGCCGATGAACATGAAACACTGATGACCCCCGCACCTCCCAACCCACACCCGCCAACCCGCTTCGTCGCCTCC
GCCTAGGACGTCGCAGCTCACAACTGCTCACAGTCATCCCCGTATCAGGCAAGGTCTTGGATCGGCCTTACAAAGGTCGA
CGCTCATCACTTCGCTCCTCATGTCGCTCGCAGCTTCAGCCTCGACGCTCATCGCTTCACTCCTGACGTCGCTCCCACCT
TTGGCCTTGTCCGAAATCGACATTCATCGCTTTGCTCCTCATGTAGCCCCCCACCTTCGGCTCCGTCCGGAGCTGGTTGA
CGCCAACAAAAATTGTGGGCATCTTCTTGCTTTTAAAAACCATTATGACACTCATCGCATAGAACAATAGGACCAAAACC
TGGGGCGCTTCTTGCTTTTAAAAACCATTATGACATTTTTAAAACCAACAATCACACAACAAGTGTCGGTTTAATTGCTC
CATTGGTTATCTTTTTTAGTAATCAACCTGGCCTTATTAATTCACTACAAAAACTATGACTGATACAAGAAAC
>chr1B_3
--GCACCGGTTGCAGCTTT-TCTGCTGCCGGTTGCAACAAAAAAATCACAGTAGCCGGATGCATC-AAAAAAATGTTTGA
AGCTTTTCAAAATTAGGT-----GCTTTGCATGTCAACGATTGCAGCTTTTTGTCATGTG-GTCGCTGGTTGAATCTTTA
TATGAAGCCGGTTAAAGATTTCTTTAATGCGGGGTGAAGCTTTTCAGTTCAACAATTGAAGCTCCTCAATTTAATGGATG
CAGCTTTTTTGTCCTCGGTGCCCCGGCGATCAGTTTCTTCGTATTTTC-GGTTGAAGCTTTCCCGTCGCTGGTTGTAGCT
TTTCAGGCCACC--------------------------------------------------------------------
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------------------GATTGCAGCTTTTGTTGC-GGG-AGTGCGCCGGCGACCAGCATCTCTGTTTGTCTTTTGAAA
CTTTTTATGTTGCCGGTTGAAGCTATTTGGGTCATCGGTTGTAGCATTTTGCGCTGCCGGTTGCCGCTTCTCTCACGCGC
GGCCACCAGGCGGCGACGCGGCCATGGCGATGAGA-GCAGCCATGCAAACGGCCCAGCAGCGTTGCCCCCGAGGGGTGCA
CGAAAAGCACAGGAGGCAGGAGCTAATGGCCGGCCTGGATCCATGGAGTTTTCTGCTTGGGCAATCGC---GAGGAAGGA
---GTGGATGGAGGCGTTGGGGAGAAGATAAGGTATATGTGTTGCCTTCCTTGTGGCTAGCGCCAGCGAGGCAAAAGCGA
CCGGCCAGAGCGTTCCGCCGGCGCACCGCGCGTAAACACTTCC-------------------------------------
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>chr4B_8
-------GGTTGTAGCAAAATCTGGCACCGGTTGCAGC-AAAAAATCACAGTAGCCAGATGCATCAAAAAAAATGTTTGA
AGCTTTTCAAAATTAGGTTTGAAGCTTTGCATGTCAACGATTGCAGCTTTTTGTCATGTG-CTCGCTGGTTGAATCTTTA
TATGAAGCCGGTTAAA-ATTTCTTTAATGCGGGATGAAGCTTTTCAATTCAACAGTTGAAGCTCCTCAATTTAATGGATG
CAGCTTTTTTGTCCTTGGTGCCCCGGCGATCAGTTTCTTCGTATTTTC-GGTTGAAGCTTTCCCGTCGCTGGTTGTAGCT
TTTCAGGCCACC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GATTGCAGCTTTTGTTGC-AGG-AGTGCGCCGGCGACAAGCAACTCTGTTTGTCTTTTGAAA
CTTTTTATGTTGCCGGTTGAAGCTATTTGGGTCATTGGTTGTAGCATTTTGCG-TGCCGGTTGCAGCTTCTCTCACGCGC
GGCCATCAGGCGGCGGCGCGGCCATGGCGATGAGA-GCAGCCATGGAAACGGCGCAGCAGCGTTGTCCCCGAGGGGTGCA
CGAAAAGTACAAGAGGCATGAGCTAATGGCCGGCCTGGATCCATGGAGTCTCCTGCTTGGGCAATCGC---GAGGACGGA
---GTGGATGGAGGTGTTGGGGAGAAGATAAGGTACACGTGTTGCCTTCCCTGTAGCTAGCGCCAGCGAGGCGAAAGCGA
CCGGCCAAAGCGTTCCGCCGGCGCACCGCGCGTAAACACTTCCC------------------------------------
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-------------------------------------------------------------------------
>chr7D_43
--------------------------------------------ATCGCAGTAGTCGGATGCATAAAA---AATGGTTGA
AGCTTTTCAAAACTAGGGTTTAAGCTTTTCATGTCAATGATTGCAGCTTTTTGTTTGTATACTCGCGGGTTGAAGCTTTC
TATGAAGCCGGTTGAAGCTTTCTATAAAGCGGGATGAAGCTATTCAATTTAACAGTTGAAGCTTC-CAATTCAATGGATG
CAGCTTTTTTGTGCTCGGTGCCCCGGCGACCAGCTTCTCCGTATTTTC-GGTTGAAGCTTTCCCGTCGCTGGTTGTAGCT
TTCCAGGCCACC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------AGTTGCAGCTTTTGTTGC-AGG-AGTGCGCCGACGACCAGCATCTTGGTCTGTCTTTTAAAA
CTTTTTATTTCGCCGGTTGAAGCTATTTTTGCCACCGGTTGTAGCATTTTGCGCTGCCGGTTGCAGCTTCTCTCAAGCGC
GGCCATGGGACGATGACGCGGCCATGGCGAAGAGC-CCGACCATGGAATGGCAATGTTG-------CCCCGAGGGGCACA
CGAACAACACAGGAGACAGGAGTTGAAGGCCGGCCTGGATCCATGGAGTTTGCTGCCCGGACGGTCGC---GAGGAAGGA
---GTGGATACAGGCGTTGGGGAGAGGATAAGTTACACGTGTTGTCTTTCTGGTGGTTAGCGCCGCG-------------
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-------------------------------------------------------------------------
>chr7B_43
--------------------------------------------ATCGCAGTAGTCGAATGCATAAAA---AATGGTTGA
AGCTTTTCAAAACTAGGGTTTAAGCTTTTCATGTCAACGATTGCAGCCTTTTGTT-----------TGGTTGAAGCTTTC
TATGAAGCCGGTTGAAGCTTTCCATAAGGCGGGATTAAGCTTTTCAATTCAACAGTTGAAGCTTC-CAATTCAATGGATG
CAGCTTTTTTGTGCTCGGTGCCCCGGCGACCAGCTTCTCCGCATTTTC-GGTTGAAGCTTTCCCGTCGCCGGTTGTAGTT
TTCCAGGCCACC--------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------GGTTGCAGCTTTTGTTGC-AGG-AGTGCGCCGACGACCAGCATCTTGGTCTGTCTTTTAAAA
CTTTTTATTTTGCCGGTTGAAGCTATTTTTGCCACCGGTTGTAGCATTTTGCGCTGCCGGTTGCAGCTTCTCTCACGCGC
GGCCATGGGACGACGACGCGGCCATGGCGAAGAGCCCCGACCATGGAATGGCAATGTTG-------CCCCGAGGGGCGCA
CGAACAACACAGGAGGCAGGAGGTAAAGGCCGGCCTAGATCCATGGAGTTTGTTGCTCGGGCTGTCGC---GAGGAAGAA
CGGGTGGGTACGGGCGTTGGGGAGGGGATAAGGTACACGTGTTGTCTTTCTAGTGGTTAGCGC-----------------
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>chr6D_64
AAAC--------------------------------------------------------------AA---AATGGTTGA
AGCTTTTCAAAATTAGGTTTGAAGCTTTGCATGTCAACGC------------GTCATGTG-CTCACTGGTTGAAGCTTTA
TATGAAGCCGGTTGAAGCTTTCTTAAATGCGGGATGAAGCTTTTCAATTCAATAGTTGAAGCTCCTGAATTTAATGGATG
CAGCTTTTTTGTGCTCGATGCCCCGGTGATCAGTTTCTTCGTATTTTC-GATTGAAGCTTTCCCGTCGCCGGTTGTAGCT
TTCCAGGCCATC--------------------------------------------------------------------
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------------------AGTTGCAGCTTTTGTTGC-GGG-TGTGCGCCGGCGACCAGCATCTCTGTTTGTCTTTTGAAA
CTTTTTATGTTGCCGGTTGAAGCTATTTGGGTCATCGGTTGTAGCATTTTGCGCTCCCGGTTGCAGCTTCTCTCACGCGC
GGCCATCAGGCGGCGGCGCGGCCATGGAGATGAAC-GCAACCATGGAAACGGCGCGGCAGCGTTGCCCCCGAGGGGCGCA
CGAACATCACAGGAGGCAGGAGCTGATGGCCGGCATGGATCCATGGAGTTCTCTGCCTGGGCAATCGCGAGGAAGAAGGA
---GTGGATGGAGGCGTTGGGGATAGGATAAGGTACACGTGTTGCCTTCCTGATGGCTAACGCCAACGAGGTGAAAGCGA
CCGGCCCGAGCGTTCCGCCGGCGCTCCGCGCGTAAACACTTCCCTAATATAAG---------------------------
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>chr7B_166
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---------GGTTGAAGCTTTTTTTAATGCGGCATGAAGCTTTTCAATTCAACAGTTGAAGCTCCTTAATTTAATGGATG
CAGCTTTTTTGTGATCGGTGCCCCAGCGATCAGTTTCTTCGTATTTTC-AGTTGAAGCTTGTCCATCACCGGTTGTAGCT
TTTTAGTCCACC--------------------------------------------------------------------
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------------------GGTTGCAGCTTTTGTTGC-GGG-AGTGCGCCGGCGACCAACATCTTCTTTTGTCTTTTGAAA
CTTTTTCTGTTGCCGGTTGAAGCTATTTGGGTCATCGGTTG----------------------CAGCTTCTCTTGCTCGC
GGCCATCAGGCGACAGCGCGGCCATGGCGATGAGC-GCAGCCATGGAAACGGCGCAGCAGCATTGCCCCCGATGGGCGCA
TGAACAGCACAGGAAGCAGGAGCTGATGGCCGGCCTGGATCCATGGAGTTTCCTGCCTTGGCAATCGCGAGGAAGAAGGA
---GTGGATGGAAGCGTCGGGAAGAGGATAAGGTACACGTGTTGCCTTCCTGGTGGCTAGCGCCAGCGAGGCGAAAGCGA
CCGGCCCGAGCGTTCCGCCGGCGCACCGCGTGTAGACAATCCCA------------------------------------
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>chr2A_166
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---------GGTTGAAGCTTTCTTTAATGCGGGATGAAGCTTTTCAATTCAACAGTTGAAGCTCCTCAATTTAATGGATG
CAGCTTTTTTGTGCTCGGTGCCCCGGCGATCAGTTTCTTCGTATTTTTTGGTTGAAGTTTTTTCATCGCCGGTTTTAGCC
TTCCAGTCCACCGGTTGCAGCTTTTTTGTGCTCGGTGCTCGGTGCCATAGCTTCAACCGGCGTTGAAAGAATGGATGTAG
CAAAAAACTATGGACGGTAGGAGCAAAAATCCACATGGTTGAAGCTTTCTTTAATGTGGGATGAAGCTTTTCAATTCAAC
AGTTGAAGCTCCTCAATTGAATGGATGCAGCTTTTTTGTGCTTGGTGCCCCGGCGATCAGTTTCTTCGTAATTTTTTGTT
GAAGCTTTTCCATCGCCGGGTTGCAGCTTTTGTTGC-GGGAAGTGCGCCGGCGACCAGCATCTCCGTTTGTCTTTTGAAA
CTTTTTATGTTGCCGGTTGAAGCTATTTGGGTCATTGGTTGTAGCATTTTGTGCTACCGGTTGCAGCTT-TCTCGCGCGC
GGCCATCAGGCGACGGCGCGGCCATGGCGATGAGC-GCAGCCATGGAAACGACGCGGCAGCGTTGCCCCGGAGGAGCGCA
CGAACAGCACATGAAGCAGGAGCTGATGGCCGGTCTGGATCCACGGAGTTTCCCGCATGAGTAATCGCGAGGAAG---GA
---GTGGATGG-AGCGTTGAGGAGAGGATAAGGTACTCGTGTTGCCTTTCTGGTGGCTAGCGCCAGCGAGGCGAAAGTGA
CCAGCCCGAGCGTTCCGTCGGTGCATCGCGGGTAAACACTTCC-------------------------------------
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>chrUn_166
--------------------------------------------------------------------------------
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---------GGTTGAAGCTTTCTTTAATGTGGGATGAAGCTTTTCAATTCAACAGTTGAAGCTCCTCAATTGAATGGATG
CAGCTTTTTTGTGCTTGGTGCCCCGGCGATCAGTTTCTTCGTAATTTTT-------------------------------
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----------------------------------------------------------------------------TGTT
GAAGCTTTTCCATCGCCGGGTTGCAGCTTTTGTTGCAGGG-AGTGCGCCGGCGACCAGCATCTCCGTTTGTCTTTTGAAA
CTTTTTATGTTGCCGATTGAAGCTATTTGGGTCATTGGTTGTAGCATTTTGTGCTACCCGTTGCAGCTTTTCTTGCGCGC
GGCCATCAGGCGACGGCGCGGCCATGGCGATGAGC-GCAGCCATGGAAACGACGCGGCAGCGTTGCCCCGGAGGAGCGCA
CGAACAGCACATGAAGCAGGAGCTGATGGCCGGTCTGGATCCACGGAGTTTCCTGCCTGAGTAATCGCGGAGAAGAAAGA
---GTGGATGG-AGCGTTGAGGAGAGGATAAGGTACTCGTGTTGCCTTTCTGGTGGCTAGCGCCAGCGAGGCGAAAGCGA
CCGGCCCGAGCGTTCCGCCGGTGCATCGCGCGTAAACACTT---------------------------------------
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>chr5D_167
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----------GTTGAAGCTTTCTTTAATGTGGCATGAAGCTTTTCAATTCAACAGTTGAAGCTCCTCAATTTAATGGATG
CAGCTTTTTTGTGCTAAGTGCCCCGGCGATCAGTTTCTTCGTATTTTC-AGTTGAAGCTTTTCCATCACCGGTTGTAGCT
TTCCAGTCCACC--------------------------------------------------------------------
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------------------GGTTGCAGCTTTTGTTGG-GGG-AGTGTGCCGGCGACCAACATCTCCGTTTGTCTTTTGAAA
CTTTTTCTGTTGCCGGTTGAAGCTATTTGGGTCATCGGTTGTAGCATTTTGTGCTGCCGGTTGCAGCTTCTCTCGTGCGC
GGCCATCAGGCGACAGCGCGGCCATGGCGATGAGC-GCATCCATGGAAACGGCGCGGCAGCATTGCCCCCGATGGGCGCA
TGAACAGCACAGGAAACAGGAGCTGATGGCCGGCCTGGATCCATGGAGTTTCCTGCCTGGGCAATCGCGAGGAAGAAGGA
---GTGGATGGAGGCGTTGGGGAGAGGATAAGGTACACGTGTTGCCTTCCTGGTGGCTAGCGCCAGCGAGGCGAAGGCGG
CCGGCCCGAGCGTTCCACTGGCGCACCGCGTGTAAACACTTCCCATAAA-------------------------------
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>chr3A_743
AAAACA--------------------------------------------------------------------------
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-------------------------------------------------AAAGTGGTAACAAGACCAAGAACTTGGTGGA
GAGCATGCACGCGCTGATCATCCATTGCTTCGTCACAAAAGAAAAACCATCACCGACACTACCGATCTCT----GATCTC
TATGGTCAACGCAATATTCTTGGATGGCGCCTCGACGTCGTGCCCTGATGACTTGTGATGATGATAACATAGAAAACACA
AGCAGGTCAGAGTCCTCGAGCAAACATCAGCTCACACGTATGCCTGCATCGCCCGGCCGCCACCACCATACATGGGCATT
GCAAATCTAGCATTCTACCTCGCAACCTGACCTGCTCGCACCAATGGCAGCCGAAATGCGGCAACCCAAACCCCTCCACT
T--------------------------TCTGCGCGCTGGCGTGCACGGTGTCGGCGGGAGACGGTGGCAGCATGCCGCTG
GTCACCGCGATCACCAAGGACGCGGCCACCTCCCTCTACACCGCGCCGCTCAAGGACACTCAGCC------CCTCGTCCT
CGACCTCTCCGGCCCCATCGTCTGGACCACCTGCG---ACGGGCCCTCCCATGACACGCTCGACTGCAGCAGCGACGCCT
GCATGCGCGCGCACCGGTTCCAGCCGCCCAACTGCCCGCAGACCGGCTACGGCGAGCCCGACGCCCGCAGCCGCA-----
-ACCGCTGCAAGTGCACCACGCACCCGCACAACCCCGTCTCCGGCGACACCGCGTCGGGGGACGTGACGCGCGTCACGCT
CTCCGCCAACGCCACCGACGGGAAGAATCCTCTGTATCAGGTGTCGTTCACCGCCGTGGCGTCCTGCGCGCCGGGCTCGC
TCCTGGCGAAGCTGCCGGCGGGGGCGGCCGGCGTCGCGGGCCTCGCGGGCCTCGCGCGCTCGGGCCTCGCGCTCCCGGAG
CAGGTCGCGGACACGCAGAGGGTCGGTAACAAGTTCGCGCTCTGCCTTCCCAGCGCCGGCTCCGGCG---CCGGCGTGG-
--------CCATCTTCGGCGGGGGCCCGCTCTTCCTC---CTGCCGCCGGGCCGGCCAGACATCAACGCGACCCTGGCCG
GGTACACGCCGCTGCGCAAGCACGTCGAGT---CCCCCGGGTACTACATCTCGGCCGACAAGGGCATCGCCGTGAACCAG
GCCCGGCTGCAGCTCGACGACGGGTACGGCGCGCCGTTGGTTCTCGGGCTGTGCTCCACGATCCCGTACACGGCGCTCCG
GCCCGACGTATACCGTGCGTTCATCAAGGCGTTCAACACGGCCACG-----GCGGGGAGGGCGAGGATCA----------
-----------CGCCGGCGGTGGCGCCGTTCGAGCTGTGCTACAACTCGACGGAGCTGGGGTCGACGCGGCTGGGCTACG
CCGTGCCGCAGATCGACCTGATGCTGGAGGGCGGCAAGAACTGGACGTTGTTCGGCGGCAACTCGATGGTGCAGGTGAAC
GA---CAACACGGCGTGCCTCGCATTCGTGGAGATGAAGCAGGAGGAGGTGGACAAGCATGGCGGGT------CGCCGGC
GGCGGTGATCGGAGGGTTCCAGATGGAGAACAACCTGCTAGTGTTCGACGAGGAGAAGCAGCGGCTCGGTTTCAGCTCGC
TGCTGTGGGGCAGGCAGACGACGTGCAGCAACTTCAATTTTACCATGGCTGCCTAGTGCCTAGCTGGTGGTTTTATGCCA
TTGTGTGCTGCGTGGTTGTATGAGCATTGTGGTTTTTCATAGTGATGATCGTTTCTCTGAAACAA-AACATGTCACCTGT
AAGATTTCTATATTCACCACATAATA-TGAACAATAAACT----------------------------------------
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>chr3D_744
AAAAG---------------------------------------------------------------------------
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--------------------------------------------------AAGTGGTAATAAGACCAAGAACTTGGTGGA
GAGCATGCACGCGCTGATCTTCCATTGCTCCATCACAAAAGGAAAATCATCACCGACACCACCGATCACT----AATCTC
TATAGTCAACCCAA---TCTTGGATGGCGCCTCGACGTCGTGCCCGGATGACTTCCGATGATGATAACATAGAGAACAC-
------TCAGAATCCTCCAGCAAACATCATCTCACACGTATGCCTGCATCGCCCGGCCGCCCCCACCATAAATGAGCTTT
GCAAATCTAGCATTCTCGCTCGCAACCTGACCTGCTCGCACCAATGGCAGCCGAAATGCGGCAACCCAAACCCCTCCACT
TCCTCCTCCTCCTCGCCACCGCCTCGCTCTGCGCGCTGGCGCGCACGGTGAAGGCGGCAGGCGGCGGCGGCATGCCGCTG
GTCACCGCGATCACCAAGGACGCGGCCACCTCGCTCTACACCGCGCCGCTCAGGGACAACCGCCC------GCTCGTCCT
CGACCTCTCCGGCCCCATCGTCTGGACCACCTGCG---ACGGGCCCTCCCATGACACGCTCGACTGCAGCAGCCACGCCT
GCATGCGCGCGCACCGGTTCCAGCCGCCCAACTGCCCGCAGACCGGCTACGGCGAGCCCGACGCC------CGCA-----
-ACCGCTGCAAGTGCACCGCGCACCCGCACAACCCCGTCTCCGGCGACACTGCGTCGGGGGACGTGACGCGCGTCACGCT
CTCCGCCAACGCCACCGACGGGAAGAACCCTCTGTATGAGGTGTCCTTCACCGCCGTGGCATCCTGCGCGCCGGGCTCGC
TCCTTGCGAAGCTGCCGGCGGGGGCGGCCGGCGTCGCGGG---------GCTCGCGCGCTCGGACCTCGCGCTCCAGGCG
CAGGTCGCGGACACGCAGAAGGTCGGTAGCAAGTTCGCGCTCTGCCTCCCGAGCGCCGGCTCCGGCG---CCGGCGTGG-
--------CCATCTTCGGCGGGGGCCCGCTCTTCCTC---CTCCCGCCGGGCCGGACAGACGTCAACGCGACCCTGGCAG
GGTACACGCCGCTGCGCAAGCACGGCGAGT---CCCCCGGGTACTACATCTCGGCCGACAAGGGCATCGCCGTGAACCAG
GCCCGGCTGCAGCTCGACGACGGGTACGGCGCGCCGTTGGTTCTCGGGCTGTGCTCCACGATCCCGTACACGGCGCTCCG
GCCAGACGTGTACCGTGCGTTCATCAAGGCGTTCGATGCGACCACG-----GCGGAGAGGGCGAGGATCA----------
-----------CGCCGGCGGTGGCACCGTTCGAGCTGTGCTACAACTCGACGCAGCTGGGGTCGACGCGGCTGGGCTACG
CCGTGCCGCAGATCGACCTGATGCTGGAGGGCGGCAGGAACTGGACGGTGTTCGGCGGCAACTCCATGGTGCAGGTGAGC
GA---CGACACGGCGTGCCTCGCCTTCGTGGAGATGAAGCAGGGGGAGGCGGACAAGCAGGGCGAGT------CGCCGGC
GGCGGTGATCGGAGGGTTCCAGATGGAGAACAACCTGGTGGTGTTCGACGAGGAGAAGCAGCGGCTCGGCTTCAGCTCTC
TGCTCTGGGGCAGGCAGACGACGTGCAGTAACTTCAATTTTACCATGGCTGCCTAG------------------------
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>chr3B_1100
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----CCTCCTCCTCATCGTCGTCTCGCTGTGTATCCTGGCGTGCAC---GGTGGCGGGCGACGGCGGCGGCAGGCCGCTG
GTGACGGCCGTCAGAAGGGACGCGGCCACCTCCCTCTACAGCATCCCCGTCAATTCCGGCCGCCC------GCTGGTCCT
CGACCTCTCCGGCCCCATCGTCTGGTCCACCTGCGACGACTGCGCCTCCCACGACACGCTCGAGTACAACGACATCAACT
GCATGCGCGCTCACCGCTTCCACCCGCCCAACTGCCAGCATAACGGCTACGGCATGCCCGACGCG------CACAACCCC
TACCGCTGCAAGTGCACCGCGCACCCGCACAACCCCGTCTCCGGCGACACCGCGTCGGGGGACATGACCCGCGTGGTGCT
CTCTGCCAACGCCACCGATGGCAGAAACCCTTTGGGCCCGGTGTCGTTCACCGCCGTGACGTCCTGCGCGCCGGATTCCC
TGTTAGCGGGGCTGCCGGCGGGGGCCGTCGGCGTCGCGGG---------GCTCGCGCGCTCCGGCCTCGCGTTTCCCGCT
CAGGTCGCGCGCACGCAGGGCGTGGCTAACTCGTTCGCGCTCTGCCTCGGGAACGGCGAAC---GCG---ACGGCGTCGC
CATCTGGCCCATCTTCGGCGGGGGCCCGCTCTTCG---------CGGCGAACGGGCGGTCCATCACGGACATGCTGCGCG
GCGACACCCCGCTACGCAAGCACGGGGAAT---ACCCCGGCTACTACGTCTCGGCCAGCAGGGGCGTC------------
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>chr3B_1118
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----------------------CTCGCTCTGTGTGCTTGCATGCAC---GGTGGCGGGCGACGGCGGCGGCAGGCCGCTC
GTGACGGCCGTCACAAGGGATGCCG-CACCTCCCTCTACACCATCCCCGTCAAGTCCAGCCGCCCGCTGCCGCTGGTCCT
CGACCTCTCCGGCCCCATCGTCTGGTCCACCTGCGACGGCGGCGCCTCCCACGACACGCTCGAGTGCAACAACATGGACT
GCATGCGCGCGCACCGCTTCCATCCGCCCAACTGCCAGCATACCGGCTACGGCATGCCGGACGCC------CACAACCCC
TACCGCTGCAAGTGCACCGCGCACCCGCACAACCCCGTCTCCGGCGACACCGCGTCAGGGGACATGACGCGCGTCACGCT
CTCCGCCAACGCCACCGACGGAAGGAACCCGTTGGGCCCGGTGTCGTTCACCGCCGTGACGTCCTGCGCGCTGGACTCCT
TGTTAGCGGGGCTGCCGGTGGGGGCCGTCGGCGTCGCGGG---------GCTCGCGCGCTCCGGCCTCGCCTTCCCCGCT
CAGGTCTCGCGCACGCAGGGCGTCGCTAACTCGTTCGCGCTCTGCCTCCCAAGCGG------CCAAGGAAACGGCGTCG-
--------CCATCTTCGGCGGTGGCCCGCTCTTCG---------CGGCGAATGGGCGGTCCATCACGGAGTTGCTTGGCA
GCAGGACCCCGCTCCGCAAGCACGGGGAAT---CCCCCGGCTACTACATCTCGGCCAGCAGGGGCATCGCCGTGGACGGA
GCGCGGGTGCCGCTGGACTCGTACGCAC------CTCTCACCATTGGCTTCTCCACGACGATCCCGTACGCGGAGCTCCG
CCACGACGTGTACCGCCCGCTCATCAACGCGTTCGACCAGGCCATG-----GAACGCCAGGGTGCGATTACTACCGGTGC
GAGGGTCCCCTCACCGGCTGCGGCGCCGTTCGAGCTGTGCTACAACTCGTCCAGGCTTTCGCCGACGCGGTTCGGCTACT
TTGTGCCAACGGTCGAGCTGATGCTGGAAGGCGGCAGGAACTGGACGGTGTTCGGCATCAACTCCATGGCGCAGGTGAAC
---CGCGCCACGGCGTGCTTCGCTTTCGTCGAGATGAAGGCGGGGGACAAGTCCTGGTATGGCGGCGTTGCCGCGCCGGC
CGTGGTGCTCGGAGGGTTTCAGATGCAGCAGAACCTGCTAATGTTCGACGAGGAGAAGCAGACGCTCGGGTTCA------
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>chr3D_1118
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----------------------CTCGCTCTGTGTGCTTGCGAGCAC---GGTGGCGGGCGACGGCGGCGGCAGGCCCCTG
GTGACGGCCGTCACAAGGGACGCCGCCACCTCCCTCTACACCATCCCCGTCAAGTCCGGCAGCCC------GCTGGTCCT
CGACCTCTCCGGCCCCATGGTCTGGTCCACCTGCGACGACGGCGCCTCCCACGACACGCTCGAGTGCAACAGCATCGACT
GCATGCGCGCGCACCGCTTCCACCCGCCCAACTGCCAGCATACCGGCTACGGCATGCCCGACCCC------GGCAACCCC
TACCGCTGCAAGTGCACCGCGCACCCGCACAACCCCGTCTCGGGCGGCACCGCGTCAGCGGACATGACGCGCGTCACGCT
CTCCGCCAACGCCACCGACGGCAGGAACCCTTTGGGCCCGGTGTCGTTCACCGCCGTGACGTCCTGCGCGCCGGACTCCC
TGTTAGCGGGGCTGCCGGCGGGGGCCGTCGGCGTCGCGGG---------GCTCGCACGCTCCGGCCTCGCGTTCCCCGCT
CAGGTCGCGCGTACGCAGGGCGTCGCCAACTCGTTCGCGCTCTGCCTCGGGAACCGCGAAC---GCG---ACGGCGTCG-
--------CCATCTTCGGCGGGGGCCCGCTCTTCG---------CGGCGAACGGGCGGTCCATCACGGAGATGCTGGGCG
GCGACACCCCGCTCCGCAAGCACGGGGAAT---CCCCCGGCTACTACGTCTCGGCCAGCCGGGGCGTCTTCGTCGACGGA
GTGAAGGTGCCCCTGGACACGTACGCAC------CGCTCACCATTGGCTTCTCCACGACGACCCCGTACGCGCTGGTACG
CCGCGACGTGTACCGCCCGCTCATCGACGCGTTCGACCAGGCCATG-----GAACGCGACGGTGCGATTACCGCCGGAGC
GAGGGTCCCCTCCCCGGCCGGGTCGCCGTTCGAGCTGTGCTACAACTCTTCGAGGCTGTCACTGACGCGGTTCGGCTACT
TCGTGCCGACGGTTGGCTTTGGGCTGGAGGGCGGCTCGGGCTGGGCGGTGCAGGGCATCAACTCCATGGCGCTGGTGATC
GGACGCCCGACGGCGTGCTTCGGTTTCGTGGAGATGAAGGAGGGGGACAAGGCCGGCTATGGCGGCGGTCCGGCGCCGGC
GGTGGTGCTCGGAGGGTTGCAGATGGAGGAGAACCTTGTGGTGTTCAACGAGGAGAAGCAGACGATGGCCTTCACCGGGC
AGATCAACGGCAGAGGGCTCTTCTGCAGCAACTTCAATTTTACCGTGCCCGCCTAG------------------------
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>chr3A_1583
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----------------------------CGGCGTGGCGGG---------GCTCGCACGCTCCAGCGCATCGTTCCCGGCC
CAGGTAGCGAGCACGCAGAAGGTGGCCAACTCGTTCGCGCTCTGCCTCCCGAGCAG------CGGCG---TGGGCGCGG-
--------CCATCTTCGGCGGCGGTCCATTCTTCCTAGCTCCCCCGGCGGACCGGCCGGCCATCACGACGCTCCTCTCCG
ACGGGGTCCCGCTCCGCCAGCCCTTTTCCGGGAACCCCGGCTACTTCGTCTCAGCCACCAACGGCATCGCCATCGACGGG
ACGCGCGTGGCCGTCTCCGGCTCCGGCG------CGCTCATCGTCGGCCTCTCCACCACGATCCCCTACGCGCAACTCCG
CAGCGACGTGTACCGCCCCTTCATCACGGCCTTCGACCGCGCCATGGGCTCGAGCGCGAAGGTGG---------------
--------------CGGCCGTGGCGCCGTTCGAGCTGTGCTACGACTCGTCCAAGCTGTCGCCGACGCTGTCGGGCTACT
CCGTCCCGCAGGTGGACGTGATGCTGGAGGGCGGGACGAACTTCACGGTGGTGGGCGGCAACTCCATGGCGCAGGTGAAC
---AGCGGCACGGCGTGCTTCGCGTTCGTGCAGGCC--------GGAGGCGGCACTGGGGGCG-------CGACGCCGGC
GGTGGTGATCGGGGGGTTCCAGATGGAGAACAAGCTGGTGGTGCTCGACAACGACAAGCAGACGCTCAGCTTCACCCCGT
ACCTCCCAGCCAGGGGGTTCTCCTGCAGCAACTTCAACTTCACCAGGGCGGGCTAG------------------------
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>SNPs
S----S--------------------------------------------------------------------------
---------------------------------------S----------------------------------------
------------------------------------------------------------S---S---------------
S----------------------S--------S------S-----------------------SSSSSS-----------
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-----------------------------------------------------------------------------S--
--------------------------------------------------------------------------------
------------------------S-----------------------------------S-------------------
----------------------------------------S-S-S---------------------S-------------
--------S-----------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S--------------------------------------------------------------SSSS------
-----------------------------------------------------S--------------S----------S
---------------------------------------------------S------------------S---------
-------------S------------------------------S----------------------S------------
SS--------------S----------------S---S-------------------------S----------------
---------------------------------------------------S----------------------------
--------------------------------------------------------------------------------
---S-----------------------------------------------------S----------------------
---------------------------------------------S----------------------------------
--------------------------------------------------------------------------SS-S--
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------S---------------------------------------------------------------
----S---------------S--S------S-S-----------------------------------------------
--------------------------------------------------------------------------------
-----------------------S------------------S-------------------------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
--------------------------------------------------------SS-SSSSSS---------------
----------------------S--------S-----SSS-SSSSSSSSSS-----------SSSS---S--S--S-S--
-------S---------SS-----S-S-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1111
--------------------------------------------------------------------------------
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---------------------------------------------------ACCGACACCACCGATCTCTA---------
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>reverse_3119
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------AC
GAACAGATAAGGCCCACG--------------------------------------------------------------
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-------------------------------------------------------------------------
