>input_sequence_50423
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-----------AGTAGCTATAGTGGTACTGGTAGAGTGG--------TACTAGCTCAGAAAGTTGTAGCAAATCGTGTGT
CGTGCCATGTCGCTACGCCGCAGTTCGGCGGCTGCGCTCGCGGCGCTGCTGGCGCTGGCGGTGCTGCTGGGCACGTCGGC
G------GACGATGGCGGCCAG------CCCATCGTGGCGCGCATCAGCAAGGACACCTCCACCCCCACCCCCCTCTACA
CTATCGCCATCAAGGTCGGCGGGGTGCCGCTCCTGCTCGACCTCGGCGGCCCGATGCTCTGGCTCGCCAACTGCCCCACC
CCGCACCGCATCATTCCATGCGTCTCCCACGACTGCGACGAGGTCTCCACTACATACCGCCCGCCTGGCTGCCCGAAGCC
CAGCCTTCGCGGAGACGGG------CCGTGCGCCTGCCCCGCCTACCCGCGCAACCCGGTCGACGGGCGCTGCCGCTCCG
ACGACGCCACCACCATCACGCTCGCCGCCAACACCACGGACGGCCAGAACCCGCTCCTCCCCGTCATCTTCCGCGCCGTC
GGGTCCTGCGCGCCGGGGGAGCTCCTGGAGTCGCTTCCGGCGGGGGCGGCCGGCGTTGCGGGGCTCTCCAGGCTGCCGCT
ATCGCTACCGACCCAGTTCGCGTCCTTGCTCAAGGTGGCGAACGAGTTCGCCCTGTGCCTGCCCAGCGGCGGCGACGGCG
TGGCAGTCTTCGGTGGCGGCCCGTTCCAGCTCCTGGCCGCGCCGCCCGTGGAGCTCGCCGAGCGGCTTCGCGAGAACCCG
CTCCCTCTCCTCAAG-----------CACCCCTACAACGGCGGCTACTACTTCGGCATCACCGGCGTCGCCGTGAACCAG
CAGCGCGTGCCGACGCCAGACGGCGTCTTCGACCTCGACGCCGGCAGCGGCACGGGCGGCGCCGTCTTCAGCACCGTCAC
G-----CCCTACACGGCGCTCCGCTGGGACATCTACTGGCCGCTCCGCAACGCGTTCGACGTGGCCACGAGTGGTA-TCG
CGCGCGCGGACAAGGTGGCGCAGTTCGACTTGTGCTACCAGGCGTCCGCGCTCACGGTGACCCGGGTGGGCTACGCCGTG
GCCAGCATCGAGCTGATGCTGGACGGAGGCCGGAACTGGACGCTGCCCGGTGCCAGCTCGCTCGTGCAGGTGAACGAGCA
GACAGTGTGCTTCGCGTTCGTCCAGATTTCGTCGTCCATGCCGGCGGCGATCGACTCGCCGGCGGTTATCCTCGGGGGGC
ACCAGATGGAGAACAACCTGCTGATGTTCGATCTGGTGAAGGAGACGTTCGCGTTCAGTGGGCTGCTCCTCGGAATCCGC
ACTACATGCAGCAACTTCAACTTCACCATGGGGAGTTCTTATTAGAAGAGTGTCATGCATGCACTGATCTTGCATGTCTA
GCACCACCGCCACCATGTTCATTTGTGCTCGATGTAGACTGGTT---AAGGGAAGTACTGTCGTAGTGTTGTGTTCGTAG
TAACAAGAATAAA-------------------------------------------------------------------
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--------------------------------------------------------------------
>chr3A_1_TraesCS3A01G468500
GACGGTGGCTGCTGGGGGTTGGCCGGCGGGGCAGTGCCTCTGGCTGGTGACGCCATGGCTCCATGGAGGGTGGCACGTCG
GCCGCCATGGCTGCAGGCCGAGGCTGGCGGCGCGTTGGGGAAGAAGAGAGCCACGGTGA---GAAGAGGTTTCGGGGAGA
GGGGGCAGTAGTGGCGGCGAT----------------------GAGGTGGAAGGAGAAGCGACCGGCGCAGGTGGAAGGA
GAGGCGGCCAGTGCTTCGTCGACCTCGTGTGGAAGAAGAGAGACAGGAGGAGTGAAGAGAATGTGGAAGAGAGCTGACAT
ATGGACCCCACATGTCAGTTAACAGTCAAACAAACGGGCAAACAATCAATTTTCTTACGTGTGGGCCCCAACTGTCATAA
TCACGATCAATTATAAAGCACGGGATGATTTGGGTTTTTTGAAATAGCCGACCCCTGACTTGGTAGTTACCAGCGGAAAA
AAATCAGTAGGTTTTTAAAACCCTAGCCCGACTTATAGTAGTTTTATG--------------------------------
--------------------------------------------------------------------------------
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-----------------------------CTATTCACCATAACTGCTTGGCCACTCAGATTTATATATGCTCTTTGGTGC
AGACAGTTCTTCCACAGCTCAGTTTTTTTTAAGCTGAAGAAGCGAATTGAAC---GGACAAGTCTCAAGCACGAGGCGAT
CTAGGATCTCTCCTC-----------------------------------------------------------------
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--------TATCCCTTGGGATTTGAGACTGGCTGCGGAGGAGCTTGCACAGCAGCTTCCAAGCCCACCTC----GGCTAC
AT-ACACGCACGAGGTATAGTGTGATCGGAAGTTGACCCCCGCGAATCTCGATGGCCTTGACAATGGCGATTGATTCGTC
GGAACTTGACGCCGCGAATCTCGATGGCCTTGACAATGGCGATATTAATTCGTCGGAACCTGCCATATCCGAACTCCCAA
GCTCCATCGAGCTCAAGTTGGCCCTCCACCACCCCAATGGCGCACGCCCGGCCCAAGCCAAATCACTCACGCC-------
--------------------------------------------------------------------------------
---------------------------TACTGGTCCTTCTGCTACTATATAAACACGCACGGCCACCC----------AA
AACCTTGCAACAGTAGCTATAGTGGTACTGGTAGAGTGG--------TACTAGCTCAGAAAGTTGTAGCAAATCGTGTGT
CGTGCCATGTCGCTACGCCGCAGTTCGGCGGCTGCGCTCGCGGCGCTGCTGGCGCTGGCGGTGCTGCTGGGCACGTCGGC
G------GACGATGGCGGCCAG------CCCATCGTGGCGCGCATCAGCAAGGACACCTCCACCCCCACCCCCCTCTACA
CTATCGCCATCAAGGTCGGCGGGGTGCCGCTCCTGCTCGACCTCGGCGGCCCGATGCTCTGGCTCGCCAACTGCCCCACC
CCGCACCGCATCATTCCATGCGTCTCCCACGACTGCGACGAGGTCTCCACTACATACCGCCCGCCTGGCTGCCCGAAGCC
CAGCCTTCGCGGAGACGGG------CCGTGCGCCTGCCCCGCCTACCCGCGCAACCCGGTCGACGGGCGCTGCCGCTCCG
ACGACGCCACCACCATCACGCTCGCCGCCAACACCACGGACGGCCAGAACCCGCTCCTCCCCGTCATCTTCCGCGCCGTC
GGGTCCTGCGCGCCGGGGGAGCTCCTGGAGTCGCTTCCGGCGGGGGCGGCCGGCGTTGCGGGGCTCTCCAGGCTGCCGCT
ATCGCTACCGACCCAGTTCGCGTCCTTGCTCAAGGTGGCGAACGAGTTCGCCCTGTGCCTGCCCAGCGGCGGCGACGGCG
TGGCAGTCTTCGGTGGCGGCCCGTTCCAGCTCCTGGCCGCGCCGCCCGTGGAGCTCGCCGAGCGGCTTCGCGAGAACCCG
CTCCCTCTCCTCAAG-----------CACCCCTACAACGGCGGCTACTACTTCGGCATCACCGGCGTCGCCGTGAACCAG
CAGCGCGTGCCGACGCCAGACGGCGTCTTCGACCTCGACGCCGGCAGCGGCACGGGCGGCGCCGTCTTCAGCACCGTCAC
G-----CCCTACACGGCGCTCCGCTGGGACATCTACTGGCCGCTCCGCAACGCGTTCGACGTGGCCACGAGTGGTA-TCG
CGCGCGCGGACAAGGTGGCGCAGTTCGACTTGTGCTACCAGGCGTCCGCGCTCACGGTGACCCGGGTGGGCTACGCCGTG
GCCAGCATCGAGCTGATGCTGGACGGAGGCCGGAACTGGACGCTGCCCGGTGCCAGCTCGCTCGTGCAGGTGAACGAGCA
GACAGTGTGCTTCGCGTTCGTCCAGATTTCGTCGTCCATGCCGGCGGCGATCGACTCGCCGGCGGTTATCCTCGGGGGGC
ACCAGATGGAGAACAACCTGCTGATGTTCGATCTGGTGAAGGAGACGTTCGCGTTCAGTGGGCTGCTCCTCGGAATCCGC
ACTACATGCAGCAACTTCAACTTCACCATGGGGAGTTCTTATTAGAAGAGTGTCATGCATGCACTGATCTTGCATGTCTA
GCACCACCGCCACCATGTTCATTTGTGCTCGATGTAGACTGGTT---AAGGGAAGTACTGTCGTAGTGTTGTGTTCGTAG
TAACAAGAATAAAGTTTTATGCTGGTGGCGGTTGCCACATATGTGGTGCTTGTGCTTT---------TGGGCGTGTTATG
CCCTAACAAGTGTTGTGCCATGAATGA-CTTATGCTTTGATCCCTTCTTGTTGTTCAACCCTTCCACTTG---TAGTTAT
TCTAGGGTTTTCTTCAGTTCCCCAGTCACCAATGAG--GGCTGGTGATGCTTAGGTCGTGTACATGTTTTCATGGTGTTT
TTTTTTTGTTTGGTCGCGCCTTTTTGTGATTGTTAATTAGCATGGTTCAGAAAGAAAAATGATACCAAATTGATACATTT
TTTTAACATGGTACAGAAGCGATCATACGTTCACCCCCATAAATACACGCACACCTACTTTTCTGAGCACCTACGAAAGA
CTGAGCTGGCACATCATTTTGAGATTTAACAAAGTCAACAAAGACACCTTTGTAGTCGATGGAAACGTCTCCTCCCACTG
AACGCACATCACGGGAAGGACTGAAATCTCTACTCCTATAAAAGACTCAGTTGGTGATGATGGTGTGTCTGCCATCCGTC
ATTTCTGACCATTAGATCTGCATCTAACGGCTCTGAGGTAAGTTGTGGCATTTTTGCAACAATAGCCCACTTCTCTACTC
CAATTTGCAGAAAACCCCTTATTATCTTGCAAGCAACCACATCCCTCCCTCACCTCATCAAAACAACCTGAGAAATATAT
TTGGAGTGAAACATAATATATTTTTAGTGGTATATGTATATCAAAACAAGAGTGTTTTGTTTCAAGTTTGTGAACAAGTA
CTATTCTACTTTGGATCCGTTGCAATGCACGGGCACATTGCTAGTAAATTCAGAAAAATGCGAGCGCCACTGTCCTTGAA
ACCATCCAACCACAAGTTGGTTCACCAAATTGATACGTATTGAAGGTAAATTGGCGACATTGTGCAAATATGTCCACTGC
GGGATCAAAGGCTTATTTATAAACTCCATGCTATCAAGGTTTTACCAGAATTTTACAAGGATACATGA
>chr3B_3
--CGGTGGCTGTTGGGGGTTGGCCGGCGGGGCAGCGCCTCTGGCCGGTGGCGCCA----TCCAAGGAGGGTCGCCCGTCG
GGCGCCATGGCTGCAGGCCGAGGCTGGCGGTGCGTTGGGGAAGAAGAGAGCCACGGTGAGGAGAAGAGGTCCCGGGGAAA
GGGGGCAGTAGTGGTGGCGGAGGAGCGGCTGGCCGACACCGACAAGGTGGAAGGAGAAGTGACCGATGCAGGTGGAAGGA
GAGGCGGCCGGTGCTCCGTCGACCTCGTGTGGAAGAAGAGAGGCAGGAGGAGTGAAGAGAATGAGGACGAGAGCTGACAT
GTGGACCCCACATGTCAGTTAACAGTCAAACAATCAG------------TTTTCTTACGTGTGGGCCCCAACTGTCATAA
TCACGATCAATTATAAAGCATTGGATGATTTGGGTTTTTTGAAACAGCTAATCCCTGACTTGATAGTTATCAGTGAAAAA
AATCG-GTAGTTCTTTAGAACCCTAGCCCGAATTGTAATAGTTTTATACTCCCTCCGTTCCTAAATATTTGTCTTTTTAG
AGATTTCAAATGGACCTGTGGTTGAGTTGGTTAAGTGGATAGTGGTATCCCCAACCCACCAGGGTTCAAATCCTGGTGCT
CGCATTATTCCTGGATTTATTTCAGGATTTCCGGCGATGCGCTTTCAGTGGGAGGAGACGTTCCCGTCGACGACGAGGCG
CCTACGGTGGCTTCGTAAATCTCAAGATGATATGCCGGCTCAGTCTCTCGGAGGTGCTCATAGGGGTAGGGTGTGCGTGT
GTGCGTTCATAGGGATGAGTGTATGCGCGTGTATATGAGCGCTTGTGTCTGTACTGATGCTAAAAAAATGGACTATTATA
TACGGATGTATATAGACATATTGTAGAGTGTAGATTCACTCATTTTGCTTCGTATGTAGTCATTTGTTGAAATCTCTAGA
AAGACAAGTATTTAGGAACGGAGGGAGTACTATTTACTCTAATTGATTGGCCACTCATATTTATATATGCTCTTTGGTGC
ATACAGTTCTTCCACAGCTCA-TTTTTTTAAAGCTGAAGGAGCGAACTGAACAGGGGACAAGTCTCAAGCACGAGGCGAT
CTAGGATCTCTCCTCTATCCAATATTTTAAATAACGCGCTACAAAATATAGTGAGGCCCTTCTCTAAATGCTACACAAAT
TATAGCGCGCTAATAGCGTGCTATATTTCAAAATAGCGTTTGCAAAAAAAATCAAATATATCTGAAAATAAAGTATTTAA
GCAACTAAATTTTTCATAGGAGCAAGCAATATATGCATCTGATAAAAGGAGTGAGAAAGCTAGTGGGAGAATCTGATAAA
AGGAGTGAGAAAGCTAGTGGTCGTGGGTTGGTTTTGGCCTGCTGGGCCTGCTGGGCTGTGCTTATTTCAGTTTTGCATGG
TCTGCACGTTATAACGTTACAACGTTACAACGTTATAGCGAGTGTAGCACGCTAATTACGTGATTAGCGCCGTAGCGTCT
GATTTTGTCAAGACGTAACGTCTTCCTTTCAAATATGTTATAACCGCATTATAACGGCGAAATAGTGTGCTATTTAAAAT
ATTGCCTCTATCCCTTGGGATTTGCGACTGGCTGCGGAGGAGCCTGCACAGCAGCTTCCAAGCCCACCTC--TCGGCTAC
GTAAAACGCACGTGGTG--GTGTGATCGGAAGTTGACCCC-GCAAATCTCGATGGCCTTGACAATGGCGACTGATTCGTC
GGAAGTTGGCGCCGCGAATCTCAATGGCCTTGACAATGGCGATATTAATTCGTCGGAACCTGCCATATCCTAACTCCCAA
GCTCCATCCAGCTCAAGTTGGCCCTCCACCACCCCAATGGCGCACGCCCA-----AGCCAA-------------------
--------------------------------------------------------------------------------
---------------------------------------------TATATAAACACGCACGGCCACCCGACTGTGATCAA
AACCTTGCCACAGTAGCTATAGTATTACTGAGATATAGTGTGGTAGTTAGTAGCTCACCAAGGTTTAGCAAATCGTGTGT
CGTGCCATGTCGCTCCACCGCAGCTCGGCGGCTGCGCTAGTGGCGCTGCTGGCGCTCGCGGTGCTGCTGGGCACGTCGGC
G------GACGATGGCGGCCAG------CCCATCGTGGCGCGCGTCAGCAAGGACG------CATCCACCGCCCTCTACA
ACATCGCCATCAAGGTCGGCGGGGTGCCGCTCCTCCTCGACCTCGCCGGCCCGATGCTCTGGCTCGCCAACTGCCCCACC
CCGCACCGCATCATCCCCTGCGTTTCCCACGACTGCGATGACATCTCTACTACGTACCGCCCGCCCGGCTGCCCGAAGCC
CGGCCTTCGCGGAGAAGGG------CCGTGCGCCTGCCCCGCCTACCCGCGCAACCCGGTCGACGGGCGATGTCGCTCCG
ACGACGCCACCACCATCACGCTCGCCGCCAATGCCACGGACGGCCAGAACCCGCTCTACCCGGTGACCTTCCGCGCCGTC
GGGTCCTGCGCGCCGGGGGAGCTGCTGGAGTCGCTTCCGGCGGGAGCGGCCGGCGTTGCGGGGCTCTCCAGGCTGCCACT
GTCGCTACCGACCCAGTTCAAGTCCTTGCTCAAGGTGGCGAAAGAGTTCGCGTTGTGCCTGCCCAGCGCCGGCGACGGCG
TGGCAGTGTTCGGCGGCGGCCCGTTCCAGCTCCAGGCCGCGCCGCCCGTGGAGCTCGCCGAGCGCCTCCGCGAGAACCCG
CTCCCGCTCGTCAAG-----------CACCCCTACAACGGCGGCTACTACTTCGGCATCACCGGCATCGCCGTGAACCAG
CAGAGCGTGGCCGCGCCGCCCGGCGTCTTCGACCTCGACGCCGGCAGCGGCACGGGCGGCGCCGTCTTCAGCACCGTCAC
G-----CCCTACACCGCGCTCCGCTGGGACATCTACTGGCCCCTCCGGAACGCGTTCGACGTGGCCACGAGCGGCA-TCG
CGCGCGCGGACAAGATGGCGCCGTTCGACTTGTGCTACCAGGCGTCCGCACTCACCGTGACCCGGGTGGGCTACGCCGTG
GCCAGCATCGAGCTGATGCTGGACGGAGGCCGGAACTGGACGCTGCCCGGCGCCAGCTCGCTCGTGCAGGTGAACAACAA
CACCGTGTGCTTCGCGTTCGTCCAGATGGCGTCGTCCATGCCGGCGGCGATCGATTCGCCCGCGGTCATCCTCGGGGGGC
ACCAGATGGAGAACAACCTGCTGATGTTCGATCTGGTGAAGGAGACGTTCGCGTTCAGTGGCCTGCTCCTCGGAATCCGC
ACTACTTGCAGCAACTTCAACTTCACCATGGGGAGTTCTTATTAGAAGAGTGTCACTGATCT-------TTGCGAGTCTA
GCGCCACCGTCACCACGTCCGTTTGTTCTCAATGTACGGTTAAG------------------------------------
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--------------------------------------------------------------------
>chr3D_83
--------------------------------------------------------------------------------
--CGCCATGGCTGCAGGCCGAGGCTGGCGGCGCGTTGGGGGAGAAGAGAGCCACGGAGAGGAGAAGAGGTTCTGGGGAGA
GGGGGTAGTAGTGGCAGCGGAGGAGCGGCCGGCCGACGACGACGAGGTGGAAGGAGAAGCGACCGGTGCAGGTGGAAGGA
GAGGCGGCCGGTGCTCCGTCGACCTCTTGTGCAAGAAGAGAGGCAGGAGGAGTG-AGAGAATGAGGAAGAGAGCTGACAT
GTGG-CCCCACATGTCAGTTAGAAGTCAAACAATCAG------------TTTTCTTACGTGTGAGCCCCAACTGTCATAA
TCACGATCAACT------------ATGATTTGGGTTTTTTGAAATAGCCGACCCCTGACTTGGTAGTTATCAGCAGAAAA
AAAATCGGTAGTTTTTTAAACCCTAGCTTGAATTGTAGTAGTTTTATG--------------------------------
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-----------------------------CTATTTACTCTAATTGCTTGGCCACTCAGATTTATATATGCTCTTTGGTGC
AGACAGTTCTTCCACAGCTCAGTTTTTTTAAAGCTGAAGGAGCGAATTGAACGGGGGACAAGTCTCAAGCACGAGGCGAT
CTAGGATCTCTCCTCTATC-------------------------------------------------------------
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-----------CCCTTGGGATTTGAGACTGGCTGCGGAGGAGCTTGCACAGCAGCTTCCAAGCCCACCTA----GGCTCC
GTAAAACGCACGAGGTG--GTGTGATCGCAAGTTGACCCC-GCAAATCTCGATAGCCTTAACAATGGCGATCAATTCGTC
GGAAGTTGACGCCGCGAATCTCAATGGCCTTGACAATGGCGATATTAATTCGTCGGAACCTGCCATATCCGAACTCCCAA
GCTCCATCGAGCTCAAGTTGGCCCTCCACCACCCCAATGGCGCACGCCCA-----AGCCAAATCACTCACGCC-------
--------------------------------------------------------------------------------
---------------------------TACTGGTCCTTCTGCTACTATATAAACACGCACGGC-----------GACCAA
AACCTTGCAACAGTAGCTATAGTGGTACTGGTAGAGTGG--------TAGTAGCTCACCAAGGTTTAGCAAATCGTGTGC
CGTGCCATGTCACTACGCCGCAGCTCAGCGGCTGCGCTCGCGGCGCTGCTGGCGCTGGCGGTGCTGCTGGGCACGTCGGC
G------GACGATGGCGGCCAGGGCCAACCAATCGTGGCGCGCGTGAGCAAGGACG------CCTCCACCTCCCTCTACA
CCATCGCCATCAAGGTCGGCGGCGTGCCGCTCCTCGTCGACCTCGCCGGCCCGATGCTCTGGCTCGCCAACTGCCCCACC
CCGCACCGCATCATCCCCTGCGTCTCCCACGACTGCGACGACGTCTCCACTACGTACCGCCCGCCTGGCTGCCCGAAGCC
CAACCTTCGTGGAGACGGG------CCGTGCGCCTGCCCTGCATACCCGCGCAACCCGGTCGACGGGCGCTGCCGCTCTG
ACGACGCCACCACGATCACCCTCGCCGCCAATGCCACGGACGGTCAGAACCCGCTCTACCCGGTCACCTTCCGCGCCGTC
GGGTCCTGCGCGCCAGGGGAGCTCCTGGAGTCGCTCCCGGCGGGAGCGGCCGGCGTCGCGGGCCTCTCAAGGCTACCGCT
GTCGCTACCGACCCAGTTCGCGTCCTTGCTCAAGGTAGCGAACGAGTTCGCGTTGTGCCTGCCCAGCGGCGGCGACGGCG
TGGCAGTCTTCGGCGGCGGCCCGTTCCAGCTCCTGGCGGCGCCGCCCGTGGAGCTCGCCGAGCGCCTCCGCGAGAACCCG
CTCCCGCTCCTCAAG-----------CACCCCTACAACGGCGGCTACTACTTCGGCATCACCGGCATCGCCGTGAACCAG
CAGCGCGTGCCGACGCCGGACGGCGTCTTCGACCTCGACGCCGGCAGCGGCACGGGCGGCGCCGTCTTCAGCACCGTCAC
G-----CCCTACACCGCGCTCCGCTGGGACATCTACTGGCCGCTCCGCAACGCGTTCGACGTGGCCACGAGCGGCA-TCG
CGCGCGCGGACAAGGTGGCGCCGTTCGACCTGTGCTACCAGGCGTCCGCGCTCACCGTGACCCGGGTGGGCTACGCCGTG
GCCAGCATCGAGCTGATGCTGGACGGCGGCCGGAACTGGACGCTGCCCGGCGCCAGCTCGCTCGTGCAGGTCAACGACAA
CACCGTGTGCTTCGCGTTCGTCCAGATGGCGTCGTCCATGCCAGCGGCAATCGACTCGCCGGCGGTCATCCTCGGGGGGC
ACCAGATGGAGAACAACCTGCTGATGTTCGATCTGGTGAAGGAGACGTTCGCGTTCAGTGGGCTTCTCCTCGGAATCCGC
ACTACGTGCAGCAACTTCAACTTCACCATGGGCAGTTCTTATTAGAAGAGTGTGT------CACTGGTCTTGCGAGTCTA
GCGCCACCGCCACCACGTTCGTTTGTGCTCGATGTAGACTTTGGTTCAAGGGAAGTACCGTCGTAGTGTTGTGTTCGTGG
TAACAAGAATAAAGTTTTATGCTAGTGGCGGATGCCACACATGTGGTGCTTGTGCTTTAGTCGTGGTTGGCCGTGTTATG
CCCTAACTAGTGTTACTAACTTGTGTCCCTTTTGCTTTGGTCCCTTCTT------CAACCCTTTCACTTAGTATAGTTTT
TCTAGGGTTCT-TTCAGTTAGCCAGTCACCAATGCTTAGGCTGGTGATCCCTAGGTCGTTTACAGGTTTTTATGGG--TT
GTTTTTTGTTTGGCCATGCATTTTTG------------------------------------------------------
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>chr3D_659
TTTGGGACTC----------------------------------------------------------------------
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------------------------------GCTGCGGAGGAGCTTGCACAGCAGCTTCCAAGCCCACCTCGATCGGCTAC
GT-AAACGCACGAGGTG--ATGTGATCGCAAGTTGACCTT-GCAAATCTCGATACCCTACGGCG----------------
-------------------------------------------ATAAATTCGTCGGAAGCCGCCCTATCCGAGCTCCAAA
GCTCCATCGAGTTCAAGTTGGCCCT---CCAACCCAATGGCGTACGCCCG-----CGCCAAATCACTCACGCCCTGTGTT
TGATTTTCGGCCGAAAAAAGTGGATTTCGGCCGAAAAAAGTGGATTTCGGCCTAGGGCGAAAAAAAGCTCAAACCGAAAA
TCAAAACACAGCTCACGCCCAGTAGCCTACTAGTACCTCTGCTACTATGTACAAGAGAATGCGACAACTACCAAGTC---
-------------------------------------------------------------GTTGTAGCGAATCA-----
------------------CGCTCCTGGGCGGCTGCGCTCGCGGCACTGCTGCCGCTGGCGGTGCTGCTGAGGACGTCGGC
CGAGGACGACAATGGCGGATCG------CCCATCCTGGCGCGCGTCAGCAAGGACG------CCTCCACCTCCCTCTACA
CCATGGCCATCAAGGTTGGTGGGGTGCCGCTCCTGCTCGATCTCGCCGGCCCGATGCTCTGGCTCGCCAACTGCCCCACC
CCGCACCGCACCATCCCCTGCGTCTCCCCCGACTGCGACGAGATCACTACTACGTACCGCCCGCCTGGCTGCCCGAAGCC
CCTCCCTGGCCCAGATGGG------CAGTGCGCCTGCCTCGCCTACCCGCGCAACCCGGTCGACGGACGCTGCCGCTCTG
CCGACGCCACCACCATCACGCTAGCTGCCAATGACACGGATGGCCAGAACCCGCTATTCCCGTTCCCCTTCCGCGCAGTC
GGGTCCTGCGCGCCGGGGGAGCTTCTGGCGTCGCTCCCGGCCGGTGCGGCAGGCGTCGCGGGGCTCTCAATGCTGCCGCT
GTCGCTACCGACCCAGTTTGCATCCTTGCTCAGCGTGGCGAAAGAGTTCGCGTTGTGCCTGCCCAGCGGAAGCGATGGCG
TAGCAATCTTCGGCGGTGGCTCGTTCCAGCTGCTCGCCGCGCCACATGTGGAGCTCGCCGAGCGCCTCAGACAAAACCCG
CTCCCGCTCCTCAAG-----------CACCCCTACAACGGCCGCTACTACTTCGGCATCAGCGGCCTTGCCGTGAACCAG
CAGCGCGTGCCCACACCGCTCGGCGCCTTCGACCTCCAAGGCAGCAGCGGCACGGGCGGCGTCGTGTTCAGCACCGTCAC
G-----CCCTACACCGCTCTTCGCTGGGACATCTACTGGCCGCTCCGCAACGCGTTCGACGCGGCCACGAGCGGCA-TCG
CGCGCGCGGACAAGGTG-CGCCGTTCGACATGTGCTACCAGGCGTCCGCGCTCACCGTGACCCGGGTAGGCTACGCCGTG
GCCAACATCGACATGATGCTGGACGGCGGGCGGAACTGGACGCTGCCCGGCGCCAGCTCGCTCGTGCAGGTGAACGACCA
GACGGTGTGCTTTGCGTTC-TCCAGATGGCGTCGTCCATGCCGACGGCAGCCGACTCACCGGCGGTCATCTTTGGGGGGC
ACCAAATGGAGAACAACCTTCTGATGTTCGATCTGGTGAAAGAGACGTTCGCGTTCAGTGGGCTGCTCCTCGGCATCCGC
ACTACGTGCAGTAACTTCAACTTCACCATGGGGAGTT-------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>chr3B_1157
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---------------------G------CCCCTCGTGGCGCGCGTCAACAAGGACG------CCTCCACCTCCCTCTACA
CCATCGCCATCAAGGACGGAGGGGGGCCGCTCCTCCTCGACCTCGCCGGCCCAATGCTCTGGGTCGCCAACTGCCCCTGC
ACGCACTGGGCCATCGGGTGCGGCGGCAGCGACTGCAATGGCATCCGCAATATGTTCACCCCGGATGTCTGCGATAGTGC
GGAATGGCCGGTGCAGGGGCAGGACCCGTGCATCTGCACCGCCTTGCCGTGCAACCCGGTCGACGGGCGCTGCGTCGCCG
CCCAAGCCACCACCATCTCGATCGCCGCCAACACCACGGACGGCAAGAACCCACTCTTCCCGGTCACCTTCCCCGTCGTC
GGGTCCTGCGCGCCGGGGGAGTTCTTGACCTCGCTCCCGGCGGGCGTGGCCGGCGTCGCGGGGCTTGCGAGGCTGCTTAA
CTCTCTGCCGTTGCAGGTCGCCCAGTGGTACCGCCTGAAGCAAGAGTTCGCGCTGTGCCTGCCCAGGGCTGGGGACGGCG
TGGCCGTCTTCGGCGGCGGCCCGTTCCAGCTCCTGGCCGCGCCAACCGTGGAGGTCGCCGATAGCCTCCGCAAGAACCCT
CTCCCGTTCCTCTTC-----------AACCCCAAAAACCGCGCCTACTACTTTACCATCACCGGCATCGCCGTGAACCAG
CAGCGCGTGCCCACGCCGTCCGGCGCCTTCGACATGGAA---AGGAGAGGCCAAGGCGGCGCCGCCTTCAGCACCGTCAC
G-----CCCTACACCGCGCTCCGCTGGGACATCTACTGGCCGCTCCGAAACGCGTTCGACGCGGCCACGAGCGGCA-TCG
CGCGCGCGGAGAAGGTGGCGCCGTTCGACATGTGCTACCAGGCGTCGGAGCTCGCAATGACCAGCGTGGGCTATGCCGTG
GCCAACATCGACCTGATGCTGGACGGAGGGCAGAACTGGACACTGCCCGGCGCCAGTTCGCTCGTGCAGGTGAACGACCA
GACGGTGTGCTTCGCGTTCGTTCAGACGGATTCGTCGGTGCCGGCACATGCTGAGTCGCCGGCGGTGATCCTCGGGGGGC
ACCAGTTGGAGAACAACCTGCTGATATTCGACCTGGACAAGGACACGTCCGCGTTCAGTGGGCTGCTCCTCGGCATCGGC
ACTACCTGCAGCAACTTCGACTTCAGCATGGGGAGTTC---TTAGAAGAGTGTCA-------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>chr3B_1157
--------------------------------------------------------------------------------
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---------------------G------CCCCTCGTGGCGCGCGTCAACAAGGACG------CCTCCACCTCCCTCTACA
CCATCGCCATCAAGGACGGAGGGGGGCCGCTCCTCCTCGACCTCGCCGGCCCAATGCTCTGGGTCGCCAACTGCCCCAGC
ACGCACTGGGCCATCGGGTGCGAAGGCAGCGACTGCAACGGCATCCGCAATATGTTCACCCCGGATGTCTGCGATAGTGC
GGAATGGCCGGTGCAGGGGCAGGACCCGTGCATCTGCACCGCCTTGCCGTACAACCCGGTCGACGGGCGCTGCGTCGCCG
CCCAAGCCACCACCATCTCGATCGCCACCAACACCACGGACGGCAAGAACCCACTCTTCCCGGTCACCTTCCCCGTCGTC
GGGTCCTGCGCGCCGGGGGAGTTCTTGACCTCGCTCCCGGCGGGCGTGGCCGGCGTCGCGGGGCTTGCGAGGCTGCTTAA
CTCTCTGCCGTTGCAGGTCGCCCAGTGGTACCGCCTGAAGCAAGAGTTCGCGCTGTGCCTGCCCAGGGCCGGGGACGGCG
TGGCCGTCTTCGGCGGCGGCCCGTTCCAGCTCCTGGCCGCGCCAACCGTGGAGCTCGCCGACAGCCTCCGCAAGAACCCT
CTCCCGTTCCTCTTC-----------AACCCCAAAAACCGCGCCTACTACTTTACCATCACCGGCATCGCCGTGAACCAG
CAGCGCGTGCCCACGCCGTCCGGCGCCTTCGACATGGAA---AGGAGAGGCCAAGGCGGCGCCGCCTTCAGCACCGTCAC
G-----CCCTACACCGCGCTCCGCTGGGACATCTACTGGCCGCTCCGAAACGCGTTCGACGCGGCCACGAGCGGCA-TCG
CGCGCGCGGAGAAGGTGGCGCCGTTCGACATGTGCTACCAGGCGTCGGAGCTCGCAATGACCAGCGTGGGCTATGCCGTG
GCCAACATCGACCTGATGCTGGACGGAGGGCAGAACTGGACACTGCCCGGCGCCAGTTCGCTCGTGCAGGTGAACGACCA
GACGGTGTGCTTCGCGTTCGTTCAGACGGATTCGTCGGTGCCGGCACATGCTGAGTCGCCGGCGGTGATCCTCGGGGGGC
ACCAGTTGGAGAACAACCTGCTGATATTCGACCTGGACAAGGACACGTCCGCGTTCAGTGGGCTGCTCCTCGGCATCGGC
ACTACCTGCAGCAACTTCGACTTCAGCATGGGGAGTTC---TTAGAAGAGTGTCA-------------------------
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>chr3A_1192
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--------------------------------------------------------------CCGCCACCTCCCTCTACA
CCATCGCCATCAAGGACGGAGGAGGGCCGCTCCTCCTCGACCTCGCCGGCCCAATGCTCTGGGTCGCCAACTGCCCCTGC
ACGCACTGGGCCATCGGGTGCGGCGGCAGCCACTGCGACGGCTTCCGCAATATGTTCACCCCGGATGCCTGTGATAGTGC
AGAATGGCCGGCGCAGGGGCAGGACACGTGCATCTGCACCGCCTTGCCGTACAACCCGGTCGACGGGCGCTGCGTCGCCG
CCCAAGCCACCACCATCTCGATCGCTGCCAACACCACGGACGGCAAGAACCCGCTCTCCCCGGTGACCTTCCCCGTCGTC
GGGTCCTGCGCGCCGGGGGATTTCCTGGCCTCGCTCCCGGAGGGCGTGGCCGGCGTCGCCGGGCTCGCGAGGCTGCGTAA
CTCTCTGCCGTTGCAGGTCGCGCAGTGGTACAGCCTGAAGCAAGAGTTCGCGTTGTGCCTGCCCAGGGGCGGGGACGGCG
TGGCCGTCTTCGGCGGCGGCCCGTTCCAGCTCCTGGCCGCGCCGACCGTGGAGCTCGCCGACAGCCTCCGCAAGAAGCCT
CTCCCGTTCCTCTTC-----------AACCCCAAAAACCGCGCCTACTACTTCACCATCACCGGCATCGCCGTGAACCAG
CAGCGCGTGCCCACGCCGCCCGGCGCCTTCGACTTGGAA---AGGAGAGGCCAAGGCGGCGCCGCCTTCAGCACCGTCAC
G-----CCCTACACCGCGCTCCGCTGGGACGTCTACTGGCCGCTCCGCAACGCGTTCGACGCGGCCACCAGCGGCA-TCG
CGCGCGCGGACAAGGTGGCGCCGTTCGACATGTGCTACCAGGCGTCGGAGCTCGCCATGACCAGCGTGGGCTACGCCGTG
GCCAGCATCGACCTGATGCTGGACGGAGGCCAGAACTGGACGCTGCCCGGCGCCAGCTCGCTCGTGCAGGTGAACGACCG
GACGGTGTGCTTCGCGTTCGTTCAGACGGATTCGTCGGTGCCGGCACATGCTGAGTCGCCGGCGGTGATCCTCGGGGGGC
ACCAGTTGGAGAATAACCTGCTGATGTTTGATC-GGACAAGGACACGTTCGCGTTCAGTGGGCTGCTGCTCGGCATCGGC
ACTACCTGCAGCAACTTCGACTTCAGCATCGGGAGTTC---TTAGAAGCAGTAGTGTCA---------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>chr3D_1397
--------------------------------------------------------------------------------
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---------------------------------CTGCACCGCCTTGCCGTACAACCCGGTCGACGGGCGCTGGGTCGCCG
CCCAAGCCACCACTATCTCCATCGCCGCCAACGCCACGGACGGCAAGAACCCGCTCTTCCCGGTCACTTTCCCCGTCGTC
GGGTCCTGCGCGCCCGGGGATTTCCTGGCCTCGCTCCCGGCGGGCGTGGCCGGCGTCGCGGGGCTCGCGAGGTTGCTTAA
CTCTCTGCCGTTGCAGGTCGCCCAGTGGTACCGCCTGAAGCAAGAGTTCGCGCTGTGCCTGCCCAGGGCCGGGGACGGCG
TGGCCGTCTTCGGTGGCGGCCCGTTCCAGCTCCTGGCCGCGCCGACCGTGGAGCTCGCCGACAGCCTCCGCAAGAAGCCT
CTCCCGTTCCTCTCCCGTTCCTCTTTAACCCCAAAAACCGCGCCTACTACTTTACCATCACCGGCATCCCCGTGAACCAG
GAGCGCGTGCCCACGCCGCCCGGCGCCTTCGACATGGAA---AGGAGAGGCCAGGGCGGCGCCGCCTTCAGCACCGTCAC
ACCTGACCCTACACCGCGCTCCGCTGG-ACATCTACTGGCCGCTCCGCAACGCGTTCGACGCGGCCACGAGCGGCTCTCG
CGCGCGCGGACAAGGTGGCGCCGTTCGACATGTGCTACCAGGCGTCGGAGCTCACAATGACCAGCGTGGGCTATGCCGTG
GCCAACATCGACCTGATGCTGGACGGAGGCCAGAACTGGACACTGCCTGGCGCCAGCTCGCTCGTGCAGGTGAACGACCA
GACGGTGTGCTTCGCGTTCGTTCAGACGGATTCGTCGGTGCCGGCACATGCTGAGTCGCCGGCGGTGATCCTCGGGGGGC
ACCAGTTGGAGAACAACCTGCTAATATTCGATCTGGAGAAGGACACGTTCGGGTTCAGTGGGCTGCTCCTCGGCGTCGGC
ACTACCTGCAGCAACTTCGACTTCAGCATGGGGAGTTC---TTAGAAGAGTGTCA-------------------------
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--------------------------------------------------------------------
>SNPs
SS---------S----------------------S---------S----S-----SSSS----S-------S--S-----
-S---------------------------------------------------------------------S--------
-------------------SS---------------------------------------------S-------------
---------S-----S--------------------------S--------------------S----------------
S--------------------------------S-S-SSSSSSSSSSSS-------------------------------
--------------------SS-----------------------------------------------S----------
---SSS-------------------------S--S---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------S--SS---S-------------------------------------
-----------------------------S---------S----------------------------------------
--------------------------------------------------------------------------------
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S---S-----------SSS---------------------S--S------------------------------------
----S-----------------S---------------------------------------------------------
--------------------------------------------------SSSSS-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S-------SS---------------------
-----------------------S--------------------------------------------------------
-------------------------------------------S-----------SSSSSSS--S-----S---------
-S-------------------------------------------S----------------------------------
--------------S--S-----------------------------------S--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S----S----S-------------
--------------------------------------------S-----------------------------------
S--------------------------------------------------S----------------------------
----------------------------------------------------------------S--S------------
-----S-----------------------------------------------------------S--------------
-----------------S--------------------------------------------------------------
--------------S--------------------------------------------------------S--S-----
---------------------S---------------------------------S------------------------
--------------------------------------------------S--------------------------S--
---S-----------------------SS-------------------------------------S-------------
--------------------------------------------------------------------------------
-----S-------------------------------------------------SS---S-----S------SS-----
--S------------S----S-------------------SSSS--------------S-------------------S-
-----------------------S-------S-------S------------------------------S---------
-------S------SSSSSS-SSSSSS----S-------S---------SSSSSS--------S-----S--------S-
---------S-S-------SS-------------SS------------S-S--------S----S-----S----SSS--
S------------S-SS--S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_152
--------------------------------------------------------------------------------
----------------------------------------------------GCCACGGTGAGAAGAGGTTT--------
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--------------------------------------------------------------------
>reverse_2886
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----TCTCCTCAAGCACCCCTACA-------------------------------------------------------
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--------------------------------------------------------------------
>forward_2302
--------------------------------------------------------------------------------
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------------------------------------------CATCAGCAAGGACACCTCCA------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------
>reverse_4274
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------CAACCACATCCCTCCCTCAC---------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------
