>input_sequence_50330
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-------------------------------------------------------------CTCCCCTGTCGCCGGCT--
---------------CGCCGCTCGCCCAGCGACCCCTGCTGCCCCACATCGTCAAAGTGCTGCTAGCCCACAAGATCGCA
GGAACCATGTCGTTCGCCGGCGTATCCGTCATTGCTGGCAGTGGCGGCAGGC---TGCCGCGGCTGTCGGCGGAATCGGA
CATGATCTACTCCGGCTCCAGCGCAGCCAGCAGAGGCAGC------TGCTACTATCACCTGCTTGTGGTGGAAGGTTACT
CCCGCATCAAAGAC---CTGCCCAATGGAGGGACAATCATGGGTCGCACATTCAAAGCTGGAGGCTATCAATGGGTTCTG
AGGTTCCATCCCAATGGTTATGCCCCGGAGGATGTCGGTTCCATCTCGGTTTATCTTGTGCTTGACCAGG---ATGTTGC
ACGGCCCGTGAAGGTGCATCTCCAGTTTAGTTTGGTTGATGAGGTTAGCAAGCAAGATCAAGCATTCATCCGTGCAATCA
AAGCGTGCGACTTCTCTGGCAGTGGCTCTACT------TGGGGCCGCAGTTGTTTCATAAA---AGGAGA-GGACCTTGA
GAAGTCAGATCAT---CTCAAGGATGATTGTTTCACCATCCGGTGTGATTTCATCATCGCCGAAGCTGCTGCT-GCTGCT
CCCTTGGTAAAGGTGCCGTCATCTAACATAAGCGAGCATCTGAGCCATCTCTTAGTGACGGAGGTGGGCGCCGATGTGAC
GTTCGAGGTCGGCCATGAGATGTTCGCCGCCCACCGGTGTGTGCTCGCGTCCCGTTCCGCCGTATTCATGGCACAGCTCT
TTGGCCCCATGAAGGAGGGGACC---ACGGCGGCCGCCATACAAATACAAGACATGGAACCGGACATCTTCAAGGCACTG
CTTGGTTTCATCTACACTGACTTGATGCCAGAGATGGAGGCGGAA-----------------------------------
----------------AG---------A---------GAAGCAGAAGTAGAAGAAGGTGGAGCTGATGAGGTTACGTGGC
TGCGCCACTTGCTTGCCGCGGCGGATAGGTTTGATCTCCAGAGGCTCAAGTCGATGTGTGAAGAGAGGTTGTTGGAGCAC
ATAGATTTGAGCTCGGTGTCGGCCATCCTTGCTGTGGCAGCGCAGCTCCAATGCTGTGGACTTAAGGAGGCGTGCCTGGA
GTTCCTCAAGGTTCAGTCAGCTGCAGACTTGGGACAAGTAATGGCGACCAGTGACTGGGAGCACATAGGTGCAACCGATC
ACTCCGTTCTGAACCAGCTCATTGCCAAGCTTGCTTCCAAAGTTTAGTTCGT-------AACAGTGTCCTCATGGGGCTT
CTGGTACGCATAAGAGGATCAAACATATGTGCGCAAGGCATGGATGGTTTATAGATTCAGTTAAGCAAACATCAATGTTG
ATCTATTGTCATGCATTCCTTTCATGCAGTGTGAATCTGAGTACATACTCCGTACCTTGGCTTCAGCAATCTCCATGTTG
ATTGATAATGCGATCCTGA-AAATGGCCAGGCCTGGTGAAAATGCAACAGTGTGAACGTGTATCTG--------------
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>chr1B_1_TraesCS1B01G428600
GCTGAAAGCAAACCGAGCCTCAGGTGCCGATCTAGCGCTGGCTCGCCCTCAGGCCGTTCTTTTTCGGCGCCTGGGAGGCC
GAACGGCTGGAGACGCTCTTATCAGTCGGCTGAGTGTGAGCGTTCTTC-AAAAATAAATGCGCGGCGGCCGAATTTCGCG
TAAAAGCCCTAACAATTGGGCCAGCA----GGACTTTTTTCAGCCCACCGCGCAGAATATTCATGGGCCGCTCCGCCAGT
T------TGTAACCTAGCTCTCTC--CTGCTCTGCTCGCCAC-------TCTCGCACCGCCGCCGTCTCCAACGCCAAAT
CCCTCGCCTCCTTCCACGTCTCGCCGCCGCGTCGCCGTCGATCACTTCCCAGCGCCGCCTCGCCGCAGAGCACTTCCCAG
CGCCGCCTCGCCGCAGATCACTGCCCTGCACAGCTCTCCCCTGCGCCGCCTCGCCGCAGATCACTGCCCTGCACAGCTCT
CCCCTGCGCCGCCTCGCCGTCGACCACTCCCCTTGCGCCGCCTCGCCGTCGACCACTCCCCTTGCGCCGCCTCGCCGTCG
ACCACTCCCCTTGCGCCGCCTCGCCGTCGACCACTCCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCGCTGACTGGCCTGCCGAA
A-CCCTCCCTCGTGCGGCCGTTCCCCCAAGCCGCCTCTTCCCCCGCCCATTCAACGCCACCCTCCCCTGTCGCCGGCT--
---------------CGCCGCTCGCCCAGCGACCCCTGCTGCCCCACATCGTCAAAGTGCTGCTAGCCCACAAGATCGCA
GGAACCATGTCGTTCGCCGGCGTATCCGTCATTGCTGGCAGTGGCGGCAGGC---TGCCGCGGCTGTCGGCGGAATCGGA
CATGATCTACTCCGGCTCCAGCGCAGCCAGCAGAGGCAGC------TGCTACTATCACCTGCTTGTGGTGGAAGGTTACT
CCCGCATCAAAGAC---CTGCCCAATGGAGGGACAATCATGGGTCGCACATTCAAAGCTGGAGGCTATCAATGGGTTCTG
AGGTTCCATCCCAATGGTTATGCCCCGGAGGATGTCGGTTCCATCTCGGTTTATCTTGTGCTTGACCAGG---ATGTTGC
ACGGCCCGTGAAGGTGCATCTCCAGTTTAGTTTGGTTGATGAGGTTAGCAAGCAAGATCAAGCATTCATCCGTGCAATCA
AAGCGTGCGACTTCTCTGGCAGTGGCTCTACT------TGGGGCCGCAGTTGTTTCATAAA---AGGAGA-GGACCTTGA
GAAGTCAGATCAT---CTCAAGGATGATTGTTTCACCATCCGGTGTGATTTCATCATCGCCGAAGCTGCTGCT-GCTGCT
CCCTTGGTAAAGGTGCCGTCATCTAACATAAGCGAGCATCTGAGCCATCTCTTAGTGACGGAGGTGGGCGCCGATGTGAC
GTTCGAGGTCGGCCATGAGATGTTCGCCGCCCACCGGTGTGTGCTCGCGTCCCGTTCCGCCGTATTCATGGCACAGCTCT
TTGGCCCCATGAAGGAGGGGACC---ACGGCGGCCGCCATACAAATACAAGACATGGAACCGGACATCTTCAAGGCACTG
CTTGGTTTCATCTACACTGACTTGATGCCAGAGATGGAGGCGGAA-----------------------------------
----------------AG---------A---------GAAGCAGAAGTAGAAGAAGGTGGAGCTGATGAGGTTACGTGGC
TGCGCCACTTGCTTGCCGCGGCGGATAGGTTTGATCTCCAGAGGCTCAAGTCGATGTGTGAAGAGAGGTTGTTGGAGCAC
ATAGATTTGAGCTCGGTGTCGGCCATCCTTGCTGTGGCAGCGCAGCTCCAATGCTGTGGACTTAAGGAGGCGTGCCTGGA
GTTCCTCAAGGTTCAGTCAGCTGCAGACTTGGGACAAGTAATGGCGACCAGTGACTGGGAGCACATAGGTGCAACCGATC
ACTCCGTTCTGAACCAGCTCATTGCCAAGCTTGCTTCCAAAGTTTAGTTCGT-------AACAGTGTCCTCATGGGGCTT
CTGGTACGCATAAGAGGATCAAACATATGTGCGCAAGGCATGGATGGTTTATAGATTCAGTTAAGCAAACATCAATGTTG
ATCTATTGTCATGCATTCCTTTCATGCAGTGTGAATCTGAGTACATACTCCGTACCTTGGCTTCAGCAATCTCCATGTTG
ATTGATAATGCGATCCTGA-AAATGGCCAGGCCTGGTGAAAATGCAACAGTGTGAACGTGTATCTGTCTATCTAGCTATG
TGATCCTGAAAGCTGTCCAATCTTCAGCTTGAATTAACGAATCGGAGGGAACTGTACAGATCGTCGGTGCCATTCCTCCA
AGCTCCCTCCCGTCGGCATACTATTGTTATGGCATGACGGCCACCCCCTTG-GGTCGTTGGTGGGGTATGACGGCTTCTC
CATTGTCGTTGAACATGTTGATTGCTTGTTGGTGGCCGCCTCTTGCCGCACGAGTGGTTCCACCTGTCCTGCAGGAGGTA
GATGAGCACCATGGTGGAGACCTTGGAGATGAGGAGCACCGTCTAGAACCTGATTCTCCTGCGGGTCCTCTCCCGGG-TG
TGTGGAGGTCGATGTAGACGGCGGCCACTCCCACCACACACACCACCACTCCCATCAGCCAGTGCGTCAGGTACCACACG
CTCTGCGCCTTTACGCCCATGGATATATATGCCAACAAACATCAGAGGAACACAAATTCTGATAGAAACATCAAACTTGT
TAATCTTGTTCGTGTATTTGCTTGTGTACTACATGCAGGGTTTATCTCATGTAGTTGCATTTTA-ACGACCTTTATATCT
CCACAATATTCCTAAAATCAATGAAGAAAATGTTAGTTGCCTATTCACTCCCCTCGACTCACCCCCTTGGTCGACATCAA
TGATCTTTCACATCCATCGGTTGTCACATCCTCCTAGTCTTAGCAATTAGATCTAGCTTGTTAGTTTTGGGACTATAAAA
AGAGCAAAAAAATTGTCACGACATCGTAACTAATGGGTAAAGTATGGGAAAAAATAATACTATAAAAGCTATCACAAGAT
GACAACTGTGAGGTATAAAAAGAAGTATAATTTATATACTTTTACTTTCTTTTGCTCATGTTAGTTATTTTGAAATGCAC
TTTCCTTTATTGTTCACATTGTTTTGGTTCATTATGTCACTAGAATAAATTGTTAAACCATTTTTTTCTA-----ATGTT
GTTATTATTTTCTATGACAATGGACTCGAGCCAC
>chr1D_99
--------------------------------------------------------------------------------
------------------TTATCAGTCGGTTGAGTGTGAGCGTTCTTCAAAAAATAAATGGGCGGCGGCCATATTTCGCG
TAAAAGCCCTAACAATTGGGCCAGCCAGCGGGACC-TTTTCAGCCCACCGCGCGGAATTTTCATGGGCCGCTTCCCCCGT
T------TCTAACCTAGCTCTCTCTCCTGCTTTGCTGGCCAGTCGCCATTCTCGCACCGCCGCCGTCCCCAACGCCAAAT
CCCTCGCCTCGC---------CGCCGCCGCCCT----------------CAGCGCCGCCTCGCCGCCGACCACTTCCCAG
AGCCGCCTCGCCGCAGATCACTG---------------------------------------------------------
-CCCTGCGCCGCCTCGCCGTCGACCACTCCCTGC----------------------------------------------
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----------------------------------------------------------------------GCCTGCCGAA
ACCCCTCCCCCGTGCGGCCGTTCCCCCAAGCCGCCTCTCCCT--------------CCGCCCTCCCCTGTCGCCGGCT--
---------------CGACGCTCGGCCAGCGACCCCTGCTGCTCCACATCGTCAAAGC---GCTAGCCCACAAGATCGCA
GGAACCATGTCGTTCGCCGGCGTATCCGTCGTCGCCGGCGGTGGCGGCAGGC---TGCCGCGGCCGTCCGCGGAGTCGGA
CACGATCTACTCCGGCTCCAGCGCGGCCAGCAGAGGCAGC------TCCTACTATCACCTGCTTGTGGTGGAAGGTTACT
CCCGCATCAAGGAC---CTGCCCAATGGAGGCACAATCATGGGCCGCACTTTCAAAGCTGGAGGCTATCGATGGGTTCTG
AGGTTCCATCCCAATGGTTATTCCCCGGAGGATGTCGGTTTCATCTCTGTTTATCTCGTGCTTGACCAGG---ATGTTGC
ACGGCCTTTGAAGGTGCATCTCCAGTTTAGTTTGGTTGATGAGGTTAGCAAGCAAGATCAGGCATTCATCCGTGCAATCA
AAGCATGCGACTTCTCTGGCAGTGGCTCTACT------TGGGGCCGCAGTTGTTTCATAAA---AGGCGA-GGACCTTGA
GAATTCGGAGCAT---CTCAAGGATGATTGTTTCACCATCCGGTGCGATTTCATCATCGCCCAAGCTGCTGCT-GCTGCT
CCCTTGGTAAAGGTGCCGTCATCTAACATAAGCGAGCATCTGAGCCATCTCTTAATGACCAAGGTGGGCGCCGATGTGAC
GTTCGAGGTCGGCCATGAGACGTTCGCCGCCCACCGGTGTGTGCTCGCGTCCCGTTCCGCTGTATTCATGGCACAGCTCT
TTGGCCCCATGAAGGAGGGGACC---ACGGCGGCCGCCATACGAATACAAGACATGGAACCGGACATCTTCAAGGCACTG
CTTGGTTTCATCTACACTGACTTGATGCCGGAGATGGAGGCGGAA-----------------------------------
----------------AG---------A---------GAAGCAGAAGTAGAAGAAGGTGGAGCTGAGGAGGTTACATGGC
TGCGTCACTTGCTTGCCGCGGCGGATAGGTTTGATCTCCAGAGGCTCAAGTCGATGTGTGAAGAGAGGTTGCTGGAGCAC
ATAGATTTGAGCTCGGTGTCGGCCATCCTTGCGGTGGCAGCGCAGCTCCAATGCTGTGGACTCAAGGAGGCGTGCCTGGA
GTTCCTCAAAGTTCAGTCAGCTGCAGACTTGGGACAAGTCATGGCGACCAGCGACTGGGAGCACATAGGTGCAACCGATC
ATTCCGTTCTGAACCAGCTCATCGCCAAGCTTGCTTCCAAAGTTTAGTTTGTCTGCTGTAACAGTGTCCTCATGGGGTTT
CTGGTATGCATAAGAGGATCAAACATATGTGCGCATGGCATGGATGGTTTATAGATTCAGTTAAGCAAACATCAATGTTG
ATCTATTGTCATGCATTCCTTTCATGCAGTGTGAATCTGAGTACATACTCCGTACCTTGGCTTAAGCAATCTCCTTGTTG
ATCGATCATGCGATCCTGAAAAATGGCCAGGCCTGGTGAAAATGAAACAGTGTGAACGTGTTTCTGTCTATCTAGCTATG
TGATCCTGAAAGCTGTCCAATCTTCAGCTTGAATTAACGAATCGGAGGGAACTGTACAGATCGTCGGTGCCATTCCTCCA
AGCTCCCTCCCGTCGGCATACTATTGTTATGGCATGACGGCCACCCCCTTGTGGTCGTTGGTGGGGTACGACGGCTTCTC
CATTGTCGTTGAACATGTTGATTGCTTGTTGGTGGCCGCCTCTTGCCGCACGAGTGGTTCCACCTGTCCTGCAGGAGGTA
GATGAGCACCATGTTGGAGATCTTGGAGGTGAGGAGCACCGTCTAGAACCTGATTCTCCTGCGGGTCCTCTCCCTGTATG
TGTGGAGGTCGATGTAGACGGTGGCTACTCCCACCACACACACCACTACTCCCATCAGCCAGTGCGTCAGGTACCACATG
CTCTGCGCCTTTACGCCCATGGATATATATGCCAACAAACATCAGAGGAACACAAATTCTGATAGAAACATCAAACTTGT
TAATCTTGTTCGTGTATTTGCTTGTGTACTACATGCAGGGTTTATCTCATGTAGTTGCATTTTACACGACCTTCATATCT
CCACAATATTCCTAAAATCAATGAAAAAAATGTTAGTCGCCTATTCACTCCCCTCGACTCACCCCCTTGGTCGACATCAA
TGATCTTTCACATCCATCGGTTGTCACATCCTCCTAGTCCTAGCAATTACATCTAGCTTGTTAGTTTTGGGACTATAAAA
AGAGCAAAAA-ATTGTCACGACATCGTAACTAAGGGGTAAAGTATGGGAAAAAGTAATACTATAAAAGCTATCACAAGAT
GACAACTGTGAGGTACAAAAAGAAGTAGAATTTACATACTTTTACTTTCTTTTGCTCATGTTTGTTATTTTGAAATGCAC
TTTCCTTTATTG--CACATTGTTTTGGTTCATTATGTCACTAGAATAAATTGTTAAACCATTTTTTTCTTCTATTATGTT
GTTATTATTTTTTATGACAATGGACTCGAGCC--
>chr1A_128
--------------------------------------------------------------------------------
-----------------------------------------------C-AAAAATAAATGGACGGCGGCCATATTTCGCG
TAAAAGCCCTAACAATTGGTCCAGCA----GGACT-TTTTCAGCCCATGGCGCAGAATTTTCATGGGCCTCTCCGCCAGT
GTCTAAGTCTAACCTAG--CTCTC--CTGCTCTGCTCGCCAC-------TCTCGCACCGCCGCCGTCCCCAACGCCAAAT
CCCTCGCCTCCTTCCCCGCCTCGCCGCCGCCCT----------------TAGCGCCGCCTCGCCGTCGACCACTA-----
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-CCCTGCGCCGCTCTCCCC-------------------------------------------------------------
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-----------------------------------------------------------AGCGCTGACTGGCCTGCCGAA
ACCCCTCCCCCGTGCGGCTGTTCCCCCAAGCCGCCTCTCCCT--------------CCGCCGATCTCCCCCCGCCCATTC
AACGCCACCCTCCCCCGCCGCTCGCCCAGCGACCCCTGCTGCTCCACATCATCAAAG---TGCCAGCCCACAAGATCGCA
GGAATCATGTCGTTCGCTGGCGTATCCGTCGTTGCCGGCGGTGGCGGCCGCGGCA------GGCCGTCCGCGGAGTCGGA
CATGATCTACTCCGGCTCCATCGCGGCCAGCAGAGGCAGC------TGCTACTATCACCTGCTTGTGGTGGAAGGCTACT
CCCGCATCAAGGAC---CTGCCCAATGGAGGCACAATCATGGGCCGCACTTTCAAAGCTGGGGGCTATCGATGGGTTCTG
AGGTTCCATCCCAATGGTTATTCCCCGGAGGACGTCGGTTCCATCTCGGTTTATCTTGTGCTTGACCAGG---ATGTTGC
GCGGCCCGTGAAGGTGCATCTCCAGTTTAGCTTGGTTGATGAGATTGGCAAGCAAGATCAAGCATTCATCCGTGCAATCA
AAGCATGCGACTTCTCTGGCAGCGGCTCTACT------TGGGGCCACAGTTGTTTCATAAA---AGGCGA-GGACCTTGA
GAACTCAGAGCAT---CTCAAGGATGATTGTTTCACCATCCGGTGCGATTTCATCATAGCTGAAGATGATGCT-GCTGCT
CCCTTGGTAAAGGTGCCGTCATCTAACA--AGCGAGCATCTGAGCCATCTGTTATTGACCAAGGTTGGCGCCGATGTGAC
GTTCCAGGTCGGCCATGAGACGTTCGCCGCCCACCAGTGTGTGCTCGCGTCCCGTTCCGCCGTATTCATGGCACAGCTCT
TTGGCCCCATGAGGGAGGGGACC---ACGGCAGCCGCCATACAAATACAAGACATGGAACCGGACATCTTCAAGGCACTG
CTTGGTTTCGTCTACACCGACTTGATGCCAGAGATGGAGGCGGAA-----------------------------------
----------------AG---------A---------GAAGCAGAAGTAGAAGAAGGTGGAGCTGACGAGGTGACGTGGC
TGCGTCACTTGCTTGCCGCGGCGGATAGGTTTGATCTCCAGAGGCTCAAGTCGATGTGTGAAGAGAGGTTGTTGGAGCAC
ATAGATTTGAGCTCGGTGTCGGCCATCCTTGCCGTGGCAGCGCAGCTCCAATGCTGTGGACTCAGGGAGGCGTGCCTGGA
GTTCCTCAAAGTTCAGTCAGCTGCAGACTTGGGAGAAGTCATGGCGACCAGCGATTGGGAGCACATAGGTGCAACCGATC
ACTCCGTTCTGAACCAGCTCATCGCCAAGCTTGCTTCCAAAGTTTAGTTCGTCTGCTGTAACAGTGTCCTCATGTGGCTT
CTGGTACGCATAAGAGGATCAAACATATGTGGGCAAGGCATGGATGGTTTATAGATTCAGTTAAGCAAACATCAATGTTG
ATCTATTGTCATGCATTCCTTTCATGCAGTGTGAATCTGAGTACATACTCCGTACCTTGGCTTCAGCAATCTCCATGTTG
ATCGATCATGCGATCCTGAA-AATGGCCAGGCCTGGTGAAAATGCAACAGTGTGAACGTGTATCTGTCTATCTAGCTATG
TGATCCTGAAAGCTGTCCAATATTCAGCTTGAATTAACGAATCGGAGGGAACTGTACAGATCGCCGGTGCCATTCCTCCA
AGCTCCCTCCCGTCGGCATACTATTGTTATGGCATGACGGCCACCCCCTTGTGGTCGTTGGTGGGGTACGATGGCTTCTC
CATTGTCGTTGAACATGTTGATTGCTTGTTGGTGGACGACTCTTGCCGCATGAGTGGTTCCACCTGTCCTGCAGGACGTA
GATGAGCACCATGGTGGAGACCTTGGAGGTGAGGAGCACCGTCTAGAACCTGATTCTCCTGCGGGTCCTCTTCTGGTATG
TGTGGAGGTCGATGTAGACGGTGGCCACTCCCACCACACACACCACCACTCCCATCAGCCAGTGCGTCAGGTACCACATG
CTCTGCGCCTTTACGCCCATGGATATATATGCCAACAAACATCAGAGGAACACAAATTCTGATAGAAACATCAAACTTGT
TAATCTTGTTCGTGTATTTGCTTGTGTACTACATGCAGGGTTTATCTCATGTAGTTGCATTTTACACGACCTTTATATCT
CCACAATATTCCTAAAATCAGTGAAAAAACTGTTAGTCGCCTATTCACTCCCCTCGACTCACCCCCTTGGTCGACATCAA
TGATCTTTCACATCCATCGGTTGTCACATCCTCCTAGTCCTAGCAATTAGATCTAGCTTGTTAGTTTTGGGACTATAAAA
AGAGCAAAAAC-TTGTCACGACATCGTAACTAAGGGGTAAAGTATGGGGAAAAATAATACTATAAAAGCTATCACAAGAT
GACAACTGTGAGGTACAAAAAGAAGTAGAATTTACATACTTTTACTTTCTTTTGCTCATGTTTGTTATTTTGAAATGCAC
TTTCCTTTATTGTTCACATTGTTTTGGTTCATTATGTCACTAGAATAAATTGTTAAACCATTTTTTTCTTCTATTATGTT
---ATTATTTTCTATGACAATGAACTCGAGCC--
>chr1B_920
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-----------------------------------------------------------AGCGCTGACTGGCCTACCGAA
ATCCCTCCCCCGTGCGGCCGTTTCCCCAA-CCGCCTCTCCCT--------------CCGCCAGTCTGCCCCCGCCT----
---------CTCCCTGCCGGCTCACCAATCTACCCCTGCTGCTCCACATCGG------------------CAAGATCGCA
GGAATCATGTCGTTCGCCGGCGTATCCGTAGTTTCTGCCGGCAGCAT------------------GCCGCAGGGGTCGGC
CATGATCTACTCCGGCTCCAGCGCAGCCAGCAGAGACAGT------TGG---TATCACCTCCTTGTGGTGGAAGGTTACT
CCCGCTTCAAAGAC---ACGCCCACCGGAGTGCTCATCAAGGGCTGCTCTTTCCAAGCTGGAGGCCATCGATGGGCTATG
AAACTCTACCCCAATGGCTGTGTCCCAGATGATGCCGGTTTCGTGTCCGTTTATCTTTTCCTTGACCAGGCGGATGTTGC
ACGGCATGTGATGCTGCACCTCCAGTTTAGTTTGATTGATGAGGCTGACAAGCAAGAGCACGCACGCATCCGCGCAATCA
AACCATGTGCCTTCTCCGGCACTGGCCCTACTCGCATTTGGGGTCGTCGTCGTTTCATAAA---ATAGGA-GGACCTTGA
GAAGTCAGGGCAT---GTCAAGGATGATTGTTTCACCATCCGGTGTGATTCCATCACCGCTGAA---GCTGCT-GATGCT
CCCTTGATCGAGGTGCCGTCATCTAACATAAGCGAGCATCTGAGCCATCTCTTAATGACCAAGGTGGGTGCCGATGTGAT
GTTCGAGGTCGGCCCTGAGACGTTTGTTGCGCACCGTTGTGTGCTCGCGTCCCATTCCCCTGTCTTTATGGCTCAACTCT
TTGGCCCCATGAAGGAGGGGACC---ATGGCTAGTGCCGTACAGATACAAGACATGGAACAGAACGTGTTCAAGGCCT-G
CTCAGTTTTGTCTACACCGACTTGATGCCCGAGATGGAGGCGGAA-----------------------------------
----------------GG---------A---------GCC------------------------GATGTGGTTACGTGGC
TGCGACACTTGCTTGCCGCGGCCGATAGGTTTGATCTCCAGCGGCTCAAGTCCATGTGTGAAGAGAGGCTGTCGAAGCAC
ATAGATTTGAGCTGGGTGACGGCCACCCTTGGTCTGGCAGCGCAGCACCATTGCCATGGACTCAAGGAGGCCTGCCTAGA
GTTTCTCAAAGTCCAATCCCCTGAAGACTTGCGAGGAGTCATGGCGACCAGCGACTGGGAGCACATAGCTGCAACCGATC
ACTCCGTTCTGAATGAGCTCATCGGCAAGCTTGCTTCCAAAGTTTAGTTCGTCTGCTGTAACAGTGTCCTCGTGTGGCTT
CTGCTACGCATG-GAGGATCAAACATATGTGTGCATGACA--GATGGTTTATGGATTTAGTTA-----------------
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>chr1B_1064
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-------------------------------------------------------------GCTAGCCCACAAGATCGCT
GAAATCATGTCGTTTGCTGGTGTATCCGTCGTTGCAGACGG------CAAGC---TGCTGCAGCCGTCCACGGCATCGGC
CATT---TACTCCGGCACGGAC---------AGCAGTGGCAGTTGGTGG---TATCACCTGCTTGTGGTACAAGGTTACT
CCCGCACCAAAAACCTGCTGCCCAATGGAGAGAGAATCAAGGGTTGCTCCTTCCGAGCTGGAGGATATCAATGGGCTCTG
GAACTCTATCCCAACGGTGATGTCATGGATGCTGCCGGCTTCATGTCCATTTTTTTCATCCTTGATCAGG---ATGTTGC
ACGGCCTGTGAAGGTGCAGCGCCAGTTTAGCTTAATTGATGAGGTTGACAAGCAGCAACCTGCACACATCCGTGCAAGGA
AAGCACGTGACTTCTGTGCACACAACGATGGC------TGGGGTCGAAGTCAATTCATAAA---ACAGGA-GGACCTTGA
GAAGTCAGAGCAT---CTCAAGGATGATTGTTTCACCATCCGGTGCGACTTTATCATCGCCGAAGCCGTCTCA----GCT
ACCTTCATTGAGGTGCCGCCATCTAACTTATGCGAGCATCTGAACCATCTCTTTGCGACCAAGGTTGGCGCCGATGTGAT
GTTTGAGGTAGGCCATGAGAGTTTTGCTGCTCACCGAAACATTCTCGCGGCTCGTTCCACCGTCTTCATGGCGGAGCTCT
TCGGCCCCATGAAGGAGGGGACC---ACGGCGGGTGCCATACAGATACAAGACATGGAACCCAACGTATTCAACGCCTTG
CTTGGTTTCATCTACACCGATTTGATGCCCAAGATGACAACGGTGTTTTATCAAAAAAAGATGACAAAGGTGGGAGGAGA
AGCAGAAGCAGAAGGTGG---------A---------GCC------------------------GATGAGGTTACGTGGC
TGCAACACTTGCTTATCGCAGCGGATAGGTTTGATCTCCAGCGGCTCAAGTCGATGTGTGAAGAGAGGCTGTCGGAGTAC
ATAGATTTGAGCTCGGTGACGTCCATCCTTGGTCTGGCAGCACACCACCATTGCCGCGGACTCAAGGAGGCCTGCCTGGA
GTTCCTCAAAGTCCAATCTGCTGCAATCTTGGCAGGAGTCATGGCGACCAGCGACTGGCAGCACATATCTGCCACTGACC
CATCCGTTCTGAATGAGCTCATCACCAAGCTTGCCTCGAAAGCGTAGTTC------------------------------
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>chr1B_1070
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-------------------------------------------------------------------CCACAAGATCGCA
GGAATCATGCCGTTCGCTGGCGTATCCGTCGTTGCCGACGG------CCGACTGGTGCACCCATCGTCCCCGGAGTCGGC
AATGTTTTACCCTGGCTCCAGCGCAGCCAGCAGAGGCAGC------TGG---TATCACCTGCTTGTGGTTGAAGGTTACT
CCCGCATCAAAGAC---CTTCCCAATGGAAAGAGAATCAAGACCGGCTCTTTCAAAGCTGGAGGCTATCAATGGGCTCTG
AAGTTTTACCCCAATGGTGACCTCCTGGAGGATGCTGGTTACATTTCTGTTTTTCTTTCCCTTGATCAGG---ATGTTGC
ACAACCTGTGAAGGCGCACCATCACTTTAGTTTCATTGGTGAGGTTGGCAAACAAGAACCTGCACGCGTCCGTGGAATCA
AAGCATCTTCTTTCCATAAAAAAGGCTATGGT------TTTGGTCTCCACCGTTTCATGAA---AAGAGA-GGCCCTTGA
GAAGTCAGAGCAT---CTCAAGGACGATTGTTTCACCATCCGGTGTGACTTCATCATTGCCGAAG---CTGCT-GCTGCT
CCCTTGATCGAGGTGCCCCCACCTAATTTAAGTGAGCATCTGAACCATCTCTTTGTTACGAAGGTGGGCGTCGACGTGAC
CTTCGAGGTCGGCCACGAGACATTCGCAGCGCACCGTTGTGTGCTCGCGTCCCGTTCCGCCGTCTTCATGGCAGAGCTCT
TCGGACCCATGAAGGAGGGGATTGCTATAGACGATGCCATACAGATACAAGACATGGAACCGAATGTCTTCAAGGCCTTG
CTTAATTTCGTCTACACCGACTTGATGCCAGAGATGGAGGTGGAG-----------------------------------
----------------GG---------ACAGGCAGGGGAAGCCGTCTC------------------TAAGGTTACATGGC
TGCGACACTTGCTTGCCGCCGCGGATAGGTTTGATCTCCAGCGGCTCAAGTCAATGTGTGAAGAGAGGCTGTCGGAGCAC
ATAAATTTGGGCTCGGTGACCGCCATCCTTGGTCTGGCAGCGCAGCACCATTGCCGTGGACTTAAGGAGGCCTGCCTGGA
GTTCCTCAAAGTCCAATCTGCTGCAATCTTGGAAGGTGTCATGGCGACCAGTGACTGGCAGCGCATATCTGCAACTGACC
CGTCTGTTCTGAACGAGCTCATCGCCAAGCTTGCCTCCAAAGCGTAGTTCGT----------------------------
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>chr1D_1078
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---------------------------------------------------------------------------TCGCA
GGAATCATGCCGTTCGCCGGCGTATCTGTCGTTGCCGACGG------CCGACTGGTGCAGCCATCGTCCGCGGAGTCGGC
CATGGTCTACTACGGCTCCAGCGCAGCCAGCAGAGGCAGC------TGCTACTATCACCTGCTTGTGGTGGAAGGTTACT
CCCGCATCAAAGAC---CTGCCCAATGGAGAGGGAATCAAGGGTAGCTCTTTCCAAGCTGGAGGCTATCAATGGGCTTTG
AGGTTCCATCCCAATGGTAGCCGATCCGAGAATGTCGGTTTCATCTGTGTTTATCTTGTCCTTGACCAGG---ATGTGGC
ACGGCCTGTGAAGCTGCACCTCCAGTTTAGTTTCATTCATGAGGTTGATAAGCAAGAGATTGCATCCATCCGTGCAATCA
AAACATGTGACTTCTCTAGAAGTGGCTCTGCT------TGGGGTCGTCCTAGTTTCATAAA---AGGAGAGGGACCTTCA
CAAGTCAAAGCATCTTCTCAAGGACGATTGTTTCACCATCCGGTGTGATTTCATCATTGCCGAAGCTGCTGCT-GCTGCT
CCCTTGATCGAGGTGCCACCATCTAGCATTAGTGAGCATCTGAACCATCTCTTTGTGACCAAGGTGGGCGCCGACGTGAC
GTTCGAGGTCGGCCATGAGACATTCGCCGCGCACCGTTGTCTGCTCGCGTCCCGTTCCCCTGTCTTCATGGCAGAGCTCT
TCGGGCCCATGAAGGAGGGGGTTGCTACAGCCGGTGCCATTCAGATACAAGACATGGAACCGAATGTGTTCAAGGCCTTG
CTCAGTTTC-----------------------------------------------------------------------
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>chr1B_1083
--------------------------------------------------------------------------------
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GGAATCATGTCGTTCGCTGGCGTATCCGTCGTCGCTGGCGG------CAAGC---TGCTGCAGCCGTCCGCGGAGTCGGC
CATGACCTACTCTGGCACCGCC---------AGCCATAGT------TGG---TACCACTTGCTTTTGGTCGAAGGTTACT
CCCGTGTCAAAGCC---ATGCTCAACGGAGCGAACATCAAGGGTCGCTCCTTCAAAGCCGGAGGGTATCAATGGGCTCTC
AAGTTCTATCCCAATGGTGGTGGCTCGGAGAATGCCGGTTTCATGTCGC-TTTTCTTTCCCTTGACCAGG---ATGTTGC
ACAACCTGTGATGGTGCGTGTCCAGTTCAGTTTCATTGATGAGGTTGACGAGCAAGACCCTGCACAAATCTATGCAATAG
AAACAGTTGAGTTCTCTAACGGTGAACCTACA------TGGGGACGCCGTCGTCTCATAAA---AAGAGA-GGACTTTGA
TCAGTCGAAGCAT---CTCAAGGATGATTGTTTCACCATCCGGCGCGACTTCATCATCACCAAAG---CAGCTAGCTGCT
ACGTTCATCAAGGTGCCGCCATCTAACATAAGTGAGAATCTGAACCATCTCCTTGCGTCTAAGGTTGGCACCGACGTGAC
ATTTGAGGTCGGCTGCGAGACATTCACCGCACACCGGTGTGTGCTCGCGGCCCGTTCAGCTGTATTCATGGCGCAGCTCT
TTGGTCCCATGGAGGAGGGGATGACG--AGCCAATGCCATACGCATAGAGGACATGGAACCAAAGGTGTTCAGGACCTTG
CTTGGTTTCATCTACACCGACTCATTGCCTAAGATGAAGGTGGAA-----------------------------------
----------------GGGGAAGCACAA---------GAAGGCGGAGC------------------TGAGGTTCTGTGGC
TGCAACACCTACTTGCCGCAGCGGATAGGTATGATCTTCAGCGGCTCAAGTCAATTTGTGAGGAGAGACTGTCGGAGCGC
ATAAATGTGAGCTCCGTGACGGCCATCCTCGGCCTAGCTGCACAACACCATTGCCACGGATTGAAGGAGGCCTGCCTGGA
GTTTCTCAA-----------------------------------------------------------------------
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>chr1A_1083
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GGAACCATGTCGTTCGCTGGTGTACC-GTCGTTGCGGGAGG------CAAGC---TGCTGCAGCCGTCCGCGGAGTCGGC
CGTGATCTACTCCGGCACGGCT---------AGCGGCAGT------TGG---TATCACCTGCTCGTGGTCCAAGGTTACT
TCCACGTCAAAGGC---ATGCCAAACAAAGTGCACATCAAGGGTTGCTCTTTCAGAGCTGGTGGCTACCAATGGGCTTTG
CAGTTCTACCCCAATGGTAATCGTTCGATCAATGCTGGTTTCTTGTCTGTTTTTCTTTTCCTTGACCAGG---ATGTTGA
ACAGACGGTGAAGGTGCATGTACAGTTTAGTTTCATTGATGAGGTTGCAAAACAAGAGCCCGCACAAATCCATGCAAGGG
AAAAGGTTGGCTTCTTTAGCCGTGACCGTTCA------TGGGGACGCCGTCGTCTCATAAGAGGAGGAGA-GGACCTTGA
GAAGTCAGGGCAT---CTCAAGGATGATTGTTTCACCATCCGGTGCGACTTCCTCATCGTCGAAGC-------AGCTGCT
ACCTTCATCAAGGTGCCACCATCTAACATATGTCAGCATCTAAACCATCTCTTCACGACGAAGGTCGGCACCGATGTGAC
GTTCGAGGTTGGCAATGAGACATTCGCTGCTCACCGGTGCGTGCTTGCGGCCCGCTCCATGGTATTCATGGCGGAGCTCT
TCGGCCCCATGAAGGAAGGCACC---ACGATTGGAGCCATACATGTTGATGATATGGAGCCAGACGTGTTCAAGGCCTTG
CTTGATTTCATCTACATGGACTCAATGCCCAAGATGGAAGGAGAA-----------------------------------
----------------GC---------A---------G------------AAGAAGACGGAGCAGAGGTTCTTATGTGGC
TGAGGCACCTTCTTGCCGCAGCGGATAGGTACCATCTCCA----------------------------------------
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>chr1B_1287
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--------------------------------------------------------GCTGGCGGTTATCAATGGGCTATA
GGTTTGTATGCCAGTGGTTATCCCAAGAGTGTGGCTGGCTTCATATCCGTTTTCCTTCTTCTTAAACAGG---AAGTTGC
ACAGCCTGTGAAAGCGCACGTGCAGTTTAGTTTCGTTGATGAGGTCGACCAGCAAGAGCACGCACGCATCCGTGCACAGA
CATCAGTTGGGTTTACTCGGTGTGGCCAAGCC------TGGGGTCCCAATCGTTTCATAAA---AAAATA-GGAGCTTGA
GTAGTCAAAGCAT---CTCAAGGATGACTCTTTCACCATCCGATGCGATTTTATCATCCCTGGAC---CTGCT-GCTGCT
GCCTTCATCAAGGTGCGGCCAACTAACATATGCGAGCATCTAAACCAACCCTTTGCGACAAAGGTTGGCGCCGACGTGAC
ATTCGAGGTTGGCCATGAGACGTTCGCCGCTCACCGATGCGTGCTTGCGGCATGTTACACCGTCTTCATGGCGGAGCTCT
TTGGCCCCATGCAGGAGGGGACC---ACATCCGGTGCCATACACATACAAGACATGGAGCCAGGCGTGTTCAAGGCGCTG
CTTGGTTTTGTCTACACCGACTCAATGCCCAAGATGGAGGTGGAA-----------------------------------
----------------GG---------A---------GAAGCCGGAGC------------------TGAGATTACGTGGC
TGTGGGACTTGCTTGCCGCGGCGGACAGGTACGATCTTCAGCGGCTCTAGTCGATGTGTGAAGAGAGGTTGTTGGAGCGC
ATAGTTGCGAGCTCGGTGACTGCCATCCTTGCCCTAGCTGCGCAGCATCACTGCTCCGACCTGAAGGAGGCCTGCCTGGA
GTTCCTCAAGGTTCAATCCGCTGCGGACTTGCAACAAGTCATGGCGACCAGTGACTGGGAGCGCATAGCTGCAACCAATC
TCTCTGTTCTGAATGAGCTCATCACCAAGTTTGCTTCAAGAGTGTAGTTCGT----------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS-----------S------------------------------S---------SS--------
-----------------------------------S----------------------S---------------------
--------S----------------------------------------------------------S------------
---------------S--S-----------SSSSSSSSSSSSSSSSSSS-----------------S--S----------
S----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
---------S----------------------------S--SSSSSSSSSSSSSSS--S---------------------
------------------------------------------S--------------SSS--------------------
------------------------------S--------S------------------------S---------------
--------------------------------------------------------------------------------
-------------------------------------------------S------------------------------
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---------S----------------------------------------------------------------------
------------------------------------------------------------S-------------------
--------------------S-----------------------------------------------------------
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----S---------------------------------------------------------------------------
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---------------------------------------S----------------------------------------
----------------------S---------------------------------------------------------
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--S---S-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
----------------------------S-----------------------------------------------S---
---------------------S--------------------------------------------------------S-
--------------------------------------------------------------------------------
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-------------------------S-----------S------------------------------------------
---------------------------------------S----------------------------------------
----------S----------------------S----------------------------------------------
---------------S-----------S------S---------------------------S-----------------
---------------------------------------------------------------------S----------
--------------------------------SS
>forward_22
--TGAAAGCAAACCGAGCCTCA----------------------------------------------------------
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>reverse_1098
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---------------------------------------------------------TGCTGCTAGCCCACAAGATC---
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>forward_110
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----------AGACGCTCTTATCAGTCGGC--------------------------------------------------
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>reverse_1099
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----------------------------------------------------------GCTGCTAGCCCACAAGATCG--
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>forward_1098
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--------------------------------------CTGCCCCACATCGTCAAAGT----------------------
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>reverse_2789
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--------------------------------------------------------------------TGACGGCTTCTC
CATTGTCG------------------------------------------------------------------------
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----------------------------------
